diff --git a/.buildinfo b/.buildinfo
index dfc8a79db..888e5c3fa 100644
--- a/.buildinfo
+++ b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 13b17c5c373045c1725623acad9b96b1
+config: 0e5232a893a37e47ccfdc6e2362e71ce
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_downloads/0171ca85d45eca4cef1870c2e499de10/plot_make_gif.ipynb b/_downloads/0171ca85d45eca4cef1870c2e499de10/plot_make_gif.ipynb
index 99d239e2e..dffa0d196 100644
--- a/_downloads/0171ca85d45eca4cef1870c2e499de10/plot_make_gif.ipynb
+++ b/_downloads/0171ca85d45eca4cef1870c2e499de10/plot_make_gif.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -125,7 +114,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/03727e1a4b42addea2598e45140498aa/static_with_custom_template.ipynb b/_downloads/03727e1a4b42addea2598e45140498aa/static_with_custom_template.ipynb
index 88cc5ca81..280219022 100644
--- a/_downloads/03727e1a4b42addea2598e45140498aa/static_with_custom_template.ipynb
+++ b/_downloads/03727e1a4b42addea2598e45140498aa/static_with_custom_template.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
index 4a86a80ba..0c756d864 100644
Binary files a/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ
diff --git a/_downloads/09288dd002fd14fba94fc085d758d914/plot_roi_voxel_index_volume.ipynb b/_downloads/09288dd002fd14fba94fc085d758d914/plot_roi_voxel_index_volume.ipynb
index 02d74e73f..091daf5b5 100644
--- a/_downloads/09288dd002fd14fba94fc085d758d914/plot_roi_voxel_index_volume.ipynb
+++ b/_downloads/09288dd002fd14fba94fc085d758d914/plot_roi_voxel_index_volume.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/0f8be1e4c7dbdc2b5c70b92872c6b4bf/multiple_datasets.ipynb b/_downloads/0f8be1e4c7dbdc2b5c70b92872c6b4bf/multiple_datasets.ipynb
index 7bd3b0136..dc5ce6dc0 100644
--- a/_downloads/0f8be1e4c7dbdc2b5c70b92872c6b4bf/multiple_datasets.ipynb
+++ b/_downloads/0f8be1e4c7dbdc2b5c70b92872c6b4bf/multiple_datasets.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/123c014fb1951d73e7b1f19570a43c66/plot_get_roi_vertices.ipynb b/_downloads/123c014fb1951d73e7b1f19570a43c66/plot_get_roi_vertices.ipynb
index 7ceab5003..c5635fb44 100644
--- a/_downloads/123c014fb1951d73e7b1f19570a43c66/plot_get_roi_vertices.ipynb
+++ b/_downloads/123c014fb1951d73e7b1f19570a43c66/plot_get_roi_vertices.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/1bc319bfa2fe17d7880c31c36c39b670/plot_thickness_nanmean.ipynb b/_downloads/1bc319bfa2fe17d7880c31c36c39b670/plot_thickness_nanmean.ipynb
index e2f0f021a..53082745f 100644
--- a/_downloads/1bc319bfa2fe17d7880c31c36c39b670/plot_thickness_nanmean.ipynb
+++ b/_downloads/1bc319bfa2fe17d7880c31c36c39b670/plot_thickness_nanmean.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/2adc80653ddc362ff5e8f800f300132f/subject_to_mni.py b/_downloads/2adc80653ddc362ff5e8f800f300132f/subject_to_mni.py
index c35f02a7a..73c93b735 100644
--- a/_downloads/2adc80653ddc362ff5e8f800f300132f/subject_to_mni.py
+++ b/_downloads/2adc80653ddc362ff5e8f800f300132f/subject_to_mni.py
@@ -32,7 +32,7 @@
 mni_data = mni.transform_to_mni(data, s1_to_mni)
 # mni_data is a nibabel Nifti1Image
 
-mni_data_vol = mni_data.get_data() # the actual array, shape=(182,218,182)
+mni_data_vol = mni_data.get_fdata() # the actual array, shape=(182,218,182)
 
 # That was the manual method. pycortex can also cache these transforms for you
 # if you get them using the pycortex database
diff --git a/_downloads/2b386e6cf21fd3a3a1c01882f5073cd7/mni_to_subject.py b/_downloads/2b386e6cf21fd3a3a1c01882f5073cd7/mni_to_subject.py
index 10fd20133..1650920ba 100644
--- a/_downloads/2b386e6cf21fd3a3a1c01882f5073cd7/mni_to_subject.py
+++ b/_downloads/2b386e6cf21fd3a3a1c01882f5073cd7/mni_to_subject.py
@@ -37,7 +37,7 @@
                                             data.data, s1_to_mni)
 # subject_data is a nibabel Nifti1Image
 
-subject_data_vol = mni_data.get_data() # the actual array, shape=(100,100,31)
+subject_data_vol = mni_data.get_fdata() # the actual array, shape=(100,100,31)
 
 # That was the manual method. pycortex can also cache these transforms for you
 # if you get them using the pycortex database
diff --git a/_downloads/2c1d4ccc800c14e88c119609426fa416/plot_geodesic_path.py b/_downloads/2c1d4ccc800c14e88c119609426fa416/plot_geodesic_path.py
index 2bea6ff50..e70c60775 100644
--- a/_downloads/2c1d4ccc800c14e88c119609426fa416/plot_geodesic_path.py
+++ b/_downloads/2c1d4ccc800c14e88c119609426fa416/plot_geodesic_path.py
@@ -24,6 +24,8 @@
 surfs = [cortex.polyutils.Surface(*d)
          for d in cortex.db.get_surf(subject, "fiducial")]
 numl = surfs[0].pts.shape[0]
+numr = surfs[1].pts.shape[0]
+num_vertices = numl + numr
 
 # Now we need to pick the start and end points of the line we will draw
 pt_a = 100
@@ -33,12 +35,12 @@
 path = surfs[0].geodesic_path(pt_a, pt_b)
 
 # In order to plot this on the cortical surface, we need an array that is the
-# same size as the number of vertices in the left hemisphere
-path_data = np.zeros(numl)
+# same size as the number of vertices
+path_data = np.zeros(num_vertices) * np.nan
 for v in path:
     path_data[v] = 1
 
 # And now plot these distances onto the cortical surface
-path_verts = cortex.Vertex(path_data, subject, cmap="Blues_r")
-cortex.quickshow(path_verts, with_colorbar=False)
+path_verts = cortex.Vertex(path_data, subject, cmap="Reds", vmin=0, vmax=1)
+cortex.quickshow(path_verts, with_colorbar=False, with_curvature=True)
 plt.show()
diff --git a/_downloads/344a9c20fa2e5b85144a3143c290594a/static.ipynb b/_downloads/344a9c20fa2e5b85144a3143c290594a/static.ipynb
index 783b1a889..bd3c91e49 100644
--- a/_downloads/344a9c20fa2e5b85144a3143c290594a/static.ipynb
+++ b/_downloads/344a9c20fa2e5b85144a3143c290594a/static.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/34bc427b5d07c6d8727ed358794c8cc9/plot_voxel_distance_from_surface.ipynb b/_downloads/34bc427b5d07c6d8727ed358794c8cc9/plot_voxel_distance_from_surface.ipynb
index b5cc89c1d..bf3b4dd06 100644
--- a/_downloads/34bc427b5d07c6d8727ed358794c8cc9/plot_voxel_distance_from_surface.ipynb
+++ b/_downloads/34bc427b5d07c6d8727ed358794c8cc9/plot_voxel_distance_from_surface.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/387ca9e74b721456c024802f5fb1210c/plot_subsurfaces.ipynb b/_downloads/387ca9e74b721456c024802f5fb1210c/plot_subsurfaces.ipynb
index 362e2214f..4201e184b 100644
--- a/_downloads/387ca9e74b721456c024802f5fb1210c/plot_subsurfaces.ipynb
+++ b/_downloads/387ca9e74b721456c024802f5fb1210c/plot_subsurfaces.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -143,7 +132,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/38bd34ef15da8508933ae951daa9dfc6/plot_dropout.ipynb b/_downloads/38bd34ef15da8508933ae951daa9dfc6/plot_dropout.ipynb
index beadbe64f..32d688b3e 100644
--- a/_downloads/38bd34ef15da8508933ae951daa9dfc6/plot_dropout.ipynb
+++ b/_downloads/38bd34ef15da8508933ae951daa9dfc6/plot_dropout.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/3a293f5fef99cd1b3cbd8e7036b48449/plot_roi_voxel_mask.ipynb b/_downloads/3a293f5fef99cd1b3cbd8e7036b48449/plot_roi_voxel_mask.ipynb
index 20d52bfa3..0de064e2d 100644
--- a/_downloads/3a293f5fef99cd1b3cbd8e7036b48449/plot_roi_voxel_mask.ipynb
+++ b/_downloads/3a293f5fef99cd1b3cbd8e7036b48449/plot_roi_voxel_mask.ipynb
@@ -1,21 +1,10 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
       "source": [
-        "\n# Get ROI Voxel Mask\n\nGet proportion of each voxel that exists within a named ROI (this \nconstitutes a probability map for the ROI, with values ranging from\n0-1). Plot this probablistic roi mask onto a flatmap. \n\nIn order for this to work, the specified ROI must exist in the\noverlays.svg file in the pycortex filestore for this subject.\n"
+        "\n# Get ROI Voxel Mask\n\nGet proportion of each voxel that exists within a named ROI (this \nconstitutes a probability map for the ROI, with values ranging from\n0-1). Plot this probabilistic roi mask onto a flatmap. \n\nIn order for this to work, the specified ROI must exist in the\noverlays.svg file in the pycortex filestore for this subject.\n"
       ]
     },
     {
@@ -26,7 +15,7 @@
       },
       "outputs": [],
       "source": [
-        "import cortex\nimport matplotlib.pyplot as plt\n\nsubject = \"S1\"\nxfm = \"fullhead\"\nroi = \"EBA\"\n\n# Get the map of which voxels are inside of our ROI\nroi_masks = cortex.utils.get_roi_masks(subject, xfm, \n                                       roi_list=[roi],\n                                       gm_sampler='cortical-conservative', # Select only voxels mostly within cortex\n                                       split_lr=False, # No separate left/right ROIs\n                                       threshold=None, # Leave roi mask values as probabilites / fractions\n                                       return_dict=True\n                                       )\n\n# Plot the mask for one ROI onto a flatmap\nroi_data = cortex.Volume(roi_masks[roi], subject, xfm, \n                         vmin=0, # This is a probability mask, so only\n                         vmax=1, # so scale btw zero and one\n                         cmap=\"inferno\", # For pretty\n                         )\n\ncortex.quickflat.make_figure(roi_data,\n                             thick=1, # select a single depth (btw white matter & pia)\n                             sampler='nearest', # no interpolation\n                             with_curvature=True,\n                             with_colorbar=True,\n                             )\n\nplt.show()"
+        "import cortex\nimport matplotlib.pyplot as plt\n\nsubject = \"S1\"\nxfm = \"fullhead\"\nroi = \"EBA\"\n\n# Get the map of which voxels are inside of our ROI\nroi_masks = cortex.utils.get_roi_masks(subject, xfm, \n                                       roi_list=[roi],\n                                       gm_sampler='cortical-conservative', # Select only voxels mostly within cortex\n                                       split_lr=False, # No separate left/right ROIs\n                                       threshold=None, # Leave roi mask values as probabilities / fractions\n                                       return_dict=True\n                                       )\n\n# Plot the mask for one ROI onto a flatmap\nroi_data = cortex.Volume(roi_masks[roi], subject, xfm, \n                         vmin=0, # This is a probability mask, so only\n                         vmax=1, # so scale btw zero and one\n                         cmap=\"inferno\", # For pretty\n                         )\n\ncortex.quickflat.make_figure(roi_data,\n                             thick=1, # select a single depth (btw white matter & pia)\n                             sampler='nearest', # no interpolation\n                             with_curvature=True,\n                             with_colorbar=True,\n                             )\n\nplt.show()"
       ]
     }
   ],
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/3dca224e23400dbb33007465a7b359a6/plot_connected_vertices.ipynb b/_downloads/3dca224e23400dbb33007465a7b359a6/plot_connected_vertices.ipynb
index 14b5f117b..3f936201d 100644
--- a/_downloads/3dca224e23400dbb33007465a7b359a6/plot_connected_vertices.ipynb
+++ b/_downloads/3dca224e23400dbb33007465a7b359a6/plot_connected_vertices.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/42acd7dd246f3d3b2522140c0edb86ef/retinotopy_webgl.ipynb b/_downloads/42acd7dd246f3d3b2522140c0edb86ef/retinotopy_webgl.ipynb
index 850be8134..0f081b769 100644
--- a/_downloads/42acd7dd246f3d3b2522140c0edb86ef/retinotopy_webgl.ipynb
+++ b/_downloads/42acd7dd246f3d3b2522140c0edb86ef/retinotopy_webgl.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -26,7 +15,7 @@
       },
       "outputs": [],
       "source": [
-        "import cortex\ntry: #  python 2\n    from urllib import urlretrieve\nexcept ImportError:  # python 3\n    from urllib.request import urlretrieve\n\n\n# Download and load in retinotopy data\n_ = urlretrieve(\"http://gallantlab.org/pycortex/S1_retinotopy.hdf\",\n                \"S1_retinotopy.hdf\")\nret_data = cortex.load(\"S1_retinotopy.hdf\")\n\n# Open the webviewer\ncortex.webshow(ret_data)"
+        "import cortex\nfrom urllib.request import urlretrieve\n\n\n# Download and load in retinotopy data\n_ = urlretrieve(\n    \"https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf\", \n    \"S1_retinotopy.hdf\"\n)\nret_data = cortex.load(\"S1_retinotopy.hdf\")\n\n# Open the webviewer\ncortex.webshow(ret_data)"
       ]
     }
   ],
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/52e9abd80b9e9d8a38724eb135ea1ab6/multi_panels_plots.ipynb b/_downloads/52e9abd80b9e9d8a38724eb135ea1ab6/multi_panels_plots.ipynb
index 1b2e138fe..62aa4c878 100644
--- a/_downloads/52e9abd80b9e9d8a38724eb135ea1ab6/multi_panels_plots.ipynb
+++ b/_downloads/52e9abd80b9e9d8a38724eb135ea1ab6/multi_panels_plots.ipynb
@@ -1,21 +1,10 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
       "source": [
-        "\n# Multi-panels figures\n\nThe function `cortex.export.plot_panels` plots a number of 3d views of a given\nvolume, in the same matplotlib figure. It does that by saving a temporary image\nfor each view, and then aggregating them in the same figure.\n\nThe function needs to be run on a system with a display, since it will launch\na webgl viewer. The best way to get the expected results is to keep the webgl\nviewer visible during the process.\n\nThe selection of views and the aggregation is controled by a list of \"panels\".\nExamples of panels can be imported with:\n\n    from cortex.export import params_flatmap_lateral_medial\n    from cortex.export import params_occipital_triple_view\n"
+        "\n# Multi-panels figures\n\nThe function `cortex.export.plot_panels` plots a number of 3d views of a given\nvolume, in the same matplotlib figure. It does that by saving a temporary image\nfor each view, and then aggregating them in the same figure.\n\nThe function needs to be run on a system with a display, since it will launch\na webgl viewer. The best way to get the expected results is to keep the webgl\nviewer visible during the process.\n\nThe selection of views and the aggregation is controlled by a list of \"panels\".\nExamples of panels can be imported with:\n\n    from cortex.export import params_flatmap_lateral_medial\n    from cortex.export import params_occipital_triple_view\n"
       ]
     },
     {
@@ -118,7 +107,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/55ff50ca9850387e3d30490b06ab18eb/multi_panels_plots.py b/_downloads/55ff50ca9850387e3d30490b06ab18eb/multi_panels_plots.py
index 037de9f7c..87a544b90 100644
--- a/_downloads/55ff50ca9850387e3d30490b06ab18eb/multi_panels_plots.py
+++ b/_downloads/55ff50ca9850387e3d30490b06ab18eb/multi_panels_plots.py
@@ -11,7 +11,7 @@
 a webgl viewer. The best way to get the expected results is to keep the webgl
 viewer visible during the process.
 
-The selection of views and the aggregation is controled by a list of "panels".
+The selection of views and the aggregation is controlled by a list of "panels".
 Examples of panels can be imported with:
 
     from cortex.export import params_flatmap_lateral_medial
diff --git a/_downloads/56b9122102ee96a8240f7eef88bfd884/plot_roi_voxel_mask.py b/_downloads/56b9122102ee96a8240f7eef88bfd884/plot_roi_voxel_mask.py
index 32cf50904..b0747167b 100644
--- a/_downloads/56b9122102ee96a8240f7eef88bfd884/plot_roi_voxel_mask.py
+++ b/_downloads/56b9122102ee96a8240f7eef88bfd884/plot_roi_voxel_mask.py
@@ -5,7 +5,7 @@
 
 Get proportion of each voxel that exists within a named ROI (this 
 constitutes a probability map for the ROI, with values ranging from
-0-1). Plot this probablistic roi mask onto a flatmap. 
+0-1). Plot this probabilistic roi mask onto a flatmap. 
 
 In order for this to work, the specified ROI must exist in the
 overlays.svg file in the pycortex filestore for this subject.
@@ -23,7 +23,7 @@
                                        roi_list=[roi],
                                        gm_sampler='cortical-conservative', # Select only voxels mostly within cortex
                                        split_lr=False, # No separate left/right ROIs
-                                       threshold=None, # Leave roi mask values as probabilites / fractions
+                                       threshold=None, # Leave roi mask values as probabilities / fractions
                                        return_dict=True
                                        )
 
diff --git a/_downloads/598490201234cf5d8e4a3f5a8dc8c372/plot_retinotopy_flatmap.ipynb b/_downloads/598490201234cf5d8e4a3f5a8dc8c372/plot_retinotopy_flatmap.ipynb
index 519c5d89f..ee5ff2d3d 100644
--- a/_downloads/598490201234cf5d8e4a3f5a8dc8c372/plot_retinotopy_flatmap.ipynb
+++ b/_downloads/598490201234cf5d8e4a3f5a8dc8c372/plot_retinotopy_flatmap.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -26,7 +15,7 @@
       },
       "outputs": [],
       "source": [
-        "import six\nimport cortex\nimport matplotlib.pyplot as plt\nif six.PY2:\n    from urllib import urlretrieve\nelif six.PY3:\n    from urllib.request import urlretrieve\n\n\n# Download the dataset and load it\n_ = urlretrieve(\"http://gallantlab.org/pycortex/S1_retinotopy.hdf\",\n                \"S1_retinotopy.hdf\")\nret_data = cortex.load(\"S1_retinotopy.hdf\")\n\n# The retinotopy data has to be divided into left and right hemispheres\nleft_data = ret_data.angle_left\ncortex.quickshow(left_data, with_curvature=True, \n\t\t\t\t\t\t\tcurvature_contrast=0.5, \n\t\t\t\t\t\t\tcurvature_brightness=0.5, \n\t\t\t\t\t\t\tcurvature_threshold=True)\nplt.show()\n\nright_data = ret_data.angle_right\ncortex.quickshow(right_data, with_curvature=True, \n\t\t\t\t\t\t\t curvature_contrast=0.5, \n\t\t\t\t\t\t\t curvature_brightness=0.5, \n\t\t\t\t\t\t\t curvature_threshold=True)\nplt.show()"
+        "import cortex\nimport matplotlib.pyplot as plt\nfrom urllib.request import urlretrieve\n\n\n# Download the dataset and load it\n_ = urlretrieve(\n    \"https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf\", \n    \"S1_retinotopy.hdf\"\n)\nret_data = cortex.load(\"S1_retinotopy.hdf\")\n\n# The retinotopy data has to be divided into left and right hemispheres\nleft_data = ret_data.angle_left\ncortex.quickshow(left_data, with_curvature=True, \n\t\t\t\t\t\t\tcurvature_contrast=0.5, \n\t\t\t\t\t\t\tcurvature_brightness=0.5, \n\t\t\t\t\t\t\tcurvature_threshold=True)\nplt.show()\n\nright_data = ret_data.angle_right\ncortex.quickshow(right_data, with_curvature=True, \n\t\t\t\t\t\t\t curvature_contrast=0.5, \n\t\t\t\t\t\t\t curvature_brightness=0.5, \n\t\t\t\t\t\t\t curvature_threshold=True)\nplt.show()"
       ]
     }
   ],
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/5bd5d1eeadaf8c455dfa68ed54b8beaf/plot_make_figure.ipynb b/_downloads/5bd5d1eeadaf8c455dfa68ed54b8beaf/plot_make_figure.ipynb
index ef2270e44..490bd83a6 100644
--- a/_downloads/5bd5d1eeadaf8c455dfa68ed54b8beaf/plot_make_figure.ipynb
+++ b/_downloads/5bd5d1eeadaf8c455dfa68ed54b8beaf/plot_make_figure.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/5df5411f55d86f3318a24a2deffe16fe/plot_retinotopy_flatmap.py b/_downloads/5df5411f55d86f3318a24a2deffe16fe/plot_retinotopy_flatmap.py
index 66145685f..332b642e7 100644
--- a/_downloads/5df5411f55d86f3318a24a2deffe16fe/plot_retinotopy_flatmap.py
+++ b/_downloads/5df5411f55d86f3318a24a2deffe16fe/plot_retinotopy_flatmap.py
@@ -9,24 +9,22 @@
 command that is included.
 
 
-.. _dataset: http://gallantlab.org/pycortex/S1_retinotopy.hdf
+.. _dataset: https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf
 
 S1 is the example subject that comes with pycortex, but if you want to plot
 data onto a different subject, you will need to have them in your filestore,
 and you will also need a flatmap for them.
 """
-import six
 import cortex
 import matplotlib.pyplot as plt
-if six.PY2:
-    from urllib import urlretrieve
-elif six.PY3:
-    from urllib.request import urlretrieve
+from urllib.request import urlretrieve
 
 
 # Download the dataset and load it
-_ = urlretrieve("http://gallantlab.org/pycortex/S1_retinotopy.hdf",
-                "S1_retinotopy.hdf")
+_ = urlretrieve(
+    "https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf", 
+    "S1_retinotopy.hdf"
+)
 ret_data = cortex.load("S1_retinotopy.hdf")
 
