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PacBio data download failed #20

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crazysummerW opened this issue Apr 11, 2023 · 1 comment
Open

PacBio data download failed #20

crazysummerW opened this issue Apr 11, 2023 · 1 comment

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@crazysummerW
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crazysummerW commented Apr 11, 2023 •
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Hello,
I want to download the PacBio bam.
for example:
wget ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/AshkenazimTrio/HG002_NA24385_son/PacBio_MtSinai_NIST/CSHL_bwamem_bam_GRCh37/BWA-MEM_Chr10_HG002_merged_11_12.sort.bam
but I failed.
image
Could you tell me the correct download link?
@chunlinxiao
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the PacBio bwamem and blasr bams have been removed a while age, and replaced with NGLMR and minimap2. Please follow the links from the index table, eg.

https://ftp.ncbi.nlm.nih.gov/ReferenceSamples/giab/data_indexes/AshkenazimTrio/alignment.index.AJtrio_PacBio_Baylor_NGMLR_bam_GRCh37_07092018.HG002

Thanks

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@chunlinxiao @crazysummerW