From 6f389f13d210381f5458f39c16ccb54caa14729c Mon Sep 17 00:00:00 2001 From: Loyal Goff Date: Mon, 12 Nov 2018 23:58:27 -0500 Subject: [PATCH] Re-formatted fiverefs.md --- content/02.fiverefs.md | 29 ++++++++++++++++++++++++----- 1 file changed, 24 insertions(+), 5 deletions(-) diff --git a/content/02.fiverefs.md b/content/02.fiverefs.md index 81227ab..49f1928 100644 --- a/content/02.fiverefs.md +++ b/content/02.fiverefs.md @@ -1,7 +1,26 @@ ## Five Key References -* Hicks refs: [@doi:10.1093/biostatistics/kxx053] -* ProjectR & scCoGAPS: [@doi:10.1101/395004] -* Alevin: [@doi:10.1101/335000] -* Developing Mouse Retina: [@doi:10.1101/378950] -* tximeta [@doi:10.18129/B9.bioc.tximeta] +1. Stephanie C Hicks, F William Townes, Mingxiang Teng, Rafael A Irizarry +Missing data and technical variability in single-cell RNA-sequencing experiments +Biostatistics (2017-11-06) https://doi.org/gfb8g4 +DOI: 10.1093/biostatistics/kxx053 · PMID: 29121214 · PMCID: PMC6215955 + +2. Genevieve L Stein-O’Brien, Brian S. Clark, Thomas Sherman, Christina Zibetti, Qiwen Hu, Rachel Sealfon, Sheng Liu, Jiang Qian, Carlo Colantuoni, Seth Blackshaw, Loyal A. Goff, Elana J. Fertig +Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species. +Cold Spring Harbor Laboratory (2018-08-20) https://doi.org/gd2xpn +DOI: 10.1101/395004 + +3. Avi Srivastava, Laraib Malik, Tom Sean Smith, Ian Sudbery, Rob Patro +Alevin efficiently estimates accurate gene abundances from dscRNA-seq data +Cold Spring Harbor Laboratory (2018-06-01) https://doi.org/gffk42 +DOI: 10.1101/335000 + +4. Brian Clark, Genevieve Stein-O’Brien, Fion Shiau, Gabrielle Cannon, Emily Davis, Thomas Sherman, Fatemeh Rajaii, Rebecca James-Esposito, Richard Gronostajski, Elana J. Fertig, Loyal A. Goff, Seth Blackshaw +Comprehensive analysis of retinal development at single cell resolution identifies NFI factors as essential for mitotic exit and specification of late-born cells +Cold Spring Harbor Laboratory (2018-07-27) https://doi.org/gdwrzh +DOI: 10.1101/378950 + +5. Rob Patro & Michael Love +tximeta +Bioconductor (2018) https://doi.org/gfddxw +DOI: 10.18129/b9.bioc.tximeta