 # The retinotopy data has to be divided into left and right hemispheres
diff --git a/_downloads/5ec582772cb6c68c66aedc35da2aec38/show_config.ipynb b/_downloads/5ec582772cb6c68c66aedc35da2aec38/show_config.ipynb
index 6c8e30a76..ace4a5462 100644
--- a/_downloads/5ec582772cb6c68c66aedc35da2aec38/show_config.ipynb
+++ b/_downloads/5ec582772cb6c68c66aedc35da2aec38/show_config.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -118,7 +107,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/5eeaabd38fb75e278bcc70a86663c196/subject_to_mni.ipynb b/_downloads/5eeaabd38fb75e278bcc70a86663c196/subject_to_mni.ipynb
index 8dc3ba81f..d94c4c1a7 100644
--- a/_downloads/5eeaabd38fb75e278bcc70a86663c196/subject_to_mni.ipynb
+++ b/_downloads/5eeaabd38fb75e278bcc70a86663c196/subject_to_mni.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -26,7 +15,7 @@
       },
       "outputs": [],
       "source": [
-        "import cortex\n\n# First let's do this \"manually\", using cortex.mni\nfrom cortex import mni\n\nimport numpy as np\nnp.random.seed(1234)\n\n# This transform is gonna be from one specific functional space for a subject\n# which is defined by the transform (xfm)\ns1_to_mni = mni.compute_mni_transform(subject='S1', xfm='fullhead')\n# s1_to_mni is a 4x4 array describing the transformation in homogeneous corods\n\n# Transform data from subject to MNI space\n# first we will create a dataset to transform\ndata = cortex.Volume.random('S1', 'fullhead')\n\n# then transform it!\nmni_data = mni.transform_to_mni(data, s1_to_mni)\n# mni_data is a nibabel Nifti1Image\n\nmni_data_vol = mni_data.get_data() # the actual array, shape=(182,218,182)\n\n# That was the manual method. pycortex can also cache these transforms for you\n# if you get them using the pycortex database\ns1_to_mni_db = cortex.db.get_mnixfm('S1', 'fullhead')\n# this is the same as s1_to_mni, but will return instantly on subsequent calls"
+        "import cortex\n\n# First let's do this \"manually\", using cortex.mni\nfrom cortex import mni\n\nimport numpy as np\nnp.random.seed(1234)\n\n# This transform is gonna be from one specific functional space for a subject\n# which is defined by the transform (xfm)\ns1_to_mni = mni.compute_mni_transform(subject='S1', xfm='fullhead')\n# s1_to_mni is a 4x4 array describing the transformation in homogeneous corods\n\n# Transform data from subject to MNI space\n# first we will create a dataset to transform\ndata = cortex.Volume.random('S1', 'fullhead')\n\n# then transform it!\nmni_data = mni.transform_to_mni(data, s1_to_mni)\n# mni_data is a nibabel Nifti1Image\n\nmni_data_vol = mni_data.get_fdata() # the actual array, shape=(182,218,182)\n\n# That was the manual method. pycortex can also cache these transforms for you\n# if you get them using the pycortex database\ns1_to_mni_db = cortex.db.get_mnixfm('S1', 'fullhead')\n# this is the same as s1_to_mni, but will return instantly on subsequent calls"
       ]
     }
   ],
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/5f330fb3660509634926cd0332d7cbc6/plot_vertex.ipynb b/_downloads/5f330fb3660509634926cd0332d7cbc6/plot_vertex.ipynb
index d3b932661..32817d081 100644
--- a/_downloads/5f330fb3660509634926cd0332d7cbc6/plot_vertex.ipynb
+++ b/_downloads/5f330fb3660509634926cd0332d7cbc6/plot_vertex.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/6346ec4b05719b3c67f1d74a7c94ee9d/plot_rois.ipynb b/_downloads/6346ec4b05719b3c67f1d74a7c94ee9d/plot_rois.ipynb
index 3b16fd994..bc5823014 100644
--- a/_downloads/6346ec4b05719b3c67f1d74a7c94ee9d/plot_rois.ipynb
+++ b/_downloads/6346ec4b05719b3c67f1d74a7c94ee9d/plot_rois.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/638db29a2498956b03e341d19f7c71df/plot_interpolate_data.ipynb b/_downloads/638db29a2498956b03e341d19f7c71df/plot_interpolate_data.ipynb
index 78a9403fd..ebe594139 100644
--- a/_downloads/638db29a2498956b03e341d19f7c71df/plot_interpolate_data.ipynb
+++ b/_downloads/638db29a2498956b03e341d19f7c71df/plot_interpolate_data.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/6c38c4cf54bcaedfa877a93db30d0119/plot_volume.ipynb b/_downloads/6c38c4cf54bcaedfa877a93db30d0119/plot_volume.ipynb
index 510ebcdb4..61a749afe 100644
--- a/_downloads/6c38c4cf54bcaedfa877a93db30d0119/plot_volume.ipynb
+++ b/_downloads/6c38c4cf54bcaedfa877a93db30d0119/plot_volume.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
index 014a5c405..f481ab9a6 100644
Binary files a/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ
diff --git a/_downloads/712cc7a3913a50341baae9f6b000d797/plot_mosaic.ipynb b/_downloads/712cc7a3913a50341baae9f6b000d797/plot_mosaic.ipynb
index 0fccb125d..fe0b197ad 100644
--- a/_downloads/712cc7a3913a50341baae9f6b000d797/plot_mosaic.ipynb
+++ b/_downloads/712cc7a3913a50341baae9f6b000d797/plot_mosaic.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -26,7 +15,7 @@
       },
       "outputs": [],
       "source": [
-        "# sphinx_gallery_thumbnail_number = 3\n\nimport cortex\nimport matplotlib.pyplot as plt\n\n# load reference functional image for test purposes\nvolume_arr = cortex.db.get_xfm('S1', 'fullhead').reference.get_data().T\n# volume_arr is a (31,100,100) ndarray\n\n\n# with no args mosaic slices this volume in the first dimension\nplt.figure()\ncortex.mosaic(volume_arr)\n\n# slices along a different dimension can be plotted using the dim param\n# here coronal\nplt.figure()\ncortex.mosaic(volume_arr, dim=1)\n\n# kwargs are passed through to imshow\nplt.figure()\ncortex.mosaic(volume_arr, cmap=plt.cm.gray, vmin=0, vmax=1500)\n\n# mosaic always returns the mosaic image along with info about its shape\n# here show=False so we don't generate another plot\nmosaic_arr, (nwide, ntall) = cortex.mosaic(volume_arr, show=False)\n# mosaic_arr is 607 x 607, with nwide = 6, ntall = 6"
+        "# sphinx_gallery_thumbnail_number = 3\n\nimport cortex\nimport matplotlib.pyplot as plt\n\n# load reference functional image for test purposes\nvolume_arr = cortex.db.get_xfm('S1', 'fullhead').reference.get_fdata().T\n# volume_arr is a (31,100,100) ndarray\n\n\n# with no args mosaic slices this volume in the first dimension\nplt.figure()\ncortex.mosaic(volume_arr)\n\n# slices along a different dimension can be plotted using the dim param\n# here coronal\nplt.figure()\ncortex.mosaic(volume_arr, dim=1)\n\n# kwargs are passed through to imshow\nplt.figure()\ncortex.mosaic(volume_arr, cmap=plt.cm.gray, vmin=0, vmax=1500)\n\n# mosaic always returns the mosaic image along with info about its shape\n# here show=False so we don't generate another plot\nmosaic_arr, (nwide, ntall) = cortex.mosaic(volume_arr, show=False)\n# mosaic_arr is 607 x 607, with nwide = 6, ntall = 6"
       ]
     }
   ],
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/71eedfa1e15eeae1d50e837a5d00378d/plot_tissots_indicatrix.ipynb b/_downloads/71eedfa1e15eeae1d50e837a5d00378d/plot_tissots_indicatrix.ipynb
index ecff2a48f..2a9fdf8e4 100644
--- a/_downloads/71eedfa1e15eeae1d50e837a5d00378d/plot_tissots_indicatrix.ipynb
+++ b/_downloads/71eedfa1e15eeae1d50e837a5d00378d/plot_tissots_indicatrix.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/754fde0603a864be35c06d16e10d60fc/plot_vertex2D.py b/_downloads/754fde0603a864be35c06d16e10d60fc/plot_vertex2D.py
index f5f75ca99..5eb602bab 100644
--- a/_downloads/754fde0603a864be35c06d16e10d60fc/plot_vertex2D.py
+++ b/_downloads/754fde0603a864be35c06d16e10d60fc/plot_vertex2D.py
@@ -9,7 +9,7 @@
 
 The cortex.Vertex2D object is instantiated with two numpy arrays of the same
 size as the total number of vertices in that subject's flatmap. Each pixel is
-colored according to both vlaues given for the nearest vertex in the flatmap.
+colored according to both values given for the nearest vertex in the flatmap.
 
 Instead of random test data, you can replace these with any arrays that are
 the length of the all the vertices in the subject.
diff --git a/_downloads/774806b543a93da25908653d426c15c1/plot_cutouts.ipynb b/_downloads/774806b543a93da25908653d426c15c1/plot_cutouts.ipynb
index 0a760c45c..0b588c145 100644
--- a/_downloads/774806b543a93da25908653d426c15c1/plot_cutouts.ipynb
+++ b/_downloads/774806b543a93da25908653d426c15c1/plot_cutouts.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/7e89eee46d99514db8efb119976e80f8/upsample_to_fsaverage.ipynb b/_downloads/7e89eee46d99514db8efb119976e80f8/upsample_to_fsaverage.ipynb
new file mode 100644
index 000000000..c232a5237
--- /dev/null
+++ b/_downloads/7e89eee46d99514db8efb119976e80f8/upsample_to_fsaverage.ipynb
@@ -0,0 +1,43 @@
+{
+  "cells": [
+    {
+      "cell_type": "markdown",
+      "metadata": {},
+      "source": [
+        "\n# Upsample data from a lower resolution fsaverage template to fsaverage for visualization\n\nThis example shows how data in a lower resolution fsaverage template \n(e.g., fsaverage5 or fsaverage6) can be upsampled to the high resolution fsaverage \ntemplate for visualization.\n"
+      ]
+    },
+    {
+      "cell_type": "code",
+      "execution_count": null,
+      "metadata": {
+        "collapsed": false
+      },
+      "outputs": [],
+      "source": [
+        "import matplotlib.pyplot as plt\nimport numpy as np\n\nimport cortex\n\nsubject = \"fsaverage\"\n\n# First we check if the fsaverage template is already in the pycortex filestore. If not,\n# we download the template from the web and add it to the filestore.\nif subject not in cortex.db.subjects:\n    cortex.download_subject(subject)\n\n# Next we create some data on fsaverage5. Each hemisphere has 10242 vertices.\nn_vertices_fsaverage5 = 10242\ndata_fs5 = np.arange(1, n_vertices_fsaverage5 + 1)\n# We concatenate the data to itself to create a vector of length 20484, corresponding to\n# the two hemispheres together.\ndata_fs5 = np.concatenate((data_fs5, data_fs5))\n# Finally, we upsample the data to fsaverage.\ndata_fs7 = cortex.freesurfer.upsample_to_fsaverage(data_fs5, \"fsaverage5\")\n\n# Now that the data is in the fsaverage template, we can visualize it in PyCortex as any\n# other vertex dataset.\nvtx = cortex.Vertex(data_fs7, subject, vmin=0, vmax=n_vertices_fsaverage5, cmap=\"turbo\")\ncortex.quickshow(vtx, with_curvature=False, with_colorbar=False)\nplt.show()"
+      ]
+    }
+  ],
+  "metadata": {
+    "kernelspec": {
+      "display_name": "Python 3",
+      "language": "python",
+      "name": "python3"
+    },
+    "language_info": {
+      "codemirror_mode": {
+        "name": "ipython",
+        "version": 3
+      },
+      "file_extension": ".py",
+      "mimetype": "text/x-python",
+      "name": "python",
+      "nbconvert_exporter": "python",
+      "pygments_lexer": "ipython3",
+      "version": "3.9.19"
+    }
+  },
+  "nbformat": 4,
+  "nbformat_minor": 0
+}
\ No newline at end of file
diff --git a/_downloads/813e10fd805fb08e209798753ce45729/plot_volume_to_vertex.ipynb b/_downloads/813e10fd805fb08e209798753ce45729/plot_volume_to_vertex.ipynb
index 7b862fdeb..50c06113f 100644
--- a/_downloads/813e10fd805fb08e209798753ce45729/plot_volume_to_vertex.ipynb
+++ b/_downloads/813e10fd805fb08e209798753ce45729/plot_volume_to_vertex.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/85a1ab66519fd897a9f08ef615f4ac6b/plot_sulci.ipynb b/_downloads/85a1ab66519fd897a9f08ef615f4ac6b/plot_sulci.ipynb
index c427e69f8..89e2bdb42 100644
--- a/_downloads/85a1ab66519fd897a9f08ef615f4ac6b/plot_sulci.ipynb
+++ b/_downloads/85a1ab66519fd897a9f08ef615f4ac6b/plot_sulci.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/88045a5ca44795160381b3e40115ed85/plot_vertexRGB.ipynb b/_downloads/88045a5ca44795160381b3e40115ed85/plot_vertexRGB.ipynb
index 15959159f..14a9de97f 100644
--- a/_downloads/88045a5ca44795160381b3e40115ed85/plot_vertexRGB.ipynb
+++ b/_downloads/88045a5ca44795160381b3e40115ed85/plot_vertexRGB.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/8cf11f78d8c4186f5276b30e9ad94586/plot_vertex2D.ipynb b/_downloads/8cf11f78d8c4186f5276b30e9ad94586/plot_vertex2D.ipynb
index 9676ad756..24c0652cd 100644
--- a/_downloads/8cf11f78d8c4186f5276b30e9ad94586/plot_vertex2D.ipynb
+++ b/_downloads/8cf11f78d8c4186f5276b30e9ad94586/plot_vertex2D.ipynb
@@ -1,21 +1,10 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
       "source": [
-        "\n# Plot 2D Vertex Data\n\nThis plots example 2D vertex data onto an example subject, S1, onto a flatmap\nusing quickflat. In order for this to run, you have to have a flatmap for this\nsubject in the pycortex filestore.\n\nThe cortex.Vertex2D object is instantiated with two numpy arrays of the same\nsize as the total number of vertices in that subject's flatmap. Each pixel is\ncolored according to both vlaues given for the nearest vertex in the flatmap.\n\nInstead of random test data, you can replace these with any arrays that are\nthe length of the all the vertices in the subject.\n"
+        "\n# Plot 2D Vertex Data\n\nThis plots example 2D vertex data onto an example subject, S1, onto a flatmap\nusing quickflat. In order for this to run, you have to have a flatmap for this\nsubject in the pycortex filestore.\n\nThe cortex.Vertex2D object is instantiated with two numpy arrays of the same\nsize as the total number of vertices in that subject's flatmap. Each pixel is\ncolored according to both values given for the nearest vertex in the flatmap.\n\nInstead of random test data, you can replace these with any arrays that are\nthe length of the all the vertices in the subject.\n"
       ]
     },
     {
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/93df78f3116af947a5f503a4a33c9ddd/plot_make_svg.ipynb b/_downloads/93df78f3116af947a5f503a4a33c9ddd/plot_make_svg.ipynb
index c540a6ab5..3729bb7db 100644
--- a/_downloads/93df78f3116af947a5f503a4a33c9ddd/plot_make_svg.ipynb
+++ b/_downloads/93df78f3116af947a5f503a4a33c9ddd/plot_make_svg.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/967bde64d496491cb07a443c9ede7fc9/plot_advanced_compositing.ipynb b/_downloads/967bde64d496491cb07a443c9ede7fc9/plot_advanced_compositing.ipynb
index 21006a193..ef0c9efd6 100644
--- a/_downloads/967bde64d496491cb07a443c9ede7fc9/plot_advanced_compositing.ipynb
+++ b/_downloads/967bde64d496491cb07a443c9ede7fc9/plot_advanced_compositing.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/a075cfaa8cd8b107253dda362b33178e/plot_flatmap_distortion.ipynb b/_downloads/a075cfaa8cd8b107253dda362b33178e/plot_flatmap_distortion.ipynb
index afb5e4cec..c18536e36 100644
--- a/_downloads/a075cfaa8cd8b107253dda362b33178e/plot_flatmap_distortion.ipynb
+++ b/_downloads/a075cfaa8cd8b107253dda362b33178e/plot_flatmap_distortion.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/adbb113238e9e6eed6db37c575b87085/upsample_to_fsaverage.py b/_downloads/adbb113238e9e6eed6db37c575b87085/upsample_to_fsaverage.py
new file mode 100644
index 000000000..36593725e
--- /dev/null
+++ b/_downloads/adbb113238e9e6eed6db37c575b87085/upsample_to_fsaverage.py
@@ -0,0 +1,36 @@
+"""
+===================
+Upsample data from a lower resolution fsaverage template to fsaverage for visualization
+===================
+
+This example shows how data in a lower resolution fsaverage template 
+(e.g., fsaverage5 or fsaverage6) can be upsampled to the high resolution fsaverage 
+template for visualization.
+"""
+
+import matplotlib.pyplot as plt
+import numpy as np
+
+import cortex
+
+subject = "fsaverage"
+
+# First we check if the fsaverage template is already in the pycortex filestore. If not,
+# we download the template from the web and add it to the filestore.
+if subject not in cortex.db.subjects:
+    cortex.download_subject(subject)
+
+# Next we create some data on fsaverage5. Each hemisphere has 10242 vertices.
+n_vertices_fsaverage5 = 10242
+data_fs5 = np.arange(1, n_vertices_fsaverage5 + 1)
+# We concatenate the data to itself to create a vector of length 20484, corresponding to
+# the two hemispheres together.
+data_fs5 = np.concatenate((data_fs5, data_fs5))
+# Finally, we upsample the data to fsaverage.
+data_fs7 = cortex.freesurfer.upsample_to_fsaverage(data_fs5, "fsaverage5")
+
+# Now that the data is in the fsaverage template, we can visualize it in PyCortex as any
+# other vertex dataset.
+vtx = cortex.Vertex(data_fs7, subject, vmin=0, vmax=n_vertices_fsaverage5, cmap="turbo")
+cortex.quickshow(vtx, with_curvature=False, with_colorbar=False)
+plt.show()
diff --git a/_downloads/b2aa18c33412ed6283b23512eb23c3b9/retinotopy_webgl.py b/_downloads/b2aa18c33412ed6283b23512eb23c3b9/retinotopy_webgl.py
index 6cbe32fa6..167a07c5f 100644
--- a/_downloads/b2aa18c33412ed6283b23512eb23c3b9/retinotopy_webgl.py
+++ b/_downloads/b2aa18c33412ed6283b23512eb23c3b9/retinotopy_webgl.py
@@ -8,7 +8,7 @@
 dataset_, but that can also be done automatically through the `urllib`
 command that is included.
 
-.. _dataset: http://gallantlab.org/pycortex/S1_retinotopy.hdf
+.. _dataset: https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf
 
 S1 is the example subject that comes with pycortex, but if you want to plot
 data onto a different subject, you will need to have them in your filestore.
@@ -21,15 +21,14 @@
 """
 
 import cortex
-try: #  python 2
-    from urllib import urlretrieve
-except ImportError:  # python 3
-    from urllib.request import urlretrieve
+from urllib.request import urlretrieve
 
 
 # Download and load in retinotopy data
-_ = urlretrieve("http://gallantlab.org/pycortex/S1_retinotopy.hdf",
-                "S1_retinotopy.hdf")
+_ = urlretrieve(
+    "https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf", 
+    "S1_retinotopy.hdf"
+)
 ret_data = cortex.load("S1_retinotopy.hdf")
 
 # Open the webviewer
diff --git a/_downloads/bcb26d7471e165be66ecc1ea4a79a747/import_fmriprep.ipynb b/_downloads/bcb26d7471e165be66ecc1ea4a79a747/import_fmriprep.ipynb
index 43cdc1819..d6d00c547 100644
--- a/_downloads/bcb26d7471e165be66ecc1ea4a79a747/import_fmriprep.ipynb
+++ b/_downloads/bcb26d7471e165be66ecc1ea4a79a747/import_fmriprep.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/c47834bb21df7cc049ba6afc8a9f9184/plot_dataset_arithmetic.ipynb b/_downloads/c47834bb21df7cc049ba6afc8a9f9184/plot_dataset_arithmetic.ipynb
index 8164e92e2..864d9df1c 100644
--- a/_downloads/c47834bb21df7cc049ba6afc8a9f9184/plot_dataset_arithmetic.ipynb
+++ b/_downloads/c47834bb21df7cc049ba6afc8a9f9184/plot_dataset_arithmetic.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/c4a1569322d832cb845e73fb64382cd3/plot_volume2D.ipynb b/_downloads/c4a1569322d832cb845e73fb64382cd3/plot_volume2D.ipynb
index e8c76002a..6f72544b2 100644
--- a/_downloads/c4a1569322d832cb845e73fb64382cd3/plot_volume2D.ipynb
+++ b/_downloads/c4a1569322d832cb845e73fb64382cd3/plot_volume2D.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/c74b122a2f122b3931ba518c8dce3b97/mni_to_subject.ipynb b/_downloads/c74b122a2f122b3931ba518c8dce3b97/mni_to_subject.ipynb
index 4a8443b5e..024a7a01b 100644
--- a/_downloads/c74b122a2f122b3931ba518c8dce3b97/mni_to_subject.ipynb
+++ b/_downloads/c74b122a2f122b3931ba518c8dce3b97/mni_to_subject.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -26,7 +15,7 @@
       },
       "outputs": [],
       "source": [
-        "import cortex\n\n# First let's do this \"manually\", using cortex.mni\nfrom cortex import mni\n\nimport numpy as np\nnp.random.seed(1234)\n\n\n# This transform is gonna be from one specific functional space for a subject\n# which is defined by the transform (xfm)\ns1_to_mni = mni.compute_mni_transform(subject='S1', xfm='fullhead')\n# s1_to_mni is a 4x4 array describing the transformation in homogeneous corods\n\n# Transform data from MNI to subject space\n# first we will create a dataset to transform\n# this uses the implicitly created \"identity\" transform, which is used for data\n# in the native anatomical space (i.e. same dims as the base anatomical image,\n# and in the same space as the surface)\ndata = cortex.Volume.random('MNI', 'identity')\n\n# then transform it into the space defined by the 'fullhead' transform for 'S1'\nsubject_data = mni.transform_mni_to_subject('S1', 'fullhead', \n                                            data.data, s1_to_mni)\n# subject_data is a nibabel Nifti1Image\n\nsubject_data_vol = mni_data.get_data() # the actual array, shape=(100,100,31)\n\n# That was the manual method. pycortex can also cache these transforms for you\n# if you get them using the pycortex database\ns1_to_mni_db = cortex.db.get_mnixfm('S1', 'fullhead')\n# this is the same as s1_to_mni, but will return instantly on subsequent calls"
+        "import cortex\n\n# First let's do this \"manually\", using cortex.mni\nfrom cortex import mni\n\nimport numpy as np\nnp.random.seed(1234)\n\n\n# This transform is gonna be from one specific functional space for a subject\n# which is defined by the transform (xfm)\ns1_to_mni = mni.compute_mni_transform(subject='S1', xfm='fullhead')\n# s1_to_mni is a 4x4 array describing the transformation in homogeneous corods\n\n# Transform data from MNI to subject space\n# first we will create a dataset to transform\n# this uses the implicitly created \"identity\" transform, which is used for data\n# in the native anatomical space (i.e. same dims as the base anatomical image,\n# and in the same space as the surface)\ndata = cortex.Volume.random('MNI', 'identity')\n\n# then transform it into the space defined by the 'fullhead' transform for 'S1'\nsubject_data = mni.transform_mni_to_subject('S1', 'fullhead', \n                                            data.data, s1_to_mni)\n# subject_data is a nibabel Nifti1Image\n\nsubject_data_vol = mni_data.get_fdata() # the actual array, shape=(100,100,31)\n\n# That was the manual method. pycortex can also cache these transforms for you\n# if you get them using the pycortex database\ns1_to_mni_db = cortex.db.get_mnixfm('S1', 'fullhead')\n# this is the same as s1_to_mni, but will return instantly on subsequent calls"
       ]
     }
   ],
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/c83c63a97afe485326cd1fdab357fff8/plot_mosaic.py b/_downloads/c83c63a97afe485326cd1fdab357fff8/plot_mosaic.py
index 23c1e4ac2..2e8d363c6 100644
--- a/_downloads/c83c63a97afe485326cd1fdab357fff8/plot_mosaic.py
+++ b/_downloads/c83c63a97afe485326cd1fdab357fff8/plot_mosaic.py
@@ -14,7 +14,7 @@
 import matplotlib.pyplot as plt
 
 # load reference functional image for test purposes
-volume_arr = cortex.db.get_xfm('S1', 'fullhead').reference.get_data().T
+volume_arr = cortex.db.get_xfm('S1', 'fullhead').reference.get_fdata().T
 # volume_arr is a (31,100,100) ndarray
 
 
diff --git a/_downloads/cc502342f659cf0c536754003ffae538/dynamic_with_custom_template.ipynb b/_downloads/cc502342f659cf0c536754003ffae538/dynamic_with_custom_template.ipynb
index b1d29b54e..034cbd9ab 100644
--- a/_downloads/cc502342f659cf0c536754003ffae538/dynamic_with_custom_template.ipynb
+++ b/_downloads/cc502342f659cf0c536754003ffae538/dynamic_with_custom_template.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/d9b4e151ce75aace67a450abc15967b6/plot_make_png.ipynb b/_downloads/d9b4e151ce75aace67a450abc15967b6/plot_make_png.ipynb
index 3b6b75134..f035b87d4 100644
--- a/_downloads/d9b4e151ce75aace67a450abc15967b6/plot_make_png.ipynb
+++ b/_downloads/d9b4e151ce75aace67a450abc15967b6/plot_make_png.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/dafaff1c5c813c5150e44a7314911857/plot_volumeRGB.ipynb b/_downloads/dafaff1c5c813c5150e44a7314911857/plot_volumeRGB.ipynb
index 86f856fb9..981179517 100644
--- a/_downloads/dafaff1c5c813c5150e44a7314911857/plot_volumeRGB.ipynb
+++ b/_downloads/dafaff1c5c813c5150e44a7314911857/plot_volumeRGB.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/e01e45ad3d31a19a9f9f8dff3847cf51/plot_zoom_to_roi.ipynb b/_downloads/e01e45ad3d31a19a9f9f8dff3847cf51/plot_zoom_to_roi.ipynb
index e61efbe07..a287cb7b7 100644
--- a/_downloads/e01e45ad3d31a19a9f9f8dff3847cf51/plot_zoom_to_roi.ipynb
+++ b/_downloads/e01e45ad3d31a19a9f9f8dff3847cf51/plot_zoom_to_roi.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/efc62904d6eba92714248fce62fca073/single_dataset.ipynb b/_downloads/efc62904d6eba92714248fce62fca073/single_dataset.ipynb
index 97df1aafe..28303a57b 100644
--- a/_downloads/efc62904d6eba92714248fce62fca073/single_dataset.ipynb
+++ b/_downloads/efc62904d6eba92714248fce62fca073/single_dataset.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/f23fbcea3c616b715df90ee0cbac9bdf/plot_geodesic_path.ipynb b/_downloads/f23fbcea3c616b715df90ee0cbac9bdf/plot_geodesic_path.ipynb
index c929d6152..e2991776f 100644
--- a/_downloads/f23fbcea3c616b715df90ee0cbac9bdf/plot_geodesic_path.ipynb
+++ b/_downloads/f23fbcea3c616b715df90ee0cbac9bdf/plot_geodesic_path.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -26,7 +15,7 @@
       },
       "outputs": [],
       "source": [
-        "import cortex\nimport cortex.polyutils\nimport numpy as np\nimport matplotlib.pyplot as plt\n\nsubject = \"S1\"\n\n# First we need to import the surfaces for this subject\nsurfs = [cortex.polyutils.Surface(*d)\n         for d in cortex.db.get_surf(subject, \"fiducial\")]\nnuml = surfs[0].pts.shape[0]\n\n# Now we need to pick the start and end points of the line we will draw\npt_a = 100\npt_b = 50000\n\n# Then we find the geodesic path between these points\npath = surfs[0].geodesic_path(pt_a, pt_b)\n\n# In order to plot this on the cortical surface, we need an array that is the\n# same size as the number of vertices in the left hemisphere\npath_data = np.zeros(numl)\nfor v in path:\n    path_data[v] = 1\n\n# And now plot these distances onto the cortical surface\npath_verts = cortex.Vertex(path_data, subject, cmap=\"Blues_r\")\ncortex.quickshow(path_verts, with_colorbar=False)\nplt.show()"
+        "import cortex\nimport cortex.polyutils\nimport numpy as np\nimport matplotlib.pyplot as plt\n\nsubject = \"S1\"\n\n# First we need to import the surfaces for this subject\nsurfs = [cortex.polyutils.Surface(*d)\n         for d in cortex.db.get_surf(subject, \"fiducial\")]\nnuml = surfs[0].pts.shape[0]\nnumr = surfs[1].pts.shape[0]\nnum_vertices = numl + numr\n\n# Now we need to pick the start and end points of the line we will draw\npt_a = 100\npt_b = 50000\n\n# Then we find the geodesic path between these points\npath = surfs[0].geodesic_path(pt_a, pt_b)\n\n# In order to plot this on the cortical surface, we need an array that is the\n# same size as the number of vertices\npath_data = np.zeros(num_vertices) * np.nan\nfor v in path:\n    path_data[v] = 1\n\n# And now plot these distances onto the cortical surface\npath_verts = cortex.Vertex(path_data, subject, cmap=\"Reds\", vmin=0, vmax=1)\ncortex.quickshow(path_verts, with_colorbar=False, with_curvature=True)\nplt.show()"
       ]
     }
   ],
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
diff --git a/_downloads/fc8b05be95bda3f3431b5b5752f2c0fd/plot_geodesic_distance.ipynb b/_downloads/fc8b05be95bda3f3431b5b5752f2c0fd/plot_geodesic_distance.ipynb
index 5ff5df1de..44843378e 100644
--- a/_downloads/fc8b05be95bda3f3431b5b5752f2c0fd/plot_geodesic_distance.ipynb
+++ b/_downloads/fc8b05be95bda3f3431b5b5752f2c0fd/plot_geodesic_distance.ipynb
@@ -1,16 +1,5 @@
 {
   "cells": [
-    {
-      "cell_type": "code",
-      "execution_count": null,
-      "metadata": {
-        "collapsed": false
-      },
-      "outputs": [],
-      "source": [
-        "%matplotlib inline"
-      ]
-    },
     {
       "cell_type": "markdown",
       "metadata": {},
@@ -46,7 +35,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.9.12"
+      "version": "3.9.19"
     }
   },
   "nbformat": 4,
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index feef1b67d..cb2c49c30 100644
--- a/_modules/cortex/align.html
+++ b/_modules/cortex/align.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.align &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.align &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,12 +37,21 @@ <h1>Source code for cortex.align</h1><div class="highlight"><pre>
 <span></span><span class="sd">&quot;&quot;&quot;Contains functions for making alignments between functional data and the surface, or, finding where the brain is.</span>
 <span class="sd">&quot;&quot;&quot;</span>
 <span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">builtins</span> <span class="kn">import</span> <span class="nb">input</span>
+<span class="kn">import</span> <span class="nn">shutil</span>
+<span class="kn">import</span> <span class="nn">subprocess</span> <span class="k">as</span> <span class="nn">sp</span>
+<span class="kn">import</span> <span class="nn">tempfile</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
+<span class="kn">from</span> <span class="nn">builtins</span> <span class="kn">import</span> <span class="nb">input</span>
+
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
+<span class="kn">from</span> <span class="nn">.database</span> <span class="kn">import</span> <span class="n">db</span>
+<span class="kn">from</span> <span class="nn">.options</span> <span class="kn">import</span> <span class="n">config</span>
+<span class="kn">from</span> <span class="nn">.xfm</span> <span class="kn">import</span> <span class="n">Transform</span>
+
 
