We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Hi, I've installed DiffDock using the following: git clone https://github.com/gcorso/DiffDock.git conda env create --file environment.yml conda activate diffdock
When I run python inference.py to get the command usage I receive the following: (diffdock) xxxx@xxxx-Predator-PHN16-71:~/sources/DiffDock$ python inference.py Traceback (most recent call last): File "/home/xxxx/sources/DiffDock/inference.py", line 20, in import torch ModuleNotFoundError: No module named 'torch' (diffdock) xxxx@xxxx-Predator-PHN16-71:~/sources/DiffDock$ conda list # packages in environment at /home/xxxx/anaconda3/envs/diffdock: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge aiofiles 23.2.1 pypi_0 pypi altair 5.4.1 pypi_0 pypi annotated-types 0.7.0 pypi_0 pypi anyio 4.6.2.post1 pypi_0 pypi asttokens 2.4.1 pyhd8ed1ab_0 conda-forge attrs 24.2.0 pypi_0 pypi biopython 1.84 py39hd3abc70_0 conda-forge brotli 1.1.0 hb9d3cd8_2 conda-forge brotli-bin 1.1.0 hb9d3cd8_2 conda-forge brotli-python 1.1.0 py39hf88036b_2 conda-forge bzip2 1.0.8 h4bc722e_7 conda-forge ca-certificates 2024.8.30 hbcca054_0 conda-forge certifi 2024.8.30 pyhd8ed1ab_0 conda-forge cffi 1.17.1 py39h15c3d72_0 conda-forge charset-normalizer 3.4.0 pyhd8ed1ab_0 conda-forge click 8.1.7 pypi_0 pypi contourpy 1.3.0 py39h74842e3_2 conda-forge cycler 0.12.1 pyhd8ed1ab_0 conda-forge exceptiongroup 1.2.2 pypi_0 pypi executing 2.1.0 pyhd8ed1ab_0 conda-forge fastapi 0.115.5 pypi_0 pypi ffmpy 0.4.0 pypi_0 pypi filelock 3.16.1 pypi_0 pypi fonttools 4.54.1 py39h9399b63_1 conda-forge freetype 2.12.1 h267a509_2 conda-forge fsspec 2024.10.0 pypi_0 pypi gradio 3.50.2 pypi_0 pypi gradio-client 0.6.1 pypi_0 pypi h11 0.14.0 pypi_0 pypi h2 4.1.0 pyhd8ed1ab_0 conda-forge hpack 4.0.0 pyh9f0ad1d_0 conda-forge httpcore 1.0.6 pypi_0 pypi httpx 0.27.2 pypi_0 pypi huggingface-hub 0.26.2 pypi_0 pypi hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge idna 3.10 pyhd8ed1ab_0 conda-forge importlib-resources 6.4.5 pyhd8ed1ab_0 conda-forge importlib_resources 6.4.5 pyhd8ed1ab_0 conda-forge jinja2 3.1.4 pypi_0 pypi jsonschema 4.23.0 pypi_0 pypi jsonschema-specifications 2024.10.1 pypi_0 pypi kiwisolver 1.4.7 py39h74842e3_0 conda-forge lcms2 2.16 hb7c19ff_0 conda-forge ld_impl_linux-64 2.43 h712a8e2_2 conda-forge lerc 4.0.0 h27087fc_0 conda-forge libblas 3.9.0 25_linux64_openblas conda-forge libbrotlicommon 1.1.0 hb9d3cd8_2 conda-forge libbrotlidec 1.1.0 hb9d3cd8_2 conda-forge libbrotlienc 1.1.0 hb9d3cd8_2 conda-forge libcblas 3.9.0 25_linux64_openblas conda-forge libdeflate 1.22 hb9d3cd8_0 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc 14.2.0 h77fa898_1 conda-forge libgcc-ng 14.2.0 h69a702a_1 conda-forge libgfortran 14.2.0 h69a702a_1 conda-forge libgfortran-ng 14.2.0 h69a702a_1 