Create new export for GO-CAMs

[pgaudet]

Project link

https://github.com/orgs/geneontology/projects/TBD

Project description

• Spin off of https://docs.google.com/document/d/11lto5g72kHnJynRIQ81h-Oc3EjlOceTJo924kRF1O1U/edit#

For the causally connected pathways, enable these to be downloaded in one large SIF-formatted file (per organism) for analysis in CytoScape. These need only to contain the gene products as nodes, and causal links between those gp nodes (e.g. gpA <-enabled-by- MF1 -causally-upstream-of-> MF2 -enabled-by->gpB is represented as gpA -> gpB, where -> is some generic causally upstream of relation). For activities that are connected via an intervening “activity regulating process” (e.g. transcription), ignore the process and link successive gene product activities. Paul and Chris will test in Cytoscape to make sure it works with the cytoscape tools.

• Add to pipeline

PI

TBD

Product owner (PO)

TBD

Technical lead (TL)

TBD

Other personnel (OP)

TBD

Technical specs

TBD (template: https://docs.google.com/document/d/111UqtS3G0aJZpAijZYI3Da0t94OQpGePlPJsqZE4Tio/edit)

Other comments

N/A

[balhoff]

I have a preliminary version of this export. Need to work with @kltm on how to integrate into a pipeline.