 <span class="k">def</span> <span class="nf">mayavi_manual</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">reference</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Open GUI for manually aligning a functional volume to the cortical surface for `subject`. This</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Open GUI for manually aligning a functional volume to the cortical surface for `subject`. This</span>
 <span class="sd">    creates a new transform called `xfm`. The name of a nibabel-readable file (e.g. nii) should be</span>
 <span class="sd">    supplied as `reference`. This image will be copied into the database.</span>
 
@@ -129,16 +137,18 @@ <h1>Source code for cortex.align</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">fs_manual</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Legacy name for cortex.align.manual. Please use that function, and see the help there.&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Legacy name for cortex.align.manual. Please use that function, and see the help there.&quot;&quot;&quot;</span>
     <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">((</span><span class="s2">&quot;Deprecated name - function has been renamed cortex.align.manual&quot;</span>
                    <span class="s2">&quot;This function name will be removed in a future release.&quot;</span>
         <span class="p">),</span> <span class="ne">DeprecationWarning</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">manual</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
 
 
-<div class="viewcode-block" id="manual"><a class="viewcode-back" href="../../generated/cortex.align.manual.html#cortex.align.manual">[docs]</a><span class="k">def</span> <span class="nf">manual</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">output_name</span><span class="o">=</span><span class="s2">&quot;register.lta&quot;</span><span class="p">,</span> <span class="n">wm_color</span><span class="o">=</span><span class="s2">&quot;yellow&quot;</span><span class="p">,</span> 
+<div class="viewcode-block" id="manual">
+<a class="viewcode-back" href="../../generated/cortex.align.manual.html#cortex.align.manual">[docs]</a>
+<span class="k">def</span> <span class="nf">manual</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">output_name</span><span class="o">=</span><span class="s2">&quot;register.lta&quot;</span><span class="p">,</span> <span class="n">wm_color</span><span class="o">=</span><span class="s2">&quot;yellow&quot;</span><span class="p">,</span> 
     <span class="n">pial_color</span><span class="o">=</span><span class="s2">&quot;blue&quot;</span><span class="p">,</span> <span class="n">wm_surface</span><span class="o">=</span><span class="s1">&#39;white&#39;</span><span class="p">,</span> <span class="n">noclean</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reference</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">inspect_only</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Open Freesurfer FreeView GUI for manually aligning/adjusting a functional</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Open Freesurfer FreeView GUI for manually aligning/adjusting a functional</span>
 <span class="sd">    volume to the cortical surface for `subject`. This creates a new transform</span>
 <span class="sd">    called `xfmname`. The name of a nibabel-readable file (e.g. NIfTI) should be</span>
 <span class="sd">    supplied as `reference`. This image will be copied into the database.</span>
@@ -192,11 +202,12 @@ <h1>Source code for cortex.align</h1><div class="highlight"><pre>
 <span class="sd">    Nothing unless noclean is true.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
+    <span class="kn">import</span> <span class="nn">shutil</span>
     <span class="kn">import</span> <span class="nn">subprocess</span> <span class="k">as</span> <span class="nn">sp</span>
     <span class="kn">import</span> <span class="nn">tempfile</span>
-    <span class="kn">import</span> <span class="nn">shutil</span>
-    <span class="kn">from</span> <span class="nn">.xfm</span> <span class="kn">import</span> <span class="n">Transform</span>
+
     <span class="kn">from</span> <span class="nn">.database</span> <span class="kn">import</span> <span class="n">db</span>
+    <span class="kn">from</span> <span class="nn">.xfm</span> <span class="kn">import</span> <span class="n">Transform</span>
 
     <span class="n">retval</span> <span class="o">=</span> <span class="kc">None</span>
 
@@ -272,122 +283,235 @@ <h1>Source code for cortex.align</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">retval</span></div>
 
 
-<div class="viewcode-block" id="automatic"><a class="viewcode-back" href="../../generated/cortex.align.automatic.html#cortex.align.automatic">[docs]</a><span class="k">def</span> <span class="nf">automatic</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">reference</span><span class="p">,</span> <span class="n">noclean</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">bbrtype</span><span class="o">=</span><span class="s2">&quot;signed&quot;</span><span class="p">,</span>
-              <span class="n">pre_flirt_args</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">use_fs_bbr</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">epi_mask</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">intermediate</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Create an automatic alignment using the FLIRT boundary-based alignment (BBR) from FSL.</span>
 
-<span class="sd">    If `noclean`, intermediate files will not be removed from /tmp. The `reference` image and resulting</span>
-<span class="sd">    transform called `xfmname` will be automatically stored in the database.</span>
+<span class="k">def</span> <span class="nf">automatic_fsl</span><span class="p">(</span>
+    <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">reference</span><span class="p">,</span> <span class="n">noclean</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">bbrtype</span><span class="o">=</span><span class="s2">&quot;signed&quot;</span><span class="p">,</span> <span class="n">pre_flirt_args</span><span class="o">=</span><span class="s2">&quot;&quot;</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Perform automatic alignment using the FLIRT boundary-based alignment (BBR) from </span>
+<span class="sd">    FSL. The `reference` image and resulting transform called `xfmname` will be </span>
+<span class="sd">    automatically stored in the database.</span>
 
-<span class="sd">    It&#39;s good practice to open up this transform afterward in the manual aligner and check how it worked.</span>
-<span class="sd">    Do that using the following (with the same `subject` and `xfmname` used here, no need for `reference`):</span>
-<span class="sd">    &gt; align.manual(subject, xfmname)</span>
+<span class="sd">    If `noclean` is set to True, intermediate files will not be removed from /tmp. </span>
 
-<span class="sd">    If automatic alignment gives you a very bad answer, you can try giving the pre-BBR FLIRT</span>
-<span class="sd">    some hints by passing &#39;-usesqform&#39; in as `pre_flirt_args`.</span>
+<span class="sd">    It&#39;s good practice to open up this transform afterward in the manual aligner and </span>
+<span class="sd">    check how it worked. Do that using the following code (passing the same `subject` </span>
+<span class="sd">    and `xfmname` used here, no need for `reference`):</span>
+
+<span class="sd">    &gt; cortex.align.manual(subject, xfmname)</span>
+
+<span class="sd">    If automatic alignment with FSL fails, you can try giving the pre-BBR FLIRT</span>
+<span class="sd">    some hints by passing &#39;-usesqform&#39; in as `pre_flirt_args`. Alternatively, you can </span>
+<span class="sd">    use `cortex.align.automatic` to use Freesurfer&#39;s bbregister, which tends to work</span>
+<span class="sd">    better than FSL.</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
 <span class="sd">    subject : str</span>
 <span class="sd">        Subject identifier.</span>
 <span class="sd">    xfmname : str</span>
-<span class="sd">        String identifying the transform to be created.</span>
+<span class="sd">        Name of the transform to be created and stored in the database.</span>
 <span class="sd">    reference : str</span>
-<span class="sd">        Path to a nibabel-readable image that will be used as the reference for this transform.</span>
-<span class="sd">        Usually, this is a single (3D) functional data volume.</span>
+<span class="sd">        Path to a nibabel-readable image that will be used as the reference for</span>
+<span class="sd">        this transform. Usually, this is a single (3D) functional data volume.</span>
 <span class="sd">    noclean : bool, optional</span>
-<span class="sd">        If True intermediate files will not be removed from /tmp (this is useful for debugging things),</span>
-<span class="sd">        and the returned value will be the name of the temp directory. Default False.</span>
+<span class="sd">        If True, intermediate files will not be removed from /tmp (this is useful</span>
+<span class="sd">        for debugging things), and the returned value will be the name of the</span>
+<span class="sd">        temp directory. Default False.</span>
 <span class="sd">    bbrtype : str, optional</span>
 <span class="sd">        The &#39;bbrtype&#39; argument that is passed to FLIRT.</span>
 <span class="sd">    pre_flirt_args : str, optional</span>
 <span class="sd">        Additional arguments that are passed to the FLIRT pre-alignment step (not BBR).</span>
-<span class="sd">    use_fs_bbr : bool, optional</span>
-<span class="sd">        If True will use freesurfer bbregister instead of FSL BBR. (default, True)</span>
-<span class="sd">    epi_mask : bool, optional</span>
-<span class="sd">        If True, and use_fs_bbr is True, then the flag --epi-mask is passed to bbregister</span>
-<span class="sd">        to mask out areas with spatial distortions. This setting is to be used whenever</span>
-<span class="sd">        the reference was not distortion corrected.</span>
-<span class="sd">    intermediate : str</span>
-<span class="sd">        Path to a nibabel-readable image that will be used as intermediate for the alignment.</span>
-<span class="sd">        Usually, this is a single (3D) functional data volume.</span>
 
 <span class="sd">    Returns</span>
 <span class="sd">    -------</span>
-<span class="sd">    Nothing unless `noclean` is True.</span>
+<span class="sd">    None or path to temp directory if `noclean` is True.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Defaults changed in pycortex 1.3. Now automatic alignment &quot;</span>
-                  <span class="s2">&quot;uses Freesurfer&#39;s bbregister and mri_coreg for &quot;</span>
-                  <span class="s2">&quot;initialization.&quot;</span><span class="p">)</span>
-    <span class="kn">import</span> <span class="nn">shlex</span>
-    <span class="kn">import</span> <span class="nn">shutil</span>
-    <span class="kn">import</span> <span class="nn">tempfile</span>
-    <span class="kn">import</span> <span class="nn">subprocess</span> <span class="k">as</span> <span class="nn">sp</span>
-
-    <span class="kn">from</span> <span class="nn">.database</span> <span class="kn">import</span> <span class="n">db</span>
-    <span class="kn">from</span> <span class="nn">.xfm</span> <span class="kn">import</span> <span class="n">Transform</span>
-    <span class="kn">from</span> <span class="nn">.options</span> <span class="kn">import</span> <span class="n">config</span>
-
-    <span class="n">fsl_prefix</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;basic&quot;</span><span class="p">,</span> <span class="s2">&quot;fsl_prefix&quot;</span><span class="p">)</span>
-    <span class="n">schfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">))[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">&quot;bbr.sch&quot;</span><span class="p">)</span>
-
     <span class="n">retval</span> <span class="o">=</span> <span class="kc">None</span>
     <span class="k">try</span><span class="p">:</span>
         <span class="n">cache</span> <span class="o">=</span> <span class="n">tempfile</span><span class="o">.</span><span class="n">mkdtemp</span><span class="p">()</span>
         <span class="n">absreference</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">reference</span><span class="p">)</span>
+        <span class="n">fsl_prefix</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;basic&quot;</span><span class="p">,</span> <span class="s2">&quot;fsl_prefix&quot;</span><span class="p">)</span>
+        <span class="n">schfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">))[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">&quot;bbr.sch&quot;</span><span class="p">)</span>
+        <span class="n">raw</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;raw&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_filename</span><span class="p">()</span>
+        <span class="n">bet</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;brainmask&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_filename</span><span class="p">()</span>
+        <span class="n">wmseg</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;whitematter&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_filename</span><span class="p">()</span>
+        <span class="c1"># Compute anatomical-to-epi transform</span>
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;FLIRT pre-alignment&quot;</span><span class="p">)</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="s2">&quot;</span><span class="si">{fslpre}</span><span class="s2">flirt -in </span><span class="si">{epi}</span><span class="s2"> -ref </span><span class="si">{bet}</span><span class="s2"> -dof 6 </span><span class="si">{pre_flirt_args}</span><span class="s2"> &quot;</span>
+            <span class="s2">&quot;-omat </span><span class="si">{cache}</span><span class="s2">/init.mat&quot;</span>
+        <span class="p">)</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+            <span class="n">fslpre</span><span class="o">=</span><span class="n">fsl_prefix</span><span class="p">,</span>
+            <span class="n">cache</span><span class="o">=</span><span class="n">cache</span><span class="p">,</span>
+            <span class="n">epi</span><span class="o">=</span><span class="n">absreference</span><span class="p">,</span>
+            <span class="n">bet</span><span class="o">=</span><span class="n">bet</span><span class="p">,</span>
+            <span class="n">pre_flirt_args</span><span class="o">=</span><span class="n">pre_flirt_args</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">shell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s2">&quot;Error calling initial FLIRT&quot;</span><span class="p">)</span>
+
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Running BBR&quot;</span><span class="p">)</span>
+        <span class="c1"># Run epi-to-anat transform (this is more stable than anat-to-epi in FSL!)</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span>
+            <span class="s2">&quot;</span><span class="si">{fslpre}</span><span class="s2">flirt -in </span><span class="si">{epi}</span><span class="s2"> -ref </span><span class="si">{raw}</span><span class="s2"> -dof 6 -cost bbr -wmseg </span><span class="si">{wmseg}</span><span class="s2"> &quot;</span>
+            <span class="s2">&quot;-init </span><span class="si">{cache}</span><span class="s2">/init.mat -omat </span><span class="si">{cache}</span><span class="s2">/out.mat -schedule </span><span class="si">{schfile}</span><span class="s2"> &quot;</span>
+            <span class="s2">&quot;-bbrtype </span><span class="si">{bbrtype}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+            <span class="n">fslpre</span><span class="o">=</span><span class="n">fsl_prefix</span><span class="p">,</span>
+            <span class="n">cache</span><span class="o">=</span><span class="n">cache</span><span class="p">,</span>
+            <span class="n">raw</span><span class="o">=</span><span class="n">bet</span><span class="p">,</span>
+            <span class="n">wmseg</span><span class="o">=</span><span class="n">wmseg</span><span class="p">,</span>
+            <span class="n">epi</span><span class="o">=</span><span class="n">absreference</span><span class="p">,</span>
+            <span class="n">schfile</span><span class="o">=</span><span class="n">schfile</span><span class="p">,</span>
+            <span class="n">bbrtype</span><span class="o">=</span><span class="n">bbrtype</span><span class="p">,</span>
+        <span class="p">)</span>
+        <span class="k">if</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">shell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s2">&quot;Error calling BBR flirt&quot;</span><span class="p">)</span>
 
-        <span class="k">if</span> <span class="n">use_fs_bbr</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Running freesurfer BBR&#39;</span><span class="p">)</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="s1">&#39;bbregister --s </span><span class="si">{sub}</span><span class="s1"> --mov </span><span class="si">{absref}</span><span class="s1"> --init-coreg --reg </span><span class="si">{cache}</span><span class="s1">/register.dat --t2&#39;</span>
-            <span class="k">if</span> <span class="n">epi_mask</span><span class="p">:</span>
-                <span class="n">cmd</span> <span class="o">+=</span> <span class="s1">&#39; --epi-mask&#39;</span>
-            <span class="k">if</span> <span class="n">intermediate</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">cmd</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; --int </span><span class="si">{</span><span class="n">intermediate</span><span class="si">}</span><span class="s1">&#39;</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">sub</span><span class="o">=</span><span class="n">subject</span><span class="p">,</span> <span class="n">absref</span><span class="o">=</span><span class="n">absreference</span><span class="p">,</span> <span class="n">cache</span><span class="o">=</span><span class="n">cache</span><span class="p">)</span>
-
-            <span class="k">if</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">shell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s1">&#39;Error calling freesurfer BBR!&#39;</span><span class="p">)</span>
+        <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">loadtxt</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cache</span><span class="p">,</span> <span class="s2">&quot;out.mat&quot;</span><span class="p">))</span>
+        <span class="c1"># Pass transform as FROM epi TO anat; transform will be inverted</span>
+        <span class="c1"># back to anat-to-epi, standard direction for pycortex internal</span>
+        <span class="c1"># storage by from_fsl</span>
+        <span class="n">xfm</span> <span class="o">=</span> <span class="n">Transform</span><span class="o">.</span><span class="n">from_fsl</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">absreference</span><span class="p">,</span> <span class="n">raw</span><span class="p">)</span>
+        <span class="n">xfm</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="s2">&quot;coord&quot;</span><span class="p">)</span>
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Success&quot;</span><span class="p">)</span>
 
-            <span class="n">xfm</span> <span class="o">=</span> <span class="n">Transform</span><span class="o">.</span><span class="n">from_freesurfer</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cache</span><span class="p">,</span> <span class="s2">&quot;register.dat&quot;</span><span class="p">),</span> <span class="n">absreference</span><span class="p">,</span> <span class="n">subject</span><span class="p">)</span>
+    <span class="k">finally</span><span class="p">:</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="n">noclean</span><span class="p">:</span>
+            <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="n">cache</span><span class="p">)</span>
         <span class="k">else</span><span class="p">:</span>
-            <span class="n">raw</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;raw&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">get_filename</span><span class="p">()</span>
-            <span class="n">bet</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;brainmask&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">get_filename</span><span class="p">()</span>
-            <span class="n">wmseg</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;whitematter&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">get_filename</span><span class="p">()</span>
-            <span class="c1">#Compute anatomical-to-epi transform</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;FLIRT pre-alignment&#39;</span><span class="p">)</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{fslpre}</span><span class="s1">flirt  -in </span><span class="si">{epi}</span><span class="s1"> -ref </span><span class="si">{bet}</span><span class="s1"> -dof 6 </span><span class="si">{pre_flirt_args}</span><span class="s1"> -omat </span><span class="si">{cache}</span><span class="s1">/init.mat&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
-               <span class="n">fslpre</span><span class="o">=</span><span class="n">fsl_prefix</span><span class="p">,</span> <span class="n">cache</span><span class="o">=</span><span class="n">cache</span><span class="p">,</span> <span class="n">epi</span><span class="o">=</span><span class="n">absreference</span><span class="p">,</span> <span class="n">bet</span><span class="o">=</span><span class="n">bet</span><span class="p">,</span> <span class="n">pre_flirt_args</span><span class="o">=</span><span class="n">pre_flirt_args</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">shell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-               <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s1">&#39;Error calling initial FLIRT&#39;</span><span class="p">)</span>
-
-
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Running BBR&#39;</span><span class="p">)</span>
-            <span class="c1"># Run epi-to-anat transform (this is more stable than anat-to-epi in FSL!)</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{fslpre}</span><span class="s1">flirt -in </span><span class="si">{epi}</span><span class="s1"> -ref </span><span class="si">{raw}</span><span class="s1"> -dof 6 -cost bbr -wmseg </span><span class="si">{wmseg}</span><span class="s1"> -init </span><span class="si">{cache}</span><span class="s1">/init.mat -omat </span><span class="si">{cache}</span><span class="s1">/out.mat -schedule </span><span class="si">{schfile}</span><span class="s1"> -bbrtype </span><span class="si">{bbrtype}</span><span class="s1">&#39;</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">fslpre</span><span class="o">=</span><span class="n">fsl_prefix</span><span class="p">,</span> <span class="n">cache</span><span class="o">=</span><span class="n">cache</span><span class="p">,</span> <span class="n">raw</span><span class="o">=</span><span class="n">bet</span><span class="p">,</span> <span class="n">wmseg</span><span class="o">=</span><span class="n">wmseg</span><span class="p">,</span> <span class="n">epi</span><span class="o">=</span><span class="n">absreference</span><span class="p">,</span> <span class="n">schfile</span><span class="o">=</span><span class="n">schfile</span><span class="p">,</span> <span class="n">bbrtype</span><span class="o">=</span><span class="n">bbrtype</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">shell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s1">&#39;Error calling BBR flirt&#39;</span><span class="p">)</span>
-
-            <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">loadtxt</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cache</span><span class="p">,</span> <span class="s2">&quot;out.mat&quot;</span><span class="p">))</span>
-            <span class="c1"># Pass transform as FROM epi TO anat; transform will be inverted</span>
-            <span class="c1"># back to anat-to-epi, standard direction for pycortex internal</span>
-            <span class="c1"># storage by from_fsl</span>
-            <span class="n">xfm</span> <span class="o">=</span> <span class="n">Transform</span><span class="o">.</span><span class="n">from_fsl</span><span class="p">(</span><span class="n">x</span><span class="p">,</span><span class="n">absreference</span><span class="p">,</span><span class="n">raw</span><span class="p">)</span>
+            <span class="n">retval</span> <span class="o">=</span> <span class="n">cache</span>
+    <span class="k">return</span> <span class="n">retval</span>
 
-        <span class="c1"># Save as pycortex &#39;coord&#39; transform</span>
-        <span class="n">xfm</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span><span class="n">xfmname</span><span class="p">,</span><span class="s1">&#39;coord&#39;</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Success&#39;</span><span class="p">)</span>
 
