From b0c0da1556ffe208b91c5c95eaa545d072c145a3 Mon Sep 17 00:00:00 2001
From: David Stirling <dstirling@glencoesoftware.com>
Date: Thu, 17 Oct 2024 10:11:53 +0100
Subject: [PATCH 1/5] Try bioformats 7.3.1

---
 .github/workflows/maven.yml | 2 +-
 pom.xml                     | 4 ++--
 prokaryote/__init__.py      | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/maven.yml b/.github/workflows/maven.yml
index 10f4f06..b709a35 100644
--- a/.github/workflows/maven.yml
+++ b/.github/workflows/maven.yml
@@ -35,7 +35,7 @@ jobs:
       uses: actions/upload-artifact@v2.2.4
       with:
         # Artifact name
-        name: prokaryote-2.4.4.tar.gz
+        name: prokaryote-2.4.5.tar.gz
         path: dist/
     
     
diff --git a/pom.xml b/pom.xml
index 9525540..1856697 100644
--- a/pom.xml
+++ b/pom.xml
@@ -4,7 +4,7 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>org.cellprofiler</groupId>
     <artifactId>prokaryote</artifactId>
-    <version>2.4.4</version>
+    <version>2.4.5</version>
     <dependencies>
         <dependency>
             <groupId>org.apache.commons</groupId>
@@ -14,7 +14,7 @@
         <dependency>
             <groupId>ome</groupId>
             <artifactId>formats-gpl</artifactId>
-            <version>5.7.1</version>
+            <version>7.3.1</version>
             <exclusions>
                 <!-- Only has the side effect of rendering
                      loci.formats.gui.CacheComponent inoperable.
diff --git a/prokaryote/__init__.py b/prokaryote/__init__.py
index afe4dee..71c852b 100644
--- a/prokaryote/__init__.py
+++ b/prokaryote/__init__.py
@@ -1 +1 @@
-__version__ = "2.4.4"
+__version__ = "2.4.5"

From c5c85aeb0e0b0356ab6a81d912fd5cb8b0f5b440 Mon Sep 17 00:00:00 2001
From: Melissa Linkert <melissa@glencoesoftware.com>
Date: Fri, 18 Oct 2024 12:09:26 -0500
Subject: [PATCH 2/5] Minimal change to compile/test with Bio-Formats 7.3.1

---
 pom.xml | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/pom.xml b/pom.xml
index 1856697..b2eed2e 100644
--- a/pom.xml
+++ b/pom.xml
@@ -6,6 +6,12 @@
     <artifactId>prokaryote</artifactId>
     <version>2.4.5</version>
     <dependencies>
+        <dependency>
+          <groupId>org.scijava</groupId>
+          <artifactId>scijava-common</artifactId>
+          <version>2.56.0</version>
+        </dependency>
+
         <dependency>
             <groupId>org.apache.commons</groupId>
             <artifactId>commons-lang3</artifactId>
@@ -307,14 +313,6 @@
             <scope>test</scope>
         </dependency>
     </dependencies>
-    <parent>
-        <groupId>org.scijava</groupId>
-        <artifactId>pom-scijava</artifactId>
-        <version>10.4.1</version>
-    </parent>
-    <properties>
-        <bio-formats.version>5.7.1</bio-formats.version>
-    </properties>
     <build>
         <plugins>
         	<plugin>

From acd8078ef1e9b2b6260e84612e6bbd2cc5a43de3 Mon Sep 17 00:00:00 2001
From: Melissa Linkert <melissa@glencoesoftware.com>
Date: Fri, 18 Oct 2024 12:13:55 -0500
Subject: [PATCH 3/5] Update actions to v4

---
 .github/workflows/maven.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/maven.yml b/.github/workflows/maven.yml
index b709a35..279791c 100644
--- a/.github/workflows/maven.yml
+++ b/.github/workflows/maven.yml
@@ -15,13 +15,13 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v2
-    - uses: actions/setup-python@v2
+    - uses: actions/checkout@v4
+    - uses: actions/setup-python@v4
       with:
         architecture: x64
         python-version: 3.8
     - name: Setup Java JDK
-      uses: actions/setup-java@v2.1.0
+      uses: actions/setup-java@v4
       with:
         java-version: 8
         distribution: adopt
@@ -32,7 +32,7 @@ jobs:
     - name: Build Python package
       run: python setup.py sdist
     - name: Upload a Build Artifact
-      uses: actions/upload-artifact@v2.2.4
+      uses: actions/upload-artifact@v4
       with:
         # Artifact name
         name: prokaryote-2.4.5.tar.gz

From eb643d6ce299d1735f2f45d50da0897d9a19dee0 Mon Sep 17 00:00:00 2001
From: David Stirling <dstirling@glencoesoftware.com>
Date: Mon, 21 Oct 2024 14:04:54 +0100
Subject: [PATCH 4/5] Releaser

---
 .github/workflows/maven.yml | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/.github/workflows/maven.yml b/.github/workflows/maven.yml
index 279791c..16679b1 100644
--- a/.github/workflows/maven.yml
+++ b/.github/workflows/maven.yml
@@ -37,5 +37,11 @@ jobs:
         # Artifact name
         name: prokaryote-2.4.5.tar.gz
         path: dist/
+    - name: Release
+      uses: softprops/action-gh-release@v2
+      if: startsWith(github.ref, 'refs/tags/')
+      with:
+        files: dist/*tar.gz
+
     
     

From f7eec10f889f229171347233d6827e512f71fa37 Mon Sep 17 00:00:00 2001
From: David Stirling <dstirling@glencoesoftware.com>
Date: Mon, 21 Oct 2024 14:09:49 +0100
Subject: [PATCH 5/5] Respond to tags

---
 .github/workflows/maven.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/maven.yml b/.github/workflows/maven.yml
index 16679b1..28e6916 100644
--- a/.github/workflows/maven.yml
+++ b/.github/workflows/maven.yml
@@ -6,6 +6,8 @@ name: Java CI with Maven
 on:
   push:
     branches: [ master ]
+    tags:
+      - '*'
   pull_request:
     branches: [ master ]