Dockerfile

# Development Dockerfile for bioformats2raw
# -----------------------------------------

# To install the built distribution into other runtimes
# pass a build argument, e.g.:
#
#   docker build --build-arg IMAGE=openjdk:9 ...
#

# Similarly, the BUILD_IMAGE argument can be overwritten
# but this is generally not needed.
ARG BUILD_IMAGE=gradle:6.9-jdk8

#
# Build phase: Use the gradle image for building.
#
FROM ${BUILD_IMAGE} as build
USER root
RUN apt-get update -qq && DEBIAN_FRONTEND=noninteractive apt-get install -y -qq libblosc1
RUN mkdir /bioformats2raw && chown 1000:1000 /bioformats2raw

# Build all
USER 1000

COPY --chown=1000:1000 . /bioformats2raw
WORKDIR /bioformats2raw
RUN gradle build
RUN cd build/distributions && rm bioformats2raw*tar && unzip bioformats2raw*zip && rm -rf bioformats2raw*zip


FROM openjdk:8 as final

RUN DEBIAN_FRONTEND=noninteractive \
    apt-get update -y -q \
 && apt-get install -y --no-install-recommends -q libblosc1 \
 && apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*


USER root
COPY --from=build /bioformats2raw/build/distributions/bioformats2raw* /opt/bioformats2raw
ENV PATH="/opt/bioformats2raw/bin:${PATH}"

USER 1000
WORKDIR /opt/bioformats2raw
ENTRYPOINT ["/opt/bioformats2raw/bin/bioformats2raw"]