conda-forge libgfortran5 14.2.0 hd5240d6_1 conda-forge libgomp 14.2.0 h77fa898_1 conda-forge libjpeg-turbo 3.0.0 hd590300_1 conda-forge liblapack 3.9.0 25_linux64_openblas conda-forge libnsl 2.0.1 hd590300_0 conda-forge libopenblas 0.3.28 pthreads_h94d23a6_1 conda-forge libpng 1.6.44 hadc24fc_0 conda-forge libsqlite 3.47.0 hadc24fc_1 conda-forge libstdcxx 14.2.0 hc0a3c3a_1 conda-forge libstdcxx-ng 14.2.0 h4852527_1 conda-forge libtiff 4.7.0 he137b08_1 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libwebp-base 1.4.0 hd590300_0 conda-forge libxcb 1.17.0 h8a09558_0 conda-forge libxcrypt 4.4.36 hd590300_1 conda-forge libzlib 1.3.1 hb9d3cd8_2 conda-forge markupsafe 2.1.5 pypi_0 pypi matplotlib-base 3.9.2 py39h16632d1_2 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge narwhals 1.13.5 pypi_0 pypi ncurses 6.5 he02047a_1 conda-forge numpy 1.26.4 py39h474f0d3_0 conda-forge openjpeg 2.5.2 h488ebb8_0 conda-forge openssl 3.4.0 hb9d3cd8_0 conda-forge orjson 3.10.11 pypi_0 pypi packaging 24.2 pyhd8ed1ab_0 conda-forge pandas 2.2.3 pypi_0 pypi pillow 10.4.0 pypi_0 pypi pip 24.3.1 pyh8b19718_0 conda-forge prody 2.2.0 py39h5a03fae_1 conda-forge pthread-stubs 0.4 hb9d3cd8_1002 conda-forge pycparser 2.22 pyhd8ed1ab_0 conda-forge pydantic 2.9.2 pypi_0 pypi pydantic-core 2.23.4 pypi_0 pypi pydub 0.25.1 pypi_0 pypi pygments 2.18.0 pyhd8ed1ab_0 conda-forge pyparsing 3.2.0 pyhd8ed1ab_1 conda-forge pysocks 1.7.1 pyha2e5f31_6 conda-forge python 3.9.18 h0755675_1_cpython conda-forge python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge python-devtools 0.12.2 pyhd8ed1ab_0 conda-forge python-multipart 0.0.17 pypi_0 pypi python_abi 3.9 5_cp39 conda-forge pytz 2024.2 pypi_0 pypi pyyaml 6.0.2 pypi_0 pypi qhull 2020.2 h434a139_5 conda-forge readline 8.2 h8228510_1 conda-forge referencing 0.35.1 pypi_0 pypi requests 2.32.3 pyhd8ed1ab_0 conda-forge rpds-py 0.21.0 pypi_0 pypi scipy 1.12.0 py39h474f0d3_2 conda-forge semantic-version 2.10.0 pypi_0 pypi setuptools 69.5.1 pyhd8ed1ab_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge sniffio 1.3.1 pypi_0 pypi starlette 0.41.2 pypi_0 pypi tk 8.6.13 noxft_h4845f30_101 conda-forge tqdm 4.67.0 pypi_0 pypi typing-extensions 4.12.2 pypi_0 pypi tzdata 2024.2 pypi_0 pypi unicodedata2 15.1.0 py39h8cd3c5a_1 conda-forge urllib3 2.2.3 pyhd8ed1ab_0 conda-forge uvicorn 0.32.0 pypi_0 pypi websockets 11.0.3 pypi_0 pypi wheel 0.45.0 pyhd8ed1ab_0 conda-forge xorg-libxau 1.0.11 hb9d3cd8_1 conda-forge xorg-libxdmcp 1.1.5 hb9d3cd8_0 conda-forge xz 5.2.6 h166bdaf_0 conda-forge zipp 3.21.0 pyhd8ed1ab_0 conda-forge zstandard 0.23.0 py39h08a7858_1 conda-forge zstd 1.5.6 ha6fb4c9_0 conda-forge
(diffdock) xxxx@xxxx-Predator-PHN16-71:~/sources/DiffDock$ conda list | grep torch
It seems that pytorch has not been installed. Any suggestions?