+<div class="viewcode-block" id="automatic">
+<a class="viewcode-back" href="../../generated/cortex.align.automatic.html#cortex.align.automatic">[docs]</a>
+<span class="k">def</span> <span class="nf">automatic</span><span class="p">(</span>
+    <span class="n">subject</span><span class="p">,</span>
+    <span class="n">xfmname</span><span class="p">,</span>
+    <span class="n">reference</span><span class="p">,</span>
+    <span class="n">init</span><span class="o">=</span><span class="s2">&quot;coreg&quot;</span><span class="p">,</span>
+    <span class="n">epi_mask</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+    <span class="n">intermediate</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">reference_contrast</span><span class="o">=</span><span class="s2">&quot;t2&quot;</span><span class="p">,</span>
+    <span class="n">noclean</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Perform automatic alignment using Freesurfer&#39;s boundary-based registration.</span>
+<span class="sd">    The `reference` image and resulting transform called `xfmname` will be automatically</span>
+<span class="sd">    stored in the database.</span>
+
+<span class="sd">    If `noclean` is set to True, intermediate files will not be removed from /tmp.</span>
+
+<span class="sd">    It&#39;s good practice to open up this transform afterward in the manual aligner and</span>
+<span class="sd">    check how it worked. Do that using the following code (passing the same `subject`</span>
+<span class="sd">    and `xfmname` used here, no need for `reference`):</span>
+
+<span class="sd">    &gt; cortex.align.manual(subject, xfmname)</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    subject : str</span>
+<span class="sd">        Subject identifier.</span>
+<span class="sd">    xfmname : str</span>
+<span class="sd">        Name of the transform to be created and stored in the database.</span>
+<span class="sd">    reference : str</span>
+<span class="sd">        Path to a nibabel-readable image that will be used as the reference for</span>
+<span class="sd">        this transform. Usually, this is a single (3D) functional data volume.</span>
+<span class="sd">    init : str, optional</span>
+<span class="sd">        One of &quot;coreg&quot;, &quot;fsl&quot;, &quot;header&quot;, or a path to a transform from the reference</span>
+<span class="sd">        volume to the anatomical volume.</span>
+<span class="sd">        Specifies the initialization method to obtain a first alignment that will be</span>
+<span class="sd">        refined with bbregister. Default is &quot;coreg&quot;, which uses Freesurfer&#39;s `mri_coreg`</span>
+<span class="sd">        and it generally performs best. Other options include &quot;fsl&quot; to use FSL&#39;s FLIRT</span>
+<span class="sd">        or &quot;header&quot; to assume that the reference and the anatomical are already close</span>
+<span class="sd">        enough (this option can be used when the reference and the anatomical are</span>
+<span class="sd">        acquired in the same session). Finally, you can also specify a path to a</span>
+<span class="sd">        transform file (in DAT or LTA format) that will be used as initialization.</span>
+<span class="sd">    epi_mask : bool, optional</span>
+<span class="sd">        If True, then the flag --epi-mask is passed to bbregister to mask out areas</span>
+<span class="sd">        with spatial distortions. This setting recommended whenever the reference was</span>
+<span class="sd">        not distortion corrected.</span>
+<span class="sd">    intermediate : str</span>
+<span class="sd">        Path to a nibabel-readable image that will be used as intermediate volume</span>
+<span class="sd">        for alignment. This is useful if the reference image has a small field-of-view</span>
+<span class="sd">        and a whole-brain image was acquired in the same session.</span>
+<span class="sd">    reference_contrast : str</span>
+<span class="sd">        Contrast of the reference image. This is used to determine the appropriate</span>
+<span class="sd">        contrast for the reference image in the bbregister command. Default is &quot;t2&quot;</span>
+<span class="sd">        (for BOLD): gray matter is brighter than white matter.</span>
+<span class="sd">        The alternative option is &quot;t1&quot;: white matter is brighter than gray matter.</span>
+<span class="sd">    noclean : bool, optional</span>
+<span class="sd">        If True, intermediate files will not be removed from /tmp (this is useful</span>
+<span class="sd">        for debugging things), and the returned value will be the name of the</span>
+<span class="sd">        temp directory. Default False.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    None or path to temp directory if `noclean` is True.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+        <span class="s2">&quot;Defaults changed in pycortex 1.2.8. Now automatic alignment uses Freesurfer&#39;s &quot;</span>
+        <span class="s2">&quot;bbregister and mri_coreg for initialization. If you want to use FSL&#39;s BBR, &quot;</span>
+        <span class="s2">&quot;use the function `cortex.align.automatic_fsl` instead.&quot;</span>
+    <span class="p">)</span>
+
+    <span class="n">retval</span> <span class="o">=</span> <span class="kc">None</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">cache</span> <span class="o">=</span> <span class="n">tempfile</span><span class="o">.</span><span class="n">mkdtemp</span><span class="p">()</span>
+        <span class="n">reference</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">reference</span><span class="p">)</span>
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Running freesurfer BBR&quot;</span><span class="p">)</span>
+        <span class="c1"># Start building the command</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;bbregister --s </span><span class="si">{</span><span class="n">subject</span><span class="si">}</span><span class="s2"> --mov </span><span class="si">{</span><span class="n">reference</span><span class="si">}</span><span class="s2"> --reg </span><span class="si">{</span><span class="n">cache</span><span class="si">}</span><span class="s2">/register.dat &quot;</span>
+        <span class="n">cmd</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot;--</span><span class="si">{</span><span class="n">reference_contrast</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">if</span> <span class="n">init</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;coreg&quot;</span><span class="p">,</span> <span class="s2">&quot;fsl&quot;</span><span class="p">,</span> <span class="s2">&quot;header&quot;</span><span class="p">]:</span>
+            <span class="n">cmd</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot; --init-</span><span class="si">{</span><span class="n">init</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">init</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">init</span><span class="p">)</span>
+            <span class="n">cmd</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot; --init-reg </span><span class="si">{</span><span class="n">init</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="k">if</span> <span class="n">epi_mask</span><span class="p">:</span>
+            <span class="n">cmd</span> <span class="o">+=</span> <span class="s2">&quot; --epi-mask&quot;</span>
+        <span class="k">if</span> <span class="n">intermediate</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">intermediate</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">intermediate</span><span class="p">)</span>
+            <span class="n">cmd</span> <span class="o">+=</span> <span class="sa">f</span><span class="s2">&quot; --int </span><span class="si">{</span><span class="n">intermediate</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">sub</span><span class="o">=</span><span class="n">subject</span><span class="p">,</span> <span class="n">absref</span><span class="o">=</span><span class="n">reference</span><span class="p">,</span> <span class="n">cache</span><span class="o">=</span><span class="n">cache</span><span class="p">)</span>
+
+        <span class="k">if</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="o">.</span><span class="n">split</span><span class="p">())</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s2">&quot;Error calling freesurfer BBR!&quot;</span><span class="p">)</span>
+
+        <span class="n">xfm</span> <span class="o">=</span> <span class="n">Transform</span><span class="o">.</span><span class="n">from_freesurfer</span><span class="p">(</span>
+            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cache</span><span class="p">,</span> <span class="s2">&quot;register.dat&quot;</span><span class="p">),</span> <span class="n">reference</span><span class="p">,</span> <span class="n">subject</span>
+        <span class="p">)</span>
+        <span class="c1"># Save as pycortex &#39;coord&#39; transform</span>
+        <span class="n">xfm</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="s2">&quot;coord&quot;</span><span class="p">)</span>
+        <span class="c1"># Load mincost to provide some information</span>
+        <span class="c1"># The four values stored in .mincost are</span>
+        <span class="c1"># 1. quality of the registration (0 to 1, with 0 is perfect)</span>
+        <span class="c1"># 2. mean of WM just below the surface</span>
+        <span class="c1"># 3. mean of GM just above the surface</span>
+        <span class="c1"># 4. percent contrast</span>
+        <span class="c1"># https://surfer.nmr.mgh.harvard.edu/fswiki/MultiModalTutorialV6.0/MultiModalRegistration</span>
+        <span class="c1"># Let&#39;s return only the quality of the registration</span>
+        <span class="n">mincost</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">loadtxt</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cache</span><span class="p">,</span> <span class="s2">&quot;register.dat.mincost&quot;</span><span class="p">))</span>
+        <span class="nb">print</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;bbregister finished with a mincost of </span><span class="si">{</span><span class="n">mincost</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="si">:</span><span class="s2">.2f</span><span class="si">}</span><span class="se">\n</span><span class="s2">&quot;</span>
+            <span class="s2">&quot;Values between 0 and 0.5 indicate a good registration.</span><span class="se">\n</span><span class="s2">&quot;</span>
+            <span class="s2">&quot;But you should manually inspect the alignment anyway.&quot;</span>
+        <span class="p">)</span>
     <span class="k">finally</span><span class="p">:</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">noclean</span><span class="p">:</span>
             <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="n">cache</span><span class="p">)</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="n">retval</span> <span class="o">=</span> <span class="n">cache</span>
-
     <span class="k">return</span> <span class="n">retval</span></div>
 
-<div class="viewcode-block" id="autotweak"><a class="viewcode-back" href="../../generated/cortex.align.autotweak.html#cortex.align.autotweak">[docs]</a><span class="k">def</span> <span class="nf">autotweak</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Tweak an alignment using the FLIRT boundary-based alignment (BBR) from FSL.</span>
+
+
+<div class="viewcode-block" id="autotweak">
+<a class="viewcode-back" href="../../generated/cortex.align.autotweak.html#cortex.align.autotweak">[docs]</a>
+<span class="k">def</span> <span class="nf">autotweak</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Tweak an alignment using the FLIRT boundary-based alignment (BBR) from FSL.</span>
 <span class="sd">    Ideally this function should actually use a limited search range, but it doesn&#39;t.</span>
 <span class="sd">    It&#39;s probably not very useful.</span>
 
@@ -400,12 +524,12 @@ <h1>Source code for cortex.align</h1><div class="highlight"><pre>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">import</span> <span class="nn">shlex</span>
     <span class="kn">import</span> <span class="nn">shutil</span>
-    <span class="kn">import</span> <span class="nn">tempfile</span>
     <span class="kn">import</span> <span class="nn">subprocess</span> <span class="k">as</span> <span class="nn">sp</span>
+    <span class="kn">import</span> <span class="nn">tempfile</span>
 
     <span class="kn">from</span> <span class="nn">.database</span> <span class="kn">import</span> <span class="n">db</span>
-    <span class="kn">from</span> <span class="nn">.xfm</span> <span class="kn">import</span> <span class="n">Transform</span>
     <span class="kn">from</span> <span class="nn">.options</span> <span class="kn">import</span> <span class="n">config</span>
+    <span class="kn">from</span> <span class="nn">.xfm</span> <span class="kn">import</span> <span class="n">Transform</span>
 
     <span class="n">fsl_prefix</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;basic&quot;</span><span class="p">,</span> <span class="s2">&quot;fsl_prefix&quot;</span><span class="p">)</span>
     <span class="n">schfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="vm">__file__</span><span class="p">))[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">&quot;bbr.sch&quot;</span><span class="p">)</span>
@@ -434,6 +558,7 @@ <h1>Source code for cortex.align</h1><div class="highlight"><pre>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Saved transform as (</span><span class="si">%s</span><span class="s1">, </span><span class="si">%s</span><span class="s1">)&#39;</span><span class="o">%</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">+</span><span class="s1">&#39;_auto&#39;</span><span class="p">))</span>
     <span class="k">finally</span><span class="p">:</span>
         <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="n">cache</span><span class="p">)</span></div>
+
 </pre></div>
 
           </div>
@@ -484,7 +609,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -492,8 +617,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -507,11 +632,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/anat.html b/_modules/cortex/anat.html
index d3e060eb3..3b74539ef 100644
--- a/_modules/cortex/anat.html
+++ b/_modules/cortex/anat.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.anat &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.anat &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -51,14 +50,19 @@ <h1>Source code for cortex.anat</h1><div class="highlight"><pre>
 <span class="n">fsl_prefix</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;basic&#39;</span><span class="p">,</span> <span class="s1">&#39;fsl_prefix&#39;</span><span class="p">)</span>
 
 
-<div class="viewcode-block" id="brainmask"><a class="viewcode-back" href="../../generated/cortex.anat.brainmask.html#cortex.anat.brainmask">[docs]</a><span class="k">def</span> <span class="nf">brainmask</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
+<div class="viewcode-block" id="brainmask">
+<a class="viewcode-back" href="../../generated/cortex.anat.brainmask.html#cortex.anat.brainmask">[docs]</a>
+<span class="k">def</span> <span class="nf">brainmask</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
     <span class="n">raw</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;raw&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">get_filename</span><span class="p">()</span>
     <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Brain masking anatomical...&#39;</span><span class="p">)</span>
     <span class="n">cmd</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">{fsl_prefix}</span><span class="s1">bet </span><span class="si">{raw}</span><span class="s1"> </span><span class="si">{bet}</span><span class="s1"> -B -v&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">fsl_prefix</span><span class="o">=</span><span class="n">fsl_prefix</span><span class="p">,</span> <span class="n">raw</span><span class="o">=</span><span class="n">raw</span><span class="p">,</span> <span class="n">bet</span><span class="o">=</span><span class="n">outfile</span><span class="p">)</span>
     <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Calling: </span><span class="si">%s</span><span class="s2">&quot;</span><span class="o">%</span><span class="n">cmd</span><span class="p">)</span>
     <span class="k">assert</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">shell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;Error calling fsl-bet&quot;</span></div>
 
-<div class="viewcode-block" id="whitematter"><a class="viewcode-back" href="../../generated/cortex.anat.whitematter.html#cortex.anat.whitematter">[docs]</a><span class="k">def</span> <span class="nf">whitematter</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">do_voxelize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+
+<div class="viewcode-block" id="whitematter">
+<a class="viewcode-back" href="../../generated/cortex.anat.whitematter.html#cortex.anat.whitematter">[docs]</a>
+<span class="k">def</span> <span class="nf">whitematter</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">do_voxelize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
     <span class="k">try</span><span class="p">:</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">do_voxelize</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">IOError</span>
@@ -72,7 +76,7 @@ <h1>Source code for cortex.anat</h1><div class="highlight"><pre>
             <span class="nb">print</span> <span class="p">(</span><span class="s2">&quot;Attempting to segment the brain with freesurfer...&quot;</span><span class="p">)</span>
             <span class="n">bet2</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;raw_wm&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">get_filename</span><span class="p">()</span>
             <span class="n">vol</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">{bet2}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">bet2</span><span class="o">=</span><span class="n">bet2</span><span class="p">))</span>
-            <span class="n">vol_data</span> <span class="o">=</span> <span class="n">vol</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span>
+            <span class="n">vol_data</span> <span class="o">=</span> <span class="n">vol</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span>
             <span class="nb">print</span><span class="p">(</span><span class="n">vol_data</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
             <span class="n">new_data</span> <span class="o">=</span> <span class="n">vol_data</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
             <span class="n">new_data</span><span class="p">[</span><span class="n">new_data</span><span class="o">==</span><span class="mi">250</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
@@ -87,7 +91,7 @@ <h1>Source code for cortex.anat</h1><div class="highlight"><pre>
             <span class="k">assert</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">shell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span> <span class="s2">&quot;Error calling fsl-fast&quot;</span>
 
             <span class="n">wmfl</span> <span class="o">=</span> <span class="s1">&#39;fast_pve_2&#39;</span>
-            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">{cache}</span><span class="s1">/</span><span class="si">{wmseg}</span><span class="s1">.nii.gz&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">cache</span><span class="o">=</span><span class="n">cache</span><span class="p">,</span><span class="n">wmseg</span><span class="o">=</span><span class="n">wmfl</span><span class="p">))</span><span class="o">.</span><span class="n">get_data</span><span class="p">())</span>
+            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">{cache}</span><span class="s1">/</span><span class="si">{wmseg}</span><span class="s1">.nii.gz&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">cache</span><span class="o">=</span><span class="n">cache</span><span class="p">,</span><span class="n">wmseg</span><span class="o">=</span><span class="n">wmfl</span><span class="p">))</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">())</span>
             <span class="k">if</span> <span class="n">arr</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
                 <span class="kn">from</span> <span class="nn">warnings</span> <span class="kn">import</span> <span class="n">warn</span>
                 <span class="n">warn</span><span class="p">(</span><span class="s1">&#39;&quot;fsl-fast&quot; with default settings failed. Trying no pve, no bias correction...&#39;</span><span class="p">)</span>
@@ -99,27 +103,31 @@ <h1>Source code for cortex.anat</h1><div class="highlight"><pre>
             <span class="k">assert</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">shell</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span> <span class="s1">&#39;Error calling fsl-maths&#39;</span>
 
             <span class="c1"># check generated mask succeeded</span>
-            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">{outfl}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">outfl</span><span class="o">=</span><span class="n">outfile</span><span class="p">))</span><span class="o">.</span><span class="n">get_data</span><span class="p">())</span>
+            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">{outfl}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">outfl</span><span class="o">=</span><span class="n">outfile</span><span class="p">))</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">())</span>
             <span class="k">assert</span> <span class="n">arr</span><span class="o">.</span><span class="n">sum</span><span class="p">()</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">,</span> <span class="s1">&#39;Error with generated whitematter mask.&#39;</span>
 
         <span class="k">finally</span><span class="p">:</span>
             <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="n">cache</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="voxelize"><a class="viewcode-back" href="../../generated/cortex.anat.voxelize.html#cortex.anat.voxelize">[docs]</a><span class="k">def</span> <span class="nf">voxelize</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">surf</span><span class="o">=</span><span class="s1">&#39;wm&#39;</span><span class="p">,</span> <span class="n">mp</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;Voxelize the whitematter surface to generate the white matter mask&#39;&#39;&#39;</span>
+
+<div class="viewcode-block" id="voxelize">
+<a class="viewcode-back" href="../../generated/cortex.anat.voxelize.html#cortex.anat.voxelize">[docs]</a>
+<span class="k">def</span> <span class="nf">voxelize</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">surf</span><span class="o">=</span><span class="s1">&#39;wm&#39;</span><span class="p">,</span> <span class="n">mp</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&#39;&#39;&#39;Voxelize the whitematter surface to generate the white matter mask&#39;&#39;&#39;</span>
     <span class="kn">import</span> <span class="nn">nibabel</span>
     <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">polyutils</span>
     <span class="n">nib</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;raw&quot;</span><span class="p">)</span>
     <span class="n">shape</span> <span class="o">=</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_shape</span><span class="p">()</span>
     <span class="n">vox</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">shape</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">bool</span><span class="p">)</span>
     <span class="k">for</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span> <span class="ow">in</span> <span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">surf</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="n">xfm</span> <span class="o">=</span> <span class="n">Transform</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">nib</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()),</span> <span class="n">nib</span><span class="p">)</span>
+        <span class="n">xfm</span> <span class="o">=</span> <span class="n">Transform</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">nib</span><span class="o">.</span><span class="n">affine</span><span class="p">),</span> <span class="n">nib</span><span class="p">)</span>
         <span class="n">vox</span> <span class="o">+=</span> <span class="n">polyutils</span><span class="o">.</span><span class="n">voxelize</span><span class="p">(</span><span class="n">xfm</span><span class="p">(</span><span class="n">pts</span><span class="p">),</span> <span class="n">polys</span><span class="p">,</span> <span class="n">shape</span><span class="o">=</span><span class="n">shape</span><span class="p">,</span> <span class="n">center</span><span class="o">=</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span><span class="mi">0</span><span class="p">,</span><span class="mi">0</span><span class="p">),</span> <span class="n">mp</span><span class="o">=</span><span class="n">mp</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="s1">&#39;bool&#39;</span><span class="p">)</span>
         
-    <span class="n">nib</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">vox</span><span class="p">,</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_affine</span><span class="p">(),</span> <span class="n">header</span><span class="o">=</span><span class="n">nib</span><span class="o">.</span><span class="n">get_header</span><span class="p">())</span>
+    <span class="n">nib</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">vox</span><span class="p">,</span> <span class="n">nib</span><span class="o">.</span><span class="n">affine</span><span class="p">,</span> <span class="n">header</span><span class="o">=</span><span class="n">nib</span><span class="o">.</span><span class="n">header</span><span class="p">)</span>
     <span class="n">nib</span><span class="o">.</span><span class="n">to_filename</span><span class="p">(</span><span class="n">outfile</span><span class="p">)</span>
 
     <span class="k">return</span> <span class="n">vox</span><span class="o">.</span><span class="n">T</span></div>
+
 </pre></div>
 
           </div>
@@ -170,7 +178,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -178,8 +186,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -193,11 +201,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/database.html b/_modules/cortex/database.html
index d49fe06f7..48a884c58 100644
--- a/_modules/cortex/database.html
+++ b/_modules/cortex/database.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.database &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.database &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,18 +37,19 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
 <span></span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">Contains a singleton object `db` of type `Database` which allows easy access to surface files, anatomical images, and transforms that are stored in the pycortex filestore.</span>
 <span class="sd">&quot;&quot;&quot;</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">copy</span>
+<span class="kn">import</span> <span class="nn">functools</span>
 <span class="kn">import</span> <span class="nn">glob</span>
 <span class="kn">import</span> <span class="nn">json</span>
+<span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">import</span> <span class="nn">re</span>
 <span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">warnings</span>
 <span class="kn">import</span> <span class="nn">tempfile</span>
-<span class="kn">import</span> <span class="nn">functools</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">hashlib</span> <span class="kn">import</span> <span class="n">sha1</span>
+<span class="kn">import</span> <span class="nn">warnings</span>
 <span class="kn">from</span> <span class="nn">builtins</span> <span class="kn">import</span> <span class="nb">input</span>
+<span class="kn">from</span> <span class="nn">hashlib</span> <span class="kn">import</span> <span class="n">sha1</span>
+
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
 <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">options</span>
 
@@ -141,7 +141,8 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
         <span class="k">raise</span> <span class="ne">AttributeError</span>
     
     <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="s2">&quot;Transforms: [</span><span class="si">{xfms}</span><span class="s2">]&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">xfms</span><span class="o">=</span><span class="s2">&quot;,&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">xfms</span><span class="p">))</span>
+        <span class="n">xfms</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">xfms</span><span class="p">))</span>
+        <span class="k">return</span> <span class="sa">f</span><span class="s2">&quot;Available transforms for </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">subject</span><span class="si">}</span><span class="s2">:</span><span class="se">\n</span><span class="si">{</span><span class="n">xfms</span><span class="si">}</span><span class="s2">&quot;</span>
 
 <span class="k">class</span> <span class="nc">XfmSet</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
     <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subj</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">filestore</span><span class="o">=</span><span class="n">default_filestore</span><span class="p">):</span>
@@ -171,13 +172,15 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
 
     <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">item</span><span class="p">):</span>
         <span class="kn">import</span> <span class="nn">nibabel</span>
-        <span class="k">return</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_masks</span><span class="p">[</span><span class="n">item</span><span class="p">])</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
+        <span class="k">return</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_masks</span><span class="p">[</span><span class="n">item</span><span class="p">])</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
 
     <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="s2">&quot;Masks: [</span><span class="si">{types}</span><span class="s2">]&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">types</span><span class="o">=</span><span class="s1">&#39;, &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_masks</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
 
-<div class="viewcode-block" id="Database"><a class="viewcode-back" href="../../generated/cortex.database.Database.html#cortex.database.Database">[docs]</a><span class="k">class</span> <span class="nc">Database</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="Database">
+<a class="viewcode-back" href="../../generated/cortex.database.Database.html#cortex.database.Database">[docs]</a>
+<span class="k">class</span> <span class="nc">Database</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Database()</span>
 
 <span class="sd">    Surface database</span>
@@ -186,10 +189,13 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
 <span class="sd">    ----------</span>
 <span class="sd">    This database object dynamically generates handles to all subjects within the filestore.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-<div class="viewcode-block" id="Database.__init__"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.__init__.html#cortex.database.Database.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filestore</span><span class="o">=</span><span class="n">default_filestore</span><span class="p">):</span>
+<div class="viewcode-block" id="Database.__init__">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.__init__.html#cortex.database.Database.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filestore</span><span class="o">=</span><span class="n">default_filestore</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">filestore</span> <span class="o">=</span> <span class="n">filestore</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_subjects</span> <span class="o">=</span> <span class="kc">None</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">auxfile</span> <span class="o">=</span> <span class="kc">None</span></div>
+
     
     <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="n">subjs</span> <span class="o">=</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">   &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">subjects</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
@@ -214,16 +220,22 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_subjects</span>
         <span class="n">subjs</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">listdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">))</span>
         <span class="n">subjs</span> <span class="o">=</span> <span class="p">[</span><span class="n">s</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">subjs</span> <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">s</span><span class="p">))]</span>
+        <span class="n">subjs</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">subjs</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_subjects</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">([(</span><span class="n">sname</span><span class="p">,</span> <span class="n">SubjectDB</span><span class="p">(</span><span class="n">sname</span><span class="p">,</span> <span class="n">filestore</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">))</span> <span class="k">for</span> <span class="n">sname</span> <span class="ow">in</span> <span class="n">subjs</span><span class="p">])</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_subjects</span>
 
-<div class="viewcode-block" id="Database.reload_subjects"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.reload_subjects.html#cortex.database.Database.reload_subjects">[docs]</a>    <span class="k">def</span> <span class="nf">reload_subjects</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Force the reload of the subject dictionary.&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="Database.reload_subjects">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.reload_subjects.html#cortex.database.Database.reload_subjects">[docs]</a>
+    <span class="k">def</span> <span class="nf">reload_subjects</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Force the reload of the subject dictionary.&quot;&quot;&quot;</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_subjects</span> <span class="o">=</span> <span class="kc">None</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">subjects</span></div>
 
-<div class="viewcode-block" id="Database.get_anat"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_anat.html#cortex.database.Database.get_anat">[docs]</a>    <span class="k">def</span> <span class="nf">get_anat</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;raw&#39;</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return anatomical information from the filestore. Anatomical information is defined as</span>
+
+<div class="viewcode-block" id="Database.get_anat">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_anat.html#cortex.database.Database.get_anat">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_anat</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;raw&#39;</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Return anatomical information from the filestore. Anatomical information is defined as</span>
 <span class="sd">        any volume-space anatomical information pertaining to the subject, such as T1 image,</span>
 <span class="sd">        white matter masks, etc. Volumes not found in the database will be automatically generated.</span>
 
@@ -259,10 +271,13 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="k">return</span> <span class="n">anatnib</span>
 
         <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">volume</span>
-        <span class="k">return</span> <span class="n">volume</span><span class="o">.</span><span class="n">anat2epispace</span><span class="p">(</span><span class="n">anatnib</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">),</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="n">order</span><span class="p">)</span></div>
+        <span class="k">return</span> <span class="n">volume</span><span class="o">.</span><span class="n">anat2epispace</span><span class="p">(</span><span class="n">anatnib</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">float</span><span class="p">),</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="n">order</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Database.get_surfinfo"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_surfinfo.html#cortex.database.Database.get_surfinfo">[docs]</a>    <span class="k">def</span> <span class="nf">get_surfinfo</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;curvature&quot;</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return auxillary surface information from the filestore. Surface info is defined as </span>
+
+<div class="viewcode-block" id="Database.get_surfinfo">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_surfinfo.html#cortex.database.Database.get_surfinfo">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_surfinfo</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;curvature&quot;</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Return auxiliary surface information from the filestore. Surface info is defined as </span>
 <span class="sd">        anatomical information specific to a subject in surface space. A Vertex class will be returned</span>
 <span class="sd">        as necessary. Info not found in the filestore will be automatically generated.</span>
 
