README.rst

OMERO Reader

Pure Python implementation of python-bioformats reader API using OMERO.

Requirements

• OMERO.py 5.1.x, 5.2.x
• Python 2.6+

Development Installation

1. Clone the repository:

   [email protected]:glencoesoftware/omero-reader.git
   

2. Set up a virtualenv (http://www.pip-installer.org/) and activate it:

   curl -O -k https://raw.github.com/pypa/virtualenv/master/virtualenv.py
   python virtualenv.py omero-reader
   source omero-reader/bin/activate
   pip install -r requirements.txt
   pip install -r requirements-dev.txt
   

Running Tests

Using py.test to run the unit tests:

py.test tests/unit/

License

This project is licensed under the terms of the GNU General Public License (GPL) v2 or later.

Reference

• http://www.openmicroscopy.org/site/products/bio-formats
• https://github.com/CellProfiler/python-bioformats
• https://www.openmicroscopy.org/site/support/omero5.2/developers/Python.html