release.yml

jobs:
  build:
    name: build
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ macos-latest, windows-2019 ]
        python-version: [ "3.8" ]
      fail-fast: false
    steps:
      - uses: actions/checkout@v2
        name: Checkout Repo
      - uses: actions/setup-python@v4
        name: Install Python
        with:
          architecture: x64
          python-version: ${{ matrix.python-version }}
          cache: pip
          cache-dependency-path: setup.py
      - uses: actions/setup-java@v3
        name: Install Java
        with:
          distribution: "temurin"
          java-version: "11" # The JDK version to make available on the path.
          java-package: jdk
          architecture: x64

      - name: Install build-time dependencies
        run: |
          pip install --upgrade wheel pip
          pip install setuptools==49
          pip install numpy==1.23.1
          pip install pyinstaller-hooks-contrib==2023.10
          pip install pyinstaller==4.10
          pip install imageio==2.34.0
          pip install cython
          pip install mysqlclient==2.0.3
      - env:
          LDFLAGS: -L/usr/local/opt/openssl/lib
          CERTIFICATE_OSX_APPLICATION: ${{ secrets.CERTIFICATE_OSX_APPLICATION }}
          CERTIFICATE_PASSWORD: ${{ secrets.CERTIFICATE_PASSWORD }}
        if: startsWith(matrix.os, 'macos')
        name: MacOS dependency install
        run: |
          brew install mysql
          brew install create-dmg
          pip install centrosome==1.2.2 --no-cache-dir --no-build-isolation
          git clone https://github.com/glencoesoftware/core.git
          cd core
          git checkout compat-4-2
          pip install --editable . --upgrade --no-use-pep517
          cd ..
          pip install --editable . --no-use-pep517
      - env:
          JDK_HOME: ${{ env.JAVA_HOME }}
        if: startsWith(matrix.os, 'windows')
        name: Windows dependency install
        run: |
          python -m pip install --upgrade pip setuptools wheel
          pip install centrosome==1.2.2 --no-cache-dir --no-build-isolation
          git clone https://github.com/glencoesoftware/core.git
          cd core
          git checkout compat-4-2
          pip install --editable . --upgrade --no-use-pep517
          cd ..
          pip install --editable . --no-use-pep517
      - name: Install plugins
        run: |
          pip install torch==2.2.1
          pip install cellpose==3.0.5
          pip install csbdeep==0.7.4
          pip install stardist==0.8.1
          pip install tensorflow==2.13.1
          pip install markupsafe==2.0.1
          pip install h5py==3.6.0
      - name: Display installed packages
        run: pip list
      - if: startsWith(matrix.os, 'windows')
        name: Windows pyinstaller build and package
        run: |
          pyinstaller distribution/windows/cellprofiler.spec
          iscc /dMyAppVersion="4.2.10006-ai" "distribution/windows/cellprofiler.iss"
      - if: startsWith(matrix.os, 'macos')
        name: MacOS pyinstaller build and package
        run: |
          pyinstaller -y ./distribution/macos/CellProfiler.spec
          create-dmg \
            --volname "CellProfiler" \
            --window-pos 200 120 \
            --window-size 800 529 \
            --icon-size 130 \
            --text-size 14 \
            --icon "CellProfiler+AI.app" 260 250 \
            --app-drop-link 540 250 \
            --hdiutil-quiet \
            "./dist/CellProfiler-macOS-4.2.10006-ai.dmg" \
            "./dist/CellProfiler+AI.app"
      - if: startsWith(matrix.os, 'macos')
        uses: actions/upload-artifact@v1
        name: MacOS artifact upload
        with:
          name: CellProfiler-macOS-4.2.10006-ai.dmg
          path: ./dist/CellProfiler-macOS-4.2.10006-ai.dmg
      - if: startsWith(matrix.os, 'windows')
        uses: actions/upload-artifact@v2
        name: Windows artifact upload
        with:
          name: CellProfiler-Windows-4.2.10006-ai.exe
          path: ./distribution/windows/Output/CellProfiler-Windows-4.2.10006-ai.exe
  upload:
    name: upload
    needs: build
    runs-on: ubuntu-latest
    if: startsWith(github.ref, 'refs/tags/')
    steps:
      - uses: actions/checkout@v2
      - env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        id: create_release
        uses: actions/create-release@v1
        with:
          draft: true
          prerelease: true
          release_name: ${{ github.ref }}
          tag_name: ${{ github.ref }}
      - uses: actions/download-artifact@v1
        with:
          name: CellProfiler-macOS-4.2.10006-ai.dmg
          path: ./
      - uses: actions/download-artifact@v1
        with:
          name: CellProfiler-Windows-4.2.10006-ai.exe
          path: ./
      - env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        uses: actions/upload-release-asset@v1
        with:
          asset_content_type: application/zip
          asset_name: CellProfiler-macOS-4.2.10006-ai.dmg
          asset_path: /home/runner/work/CellProfiler/CellProfiler/CellProfiler-macOS-4.2.10006-ai.dmg
          upload_url: ${{ steps.create_release.outputs.upload_url }}
      - env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        uses: actions/upload-release-asset@v1
        with:
          asset_content_type: application/exe
          asset_name: CellProfiler-Windows-4.2.10006-ai.exe
          asset_path: /home/runner/work/CellProfiler/CellProfiler/CellProfiler-Windows-4.2.10006-ai.exe
          upload_url: ${{ steps.create_release.outputs.upload_url }}
name: create-release
on:
  push:
    branches:
      - compat-4-2-ai
    tags:
      - "v*"
  pull_request:
    branches:
      - compat-4-2-ai