GitHub - grinberglab/high-res-3D-tau: codes for projects using deep learning to segment tau and 3d reconstruction

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codes for projects using deep learning to segment tau and 3d reconstruction

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Name		Name	Last commit message	Last commit date
Latest commit History 179 Commits
Micro-Manager-2.0beta_scanner		Micro-Manager-2.0beta_scanner
PyRegistration		PyRegistration
TeraStitcher-portable-1.11.10-Linux		TeraStitcher-portable-1.11.10-Linux
__pycache__		__pycache__
convnet		convnet
convnet_python3		convnet_python3
dataset_creator		dataset_creator
hm_normalization		hm_normalization
matlab		matlab
misc		misc
mri		mri
pipeline		pipeline
registration		registration
results		results
scripts		scripts
tests		tests
util		util
vizualization_utils		vizualization_utils
wynton_image_files		wynton_image_files
ImageUtil.py		ImageUtil.py
ImageUtil.pyc		ImageUtil.pyc
TeraStitcher-portable-1.11.10-Linux.tar.gz		TeraStitcher-portable-1.11.10-Linux.tar.gz
TeraStitcher-portable-1.11.10-Linux_2.tar.gz		TeraStitcher-portable-1.11.10-Linux_2.tar.gz
apply_ants_tform.sh		apply_ants_tform.sh
convert.py		convert.py
create_3d_volume.py		create_3d_volume.py
create_heatmap2block.py		create_heatmap2block.py
create_histo_masks.py		create_histo_masks.py
create_terastitch_xml.py		create_terastitch_xml.py
focus_stack_preprocessing_multi_focus_layer.sh		focus_stack_preprocessing_multi_focus_layer.sh
focus_stack_utility_code		focus_stack_utility_code
imoverlay.py		imoverlay.py
imoverlay.pyc		imoverlay.pyc
mask_histo_images.py		mask_histo_images.py
rescale_images.py		rescale_images.py
run_ants.sh		run_ants.sh
run_ants_v2.sh		run_ants_v2.sh
run_apply_masks_create_nii.py		run_apply_masks_create_nii.py
run_export_heatmap_metadata.py		run_export_heatmap_metadata.py
run_focus_stack_multi_focus_layer.sh		run_focus_stack_multi_focus_layer.sh
run_seg_background.py		run_seg_background.py
run_seg_background_v2.py		run_seg_background_v2.py
run_tile_segmentation.py		run_tile_segmentation.py
seg_background.py		seg_background.py
seg_background.pyc		seg_background.pyc
slice2nii.py		slice2nii.py
slice2nii.pyc		slice2nii.pyc
slice2nii_withLoop.py		slice2nii_withLoop.py
stacking_for_nii.ipynb		stacking_for_nii.ipynb