Thanks.
Saverio
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Hi,
I've installed DiffDock using the following:
git clone https://github.com/gcorso/DiffDock.git
conda env create --file environment.yml
conda activate diffdock
When I run python inference.py to get the command usage I receive the following:
(diffdock) xxxx@xxxx-Predator-PHN16-71:~/sources/DiffDock$ python inference.py
Traceback (most recent call last):
File "/home/xxxx/sources/DiffDock/inference.py", line 20, in
import torch
ModuleNotFoundError: No module named 'torch'
(diffdock) xxxx@xxxx-Predator-PHN16-71:~/sources/DiffDock$ conda list
# packages in environment at /home/xxxx/anaconda3/envs/diffdock:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
aiofiles 23.2.1 pypi_0 pypi
altair 5.4.1 pypi_0 pypi
annotated-types 0.7.0 pypi_0 pypi
anyio 4.6.2.post1 pypi_0 pypi
asttokens 2.4.1 pyhd8ed1ab_0 conda-forge
attrs 24.2.0 pypi_0 pypi
biopython 1.84 py39hd3abc70_0 conda-forge
brotli 1.1.0 hb9d3cd8_2 conda-forge
brotli-bin 1.1.0 hb9d3cd8_2 conda-forge
brotli-python 1.1.0 py39hf88036b_2 conda-forge
bzip2 1.0.8 h4bc722e_7 conda-forge
ca-certificates 2024.8.30 hbcca054_0 conda-forge
certifi 2024.8.30 pyhd8ed1ab_0 conda-forge
cffi 1.17.1 py39h15c3d72_0 conda-forge
charset-normalizer 3.4.0 pyhd8ed1ab_0 conda-forge
click 8.1.7 pypi_0 pypi
contourpy 1.3.0 py39h74842e3_2 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.2.2 pypi_0 pypi
executing 2.1.0 pyhd8ed1ab_0 conda-forge
fastapi 0.115.5 pypi_0 pypi
ffmpy 0.4.0 pypi_0 pypi
filelock 3.16.1 pypi_0 pypi
fonttools 4.54.1 py39h9399b63_1 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
fsspec 2024.10.0 pypi_0 pypi
gradio 3.50.2 pypi_0 pypi
gradio-client 0.6.1 pypi_0 pypi
h11 0.14.0 pypi_0 pypi
h2 4.1.0 pyhd8ed1ab_0 conda-forge
hpack 4.0.0 pyh9f0ad1d_0 conda-forge
httpcore 1.0.6 pypi_0 pypi
httpx 0.27.2 pypi_0 pypi
huggingface-hub 0.26.2 pypi_0 pypi
hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge
idna 3.10 pyhd8ed1ab_0 conda-forge
importlib-resources 6.4.5 pyhd8ed1ab_0 conda-forge
importlib_resources 6.4.5 pyhd8ed1ab_0 conda-forge
jinja2 3.1.4 pypi_0 pypi
jsonschema 4.23.0 pypi_0 pypi
jsonschema-specifications 2024.10.1 pypi_0 pypi
kiwisolver 1.4.7 py39h74842e3_0 conda-forge
lcms2 2.16 hb7c19ff_0 conda-forge
ld_impl_linux-64 2.43 h712a8e2_2 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 25_linux64_openblas conda-forge
libbrotlicommon 1.1.0 hb9d3cd8_2 conda-forge
libbrotlidec 1.1.0 hb9d3cd8_2 conda-forge
libbrotlienc 1.1.0 hb9d3cd8_2 conda-forge
libcblas 3.9.0 25_linux64_openblas conda-forge
libdeflate 1.22 hb9d3cd8_0 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc 14.2.0 h77fa898_1 conda-forge
libgcc-ng 14.2.0 h69a702a_1 conda-forge
libgfortran 14.2.0 h69a702a_1 conda-forge
libgfortran-ng 14.2.0 h69a702a_1 conda-forge
libgfortran5 14.2.0 hd5240d6_1 conda-forge