@@ -312,11 +327,14 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="n">npz</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
             <span class="k">return</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">verts</span><span class="p">,</span> <span class="n">subject</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">npz</span></div>
+
     
-<div class="viewcode-block" id="Database.get_mri_surf2surf_matrix"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_mri_surf2surf_matrix.html#cortex.database.Database.get_mri_surf2surf_matrix">[docs]</a>    <span class="k">def</span> <span class="nf">get_mri_surf2surf_matrix</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">surface_type</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="s1">&#39;both&#39;</span><span class="p">,</span> 
+<div class="viewcode-block" id="Database.get_mri_surf2surf_matrix">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_mri_surf2surf_matrix.html#cortex.database.Database.get_mri_surf2surf_matrix">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_mri_surf2surf_matrix</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">surface_type</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="s1">&#39;both&#39;</span><span class="p">,</span> 
                                  <span class="n">fs_subj</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">target_subj</span><span class="o">=</span><span class="s1">&#39;fsaverage&#39;</span><span class="p">,</span> 
                                  <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Get matrix generated by surf2surf to map one subject&#39;s surface to another&#39;s</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get matrix generated by surf2surf to map one subject&#39;s surface to another&#39;s</span>
 
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -355,8 +373,12 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
         <span class="kn">from</span> <span class="nn">.utils</span> <span class="kn">import</span> <span class="n">load_sparse_array</span><span class="p">,</span> <span class="n">save_sparse_array</span>
         <span class="k">if</span> <span class="n">fs_subj</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">fs_subj</span> <span class="o">=</span> <span class="n">subject</span>
-        <span class="n">fpath</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_paths</span><span class="p">(</span><span class="n">subject</span><span class="p">)[</span><span class="s1">&#39;surf2surf&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">source</span><span class="o">=</span><span class="n">fs_subj</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="n">target_subj</span><span class="p">)</span>
-        <span class="c1"># Backward compatiblity</span>
+        <span class="n">fpath</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_paths</span><span class="p">(</span><span class="n">subject</span><span class="p">)[</span><span class="s1">&#39;surf2surf&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+            <span class="n">source</span><span class="o">=</span><span class="n">fs_subj</span><span class="p">,</span>
+            <span class="n">target</span><span class="o">=</span><span class="n">target_subj</span><span class="p">,</span>
+            <span class="n">surface_type</span><span class="o">=</span><span class="n">surface_type</span>
+        <span class="p">)</span>
+        <span class="c1"># Backward compatibility</span>
         <span class="n">fdir</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">fpath</span><span class="p">)</span>
         <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">fdir</span><span class="p">):</span>
             <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Creating surf2surf directory for subject </span><span class="si">%s</span><span class="s2">&quot;</span><span class="o">%</span><span class="p">(</span><span class="n">subject</span><span class="p">))</span>
@@ -376,12 +398,15 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
                 <span class="n">save_sparse_array</span><span class="p">(</span><span class="n">fpath</span><span class="p">,</span> <span class="n">tmp</span><span class="p">,</span> <span class="n">h</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">mats</span></div>
 
-<div class="viewcode-block" id="Database.get_overlay"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_overlay.html#cortex.database.Database.get_overlay">[docs]</a>    <span class="k">def</span> <span class="nf">get_overlay</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Database.get_overlay">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_overlay.html#cortex.database.Database.get_overlay">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_overlay</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">svgoverlay</span>
         <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;flat&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 
         <span class="n">paths</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_paths</span><span class="p">(</span><span class="n">subject</span><span class="p">)</span>
-        <span class="c1"># NOTE: This try loop is broken, in that it does nothing for the inteded </span>
+        <span class="c1"># NOTE: This try loop is broken, in that it does nothing for the intended </span>
         <span class="c1"># use case (loading an overlay from a packed subject) - needs fixing. </span>
         <span class="c1"># This hasn&#39;t come up yet due to very rare use of packed subjects.</span>
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">auxfile</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
@@ -403,9 +428,12 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="n">overlay_file</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">overlay_file</span> <span class="o">=</span> <span class="n">paths</span><span class="p">[</span><span class="s1">&#39;overlays&#39;</span><span class="p">]</span>
         <span class="k">return</span> <span class="n">svgoverlay</span><span class="o">.</span><span class="n">get_overlay</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">overlay_file</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span></div>
+
     
-<div class="viewcode-block" id="Database.save_xfm"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.save_xfm.html#cortex.database.Database.save_xfm">[docs]</a>    <span class="k">def</span> <span class="nf">save_xfm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">xfmtype</span><span class="o">=</span><span class="s2">&quot;magnet&quot;</span><span class="p">,</span> <span class="n">reference</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="Database.save_xfm">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.save_xfm.html#cortex.database.Database.save_xfm">[docs]</a>
+    <span class="k">def</span> <span class="nf">save_xfm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">xfmtype</span><span class="o">=</span><span class="s2">&quot;magnet&quot;</span><span class="p">,</span> <span class="n">reference</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Load a transform into the surface database. If the transform exists already, update it</span>
 <span class="sd">        If it does not exist, copy the reference epi into the filestore and insert.</span>
 
@@ -440,12 +468,12 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
                 <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Please specify a reference&quot;</span><span class="p">)</span>
             <span class="n">fpath</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s2">&quot;reference.nii.gz&quot;</span><span class="p">)</span>
             <span class="n">nib</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">reference</span><span class="p">)</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span>
+            <span class="n">data</span> <span class="o">=</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span>
             <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">3</span><span class="p">:</span>
                 <span class="kn">import</span> <span class="nn">warnings</span>
                 <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;You are importing a 4D dataset, automatically selecting the first volume as reference&#39;</span><span class="p">)</span>
                 <span class="n">data</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">out</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_affine</span><span class="p">(),</span> <span class="n">header</span><span class="o">=</span><span class="n">nib</span><span class="o">.</span><span class="n">get_header</span><span class="p">())</span>
+            <span class="n">out</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">nib</span><span class="o">.</span><span class="n">affine</span><span class="p">,</span> <span class="n">header</span><span class="o">=</span><span class="n">nib</span><span class="o">.</span><span class="n">header</span><span class="p">)</span>
             <span class="n">nibabel</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">out</span><span class="p">,</span> <span class="n">fpath</span><span class="p">)</span>
 
             <span class="n">jsdict</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
@@ -453,10 +481,10 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
         <span class="n">nib</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s2">&quot;reference.nii.gz&quot;</span><span class="p">))</span>
         <span class="k">if</span> <span class="n">xfmtype</span> <span class="o">==</span> <span class="s2">&quot;magnet&quot;</span><span class="p">:</span>
             <span class="n">jsdict</span><span class="p">[</span><span class="s1">&#39;magnet&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">xfm</span><span class="p">)</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
-            <span class="n">jsdict</span><span class="p">[</span><span class="s1">&#39;coord&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">nib</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()),</span> <span class="n">xfm</span><span class="p">)</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+            <span class="n">jsdict</span><span class="p">[</span><span class="s1">&#39;coord&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">nib</span><span class="o">.</span><span class="n">affine</span><span class="p">),</span> <span class="n">xfm</span><span class="p">)</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
         <span class="k">elif</span> <span class="n">xfmtype</span> <span class="o">==</span> <span class="s2">&quot;coord&quot;</span><span class="p">:</span>
             <span class="n">jsdict</span><span class="p">[</span><span class="s1">&#39;coord&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">xfm</span><span class="p">)</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
-            <span class="n">jsdict</span><span class="p">[</span><span class="s1">&#39;magnet&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">nib</span><span class="o">.</span><span class="n">get_affine</span><span class="p">(),</span> <span class="n">xfm</span><span class="p">)</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+            <span class="n">jsdict</span><span class="p">[</span><span class="s1">&#39;magnet&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">nib</span><span class="o">.</span><span class="n">affine</span><span class="p">,</span> <span class="n">xfm</span><span class="p">)</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
         
         <span class="n">files</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_paths</span><span class="p">(</span><span class="n">subject</span><span class="p">)</span>
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">files</span><span class="p">[</span><span class="s1">&#39;masks&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">xfmname</span><span class="o">=</span><span class="n">name</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;*&quot;</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
@@ -464,9 +492,12 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s2">&quot;w&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
             <span class="n">json</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">jsdict</span><span class="p">,</span> <span class="n">fp</span><span class="p">,</span> <span class="n">sort_keys</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">4</span><span class="p">)</span></div>
+
     
-<div class="viewcode-block" id="Database.get_xfm"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_xfm.html#cortex.database.Database.get_xfm">[docs]</a>    <span class="k">def</span> <span class="nf">get_xfm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">xfmtype</span><span class="o">=</span><span class="s2">&quot;coord&quot;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Retrieves a transform from the filestore</span>
+<div class="viewcode-block" id="Database.get_xfm">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_xfm.html#cortex.database.Database.get_xfm">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_xfm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">xfmtype</span><span class="o">=</span><span class="s2">&quot;coord&quot;</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Retrieves a transform from the filestore</span>
 
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -486,7 +517,7 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
 
         <span class="k">if</span> <span class="n">name</span> <span class="o">==</span> <span class="s2">&quot;identity&quot;</span><span class="p">:</span>
             <span class="n">nib</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s1">&#39;raw&#39;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Transform</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">nib</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()),</span> <span class="n">nib</span><span class="p">)</span>
+            <span class="k">return</span> <span class="n">Transform</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">nib</span><span class="o">.</span><span class="n">affine</span><span class="p">),</span> <span class="n">nib</span><span class="p">)</span>
 
         <span class="n">fname</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;transforms&quot;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;matrices.xfm&quot;</span><span class="p">)</span>
         <span class="n">reference</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;transforms&quot;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;reference.nii.gz&quot;</span><span class="p">)</span>
@@ -494,9 +525,12 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="n">xfmdict</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">Transform</span><span class="p">(</span><span class="n">xfmdict</span><span class="p">[</span><span class="n">xfmtype</span><span class="p">],</span> <span class="n">reference</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Database.get_surf"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_surf.html#cortex.database.Database.get_surf">[docs]</a>    <span class="nd">@_memo</span>
+
+<div class="viewcode-block" id="Database.get_surf">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_surf.html#cortex.database.Database.get_surf">[docs]</a>
+    <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">get_surf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">hemisphere</span><span class="o">=</span><span class="s2">&quot;both&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&#39;&#39;&#39;Return the surface pair for the given subject, surface type, and hemisphere.</span>
+<span class="w">        </span><span class="sd">&#39;&#39;&#39;Return the surface pair for the given subject, surface type, and hemisphere.</span>
 
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -558,7 +592,10 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
         <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">IOError</span></div>
 
-<div class="viewcode-block" id="Database.save_mask"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.save_mask.html#cortex.database.Database.save_mask">[docs]</a>    <span class="k">def</span> <span class="nf">save_mask</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">mask</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Database.save_mask">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.save_mask.html#cortex.database.Database.save_mask">[docs]</a>
+    <span class="k">def</span> <span class="nf">save_mask</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">mask</span><span class="p">):</span>
         <span class="n">fname</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_paths</span><span class="p">(</span><span class="n">subject</span><span class="p">)[</span><span class="s1">&#39;masks&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">type</span><span class="p">)</span>
         <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">fname</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s1">&#39;Refusing to overwrite existing mask&#39;</span><span class="p">)</span>
@@ -567,11 +604,14 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
         <span class="n">xfm</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_xfm</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
         <span class="k">if</span> <span class="n">xfm</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">mask</span><span class="o">.</span><span class="n">shape</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Invalid mask shape: must match shape of reference image&quot;</span><span class="p">)</span>
-        <span class="n">affine</span> <span class="o">=</span> <span class="n">xfm</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()</span>
+        <span class="n">affine</span> <span class="o">=</span> <span class="n">xfm</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">affine</span>
         <span class="n">nib</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">mask</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">uint8</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">affine</span><span class="p">)</span>
         <span class="n">nib</span><span class="o">.</span><span class="n">to_filename</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Database.get_mask"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_mask.html#cortex.database.Database.get_mask">[docs]</a>    <span class="k">def</span> <span class="nf">get_mask</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;thick&#39;</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Database.get_mask">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_mask.html#cortex.database.Database.get_mask">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_mask</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;thick&#39;</span><span class="p">):</span>
         <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="nb">type</span><span class="p">,</span> <span class="s1">&#39;decode&#39;</span><span class="p">):</span>
             <span class="nb">type</span> <span class="o">=</span> <span class="nb">type</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;utf8&#39;</span><span class="p">)</span>        
 
@@ -584,7 +624,7 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
         <span class="k">try</span><span class="p">:</span>
             <span class="kn">import</span> <span class="nn">nibabel</span>
             <span class="n">nib</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span> <span class="o">!=</span> <span class="mi">0</span>
+            <span class="k">return</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span> <span class="o">!=</span> <span class="mi">0</span>
         <span class="k">except</span> <span class="ne">IOError</span><span class="p">:</span>
             <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Mask not found, generating...&#39;</span><span class="p">)</span>
             <span class="kn">from</span> <span class="nn">.utils</span> <span class="kn">import</span> <span class="n">get_cortical_mask</span>
@@ -592,8 +632,11 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="bp">self</span><span class="o">.</span><span class="n">save_mask</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">mask</span><span class="p">)</span>
             <span class="k">return</span> <span class="n">mask</span></div>
 
-<div class="viewcode-block" id="Database.get_shared_voxels"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_shared_voxels.html#cortex.database.Database.get_shared_voxels">[docs]</a>    <span class="k">def</span> <span class="nf">get_shared_voxels</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="s2">&quot;both&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">use_astar</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Get an array indicating which vertices are inappropriately mapped to the same voxel.</span>
+
+<div class="viewcode-block" id="Database.get_shared_voxels">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_shared_voxels.html#cortex.database.Database.get_shared_voxels">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_shared_voxels</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="s2">&quot;both&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">use_astar</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get an array indicating which vertices are inappropriately mapped to the same voxel.</span>
 
 <span class="sd">        For a given transform and surface, returns an array containing a list of vertices which </span>
 <span class="sd">        are spatially distant on the cortical surface but that map to the same voxels (this occurs</span>
@@ -618,8 +661,11 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="n">voxels</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">shared_voxel_file</span><span class="p">)</span>
             <span class="k">return</span> <span class="n">voxels</span></div>
 
-<div class="viewcode-block" id="Database.get_coords"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_coords.html#cortex.database.Database.get_coords">[docs]</a>    <span class="k">def</span> <span class="nf">get_coords</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">hemisphere</span><span class="o">=</span><span class="s2">&quot;both&quot;</span><span class="p">,</span> <span class="n">magnet</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Calculate the coordinates of each vertex in the epi space by transforming the fiducial to the coordinate space</span>
+
+<div class="viewcode-block" id="Database.get_coords">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_coords.html#cortex.database.Database.get_coords">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_coords</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">hemisphere</span><span class="o">=</span><span class="s2">&quot;both&quot;</span><span class="p">,</span> <span class="n">magnet</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Calculate the coordinates of each vertex in the epi space by transforming the fiducial to the coordinate space</span>
 
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -649,7 +695,10 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">coords</span></div>
 
-<div class="viewcode-block" id="Database.get_cache"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_cache.html#cortex.database.Database.get_cache">[docs]</a>    <span class="k">def</span> <span class="nf">get_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Database.get_cache">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_cache.html#cortex.database.Database.get_cache">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
         <span class="k">try</span><span class="p">:</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">auxfile</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;fiducial&quot;</span><span class="p">)</span>
             <span class="c1">#generate the hashed name of the filename and subject as the directory name</span>
@@ -669,8 +718,11 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">cachedir</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">cachedir</span></div>
 
-<div class="viewcode-block" id="Database.clear_cache"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.clear_cache.html#cortex.database.Database.clear_cache">[docs]</a>    <span class="k">def</span> <span class="nf">clear_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">clear_all_caches</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Clears config-specified and default file caches for a subject.</span>
+
+<div class="viewcode-block" id="Database.clear_cache">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.clear_cache.html#cortex.database.Database.clear_cache">[docs]</a>
+    <span class="k">def</span> <span class="nf">clear_cache</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">clear_all_caches</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Clears config-specified and default file caches for a subject.</span>
 <span class="sd">        </span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">local_cachedir</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_cache</span><span class="p">(</span><span class="n">subject</span><span class="p">)</span>
@@ -690,8 +742,11 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
                 <span class="n">shutil</span><span class="o">.</span><span class="n">rmtree</span><span class="p">(</span><span class="n">default_cachedir</span><span class="p">)</span>
                 <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">default_cachedir</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Database.get_paths"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_paths.html#cortex.database.Database.get_paths">[docs]</a>    <span class="k">def</span> <span class="nf">get_paths</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Get a dictionary with a list of all candidate filenames for associated data, such as roi overlays, flatmap caches, and ctm caches.</span>
+
+<div class="viewcode-block" id="Database.get_paths">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_paths.html#cortex.database.Database.get_paths">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_paths</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get a dictionary with a list of all candidate filenames for associated data, such as roi overlays, flatmap caches, and ctm caches.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">surfpath</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;surfaces&quot;</span><span class="p">)</span>
 
@@ -723,12 +778,15 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="n">rois</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;rois.svg&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">subj</span><span class="o">=</span><span class="n">subject</span><span class="p">),</span>
             <span class="n">overlays</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;overlays.svg&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">subj</span><span class="o">=</span><span class="n">subject</span><span class="p">),</span>
             <span class="n">views</span><span class="o">=</span><span class="nb">sorted</span><span class="p">([</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">f</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">views</span><span class="p">]),</span>
-            <span class="n">surf2surf</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;surf2surf&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{source}</span><span class="s2">_to_</span><span class="si">{target}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="s2">&quot;matrices.hdf&quot;</span><span class="p">),</span>
+            <span class="n">surf2surf</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;surf2surf&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{source}</span><span class="s2">_to_</span><span class="si">{target}</span><span class="s2">&quot;</span><span class="p">,</span> <span class="s2">&quot;matrices_</span><span class="si">{surface_type}</span><span class="s2">.hdf&quot;</span><span class="p">),</span>
         <span class="p">)</span>
 
         <span class="k">return</span> <span class="n">filenames</span></div>
 
-<div class="viewcode-block" id="Database.make_subj"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.make_subj.html#cortex.database.Database.make_subj">[docs]</a>    <span class="k">def</span> <span class="nf">make_subj</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Database.make_subj">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.make_subj.html#cortex.database.Database.make_subj">[docs]</a>
+    <span class="k">def</span> <span class="nf">make_subj</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filestore</span><span class="p">,</span> <span class="n">subject</span><span class="p">)):</span>
             <span class="k">if</span> <span class="nb">input</span><span class="p">(</span><span class="s2">&quot;Are you sure you want to overwrite this existing subject?</span><span class="se">\n</span><span class="s2">&quot;</span>
                      <span class="s2">&quot;This will delete all files for this subject in the filestore, &quot;</span>
@@ -743,9 +801,12 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
                 <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
             <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
                 <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Error making directory </span><span class="si">%s</span><span class="s2">&quot;</span><span class="o">%</span><span class="n">path</span><span class="p">)</span></div>
+
     
-<div class="viewcode-block" id="Database.save_view"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.save_view.html#cortex.database.Database.save_view">[docs]</a>    <span class="k">def</span> <span class="nf">save_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">vw</span><span class="p">,</span><span class="n">subject</span><span class="p">,</span><span class="n">name</span><span class="p">,</span><span class="n">is_overwrite</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Set the view for an open webshow instance from a saved view</span>
+<div class="viewcode-block" id="Database.save_view">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.save_view.html#cortex.database.Database.save_view">[docs]</a>
+    <span class="k">def</span> <span class="nf">save_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">vw</span><span class="p">,</span><span class="n">subject</span><span class="p">,</span><span class="n">name</span><span class="p">,</span><span class="n">is_overwrite</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Set the view for an open webshow instance from a saved view</span>
 
 <span class="sd">        Sets the view in a currently-open cortex.webshow instance (with handle `vw`)</span>
 <span class="sd">        to the saved view named `name`</span>
@@ -772,8 +833,11 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">sName</span><span class="p">,</span><span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
             <span class="n">json</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">view</span><span class="p">,</span> <span class="n">fp</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Database.get_view"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_view.html#cortex.database.Database.get_view">[docs]</a>    <span class="k">def</span> <span class="nf">get_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">vw</span><span class="p">,</span><span class="n">subject</span><span class="p">,</span><span class="n">name</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Set the view for an open webshow instance from a saved view</span>
+
+<div class="viewcode-block" id="Database.get_view">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_view.html#cortex.database.Database.get_view">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">vw</span><span class="p">,</span><span class="n">subject</span><span class="p">,</span><span class="n">name</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Set the view for an open webshow instance from a saved view</span>
 
 <span class="sd">        Sets the view in a currently-open cortex.webshow instance (with handle `vw`)</span>
 <span class="sd">        to the saved view named `name`</span>
@@ -796,8 +860,11 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="n">view</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
         <span class="n">vw</span><span class="o">.</span><span class="n">_set_view</span><span class="p">(</span><span class="o">**</span><span class="n">view</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Database.get_mnixfm"><a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_mnixfm.html#cortex.database.Database.get_mnixfm">[docs]</a>    <span class="k">def</span> <span class="nf">get_mnixfm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">template</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Get transform from the space specified by `xfm` to MNI space.</span>
+
+<div class="viewcode-block" id="Database.get_mnixfm">
+<a class="viewcode-back" href="../../generated/Database/cortex.database.Database.get_mnixfm.html#cortex.database.Database.get_mnixfm">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_mnixfm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">template</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Get transform from the space specified by `xfm` to MNI space.</span>
 
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -845,7 +912,9 @@ <h1>Source code for cortex.database</h1><div class="highlight"><pre>
             <span class="c1"># Cache the result</span>
             <span class="n">mni</span><span class="o">.</span><span class="n">_save_fsl_xfm</span><span class="p">(</span><span class="n">mnixfmfile</span><span class="p">,</span> <span class="n">mnixfm</span><span class="p">)</span>
 
-        <span class="k">return</span> <span class="n">mnixfm</span></div></div>
+        <span class="k">return</span> <span class="n">mnixfm</span></div>
+</div>
+
 
 <span class="n">db</span> <span class="o">=</span> <span class="n">Database</span><span class="p">()</span>
 </pre></div>
@@ -898,7 +967,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -906,8 +975,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -921,11 +990,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/dataset/dataset.html b/_modules/cortex/dataset/dataset.html
index 66e816700..802fed45b 100644
--- a/_modules/cortex/dataset/dataset.html
+++ b/_modules/cortex/dataset/dataset.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.dataset.dataset &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
-    <script src="../../../_static/jquery.js"></script>
-    <script src="../../../_static/underscore.js"></script>
-    <script src="../../../_static/doctools.js"></script>
+    <title>cortex.dataset.dataset &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
    
   <link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -46,22 +45,29 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">.views</span> <span class="kn">import</span> <span class="n">normalize</span> <span class="k">as</span> <span class="n">_vnorm</span>
 <span class="kn">from</span> <span class="nn">.views</span> <span class="kn">import</span> <span class="n">Dataview</span><span class="p">,</span> <span class="n">Volume</span><span class="p">,</span> <span class="n">_from_hdf_data</span>
 
-<div class="viewcode-block" id="Dataset"><a class="viewcode-back" href="../../../generated/cortex.dataset.Dataset.html#cortex.dataset.Dataset">[docs]</a><span class="k">class</span> <span class="nc">Dataset</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="Dataset">
+<a class="viewcode-back" href="../../../generated/cortex.dataset.Dataset.html#cortex.dataset.Dataset">[docs]</a>
+<span class="k">class</span> <span class="nc">Dataset</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Wrapper for multiple data objects. This often does not need to be used </span>
 <span class="sd">    explicitly--for example, if a dictionary of data objects is passed to </span>
 <span class="sd">    `cortex.webshow`, it will automatically be converted into a `Dataset`.</span>
 
 <span class="sd">    All kwargs should be `BrainData` or `Dataset` objects.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-<div class="viewcode-block" id="Dataset.__init__"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.__init__.html#cortex.dataset.Dataset.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<div class="viewcode-block" id="Dataset.__init__">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.__init__.html#cortex.dataset.Dataset.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">h5</span> <span class="o">=</span> <span class="kc">None</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">views</span> <span class="o">=</span> <span class="p">{}</span>
 
         <span class="bp">self</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Dataset.append"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.append.html#cortex.dataset.Dataset.append">[docs]</a>    <span class="k">def</span> <span class="nf">append</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Add the `BrainData` or `Dataset` objects in `kwargs` into this </span>
+
+<div class="viewcode-block" id="Dataset.append">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.append.html#cortex.dataset.Dataset.append">[docs]</a>
+    <span class="k">def</span> <span class="nf">append</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Add the `BrainData` or `Dataset` objects in `kwargs` into this </span>
 <span class="sd">        dataset.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
@@ -76,6 +82,7 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="bp">self</span></div>
 
+
     <span class="k">def</span> <span class="fm">__getattr__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">attr</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">attr</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="p">:</span>
             <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span>
@@ -101,8 +108,27 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
     <span class="k">def</span> <span class="fm">__dir__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">views</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
 
