- Handled metaphlan profiles with unclassified taxa in the lineage (#61).
- Created command line options to expand the standard profile with name, rank, and/or lineage taxonomic information (#60).
- Made the Krakenuniq reader more accepting (#57).
- Documented which columns are used in final standardised output profiles.
- Documentation on where the taxpasta-supported Kaiju output comes from (i.e., kaiju2table rather than Kaiju itself) (#54).
- Corrected the assumption that the first two entries in a kraken2 profile are
always unclassified and root node percentage of abundances. This is not the
case for profiles where 100% of reads are assigned to taxa. Kraken2 profile
validation now looks for the
'U'and'R'taxonomy levels explicitly and checks their sum.
- First release