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Test profiler ganon #22

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sofstam opened this issue Aug 8, 2023 · 0 comments
Open

Test profiler ganon #22

sofstam opened this issue Aug 8, 2023 · 0 comments
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@LilyAnderssonLee
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enhancement New feature or request

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sofstam commented Aug 8, 2023 •
edited by LilyAnderssonLee
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Ganon a k-mer-based read classification tool that uses Interleaved Bloom Filters in conjunction with a taxonomic clustering and a k-mer counting/filtering scheme.

Ganon’s strengths are an ultra-fast indexing method for large sets of reference sequences and also resources efficiency.

TO TEST:
1: Compare the Ganon classification results with those of the other two DNA-based classifiers, Kraken2 and Centrifuge.

2: Can we run Ganon for a very big BLAST nt database, considering Ganon's better ability to handle large databases and its memory efficiency?
@sofstam sofstam added the enhancement New feature or request label Aug 8, 2023
@LilyAnderssonLee LilyAnderssonLee changed the title Test ganon Test profiler ganon Aug 8, 2023
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@LilyAnderssonLee @sofstam