libgomp 14.2.0 h77fa898_1 conda-forge
libjpeg-turbo 3.0.0 hd590300_1 conda-forge
liblapack 3.9.0 25_linux64_openblas conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libopenblas 0.3.28 pthreads_h94d23a6_1 conda-forge
libpng 1.6.44 hadc24fc_0 conda-forge
libsqlite 3.47.0 hadc24fc_1 conda-forge
libstdcxx 14.2.0 hc0a3c3a_1 conda-forge
libstdcxx-ng 14.2.0 h4852527_1 conda-forge
libtiff 4.7.0 he137b08_1 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libwebp-base 1.4.0 hd590300_0 conda-forge
libxcb 1.17.0 h8a09558_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libzlib 1.3.1 hb9d3cd8_2 conda-forge
markupsafe 2.1.5 pypi_0 pypi
matplotlib-base 3.9.2 py39h16632d1_2 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
narwhals 1.13.5 pypi_0 pypi
ncurses 6.5 he02047a_1 conda-forge
numpy 1.26.4 py39h474f0d3_0 conda-forge
openjpeg 2.5.2 h488ebb8_0 conda-forge
openssl 3.4.0 hb9d3cd8_0 conda-forge
orjson 3.10.11 pypi_0 pypi
packaging 24.2 pyhd8ed1ab_0 conda-forge
pandas 2.2.3 pypi_0 pypi
pillow 10.4.0 pypi_0 pypi
pip 24.3.1 pyh8b19718_0 conda-forge
prody 2.2.0 py39h5a03fae_1 conda-forge
pthread-stubs 0.4 hb9d3cd8_1002 conda-forge
pycparser 2.22 pyhd8ed1ab_0 conda-forge
pydantic 2.9.2 pypi_0 pypi
pydantic-core 2.23.4 pypi_0 pypi
pydub 0.25.1 pypi_0 pypi
pygments 2.18.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.2.0 pyhd8ed1ab_1 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
python 3.9.18 h0755675_1_cpython conda-forge
python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge
python-devtools 0.12.2 pyhd8ed1ab_0 conda-forge
python-multipart 0.0.17 pypi_0 pypi
python_abi 3.9 5_cp39 conda-forge
pytz 2024.2 pypi_0 pypi
pyyaml 6.0.2 pypi_0 pypi
qhull 2020.2 h434a139_5 conda-forge
readline 8.2 h8228510_1 conda-forge
referencing 0.35.1 pypi_0 pypi
requests 2.32.3 pyhd8ed1ab_0 conda-forge
rpds-py 0.21.0 pypi_0 pypi
scipy 1.12.0 py39h474f0d3_2 conda-forge
semantic-version 2.10.0 pypi_0 pypi
setuptools 69.5.1 pyhd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.3.1 pypi_0 pypi
starlette 0.41.2 pypi_0 pypi
tk 8.6.13 noxft_h4845f30_101 conda-forge
tqdm 4.67.0 pypi_0 pypi
typing-extensions 4.12.2 pypi_0 pypi
tzdata 2024.2 pypi_0 pypi
unicodedata2 15.1.0 py39h8cd3c5a_1 conda-forge
urllib3 2.2.3 pyhd8ed1ab_0 conda-forge
uvicorn 0.32.0 pypi_0 pypi
websockets 11.0.3 pypi_0 pypi
wheel 0.45.0 pyhd8ed1ab_0 conda-forge
xorg-libxau 1.0.11 hb9d3cd8_1 conda-forge
xorg-libxdmcp 1.1.5 hb9d3cd8_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zipp 3.21.0 pyhd8ed1ab_0 conda-forge
zstandard 0.23.0 py39h08a7858_1 conda-forge
zstd 1.5.6 ha6fb4c9_0 conda-forge
(diffdock) xxxx@xxxx-Predator-PHN16-71:~/sources/DiffDock$ conda list | grep torch
It seems that pytorch has not been installed.
Any suggestions?
Thanks.
Saverio
The text was updated successfully, but these errors were encountered: