-
-

Python GBIF Client

+
+

pygbif

pypi docs travis coverage

Python client for the GBIF API.

Source on GitHub at sckott/pygbif

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pygbif is split up into modules for each of the major groups of API methods.

- -

Note that GBIF maps API is not included in pygbif.

Other GBIF clients:

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-

Installation

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pip install pygbif
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Installation

+
Stable from pypi

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pip install pygbif
 

 

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Development version

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[sudo] pip install git+git://github.com/sckott/pygbif.git#egg=pygbif
+

 

+
pygbif is split up into modules for each of the major groups of API methods.

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  • Registry - Datasets, Nodes, Installations, Networks, Organizations
    • 
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  • Species - Taxonomic names
    • 
+
  • Occurrences - Occurrence data, including the download API
    • 
+

+
You can import the entire library, or each module individually as needed.

+
Note that GBIF maps API is not included in pygbif.

Registry module

+

registry module API:

+
    +
  • organizations
    • +
  • nodes
    • +
  • networks
    • +
  • installations
    • +
  • datasets
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  • dataset_metrics
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  • dataset_suggest
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  • dataset_search
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+

Example usage:

from pygbif import registry
 registry.dataset_metrics(uuid='3f8a1297-3259-4700-91fc-acc4170b27ce')
@@ -164,6 +182,15 @@

Registry module

Species module

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species module API:

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    +
  • name_backbone
    • +
  • name_suggest
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  • name_usage
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  • name_lookup
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  • name_parser
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+

Example usage:

from pygbif import species
 species.name_suggest(q='Puma concolor')
@@ -171,10 +198,32 @@

Species module

Occurrences module

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registry module API:

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    +
  • search
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  • get
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  • get_verbatim
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  • get_fragment
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  • count
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  • count_basisofrecord
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  • count_year
    • +
  • count_datasets
    • +
  • count_countries
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  • count_schema
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  • count_publishingcountries
    • +
  • download
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  • download_meta
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  • download_list
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  • download_get
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+

Example usage:

from pygbif import occurrences as occ
 occ.search(taxonKey = 3329049)
 occ.get(key = 252408386)
 occ.count(isGeoreferenced = True)
+occ.download('basisOfRecord = LITERATURE')
+occ.download('taxonKey = 3119195')
+occ.download('decimalLatitude > 50')
 occ.download_list(user = "sckott", limit = 5)
 occ.download_meta(key = "0000099-140929101555934")
 occ.download_get("0000066-140928181241064")
diff --git a/docs/_build/html/objects.inv b/docs/_build/html/objects.inv
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diff --git a/docs/_build/html/searchindex.js b/docs/_build/html/searchindex.js
index 815b9ed..947ec73 100644
--- a/docs/_build/html/searchindex.js
+++ b/docs/_build/html/searchindex.js
@@ -1 +1 @@
-Search.setIndex({envversion:49,filenames:["changelog_link","index","occurrences","registry","species"],objects:{"":{pygbif:[4,0,0,"-"]},"pygbif.occurrences":{count:[2,1,1,""],count_basisofrecord:[2,1,1,""],count_countries:[2,1,1,""],count_datasets:[2,1,1,""],count_publishingcountries:[2,1,1,""],count_schema:[2,1,1,""],count_year:[2,1,1,""],download:[2,1,1,""],download_get:[2,1,1,""],download_list:[2,1,1,""],download_meta:[2,1,1,""],get:[2,1,1,""],get_fragment:[2,1,1,""],get_verbatim:[2,1,1,""],search:[2,1,1,""]},"pygbif.registry":{dataset_metrics:[3,1,1,""],dataset_search:[3,1,1,""],dataset_suggest:[3,1,1,""],datasets:[3,1,1,""],installations:[3,1,1,""],networks:[3,1,1,""],nodes:[3,1,1,""],organizations:[3,1,1,""]},"pygbif.species":{name_backbone:[4,1,1,""],name_lookup:[4,1,1,""],name_parser:[4,1,1,""],name_suggest:[4,1,1,""],name_usage:[4,1,1,""]}},objnames:{"0":["py","module","Python module"],"1":["py","method","Python 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\ No newline at end of file
diff --git a/docs/index.rst b/docs/index.rst
index 20a9160..7315886 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -1,5 +1,5 @@
-Python GBIF Client
-===========================
+pygbif
+=======
 
 |pypi| |docs| |travis| |coverage|
 
@@ -8,36 +8,51 @@ Python client for the `GBIF API
 
 `Source on GitHub at sckott/pygbif `__
 
-`pygbif` is split up into modules for each of the major groups of API methods.
+Other GBIF clients:
 
-* Registry - Datasets, Nodes, Installations, Networks, Organizations - `Registry API Docs`_
-* Species - Taxonomic names - `Species API Docs`_
-* Occurrences - Occurrence data, including the download API - `Occurrences API Docs`_
+* R: `rgbif`, `ropensci/rgbif `__
 
-Note that GBIF maps API_ is not included in `pygbif`.
+Installation
+============
 
-.. _API: http://www.gbif.org/developer/maps
+Stable from pypi
 
-Other GBIF clients:
+.. code-block:: console
 
-* R: rgbif_
+    pip install pygbif
 
-.. _rgbif: https://github.com/ropensci/rgbif
-.. _Registry API Docs: http://www.gbif.org/developer/registry
-.. _Species API Docs: http://www.gbif.org/developer/species
-.. _Occurrences API Docs: http://www.gbif.org/developer/occurrences
+Development version
 
-Installation
--------------
+.. code-block:: console
 
-::
+    [sudo] pip install git+git://github.com/sckott/pygbif.git#egg=pygbif
 
-    pip install pygbif
+`pygbif` is split up into modules for each of the major groups of API methods.
+
+* Registry - Datasets, Nodes, Installations, Networks, Organizations
+* Species - Taxonomic names
+* Occurrences - Occurrence data, including the download API
 
+You can import the entire library, or each module individually as needed.
+
+Note that `GBIF maps API `__ is not included in `pygbif`.
 
 Registry module
 ===============
 
+registry module API:
+
+* `organizations`
+* `nodes`
+* `networks`
+* `installations`
+* `datasets`
+* `dataset_metrics`
+* `dataset_suggest`
+* `dataset_search`
+
+Example usage:
+
 .. code-block:: python
 
     from pygbif import registry
@@ -46,6 +61,16 @@ Registry module
 Species module
 ===============
 
+species module API:
+
+* `name_backbone`
+* `name_suggest`
+* `name_usage`
+* `name_lookup`
+* `name_parser`
+
+Example usage:
+
 .. code-block:: python
 
     from pygbif import species
@@ -54,12 +79,35 @@ Species module
 Occurrences module
 ==================
 
+registry module API:
+
+* `search`
+* `get`
+* `get_verbatim`
+* `get_fragment`
+* `count`
+* `count_basisofrecord`
+* `count_year`
+* `count_datasets`
+* `count_countries`
+* `count_schema`
+* `count_publishingcountries`
+* `download`
+* `download_meta`
+* `download_list`
+* `download_get`
+
+Example usage:
+
 .. code-block:: python
 
     from pygbif import occurrences as occ
     occ.search(taxonKey = 3329049)
     occ.get(key = 252408386)
     occ.count(isGeoreferenced = True)
+    occ.download('basisOfRecord = LITERATURE')
+    occ.download('taxonKey = 3119195')
+    occ.download('decimalLatitude > 50')
     occ.download_list(user = "sckott", limit = 5)
     occ.download_meta(key = "0000099-140929101555934")
     occ.download_get("0000066-140928181241064")
@@ -74,7 +122,6 @@ Contributors
 * `Stijn Van Hoey `__
 * `Peter Desmet `__
 
-
 Meta
 ====