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GPAD export erroneous line for molecular_event as subject #286

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dustine32 opened this issue Oct 2, 2023 · 1 comment
Open

GPAD export erroneous line for molecular_event as subject #286

dustine32 opened this issue Oct 2, 2023 · 1 comment

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@dustine32
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In pathway R-HSA-983189 (Kinesins - imported from: Reactome), the GPAD export produces only one annotation line and it's kind of weird:

!gpa-version: 1.1
obo	go/extensions/reacto.owl#molecular_event	part_of	GO:0007018	Reactome:R-HSA-983189	ECO:0000313			20230905	Reactome		contributor=GOC:reactome_curators|noctua-model-id=gomodel:R-HSA-983189|model-state=development

There are no annotatable entities (e.g. controllers) in this model. All activities are molecular_event. I think this GPAD export should just return blank/no annotations. Not sure if this behavior is being triggered by bad model data or the GPAD export function in minerva.

Tagging @balhoff

@balhoff
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balhoff commented Oct 5, 2023

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