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Add Nanopore support #9

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talnor opened this issue May 9, 2022 · 0 comments
Open
10 tasks

Add Nanopore support #9

talnor opened this issue May 9, 2022 · 0 comments
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v2 Version 2

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@talnor
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talnor commented May 9, 2022 •
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Description

The current implementation is built to visualize illumina data. Many regions within GMS does however also sequence SARS-CoV-2 samples on Nanopore. We should therefore add support to visualize also nanopore data

This can be closed when

  • GMS-artic nanopore track produce all the input needed for sc2reporter
  • For extra nanopore specific metrics and data:
    • Decided upon metrics to display
  • GMS-artic nanopore output can be parsed and added to the database
  • Database
    • Add field for sequencing technology and any extra data types
  • Illumina vs Nanopore data
    • Discussed and decided on how to compare data from different sequence technologies
    • Add option to filter displayed results based on sequencing technology
    • Sample comparisons can be performed between between any type of sample, or samples of a specific sequencing technology

Driver

Stockholm region
@talnor talnor added the v2 Version 2 label May 9, 2022
@talnor talnor mentioned this issue May 18, 2022
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@talnor