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womtools-validate.yml
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name: WOMtool Validation of WDL Script
on:
pull_request:
types: [opened, reopened, synchronize]
permissions:
contents: read
packages: write
jobs:
womtoolval:
runs-on: ubuntu-latest
steps:
-
name: Checkout
uses: actions/checkout@v4
-
name: Set Up Java
uses: actions/setup-java@v4
with:
distribution: 'temurin'
java-version: '21'
-
name: Pull WOMtool Jarfile
run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/womtool-86.jar
-
name: Validate WDL Scripts
run: |
java -jar womtool-86.jar validate helloHostname/helloHostname.wdl
java -jar womtool-86.jar validate helloDockerHostname/helloDockerHostname.wdl
java -jar womtool-86.jar validate gpuMatrixMult/gpuMatrixMult.wdl
java -jar womtool-86.jar validate parseBatchFile/parseBatchFile.wdl -i parseBatchFile/parseBatchFile-inputs.json
java -jar womtool-86.jar validate variantCalling/variantCalling.wdl -i variantCalling/variantCalling-inputs.json