-<div class="viewcode-block" id="Dataset.from_file"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.from_file.html#cortex.dataset.Dataset.from_file">[docs]</a>    <span class="nd">@classmethod</span>
-    <span class="k">def</span> <span class="nf">from_file</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">filename</span><span class="p">):</span>
+<div class="viewcode-block" id="Dataset.from_file">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.from_file.html#cortex.dataset.Dataset.from_file">[docs]</a>
+    <span class="nd">@classmethod</span>
+    <span class="k">def</span> <span class="nf">from_file</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Load a pycortex Dataset (cortex.Dataset class) from a file</span>
+
+<span class="sd">        Parameters</span>
+<span class="sd">        ----------</span>
+<span class="sd">        filename : str</span>
+<span class="sd">            .hdf file from which to load</span>
+<span class="sd">        subject : str, optional</span>
+<span class="sd">            string ID for pycortex subject, if subject name has changed</span>
+<span class="sd">            since the Dataset was created. `None` input assumes subject </span>
+<span class="sd">            name in saved file is a subject in your current pycortex</span>
+<span class="sd">            filestore. By default None</span>
+
+<span class="sd">        Returns</span>
+<span class="sd">        -------</span>
+<span class="sd">        Dataset</span>
+<span class="sd">            pycortex Dataset</span>
+<span class="sd">        &quot;&quot;&quot;</span>        
         <span class="n">ds</span> <span class="o">=</span> <span class="bp">cls</span><span class="p">()</span>
         <span class="n">ds</span><span class="o">.</span><span class="n">h5</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span>
 
@@ -113,14 +139,17 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
             <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;data&quot;</span><span class="p">,</span> <span class="s2">&quot;subjects&quot;</span><span class="p">,</span> <span class="s2">&quot;views&quot;</span><span class="p">):</span>
                 <span class="k">continue</span>
             <span class="k">try</span><span class="p">:</span>
-                <span class="n">ds</span><span class="o">.</span><span class="n">views</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">ds</span><span class="o">.</span><span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="p">)</span>
+                <span class="n">ds</span><span class="o">.</span><span class="n">views</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">ds</span><span class="o">.</span><span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">)</span>
             <span class="k">except</span> <span class="ne">KeyError</span><span class="p">:</span>
                 <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No metadata found for &quot;</span><span class="si">%s</span><span class="s1">&quot;, skipping...&#39;</span><span class="o">%</span><span class="n">name</span><span class="p">)</span>
 
         <span class="c1">#load up the views generated by pycortex</span>
         <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">node</span> <span class="ow">in</span> <span class="n">ds</span><span class="o">.</span><span class="n">h5</span><span class="p">[</span><span class="s1">&#39;views&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
             <span class="k">try</span><span class="p">:</span>
-                <span class="n">ds</span><span class="o">.</span><span class="n">views</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Dataview</span><span class="o">.</span><span class="n">from_hdf</span><span class="p">(</span><span class="n">node</span><span class="p">)</span>
+                <span class="n">ds</span><span class="o">.</span><span class="n">views</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Dataview</span><span class="o">.</span><span class="n">from_hdf</span><span class="p">(</span><span class="n">node</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">)</span>
+            <span class="k">except</span> <span class="ne">FileNotFoundError</span><span class="p">:</span>
+                <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Could not load file; old subject name? Try using `subject` kwarg to specify a current pycortex subject&quot;</span><span class="p">)</span>
+                <span class="k">raise</span>
             <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
                 <span class="kn">import</span> <span class="nn">traceback</span>
                 <span class="n">traceback</span><span class="o">.</span><span class="n">print_exc</span><span class="p">()</span>
@@ -128,9 +157,12 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
         <span class="n">db</span><span class="o">.</span><span class="n">auxfile</span> <span class="o">=</span> <span class="kc">None</span>
 
         <span class="k">return</span> <span class="n">ds</span></div>
+
         
-<div class="viewcode-block" id="Dataset.uniques"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.uniques.html#cortex.dataset.Dataset.uniques">[docs]</a>    <span class="k">def</span> <span class="nf">uniques</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">collapse</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the set of unique BrainData objects contained by this dataset&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="Dataset.uniques">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.uniques.html#cortex.dataset.Dataset.uniques">[docs]</a>
+    <span class="k">def</span> <span class="nf">uniques</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">collapse</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Return the set of unique BrainData objects contained by this dataset&quot;&quot;&quot;</span>
         <span class="n">uniques</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
         <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">view</span> <span class="ow">in</span> <span class="bp">self</span><span class="p">:</span>
             <span class="k">for</span> <span class="n">sv</span> <span class="ow">in</span> <span class="n">view</span><span class="o">.</span><span class="n">uniques</span><span class="p">(</span><span class="n">collapse</span><span class="o">=</span><span class="n">collapse</span><span class="p">):</span>
@@ -138,7 +170,10 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">uniques</span></div>
 
-<div class="viewcode-block" id="Dataset.save"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.save.html#cortex.dataset.Dataset.save">[docs]</a>    <span class="k">def</span> <span class="nf">save</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pack</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Dataset.save">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.save.html#cortex.dataset.Dataset.save">[docs]</a>
+    <span class="k">def</span> <span class="nf">save</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pack</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">filename</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">h5</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="s1">&#39;a&#39;</span><span class="p">)</span>
         <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">h5</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
@@ -167,7 +202,10 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
 
         <span class="bp">self</span><span class="o">.</span><span class="n">h5</span><span class="o">.</span><span class="n">flush</span><span class="p">()</span></div>
 
-<div class="viewcode-block" id="Dataset.get_surf"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.get_surf.html#cortex.dataset.Dataset.get_surf">[docs]</a>    <span class="k">def</span> <span class="nf">get_surf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="s1">&#39;both&#39;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Dataset.get_surf">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.get_surf.html#cortex.dataset.Dataset.get_surf">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_surf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="s1">&#39;both&#39;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">hemi</span> <span class="o">==</span> <span class="s1">&#39;both&#39;</span><span class="p">:</span>
             <span class="n">left</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="s2">&quot;lh&quot;</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="n">nudge</span><span class="p">)</span>
             <span class="n">right</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="s2">&quot;rh&quot;</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="n">nudge</span><span class="p">)</span>
@@ -194,21 +232,30 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
         <span class="k">except</span> <span class="p">(</span><span class="ne">KeyError</span><span class="p">,</span> <span class="ne">TypeError</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s1">&#39;Subject not found in package&#39;</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Dataset.get_xfm"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.get_xfm.html#cortex.dataset.Dataset.get_xfm">[docs]</a>    <span class="k">def</span> <span class="nf">get_xfm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Dataset.get_xfm">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.get_xfm.html#cortex.dataset.Dataset.get_xfm">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_xfm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">):</span>
         <span class="k">try</span><span class="p">:</span>
             <span class="n">group</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">h5</span><span class="p">[</span><span class="s1">&#39;subjects&#39;</span><span class="p">][</span><span class="n">subject</span><span class="p">][</span><span class="s1">&#39;transforms&#39;</span><span class="p">][</span><span class="n">xfmname</span><span class="p">]</span>
             <span class="k">return</span> <span class="n">Transform</span><span class="p">(</span><span class="n">group</span><span class="p">[</span><span class="s1">&#39;xfm&#39;</span><span class="p">][:],</span> <span class="nb">tuple</span><span class="p">(</span><span class="n">group</span><span class="p">[</span><span class="s1">&#39;xfm&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;shape&#39;</span><span class="p">]))</span>
         <span class="k">except</span> <span class="p">(</span><span class="ne">KeyError</span><span class="p">,</span> <span class="ne">TypeError</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s1">&#39;Transform not found in package&#39;</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Dataset.get_mask"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.get_mask.html#cortex.dataset.Dataset.get_mask">[docs]</a>    <span class="k">def</span> <span class="nf">get_mask</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">maskname</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Dataset.get_mask">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.get_mask.html#cortex.dataset.Dataset.get_mask">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_mask</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">maskname</span><span class="p">):</span>
         <span class="k">try</span><span class="p">:</span>
             <span class="n">group</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">h5</span><span class="p">[</span><span class="s1">&#39;subjects&#39;</span><span class="p">][</span><span class="n">subject</span><span class="p">][</span><span class="s1">&#39;transforms&#39;</span><span class="p">][</span><span class="n">xfmname</span><span class="p">][</span><span class="s1">&#39;masks&#39;</span><span class="p">]</span>
             <span class="k">return</span> <span class="n">group</span><span class="p">[</span><span class="n">maskname</span><span class="p">]</span>
         <span class="k">except</span> <span class="p">(</span><span class="ne">KeyError</span><span class="p">,</span> <span class="ne">TypeError</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">IOError</span><span class="p">(</span><span class="s1">&#39;Mask not found in package&#39;</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Dataset.get_overlay"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.get_overlay.html#cortex.dataset.Dataset.get_overlay">[docs]</a>    <span class="k">def</span> <span class="nf">get_overlay</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;rois&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Dataset.get_overlay">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.get_overlay.html#cortex.dataset.Dataset.get_overlay">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_overlay</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;rois&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="k">try</span><span class="p">:</span>
             <span class="n">group</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">h5</span><span class="p">[</span><span class="s1">&#39;subjects&#39;</span><span class="p">][</span><span class="n">subject</span><span class="p">]</span>
             <span class="k">if</span> <span class="nb">type</span> <span class="o">==</span> <span class="s2">&quot;rois&quot;</span><span class="p">:</span>
@@ -221,15 +268,20 @@ <h1>Source code for cortex.dataset.dataset</h1><div class="highlight"><pre>
 
         <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Unknown overlay type&#39;</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Dataset.prepend"><a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.prepend.html#cortex.dataset.Dataset.prepend">[docs]</a>    <span class="k">def</span> <span class="nf">prepend</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">prefix</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Adds the given `prefix` to the name of every data object and returns</span>
+
+<div class="viewcode-block" id="Dataset.prepend">
+<a class="viewcode-back" href="../../../generated/Dataset/cortex.dataset.Dataset.prepend.html#cortex.dataset.Dataset.prepend">[docs]</a>
+    <span class="k">def</span> <span class="nf">prepend</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">prefix</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Adds the given `prefix` to the name of every data object and returns</span>
 <span class="sd">        a new Dataset.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">ds</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
         <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="bp">self</span><span class="p">:</span>
             <span class="n">ds</span><span class="p">[</span><span class="n">prefix</span><span class="o">+</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
 
-        <span class="k">return</span> <span class="n">Dataset</span><span class="p">(</span><span class="o">**</span><span class="n">ds</span><span class="p">)</span></div></div>
+        <span class="k">return</span> <span class="n">Dataset</span><span class="p">(</span><span class="o">**</span><span class="n">ds</span><span class="p">)</span></div>
+</div>
+
 
 <span class="k">def</span> <span class="nf">normalize</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
     <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="p">(</span><span class="n">Dataset</span><span class="p">,</span> <span class="n">Dataview</span><span class="p">)):</span>
@@ -320,7 +372,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -328,8 +380,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -343,11 +395,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/dataset/view2D.html b/_modules/cortex/dataset/view2D.html
index 27f7cc4b0..a143d2696 100644
--- a/_modules/cortex/dataset/view2D.html
+++ b/_modules/cortex/dataset/view2D.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.dataset.view2D &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
-    <script src="../../../_static/jquery.js"></script>
-    <script src="../../../_static/underscore.js"></script>
-    <script src="../../../_static/doctools.js"></script>
+    <title>cortex.dataset.view2D &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
    
   <link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -37,6 +36,8 @@
   <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
 <span></span><span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">json</span>
+<span class="kn">import</span> <span class="nn">warnings</span>
+
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
 <span class="kn">from</span> <span class="nn">..</span> <span class="kn">import</span> <span class="n">options</span>
@@ -46,7 +47,7 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
 <span class="n">default_cmap2D</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;basic&quot;</span><span class="p">,</span> <span class="s2">&quot;default_cmap2D&quot;</span><span class="p">)</span>
 
 <span class="k">class</span> <span class="nc">Dataview2D</span><span class="p">(</span><span class="n">Dataview</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Abstract base class for 2-dimensional data views.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Abstract base class for 2-dimensional data views.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin2</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax2</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">cmap</span> <span class="o">=</span> <span class="n">cmap</span> <span class="ow">or</span> <span class="n">default_cmap2D</span>
@@ -99,6 +100,7 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
         <span class="kn">from</span> <span class="nn">matplotlib.colors</span> <span class="kn">import</span> <span class="n">Normalize</span>
         <span class="n">cmapdir</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;webgl&quot;</span><span class="p">,</span> <span class="s2">&quot;colormaps&quot;</span><span class="p">)</span>
         <span class="n">cmap</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmapdir</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">%s</span><span class="s2">.png&quot;</span><span class="o">%</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">))</span>
+        <span class="n">_warn_non_perceptually_uniform_colormap</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">)</span>
 
         <span class="n">norm1</span> <span class="o">=</span> <span class="n">Normalize</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">vmin</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">vmax</span><span class="p">)</span>
         <span class="n">norm2</span> <span class="o">=</span> <span class="n">Normalize</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">vmin2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">vmax2</span><span class="p">)</span>
@@ -136,8 +138,10 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
     <span class="k">def</span> <span class="nf">subject</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">dim1</span><span class="o">.</span><span class="n">subject</span>
 
-<div class="viewcode-block" id="Volume2D"><a class="viewcode-back" href="../../../generated/cortex.dataset.Volume2D.html#cortex.dataset.Volume2D">[docs]</a><span class="k">class</span> <span class="nc">Volume2D</span><span class="p">(</span><span class="n">Dataview2D</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="Volume2D">
+<a class="viewcode-back" href="../../../generated/cortex.dataset.Volume2D.html#cortex.dataset.Volume2D">[docs]</a>
+<span class="k">class</span> <span class="nc">Volume2D</span><span class="p">(</span><span class="n">Dataview2D</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Contains two 3D volumes for simultaneous visualization. Includes information</span>
 <span class="sd">    on how the volumes should be jointly colormapped.</span>
 
@@ -174,7 +178,9 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="n">_cls</span> <span class="o">=</span> <span class="n">VolumeData</span>
 
-<div class="viewcode-block" id="Volume2D.__init__"><a class="viewcode-back" href="../../../generated/Volume2D/cortex.dataset.Volume2D.__init__.html#cortex.dataset.Volume2D.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dim1</span><span class="p">,</span> <span class="n">dim2</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<div class="viewcode-block" id="Volume2D.__init__">
+<a class="viewcode-back" href="../../../generated/Volume2D/cortex.dataset.Volume2D.__init__.html#cortex.dataset.Volume2D.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dim1</span><span class="p">,</span> <span class="n">dim2</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                  <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin2</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax2</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dim1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cls</span><span class="p">):</span>
             <span class="k">if</span> <span class="n">subject</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">xfmname</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
@@ -195,6 +201,7 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
         <span class="nb">super</span><span class="p">(</span><span class="n">Volume2D</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="n">cmap</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">,</span>
                                        <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">,</span> <span class="n">vmin2</span><span class="o">=</span><span class="n">vmin2</span><span class="p">,</span> <span class="n">vmax2</span><span class="o">=</span><span class="n">vmax2</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span></div>
 
+
     <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="s2">&quot;&lt;2D volumetric data for (</span><span class="si">%s</span><span class="s2">, </span><span class="si">%s</span><span class="s2">)&gt;&quot;</span><span class="o">%</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dim1</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dim1</span><span class="o">.</span><span class="n">xfmname</span><span class="p">)</span>
 
@@ -205,7 +212,7 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">raw</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;VolumeRGB object containing the colormapped data from this object.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;VolumeRGB object containing the colormapped data from this object.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">dim1</span><span class="o">.</span><span class="n">xfmname</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dim2</span><span class="o">.</span><span class="n">xfmname</span><span class="p">:</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Both Volumes must have same xfmname to generate single raw volume&quot;</span><span class="p">)</span>
@@ -228,8 +235,11 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
     <span class="k">def</span> <span class="nf">xfmname</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">dim1</span><span class="o">.</span><span class="n">xfmname</span></div>
 
-<div class="viewcode-block" id="Vertex2D"><a class="viewcode-back" href="../../../generated/cortex.dataset.Vertex2D.html#cortex.dataset.Vertex2D">[docs]</a><span class="k">class</span> <span class="nc">Vertex2D</span><span class="p">(</span><span class="n">Dataview2D</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="Vertex2D">
+<a class="viewcode-back" href="../../../generated/cortex.dataset.Vertex2D.html#cortex.dataset.Vertex2D">[docs]</a>
+<span class="k">class</span> <span class="nc">Vertex2D</span><span class="p">(</span><span class="n">Dataview2D</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Contains two vertex maps for simultaneous visualization. Includes information</span>
 <span class="sd">    on how the maps should be jointly colormapped.</span>
 
@@ -264,7 +274,9 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
     <span class="n">_cls</span> <span class="o">=</span> <span class="n">VertexData</span>
     <span class="n">blend_curvature</span> <span class="o">=</span> <span class="n">_cls</span><span class="o">.</span><span class="n">blend_curvature</span>  <span class="c1"># hacky inheritance</span>
 
-<div class="viewcode-block" id="Vertex2D.__init__"><a class="viewcode-back" href="../../../generated/Vertex2D/cortex.dataset.Vertex2D.__init__.html#cortex.dataset.Vertex2D.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dim1</span><span class="p">,</span> <span class="n">dim2</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<div class="viewcode-block" id="Vertex2D.__init__">
+<a class="viewcode-back" href="../../../generated/Vertex2D/cortex.dataset.Vertex2D.__init__.html#cortex.dataset.Vertex2D.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dim1</span><span class="p">,</span> <span class="n">dim2</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                  <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin2</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax2</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dim1</span><span class="p">,</span> <span class="n">VertexData</span><span class="p">):</span>
             <span class="k">if</span> <span class="n">subject</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
@@ -286,12 +298,13 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
                                        <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">,</span> <span class="n">vmin2</span><span class="o">=</span><span class="n">vmin2</span><span class="p">,</span>
                                        <span class="n">vmax2</span><span class="o">=</span><span class="n">vmax2</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span></div>
 
+
     <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="s2">&quot;&lt;2D vertex data for (</span><span class="si">%s</span><span class="s2">)&gt;&quot;</span><span class="o">%</span><span class="bp">self</span><span class="o">.</span><span class="n">dim1</span><span class="o">.</span><span class="n">subject</span>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">raw</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;VertexRGB object containing the colormapped data from this object.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;VertexRGB object containing the colormapped data from this object.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">r</span><span class="p">,</span> <span class="n">g</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">a</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_to_raw</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dim1</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dim2</span><span class="o">.</span><span class="n">data</span><span class="p">)</span>
         <span class="c1"># Allow manual override of alpha channel</span>
@@ -303,6 +316,21 @@ <h1>Source code for cortex.dataset.view2D</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">vertices</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">raw</span><span class="o">.</span><span class="n">vertices</span></div>
+
+
+
+<span class="k">def</span> <span class="nf">_warn_non_perceptually_uniform_colormap</span><span class="p">(</span><span class="n">cmap</span><span class="p">):</span>
+    <span class="n">mapping</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;BuOr_2D&quot;</span><span class="p">:</span> <span class="s2">&quot;PU_BuOr_covar&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;RdBu_covar&quot;</span><span class="p">:</span> <span class="s2">&quot;PU_RdBu_covar&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;RdBu_covar2&quot;</span><span class="p">:</span> <span class="s2">&quot;PU_BuOr_covar&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;RdBu_covar_alpha&quot;</span><span class="p">:</span> <span class="s2">&quot;PU_RdBu_covar_alpha&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;RdGn_covar&quot;</span><span class="p">:</span> <span class="s2">&quot;PU_RdGn_covar&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;hot_alpha&quot;</span><span class="p">:</span> <span class="s2">&quot;fire_alpha&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+    <span class="k">if</span> <span class="n">cmap</span> <span class="ow">in</span> <span class="n">mapping</span><span class="p">:</span>
+        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Colormap </span><span class="si">%r</span><span class="s2"> is not perceptually uniform. Consider using&quot;</span>
+                      <span class="s2">&quot; </span><span class="si">%r</span><span class="s2"> instead.&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">cmap</span><span class="p">,</span> <span class="n">mapping</span><span class="p">[</span><span class="n">cmap</span><span class="p">]),</span> <span class="ne">UserWarning</span><span class="p">)</span>
 </pre></div>
 
           </div>
@@ -353,7 +381,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -361,8 +389,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -376,11 +404,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/dataset/viewRGB.html b/_modules/cortex/dataset/viewRGB.html
index 827837f7f..a19a68ff5 100644
--- a/_modules/cortex/dataset/viewRGB.html
+++ b/_modules/cortex/dataset/viewRGB.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.dataset.viewRGB &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
-    <script src="../../../_static/jquery.js"></script>
-    <script src="../../../_static/underscore.js"></script>
-    <script src="../../../_static/doctools.js"></script>
+    <title>cortex.dataset.viewRGB &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
    
   <link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -37,6 +36,7 @@
   <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 <span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">colorsys</span>
+<span class="kn">import</span> <span class="nn">warnings</span>
 
 <span class="kn">from</span> <span class="nn">.views</span> <span class="kn">import</span> <span class="n">Dataview</span><span class="p">,</span> <span class="n">Volume</span><span class="p">,</span> <span class="n">Vertex</span>
 <span class="kn">from</span> <span class="nn">.braindata</span> <span class="kn">import</span> <span class="n">VolumeData</span><span class="p">,</span> <span class="n">VertexData</span><span class="p">,</span> <span class="n">_hash</span>
@@ -47,7 +47,7 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 
 
 <span class="k">class</span> <span class="nc">Colors</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Set of known colors</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="n">RoseRed</span> <span class="o">=</span> <span class="p">(</span><span class="mi">237</span><span class="p">,</span> <span class="mi">35</span><span class="p">,</span> <span class="mi">96</span><span class="p">)</span>
@@ -60,7 +60,7 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">RGB2HSV</span><span class="p">(</span><span class="n">color</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Converts RGB to HS</span>
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -79,7 +79,7 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">HSV2RGB</span><span class="p">(</span><span class="n">color</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Converts HSV to RGB</span>
 
 <span class="sd">    Parameters</span>
@@ -97,7 +97,7 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 
 
 <span class="k">class</span> <span class="nc">DataviewRGB</span><span class="p">(</span><span class="n">Dataview</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Abstract base class for RGB data views.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Abstract base class for RGB data views.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="n">alpha</span>
@@ -155,8 +155,14 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
             <span class="n">sdict</span><span class="p">[</span><span class="s1">&#39;vmax&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="mi">255</span><span class="p">]</span>
         <span class="k">return</span> <span class="n">sdict</span>
 
-<div class="viewcode-block" id="VolumeRGB"><a class="viewcode-back" href="../../../generated/cortex.dataset.VolumeRGB.html#cortex.dataset.VolumeRGB">[docs]</a><span class="k">class</span> <span class="nc">VolumeRGB</span><span class="p">(</span><span class="n">DataviewRGB</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+    <span class="k">def</span> <span class="nf">get_cmapdict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+        <span class="k">return</span> <span class="nb">dict</span><span class="p">()</span>
+
+
+<div class="viewcode-block" id="VolumeRGB">
+<a class="viewcode-back" href="../../../generated/cortex.dataset.VolumeRGB.html#cortex.dataset.VolumeRGB">[docs]</a>
+<span class="k">class</span> <span class="nc">VolumeRGB</span><span class="p">(</span><span class="n">DataviewRGB</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Contains RGB (or RGBA) colors for each voxel in a volumetric dataset.</span>
 <span class="sd">    Includes information about the subject and transform for the data.</span>
 
@@ -211,7 +217,7 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 <span class="sd">        Use the same vmin and vmax for all three color channels?</span>
 <span class="sd">    shared_vmin : float, optional</span>
 <span class="sd">        Predetermined shared vmin. Does nothing if shared_range == False. If not given,</span>
-<span class="sd">        will be the 1st percentil of all values across all three channels.</span>
+<span class="sd">        will be the 1st percentile of all values across all three channels.</span>
 <span class="sd">    shared_vmax : float, optional</span>
 <span class="sd">        Predetermined shared vmax. Does nothing if shared_range == False. If not given,</span>
 <span class="sd">        will be the 99th percentile of all values across all three channels</span>
@@ -222,7 +228,9 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="n">_cls</span> <span class="o">=</span> <span class="n">VolumeData</span>
 
