Discuss and create roadmap for integrating remaining resource upstream files

[kltm]

Project link

https://github.com/orgs/geneontology/projects/109

Project description

Start creating a roadmap and timeline for pulling remaining upstream files to me processed directly into the GO Central pipeline.

This is to be coordinated at some extent with the Alliance.

Deliverables should be:

• An understanding of what files remain in upstream resources
• An understanding of the kinds of software being used at the MODs for the processing of these files
• A feel for how well this software generalizes across upstream resources
• An agreement that if we could do this processing, resources could go "all-in" with Noctua and GO Central as the source for all functional annotation; i.e. GO would have no upstream pickups from participating resources.
• An outline of a timeline to complete the transition to GO being able to fully absorb a resource (bring in or create software, add to pipeline, integrate into data products)

Performing these tasks is not a deliverable.

PI

@cmungall

Project owner (PO)

@ukemi

Technical lead (TL)

@kltm

Other personnel (OP)

TBD

Technical specs

No technical specs needed as the only product is discussion and the creation of requirements. That said, we are indeed planning this out, so we decided a non-active tech doc would be useful:
https://docs.google.com/document/d/10m5ZQ6ffugaUb2L85TtBB94-5G12GwVH9b8JjO_4Y6Y/edit
This may eventually evolve into the final tech doc.

Other comments

N/A

[kltm]

@pgaudet Not sure if this is "Hopper" or "Priority"...

[pgaudet]

• PI call 2022-12-13 Proposal: take data GOA + data from MOD and compile this data as a curated annotated file

[pgaudet]

Next goal: concrete proposal for the GOC meeting

[pgaudet]

Next step: David, Seth, Chris to meet to make a concrete plan as to how to move forward

[kltm]

Planned for April 7th.

[pgaudet]

Putting back into Resourcing until we have someone to go this.

@ukemi Please comment if this not reflecting what is happening.