diff --git a/cmd/bio-bam-sort/cmd/main.go b/cmd/bio-bam-sort/cmd/main.go index 479dad7..6a71b2b 100644 --- a/cmd/bio-bam-sort/cmd/main.go +++ b/cmd/bio-bam-sort/cmd/main.go @@ -100,9 +100,9 @@ sorting and merging. The command reads a sequence of bam or sam records from input, sorts them, and produces file (note: this is NOT a BAM formatted file, - it is a shard file). If is '-', records are read from stdin. With - -sam flag, the records are assumed to be in SAM format. Else, it is assumed - to be in BAM format. + it is a shard file). If is '-', records are read from stdin. If + -sam=false, records are assumed to be in the BAM format. Else, records are + assumed to be in SAM format. 2. bio-bam-sort -bam