-<div class="viewcode-block" id="VolumeRGB.__init__"><a class="viewcode-back" href="../../../generated/VolumeRGB/cortex.dataset.VolumeRGB.__init__.html#cortex.dataset.VolumeRGB.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">channel1</span><span class="p">,</span> <span class="n">channel2</span><span class="p">,</span> <span class="n">channel3</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span>
+<div class="viewcode-block" id="VolumeRGB.__init__">
+<a class="viewcode-back" href="../../../generated/VolumeRGB/cortex.dataset.VolumeRGB.__init__.html#cortex.dataset.VolumeRGB.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">channel1</span><span class="p">,</span> <span class="n">channel2</span><span class="p">,</span> <span class="n">channel3</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span>
                  <span class="n">state</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">channel1color</span><span class="o">=</span><span class="n">Colors</span><span class="o">.</span><span class="n">Red</span><span class="p">,</span> <span class="n">channel2color</span><span class="o">=</span><span class="n">Colors</span><span class="o">.</span><span class="n">Green</span><span class="p">,</span> <span class="n">channel3color</span><span class="o">=</span><span class="n">Colors</span><span class="o">.</span><span class="n">Blue</span><span class="p">,</span>
                  <span class="n">max_color_value</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">max_color_saturation</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">shared_range</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">shared_vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                  <span class="n">shared_vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
@@ -244,13 +252,18 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
                 <span class="bp">self</span><span class="o">.</span><span class="n">red</span> <span class="o">=</span> <span class="n">channel1</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">green</span> <span class="o">=</span> <span class="n">channel2</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">blue</span> <span class="o">=</span> <span class="n">channel3</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="n">alpha</span>
             <span class="k">else</span><span class="p">:</span>  <span class="c1"># need to remap colors</span>
-                <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span> <span class="o">=</span> <span class="n">VolumeRGB</span><span class="o">.</span><span class="n">color_voxels</span><span class="p">(</span><span class="n">channel1</span><span class="p">,</span> <span class="n">channel2</span><span class="p">,</span> <span class="n">channel3</span><span class="p">,</span> <span class="n">channel1color</span><span class="p">,</span> <span class="n">channel2color</span><span class="p">,</span>
-                                                          <span class="n">channel3color</span><span class="p">,</span> <span class="n">max_color_value</span><span class="p">,</span> <span class="n">max_color_saturation</span><span class="p">,</span>
-                                                          <span class="n">shared_range</span><span class="p">,</span> <span class="n">shared_vmin</span><span class="p">,</span> <span class="n">shared_vmax</span><span class="p">)</span>
+                <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">alpha</span> <span class="o">=</span> <span class="n">VolumeRGB</span><span class="o">.</span><span class="n">color_voxels</span><span class="p">(</span>
+                    <span class="n">channel1</span><span class="p">,</span> <span class="n">channel2</span><span class="p">,</span> <span class="n">channel3</span><span class="p">,</span>
+                    <span class="n">channel1color</span><span class="p">,</span> <span class="n">channel2color</span><span class="p">,</span> <span class="n">channel3color</span><span class="p">,</span>
+                    <span class="n">max_color_value</span><span class="p">,</span> <span class="n">max_color_saturation</span><span class="p">,</span>
+                    <span class="n">shared_range</span><span class="p">,</span> <span class="n">shared_vmin</span><span class="p">,</span> <span class="n">shared_vmax</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="n">alpha</span>
+                <span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">red</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">channel1</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="n">channel1</span><span class="o">.</span><span class="n">xfmname</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">green</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">green</span><span class="p">,</span> <span class="n">channel1</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="n">channel1</span><span class="o">.</span><span class="n">xfmname</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">blue</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">blue</span><span class="p">,</span> <span class="n">channel1</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="n">channel1</span><span class="o">.</span><span class="n">xfmname</span><span class="p">)</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="n">alpha</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="k">if</span> <span class="n">subject</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">xfmname</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
                 <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Subject and xfmname are required&quot;</span><span class="p">)</span>
@@ -260,24 +273,18 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
                 <span class="bp">self</span><span class="o">.</span><span class="n">red</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">channel1</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">green</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">channel2</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">blue</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">channel3</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>	<span class="c1"># need to remap colors</span>
-                <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span> <span class="o">=</span> <span class="n">VolumeRGB</span><span class="o">.</span><span class="n">color_voxels</span><span class="p">(</span><span class="n">channel1</span><span class="p">,</span> <span class="n">channel2</span><span class="p">,</span> <span class="n">channel3</span><span class="p">,</span> <span class="n">channel1color</span><span class="p">,</span> <span class="n">channel2color</span><span class="p">,</span>
-                                                          <span class="n">channel3color</span><span class="p">,</span> <span class="n">max_color_value</span><span class="p">,</span> <span class="n">max_color_saturation</span><span class="p">,</span>
-                                                          <span class="n">shared_range</span><span class="p">,</span> <span class="n">shared_vmin</span><span class="p">,</span> <span class="n">shared_vmax</span><span class="p">)</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="n">alpha</span>
+            <span class="k">else</span><span class="p">:</span>  <span class="c1"># need to remap colors</span>
+                <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">alpha</span> <span class="o">=</span> <span class="n">VolumeRGB</span><span class="o">.</span><span class="n">color_voxels</span><span class="p">(</span>
+                    <span class="n">channel1</span><span class="p">,</span> <span class="n">channel2</span><span class="p">,</span> <span class="n">channel3</span><span class="p">,</span>
+                    <span class="n">channel1color</span><span class="p">,</span> <span class="n">channel2color</span><span class="p">,</span> <span class="n">channel3color</span><span class="p">,</span>
+                    <span class="n">max_color_value</span><span class="p">,</span> <span class="n">max_color_saturation</span><span class="p">,</span>
+                    <span class="n">shared_range</span><span class="p">,</span> <span class="n">shared_vmin</span><span class="p">,</span> <span class="n">shared_vmax</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="n">alpha</span>
+                <span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">red</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">green</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">green</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
                 <span class="bp">self</span><span class="o">.</span><span class="n">blue</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">blue</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
-
-
-        <span class="k">if</span> <span class="n">alpha</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">volume</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">xfmname</span><span class="p">,</span>
-                           <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="n">Volume</span><span class="p">):</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">xfmname</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="n">alpha</span>
+                <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="n">alpha</span>
 
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">xfmname</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">green</span><span class="o">.</span><span class="n">xfmname</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">blue</span><span class="o">.</span><span class="n">xfmname</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span><span class="o">.</span><span class="n">xfmname</span><span class="p">:</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">xfmname</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">xfmname</span>
@@ -286,7 +293,36 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 
         <span class="nb">super</span><span class="p">(</span><span class="n">VolumeRGB</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="VolumeRGB.to_json"><a class="viewcode-back" href="../../../generated/VolumeRGB/cortex.dataset.VolumeRGB.to_json.html#cortex.dataset.VolumeRGB.to_json">[docs]</a>    <span class="k">def</span> <span class="nf">to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">simple</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+
+    <span class="nd">@property</span>
+    <span class="k">def</span> <span class="nf">alpha</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Compute alpha transparency&quot;&quot;&quot;</span>
+        <span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_alpha</span>
+        <span class="k">if</span> <span class="n">alpha</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">volume</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">xfmname</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="n">Volume</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">alpha</span><span class="o">.</span><span class="n">dtype</span> <span class="o">!=</span> <span class="n">np</span><span class="o">.</span><span class="n">uint8</span> <span class="ow">and</span> <span class="p">(</span><span class="n">alpha</span><span class="o">.</span><span class="n">min</span><span class="p">()</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">alpha</span><span class="o">.</span><span class="n">max</span><span class="p">()</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">):</span>
+                <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+                    <span class="s2">&quot;Some alpha values are outside the range of [0, 1]. &quot;</span>
+                    <span class="s2">&quot;Consider passing a Volume object as alpha with explicit vmin, vmax &quot;</span>
+                    <span class="s2">&quot;keyword arguments.&quot;</span><span class="p">,</span>
+                    <span class="ne">Warning</span>
+                <span class="p">)</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="n">Volume</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">xfmname</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+
+        <span class="n">rgb</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">volume</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">green</span><span class="o">.</span><span class="n">volume</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">blue</span><span class="o">.</span><span class="n">volume</span><span class="p">])</span>
+        <span class="n">mask</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">rgb</span><span class="p">)</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+        <span class="n">alpha</span><span class="o">.</span><span class="n">volume</span><span class="p">[</span><span class="n">mask</span><span class="p">]</span> <span class="o">=</span> <span class="n">alpha</span><span class="o">.</span><span class="n">vmin</span>
+        <span class="k">return</span> <span class="n">alpha</span>
+
+    <span class="nd">@alpha</span><span class="o">.</span><span class="n">setter</span>
+    <span class="k">def</span> <span class="nf">alpha</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_alpha</span> <span class="o">=</span> <span class="n">alpha</span>
+
+<div class="viewcode-block" id="VolumeRGB.to_json">
+<a class="viewcode-back" href="../../../generated/VolumeRGB/cortex.dataset.VolumeRGB.to_json.html#cortex.dataset.VolumeRGB.to_json">[docs]</a>
+    <span class="k">def</span> <span class="nf">to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">simple</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="n">sdict</span> <span class="o">=</span> <span class="nb">super</span><span class="p">(</span><span class="n">VolumeRGB</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">to_json</span><span class="p">(</span><span class="n">simple</span><span class="o">=</span><span class="n">simple</span><span class="p">)</span>
         <span class="k">if</span> <span class="n">simple</span><span class="p">:</span>
             <span class="n">sdict</span><span class="p">[</span><span class="s1">&#39;shape&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">shape</span>
@@ -295,9 +331,10 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">sdict</span></div>
 
+
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">volume</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;5-dimensional volume (t, z, y, x, rgba) with data that has been mapped</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;5-dimensional volume (t, z, y, x, rgba) with data that has been mapped</span>
 <span class="sd">        into 8-bit unsigned integers that correspond to colors.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>
@@ -340,11 +377,13 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
     <span class="k">def</span> <span class="nf">raw</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span>
 
-<div class="viewcode-block" id="VolumeRGB.color_voxels"><a class="viewcode-back" href="../../../generated/VolumeRGB/cortex.dataset.VolumeRGB.color_voxels.html#cortex.dataset.VolumeRGB.color_voxels">[docs]</a>    <span class="nd">@staticmethod</span>
+<div class="viewcode-block" id="VolumeRGB.color_voxels">
+<a class="viewcode-back" href="../../../generated/VolumeRGB/cortex.dataset.VolumeRGB.color_voxels.html#cortex.dataset.VolumeRGB.color_voxels">[docs]</a>
+    <span class="nd">@staticmethod</span>
     <span class="k">def</span> <span class="nf">color_voxels</span><span class="p">(</span><span class="n">channel1</span><span class="p">,</span> <span class="n">channel2</span><span class="p">,</span> <span class="n">channel3</span><span class="p">,</span> <span class="n">channel1color</span><span class="p">,</span> <span class="n">channel2color</span><span class="p">,</span>
                      <span class="n">channel3Color</span><span class="p">,</span> <span class="n">value_max</span><span class="p">,</span> <span class="n">saturation_max</span><span class="p">,</span> <span class="n">common_range</span><span class="p">,</span>
-                     <span class="n">common_min</span><span class="p">,</span> <span class="n">common_max</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;</span>
+                     <span class="n">common_min</span><span class="p">,</span> <span class="n">common_max</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Colors voxels in 3 color dimensions but not necessarily canonical red, green, and blue</span>
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -373,25 +412,41 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 <span class="sd">        common_max : float, optional</span>
 <span class="sd">            Predetermined shared vmax. Does nothing if shared_range == False. If not given,</span>
 <span class="sd">            will be the 99th percentile of all values across all three channels</span>
+<span class="sd">        alpha : ndarray or Volume, optional</span>
+<span class="sd">            Alpha values for each voxel. If None, alpha is set to 1 for all voxels. </span>
 
 <span class="sd">        Returns</span>
 <span class="sd">        -------</span>
 <span class="sd">        red : ndarray of channel1.shape</span>
 <span class="sd">            uint8 array of red values</span>
-<span class="sd">        green : ndarray of data2.shape</span>
+<span class="sd">        green : ndarray of channel1.shape</span>
 <span class="sd">            uint8 array of green values</span>
-<span class="sd">        blue : ndarray of data3.shape</span>
+<span class="sd">        blue : ndarray of channel1.shape</span>
 <span class="sd">            uint8 array of blue values</span>
-
+<span class="sd">        alpha : ndarray</span>
+<span class="sd">            If alpha=None, uint8 array of alpha values with alpha=1 for every voxel. </span>
+<span class="sd">            Otherwise, the same alpha values that were passed in. Additionally, </span>
+<span class="sd">            voxels with NaNs will have an alpha value of 0.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># normalize each channel to [0, 1]</span>
-        <span class="n">data1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="n">channel1</span><span class="o">.</span><span class="n">data</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">channel1</span><span class="p">,</span> <span class="n">VolumeData</span><span class="p">)</span> <span class="k">else</span> <span class="n">channel1</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">)</span>
-        <span class="n">data2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="n">channel2</span><span class="o">.</span><span class="n">data</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">channel2</span><span class="p">,</span> <span class="n">VolumeData</span><span class="p">)</span> <span class="k">else</span> <span class="n">channel2</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">)</span>
-        <span class="n">data3</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="n">channel3</span><span class="o">.</span><span class="n">data</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">channel3</span><span class="p">,</span> <span class="n">VolumeData</span><span class="p">)</span> <span class="k">else</span> <span class="n">channel3</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">)</span>
+        <span class="n">data1</span> <span class="o">=</span> <span class="n">channel1</span><span class="o">.</span><span class="n">data</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">channel1</span><span class="p">,</span> <span class="n">VolumeData</span><span class="p">)</span> <span class="k">else</span> <span class="n">channel1</span>
+        <span class="n">data1</span> <span class="o">=</span> <span class="n">data1</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span>
+        <span class="n">data2</span> <span class="o">=</span> <span class="n">channel2</span><span class="o">.</span><span class="n">data</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">channel2</span><span class="p">,</span> <span class="n">VolumeData</span><span class="p">)</span> <span class="k">else</span> <span class="n">channel2</span>
+        <span class="n">data2</span> <span class="o">=</span> <span class="n">data2</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span>
+        <span class="n">data3</span> <span class="o">=</span> <span class="n">channel3</span><span class="o">.</span><span class="n">data</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">channel3</span><span class="p">,</span> <span class="n">VolumeData</span><span class="p">)</span> <span class="k">else</span> <span class="n">channel3</span>
+        <span class="n">data3</span> <span class="o">=</span> <span class="n">data3</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span>
 
         <span class="k">if</span> <span class="p">(</span><span class="n">data1</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">data2</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">data2</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">data3</span><span class="o">.</span><span class="n">shape</span><span class="p">):</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Volumes are of different shapes&#39;</span><span class="p">)</span>
 
+        <span class="c1"># Create an alpha mask now, before casting nans to 0</span>
+        <span class="c1"># Voxels with at least one channel equal to NaN will be masked out.</span>
+        <span class="n">mask</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">data1</span><span class="p">,</span> <span class="n">data2</span><span class="p">,</span> <span class="n">data3</span><span class="p">]))</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+        <span class="c1"># Now convert to NaNs to num for all channels</span>
+        <span class="n">data1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="n">data1</span><span class="p">)</span>
+        <span class="n">data2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="n">data2</span><span class="p">)</span>
+        <span class="n">data3</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="n">data3</span><span class="p">)</span>
+
         <span class="k">if</span> <span class="n">common_range</span><span class="p">:</span>
             <span class="k">if</span> <span class="n">common_min</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
                 <span class="k">if</span> <span class="n">common_max</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
@@ -452,11 +507,20 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
             <span class="n">green</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">this_color</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
             <span class="n">blue</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">this_color</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
 
-        <span class="k">return</span> <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span></div></div>
+        <span class="c1"># Now make an alpha volume</span>
+        <span class="k">if</span> <span class="n">alpha</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ones_like</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">uint8</span><span class="p">)</span> <span class="o">*</span> <span class="mi">255</span>
+        <span class="n">alpha</span><span class="p">[</span><span class="n">mask</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+
+        <span class="k">return</span> <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">alpha</span></div>
+</div>
+
 
 
-<div class="viewcode-block" id="VertexRGB"><a class="viewcode-back" href="../../../generated/cortex.dataset.VertexRGB.html#cortex.dataset.VertexRGB">[docs]</a><span class="k">class</span> <span class="nc">VertexRGB</span><span class="p">(</span><span class="n">DataviewRGB</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="VertexRGB">
+<a class="viewcode-back" href="../../../generated/cortex.dataset.VertexRGB.html#cortex.dataset.VertexRGB">[docs]</a>
+<span class="k">class</span> <span class="nc">VertexRGB</span><span class="p">(</span><span class="n">DataviewRGB</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Contains RGB (or RGBA) colors for each vertex in a surface dataset.</span>
 <span class="sd">    Includes information about the subject.</span>
 
@@ -495,7 +559,9 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
     <span class="n">_cls</span> <span class="o">=</span> <span class="n">VertexData</span>
     <span class="n">blend_curvature</span> <span class="o">=</span> <span class="n">_cls</span><span class="o">.</span><span class="n">blend_curvature</span>  <span class="c1"># hacky inheritance</span>
 
-<div class="viewcode-block" id="VertexRGB.__init__"><a class="viewcode-back" href="../../../generated/VertexRGB/cortex.dataset.VertexRGB.__init__.html#cortex.dataset.VertexRGB.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span>
+<div class="viewcode-block" id="VertexRGB.__init__">
+<a class="viewcode-back" href="../../../generated/VertexRGB/cortex.dataset.VertexRGB.__init__.html#cortex.dataset.VertexRGB.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span>
                  <span class="n">state</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
 
         <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">VertexData</span><span class="p">):</span>
@@ -513,19 +579,41 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
             <span class="bp">self</span><span class="o">.</span><span class="n">green</span> <span class="o">=</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">green</span><span class="p">,</span> <span class="n">subject</span><span class="p">)</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">blue</span> <span class="o">=</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">blue</span><span class="p">,</span> <span class="n">subject</span><span class="p">)</span>
 
-        <span class="k">if</span> <span class="n">alpha</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">vertices</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="n">Vertex</span><span class="p">):</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">subject</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">alpha</span> <span class="o">=</span> <span class="n">alpha</span>
 
         <span class="nb">super</span><span class="p">(</span><span class="n">VertexRGB</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">alpha</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">,</span>
                                         <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span></div>
 
+
+    <span class="nd">@property</span>
+    <span class="k">def</span> <span class="nf">alpha</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Compute alpha transparency&quot;&quot;&quot;</span>
+        <span class="n">alpha</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_alpha</span>
+        <span class="k">if</span> <span class="n">alpha</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">vertices</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="n">Vertex</span><span class="p">):</span>
+            <span class="k">if</span> <span class="n">alpha</span><span class="o">.</span><span class="n">dtype</span> <span class="o">!=</span> <span class="n">np</span><span class="o">.</span><span class="n">uint8</span> <span class="ow">and</span> <span class="p">(</span><span class="n">alpha</span><span class="o">.</span><span class="n">min</span><span class="p">()</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">alpha</span><span class="o">.</span><span class="n">max</span><span class="p">()</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">):</span>
+                <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span>
+                    <span class="s2">&quot;Some alpha values are outside the range of [0, 1]. &quot;</span>
+                    <span class="s2">&quot;Consider passing a Vertex object as alpha with explicit vmin, vmax &quot;</span>
+                    <span class="s2">&quot;keyword arguments.&quot;</span><span class="p">,</span>
+                    <span class="ne">Warning</span>
+                <span class="p">)</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">alpha</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+
+        <span class="n">rgb</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">green</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">blue</span><span class="o">.</span><span class="n">data</span><span class="p">])</span>
+        <span class="n">mask</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">rgb</span><span class="p">)</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+        <span class="n">alpha</span><span class="o">.</span><span class="n">data</span><span class="p">[</span><span class="n">mask</span><span class="p">]</span> <span class="o">=</span> <span class="n">alpha</span><span class="o">.</span><span class="n">vmin</span>
+        <span class="k">return</span> <span class="n">alpha</span>
+
+    <span class="nd">@alpha</span><span class="o">.</span><span class="n">setter</span>
+    <span class="k">def</span> <span class="nf">alpha</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">alpha</span><span class="p">):</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">_alpha</span> <span class="o">=</span> <span class="n">alpha</span>
+
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">vertices</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;3-dimensional volume (t, v, rgba) with data that has been mapped</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;3-dimensional volume (t, v, rgba) with data that has been mapped</span>
 <span class="sd">        into 8-bit unsigned integers that correspond to colors.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">verts</span> <span class="o">=</span> <span class="p">[]</span>
@@ -550,7 +638,9 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
             <span class="n">verts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">vert</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">verts</span><span class="p">)</span><span class="o">.</span><span class="n">transpose</span><span class="p">([</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">])</span>
 
-<div class="viewcode-block" id="VertexRGB.to_json"><a class="viewcode-back" href="../../../generated/VertexRGB/cortex.dataset.VertexRGB.to_json.html#cortex.dataset.VertexRGB.to_json">[docs]</a>    <span class="k">def</span> <span class="nf">to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">simple</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<div class="viewcode-block" id="VertexRGB.to_json">
+<a class="viewcode-back" href="../../../generated/VertexRGB/cortex.dataset.VertexRGB.to_json.html#cortex.dataset.VertexRGB.to_json">[docs]</a>
+    <span class="k">def</span> <span class="nf">to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">simple</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="n">sdict</span> <span class="o">=</span> <span class="nb">super</span><span class="p">(</span><span class="n">VertexRGB</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">to_json</span><span class="p">(</span><span class="n">simple</span><span class="o">=</span><span class="n">simple</span><span class="p">)</span>
 
         <span class="k">if</span> <span class="n">simple</span><span class="p">:</span>
@@ -558,6 +648,7 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">sdict</span></div>
 
+
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">left</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">vertices</span><span class="p">[:,:</span><span class="bp">self</span><span class="o">.</span><span class="n">red</span><span class="o">.</span><span class="n">llen</span><span class="p">]</span>
@@ -579,6 +670,7 @@ <h1>Source code for cortex.dataset.viewRGB</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">raw</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span></div>
+
 </pre></div>
 
           </div>
@@ -629,7 +721,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -637,8 +729,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -652,11 +744,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/dataset/views.html b/_modules/cortex/dataset/views.html
index fab6703f5..c66f1f85e 100644
--- a/_modules/cortex/dataset/views.html
+++ b/_modules/cortex/dataset/views.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.dataset.views &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
-    <script src="../../../_static/jquery.js"></script>
-    <script src="../../../_static/underscore.js"></script>
-    <script src="../../../_static/doctools.js"></script>
+    <title>cortex.dataset.views &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
    
   <link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -35,10 +34,11 @@
           <div class="body" role="main">
             
   <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
-<span></span><span class="kn">import</span> <span class="nn">json</span>
+<span></span><span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">import</span> <span class="nn">glob</span>
+<span class="kn">import</span> <span class="nn">json</span>
 <span class="kn">import</span> <span class="nn">h5py</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">six</span> <span class="kn">import</span> <span class="n">string_types</span>
 
 <span class="kn">from</span> <span class="nn">..</span> <span class="kn">import</span> <span class="n">options</span>
 <span class="kn">from</span> <span class="nn">.braindata</span> <span class="kn">import</span> <span class="n">BrainData</span><span class="p">,</span> <span class="n">VolumeData</span><span class="p">,</span> <span class="n">VertexData</span>
@@ -61,22 +61,24 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
     <span class="k">else</span><span class="p">:</span>
         <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Invalid input for Dataview&quot;</span><span class="p">)</span>
 
-<span class="k">def</span> <span class="nf">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Decodes a __hash named node from an HDF file into the </span>
+<span class="k">def</span> <span class="nf">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Decodes a __hash named node from an HDF file into the </span>
 <span class="sd">    constituent Vertex or Volume object&quot;&quot;&quot;</span>
     <span class="n">dnode</span> <span class="o">=</span> <span class="n">h5</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;/data/</span><span class="si">%s</span><span class="s2">&quot;</span><span class="o">%</span><span class="n">name</span><span class="p">)</span>
     <span class="k">if</span> <span class="n">dnode</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">dnode</span> <span class="o">=</span> <span class="n">h5</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
 
     <span class="n">attrs</span> <span class="o">=</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">u</span><span class="p">(</span><span class="n">v</span><span class="p">)</span> <span class="k">for</span> <span class="p">(</span><span class="n">k</span><span class="p">,</span> <span class="n">v</span><span class="p">)</span> <span class="ow">in</span> <span class="n">dnode</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">items</span><span class="p">()}</span>
-    <span class="n">subj</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;subject&#39;</span><span class="p">]</span>
+    <span class="k">if</span> <span class="n">subject</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">subject</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;subject&#39;</span><span class="p">]</span>
     <span class="c1">#support old style xfmname saving as attribute</span>
     <span class="k">if</span> <span class="n">xfmname</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="s1">&#39;xfmname&#39;</span> <span class="ow">in</span> <span class="n">attrs</span><span class="p">:</span>
         <span class="n">xfmname</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;xfmname&#39;</span><span class="p">]</span>
     <span class="n">mask</span> <span class="o">=</span> <span class="kc">None</span>
     <span class="k">if</span> <span class="s1">&#39;mask&#39;</span> <span class="ow">in</span> <span class="n">attrs</span><span class="p">:</span>
         <span class="k">if</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;mask&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;__&quot;</span><span class="p">):</span>
-            <span class="n">mask</span> <span class="o">=</span> <span class="n">h5</span><span class="p">[</span><span class="s1">&#39;/subjects/</span><span class="si">%s</span><span class="s1">/transforms/</span><span class="si">%s</span><span class="s1">/masks/</span><span class="si">%s</span><span class="s1">&#39;</span><span class="o">%</span><span class="p">(</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;subject&#39;</span><span class="p">],</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;mask&#39;</span><span class="p">])]</span><span class="o">.</span><span class="n">value</span>
+            <span class="n">mask</span> <span class="o">=</span> <span class="n">h5</span><span class="p">[</span><span class="s1">&#39;/subjects/</span><span class="si">%s</span><span class="s1">/transforms/</span><span class="si">%s</span><span class="s1">/masks/</span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span>
+                      <span class="p">(</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;subject&#39;</span><span class="p">],</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;mask&#39;</span><span class="p">])]</span><span class="o">.</span><span class="n">value</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="n">mask</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;mask&#39;</span><span class="p">]</span>
 
@@ -87,37 +89,37 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
             <span class="n">alpha</span> <span class="o">=</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span> <span class="mi">3</span><span class="p">]</span>
 
         <span class="k">if</span> <span class="n">xfmname</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">VertexRGB</span><span class="p">(</span><span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">0</span><span class="p">],</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">1</span><span class="p">],</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">2</span><span class="p">],</span> <span class="n">subj</span><span class="p">,</span> 
+            <span class="k">return</span> <span class="n">VertexRGB</span><span class="p">(</span><span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">0</span><span class="p">],</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">1</span><span class="p">],</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">2</span><span class="p">],</span> <span class="n">subject</span><span class="p">,</span> 
                              <span class="n">alpha</span><span class="o">=</span><span class="n">alpha</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
 
-        <span class="k">return</span> <span class="n">VolumeRGB</span><span class="p">(</span><span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">0</span><span class="p">],</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">1</span><span class="p">],</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">2</span><span class="p">],</span> <span class="n">subj</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> 
+        <span class="k">return</span> <span class="n">VolumeRGB</span><span class="p">(</span><span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">0</span><span class="p">],</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">1</span><span class="p">],</span> <span class="n">dnode</span><span class="p">[</span><span class="o">...</span><span class="p">,</span><span class="mi">2</span><span class="p">],</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> 
                          <span class="n">alpha</span><span class="o">=</span><span class="n">alpha</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">mask</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
 
     <span class="k">if</span> <span class="n">xfmname</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">dnode</span><span class="p">,</span> <span class="n">subj</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+        <span class="k">return</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">dnode</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
     
-    <span class="k">return</span> <span class="n">Volume</span><span class="p">(</span><span class="n">dnode</span><span class="p">,</span> <span class="n">subj</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">mask</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+    <span class="k">return</span> <span class="n">Volume</span><span class="p">(</span><span class="n">dnode</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">mask</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
         
 
-<span class="k">def</span> <span class="nf">_from_hdf_view</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>  <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">_from_hdf_view</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>  <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
 
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">string_types</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+        <span class="k">return</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
         
     <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-        <span class="n">dim1</span> <span class="o">=</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="n">dim2</span> <span class="o">=</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+        <span class="n">dim1</span> <span class="o">=</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">)</span>
+        <span class="n">dim2</span> <span class="o">=</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">)</span>
         <span class="bp">cls</span> <span class="o">=</span> <span class="n">Vertex2D</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dim1</span><span class="p">,</span> <span class="n">Vertex</span><span class="p">)</span> <span class="k">else</span> <span class="n">Volume2D</span>
         <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">dim1</span><span class="p">,</span> <span class="n">dim2</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">vmin2</span><span class="o">=</span><span class="n">vmin</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> 
-                   <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">vmax2</span><span class="o">=</span><span class="n">vmax</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+                   <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">vmax2</span><span class="o">=</span><span class="n">vmax</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
     <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
-        <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span> <span class="o">=</span> <span class="p">[</span><span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">d</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">[:</span><span class="mi">3</span><span class="p">]]</span>
+        <span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span> <span class="o">=</span> <span class="p">[</span><span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">d</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">[:</span><span class="mi">3</span><span class="p">]]</span>
         <span class="n">alpha</span> <span class="o">=</span> <span class="kc">None</span> 
         <span class="k">if</span> <span class="n">data</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">alpha</span> <span class="o">=</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">)</span>
+            <span class="n">alpha</span> <span class="o">=</span> <span class="n">_from_hdf_data</span><span class="p">(</span><span class="n">h5</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfmname</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">)</span>
 
         <span class="bp">cls</span> <span class="o">=</span> <span class="n">VertexRGB</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">Vertex</span><span class="p">)</span> <span class="k">else</span> <span class="n">VolumeRGB</span>
-        <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="n">alpha</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+        <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="n">alpha</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
     <span class="k">else</span><span class="p">:</span>
         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;Invalid Dataview specification&quot;</span><span class="p">)</span>
 
@@ -175,7 +177,7 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">sdict</span>
 
     <span class="nd">@staticmethod</span>
-    <span class="k">def</span> <span class="nf">from_hdf</span><span class="p">(</span><span class="n">node</span><span class="p">):</span>
+    <span class="k">def</span> <span class="nf">from_hdf</span><span class="p">(</span><span class="n">node</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
         <span class="n">data</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">u</span><span class="p">(</span><span class="n">node</span><span class="p">[</span><span class="mi">0</span><span class="p">]))</span>
         <span class="n">desc</span> <span class="o">=</span> <span class="n">node</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
         <span class="k">try</span><span class="p">:</span>
@@ -201,9 +203,9 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
             <span class="n">xfm</span> <span class="o">=</span> <span class="kc">None</span> <span class="k">if</span> <span class="n">xfmname</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">xfmname</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
             <span class="k">return</span> <span class="n">_from_hdf_view</span><span class="p">(</span><span class="n">node</span><span class="o">.</span><span class="n">file</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">xfm</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="n">cmap</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">description</span><span class="o">=</span><span class="n">desc</span><span class="p">,</span> 
-                                  <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="o">**</span><span class="n">attrs</span><span class="p">)</span>
+                                  <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">attrs</span><span class="p">)</span>
         <span class="k">else</span><span class="p">:</span>
-            <span class="n">views</span> <span class="o">=</span> <span class="p">[</span><span class="n">_from_hdf_view</span><span class="p">(</span><span class="n">node</span><span class="o">.</span><span class="n">file</span><span class="p">,</span> <span class="n">d</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span><span class="p">,</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">xfname</span><span class="p">)]</span>
+            <span class="n">views</span> <span class="o">=</span> <span class="p">[</span><span class="n">_from_hdf_view</span><span class="p">(</span><span class="n">node</span><span class="o">.</span><span class="n">file</span><span class="p">,</span> <span class="n">d</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span><span class="p">,</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)]</span>
             <span class="k">raise</span> <span class="ne">NotImplementedError</span>
 
     <span class="k">def</span> <span class="nf">_write_hdf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s2">&quot;data&quot;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
@@ -224,28 +226,36 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
         <span class="n">view</span><span class="p">[</span><span class="mi">7</span><span class="p">]</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="n">xfmname</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">view</span>
 
+    <span class="k">def</span> <span class="nf">get_cmapdict</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Returns a dictionary with cmap information.&quot;&quot;&quot;</span>
+
+        <span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">colors</span><span class="p">,</span> <span class="n">pyplot</span> <span class="k">as</span> <span class="n">plt</span>
+
+        <span class="k">try</span><span class="p">:</span>
+            <span class="c1"># plt.get_cmap accepts:</span>
+            <span class="c1"># - matplotlib colormap names</span>
+            <span class="c1"># - pycortex colormap names previously registered in matplotlib</span>
+            <span class="c1"># - matplotlib.colors.Colormap instances</span>
+            <span class="n">cmap</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">get_cmap</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+            <span class="c1"># unknown colormap, test whether it&#39;s in pycortex colormaps</span>
+            <span class="n">cmapdir</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;webgl&#39;</span><span class="p">,</span> <span class="s1">&#39;colormaps&#39;</span><span class="p">)</span>
+            <span class="n">colormaps</span> <span class="o">=</span> <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmapdir</span><span class="p">,</span> <span class="s2">&quot;*.png&quot;</span><span class="p">))</span>
+            <span class="n">colormaps</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(((</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">c</span><span class="p">)[</span><span class="mi">1</span><span class="p">][:</span><span class="o">-</span><span class="mi">4</span><span class="p">],</span> <span class="n">c</span><span class="p">)</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">colormaps</span><span class="p">))</span>
+            <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">cmap</span> <span class="ow">in</span> <span class="n">colormaps</span><span class="p">:</span>
+                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Unkown color map </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">)</span>
+            <span class="n">I</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">colormaps</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">])</span>
+            <span class="n">cmap</span> <span class="o">=</span> <span class="n">colors</span><span class="o">.</span><span class="n">ListedColormap</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">squeeze</span><span class="p">(</span><span class="n">I</span><span class="p">))</span>
+            <span class="c1"># Register colormap to matplotlib to avoid loading it again</span>
+            <span class="n">plt</span><span class="o">.</span><span class="n">register_cmap</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">,</span> <span class="n">cmap</span><span class="p">)</span>
+
+        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="n">cmap</span><span class="o">=</span><span class="n">cmap</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">vmin</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">vmax</span><span class="p">)</span>
+
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">raw</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">colors</span><span class="p">,</span> <span class="n">cm</span><span class="p">,</span> <span class="n">pyplot</span> <span class="k">as</span> <span class="n">plt</span>
-        <span class="kn">import</span> <span class="nn">glob</span><span class="o">,</span> <span class="nn">os</span>
-        <span class="c1"># Get colormap from matplotlib or pycortex colormaps</span>
-        <span class="c1">## -- redundant code, here and in cortex/quicklflat.py -- ##</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">,</span> <span class="n">string_types</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">cmap</span> <span class="ow">in</span> <span class="n">cm</span><span class="o">.</span><span class="vm">__dict__</span><span class="p">:</span>
-                <span class="c1"># unknown colormap, test whether it&#39;s in pycortex colormaps</span>
-                <span class="n">cmapdir</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;webgl&#39;</span><span class="p">,</span> <span class="s1">&#39;colormaps&#39;</span><span class="p">)</span>
-                <span class="n">colormaps</span> <span class="o">=</span> <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmapdir</span><span class="p">,</span> <span class="s2">&quot;*.png&quot;</span><span class="p">))</span>
-                <span class="n">colormaps</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(((</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">c</span><span class="p">)[</span><span class="mi">1</span><span class="p">][:</span><span class="o">-</span><span class="mi">4</span><span class="p">],</span><span class="n">c</span><span class="p">)</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">colormaps</span><span class="p">))</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">cmap</span> <span class="ow">in</span> <span class="n">colormaps</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unkown color map!&#39;</span><span class="p">)</span>
-                <span class="n">I</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">colormaps</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">])</span>
-                <span class="n">cmap</span> <span class="o">=</span> <span class="n">colors</span><span class="o">.</span><span class="n">ListedColormap</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">squeeze</span><span class="p">(</span><span class="n">I</span><span class="p">))</span>
-                <span class="c1"># Register colormap while we&#39;re at it</span>
-                <span class="n">cm</span><span class="o">.</span><span class="n">register_cmap</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">,</span><span class="n">cmap</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">cmap</span> <span class="o">=</span> <span class="n">cm</span><span class="o">.</span><span class="n">get_cmap</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">,</span> <span class="n">colors</span><span class="o">.</span><span class="n">Colormap</span><span class="p">):</span>
-            <span class="n">cmap</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">cmap</span>
+        <span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">colors</span><span class="p">,</span> <span class="n">cm</span>
+
+        <span class="n">cmap</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_cmapdict</span><span class="p">()[</span><span class="s1">&#39;cmap&#39;</span><span class="p">]</span>
         <span class="c1"># Normalize colors according to vmin, vmax</span>
         <span class="n">norm</span> <span class="o">=</span> <span class="n">colors</span><span class="o">.</span><span class="n">Normalize</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">vmin</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">vmax</span><span class="p">)</span> 
         <span class="n">cmapper</span> <span class="o">=</span> <span class="n">cm</span><span class="o">.</span><span class="n">ScalarMappable</span><span class="p">(</span><span class="n">norm</span><span class="o">=</span><span class="n">norm</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="n">cmap</span><span class="p">)</span>
@@ -254,6 +264,7 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
         <span class="n">color_data</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">clip</span><span class="p">(</span><span class="n">color_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="mi">255</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">uint8</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">color_data</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">)</span>
 
+
 <span class="k">class</span> <span class="nc">Multiview</span><span class="p">(</span><span class="n">Dataview</span><span class="p">):</span>
     <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">views</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">):</span>
         <span class="k">for</span> <span class="n">view</span> <span class="ow">in</span> <span class="n">views</span><span class="p">:</span>
@@ -267,8 +278,10 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
             <span class="k">for</span> <span class="n">sv</span> <span class="ow">in</span> <span class="n">view</span><span class="o">.</span><span class="n">uniques</span><span class="p">(</span><span class="n">collapse</span><span class="o">=</span><span class="n">collapse</span><span class="p">):</span>
                 <span class="k">yield</span> <span class="n">sv</span>
 
-<div class="viewcode-block" id="Volume"><a class="viewcode-back" href="../../../generated/cortex.dataset.Volume.html#cortex.dataset.Volume">[docs]</a><span class="k">class</span> <span class="nc">Volume</span><span class="p">(</span><span class="n">VolumeData</span><span class="p">,</span> <span class="n">Dataview</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="Volume">
+<a class="viewcode-back" href="../../../generated/cortex.dataset.Volume.html#cortex.dataset.Volume">[docs]</a>
+<span class="k">class</span> <span class="nc">Volume</span><span class="p">(</span><span class="n">VolumeData</span><span class="p">,</span> <span class="n">Dataview</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Encapsulates a 3D volume or 4D volumetric movie. Includes information on how</span>
 <span class="sd">    the volume should be colormapped for display purposes.</span>
 
@@ -303,7 +316,9 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
 <span class="sd">        All additional arguments in kwargs are passed to the VolumeData and Dataview</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
-<div class="viewcode-block" id="Volume.__init__"><a class="viewcode-back" href="../../../generated/Volume/cortex.dataset.Volume.__init__.html#cortex.dataset.Volume.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> 
+<div class="viewcode-block" id="Volume.__init__">
+<a class="viewcode-back" href="../../../generated/Volume/cortex.dataset.Volume.__init__.html#cortex.dataset.Volume.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> 
                  <span class="n">cmap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="nb">super</span><span class="p">(</span><span class="n">Volume</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">mask</span><span class="p">,</span> 
                                      <span class="n">cmap</span><span class="o">=</span><span class="n">cmap</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">,</span>
@@ -314,6 +329,7 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">vmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">vmax</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">vmax</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> \
             <span class="n">np</span><span class="o">.</span><span class="n">percentile</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="p">),</span> <span class="mi">99</span><span class="p">)</span></div>
 
+
     <span class="k">def</span> <span class="nf">_write_hdf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s2">&quot;data&quot;</span><span class="p">):</span>
         <span class="n">datanode</span> <span class="o">=</span> <span class="n">VolumeData</span><span class="o">.</span><span class="n">_write_hdf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h5</span><span class="p">)</span>
         <span class="n">viewnode</span> <span class="o">=</span> <span class="n">Dataview</span><span class="o">.</span><span class="n">_write_hdf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">name</span><span class="p">,</span>
@@ -328,8 +344,11 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
                          <span class="n">description</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">description</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">state</span><span class="p">,</span>
                          <span class="o">**</span><span class="bp">self</span><span class="o">.</span><span class="n">attrs</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Vertex"><a class="viewcode-back" href="../../../generated/cortex.dataset.Vertex.html#cortex.dataset.Vertex">[docs]</a><span class="k">class</span> <span class="nc">Vertex</span><span class="p">(</span><span class="n">VertexData</span><span class="p">,</span> <span class="n">Dataview</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="Vertex">
+<a class="viewcode-back" href="../../../generated/cortex.dataset.Vertex.html#cortex.dataset.Vertex">[docs]</a>
+<span class="k">class</span> <span class="nc">Vertex</span><span class="p">(</span><span class="n">VertexData</span><span class="p">,</span> <span class="n">Dataview</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Encapsulates a 1D vertex map or 2D vertex movie. Includes information on how</span>
 <span class="sd">    the data should be colormapped for display purposes.</span>
 
@@ -357,7 +376,9 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
 <span class="sd">        All additional arguments in kwargs are passed to the VolumeData and Dataview</span>
 
 <span class="sd">    &quot;&quot;&quot;</span>
-<div class="viewcode-block" id="Vertex.__init__"><a class="viewcode-back" href="../../../generated/Vertex/cortex.dataset.Vertex.__init__.html#cortex.dataset.Vertex.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<div class="viewcode-block" id="Vertex.__init__">
+<a class="viewcode-back" href="../../../generated/Vertex/cortex.dataset.Vertex.__init__.html#cortex.dataset.Vertex.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
         <span class="nb">super</span><span class="p">(</span><span class="n">Vertex</span><span class="p">,</span> <span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="n">cmap</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="n">vmin</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="n">vmax</span><span class="p">,</span> 
                                      <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
         <span class="c1"># set vmin and vmax</span>
@@ -366,6 +387,7 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">vmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">vmax</span> <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">vmax</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> \
             <span class="n">np</span><span class="o">.</span><span class="n">percentile</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="p">),</span> <span class="mi">99</span><span class="p">)</span></div>
 
+
     <span class="k">def</span> <span class="nf">_write_hdf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s2">&quot;data&quot;</span><span class="p">):</span>
         <span class="n">datanode</span> <span class="o">=</span> <span class="n">VertexData</span><span class="o">.</span><span class="n">_write_hdf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h5</span><span class="p">)</span>
         <span class="n">viewnode</span> <span class="o">=</span> <span class="n">Dataview</span><span class="o">.</span><span class="n">_write_hdf</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">h5</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">name</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">name</span><span class="p">])</span>
@@ -378,9 +400,11 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
                          <span class="n">description</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">description</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">state</span><span class="p">,</span>
                          <span class="o">**</span><span class="bp">self</span><span class="o">.</span><span class="n">attrs</span><span class="p">)</span>
 
-<div class="viewcode-block" id="Vertex.map"><a class="viewcode-back" href="../../../generated/Vertex/cortex.dataset.Vertex.map.html#cortex.dataset.Vertex.map">[docs]</a>    <span class="k">def</span> <span class="nf">map</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">target_subj</span><span class="p">,</span> <span class="n">surface_type</span><span class="o">=</span><span class="s1">&#39;fiducial&#39;</span><span class="p">,</span> 
+<div class="viewcode-block" id="Vertex.map">
+<a class="viewcode-back" href="../../../generated/Vertex/cortex.dataset.Vertex.map.html#cortex.dataset.Vertex.map">[docs]</a>
+    <span class="k">def</span> <span class="nf">map</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">target_subj</span><span class="p">,</span> <span class="n">surface_type</span><span class="o">=</span><span class="s1">&#39;fiducial&#39;</span><span class="p">,</span> 
             <span class="n">hemi</span><span class="o">=</span><span class="s1">&#39;both&#39;</span><span class="p">,</span> <span class="n">fs_subj</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Map this data from this surface to another surface</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Map this data from this surface to another surface</span>
 <span class="sd">        </span>
 <span class="sd">        Calls `cortex.freesurfer.vertex_to_vertex()`  with this </span>
 <span class="sd">        vertex object as the first argument.</span>
@@ -414,7 +438,9 @@ <h1>Source code for cortex.dataset.views</h1><div class="highlight"><pre>
         <span class="k">elif</span> <span class="n">hemi</span> <span class="o">==</span> <span class="s1">&#39;rh&#39;</span><span class="p">:</span>
             <span class="n">new_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">hstack</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">new_data</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">),</span> <span class="n">new_data</span><span class="p">[</span><span class="mi">1</span><span class="p">]])</span>
         <span class="n">vx</span> <span class="o">=</span> <span class="n">Vertex</span><span class="p">(</span><span class="n">new_data</span><span class="p">,</span> <span class="n">target_subj</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">vmin</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">vmax</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">cmap</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">vx</span></div></div>
+        <span class="k">return</span> <span class="n">vx</span></div>
+</div>
+
         
 <span class="k">def</span> <span class="nf">u</span><span class="p">(</span><span class="n">s</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf8&#39;</span><span class="p">):</span>
     <span class="k">try</span><span class="p">:</span>
@@ -475,7 +501,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -483,8 +509,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -498,11 +524,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/freesurfer.html b/_modules/cortex/freesurfer.html
index 05771efe1..8abf05063 100644
--- a/_modules/cortex/freesurfer.html
+++ b/_modules/cortex/freesurfer.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.freesurfer &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.freesurfer &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,31 +37,32 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
 <span></span><span class="sd">&quot;&quot;&quot;Contains functions for interfacing with freesurfer</span>
 <span class="sd">&quot;&quot;&quot;</span>
 <span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">print_function</span>
-<span class="kn">import</span> <span class="nn">os</span>
+
 <span class="kn">import</span> <span class="nn">copy</span>
+<span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">import</span> <span class="nn">shlex</span>
 <span class="kn">import</span> <span class="nn">shutil</span>
 <span class="kn">import</span> <span class="nn">struct</span>
+<span class="kn">import</span> <span class="nn">subprocess</span> <span class="k">as</span> <span class="nn">sp</span>
 <span class="kn">import</span> <span class="nn">tempfile</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">import</span> <span class="nn">shlex</span>
-<span class="kn">import</span> <span class="nn">subprocess</span> <span class="k">as</span> <span class="nn">sp</span>
 <span class="kn">from</span> <span class="nn">builtins</span> <span class="kn">import</span> <span class="nb">input</span>
+<span class="kn">from</span> <span class="nn">tempfile</span> <span class="kn">import</span> <span class="n">NamedTemporaryFile</span>
 
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">nibabel</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">nibabel</span> <span class="kn">import</span> <span class="n">gifti</span>
-<span class="kn">from</span> <span class="nn">tempfile</span> <span class="kn">import</span> <span class="n">NamedTemporaryFile</span>
-<span class="kn">from</span> <span class="nn">scipy.spatial.kdtree</span> <span class="kn">import</span> <span class="n">KDTree</span>
 <span class="kn">from</span> <span class="nn">scipy.linalg</span> <span class="kn">import</span> <span class="n">lstsq</span>
 <span class="kn">from</span> <span class="nn">scipy.sparse</span> <span class="kn">import</span> <span class="n">coo_matrix</span>
+<span class="kn">from</span> <span class="nn">scipy.spatial</span> <span class="kn">import</span> <span class="n">KDTree</span>
 
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">anat</span><span class="p">,</span> <span class="n">database</span>
 
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">database</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">anat</span>
 
-
-<div class="viewcode-block" id="get_paths"><a class="viewcode-back" href="../../generated/cortex.freesurfer.get_paths.html#cortex.freesurfer.get_paths">[docs]</a><span class="k">def</span> <span class="nf">get_paths</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;patch&quot;</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Retrive paths for all surfaces for a subject processed by freesurfer</span>
+<div class="viewcode-block" id="get_paths">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.get_paths.html#cortex.freesurfer.get_paths">[docs]</a>
+<span class="k">def</span> <span class="nf">get_paths</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;patch&quot;</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Retrieve paths for all surfaces for a subject processed by freesurfer</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -90,8 +90,11 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">base</span><span class="p">,</span> <span class="s2">&quot;surf&quot;</span><span class="p">,</span> <span class="n">hemi</span><span class="o">+</span><span class="s2">&quot;.</span><span class="si">{name}</span><span class="s2">_slim.obj&quot;</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="autorecon"><a class="viewcode-back" href="../../generated/cortex.freesurfer.autorecon.html#cortex.freesurfer.autorecon">[docs]</a><span class="k">def</span> <span class="nf">autorecon</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;all&quot;</span><span class="p">,</span> <span class="n">parallel</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">n_cores</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Run Freesurfer&#39;s autorecon-all command for a given freesurfer subject</span>
+
+<div class="viewcode-block" id="autorecon">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.autorecon.html#cortex.freesurfer.autorecon">[docs]</a>
+<span class="k">def</span> <span class="nf">autorecon</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;all&quot;</span><span class="p">,</span> <span class="n">parallel</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">n_cores</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Run Freesurfer&#39;s autorecon-all command for a given freesurfer subject</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -132,8 +135,11 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="n">sp</span><span class="o">.</span><span class="n">check_call</span><span class="p">(</span><span class="n">shlex</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span></div>
 
 
-<div class="viewcode-block" id="flatten"><a class="viewcode-back" href="../../generated/cortex.freesurfer.flatten.html#cortex.freesurfer.flatten">[docs]</a><span class="k">def</span> <span class="nf">flatten</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">patch</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">save_every</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Perform flattening of a brain using freesurfer</span>
+
+<div class="viewcode-block" id="flatten">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.flatten.html#cortex.freesurfer.flatten">[docs]</a>
+<span class="k">def</span> <span class="nf">flatten</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">patch</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">save_every</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Perform flattening of a brain using freesurfer</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -180,8 +186,16 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="kc">False</span></div>
 
 
-<div class="viewcode-block" id="import_subj"><a class="viewcode-back" href="../../generated/cortex.freesurfer.import_subj.html#cortex.freesurfer.import_subj">[docs]</a><span class="k">def</span> <span class="nf">import_subj</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">cx_subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">whitematter_surf</span><span class="o">=</span><span class="s1">&#39;smoothwm&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Imports a subject from freesurfer</span>
+
+<div class="viewcode-block" id="import_subj">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.import_subj.html#cortex.freesurfer.import_subj">[docs]</a>
+<span class="k">def</span> <span class="nf">import_subj</span><span class="p">(</span>
+    <span class="n">freesurfer_subject</span><span class="p">,</span>
+    <span class="n">pycortex_subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+    <span class="n">whitematter_surf</span><span class="o">=</span><span class="s2">&quot;smoothwm&quot;</span><span class="p">,</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Imports a subject from freesurfer</span>
 
 <span class="sd">    This will overwrite (after giving a warning and an option to continue) the </span>
 <span class="sd">    pre-existing subject, including all blender cuts, masks, transforms, etc., and</span>
@@ -191,67 +205,119 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
-<span class="sd">    fs_subject : string</span>
+<span class="sd">    freesurfer_subject : str</span>
 <span class="sd">        Freesurfer subject name</span>
-<span class="sd">    cx_subject : string, optional</span>
-<span class="sd">        Pycortex subject name (These variable names should be changed). By default uses</span>
-<span class="sd">        the same name as the freesurfer subject. Best to stick to that convention, if </span>
-<span class="sd">        possible (your life will go more smoothly.) This optional kwarg is for edge cases. </span>
-<span class="sd">    freesurfer_subject_dir : string, optional</span>
+<span class="sd">    pycortex_subject : str, optional</span>
+<span class="sd">        Pycortex subject name. By default it uses the freesurfer subject name. </span>
+<span class="sd">        It is advised to stick to that convention, if possible </span>
+<span class="sd">        (your life will go more smoothly.)</span>
+<span class="sd">    freesurfer_subject_dir : str, optional</span>
 <span class="sd">        Freesurfer subject directory to pull data from. By default uses the directory</span>
 <span class="sd">        given by the environment variable $SUBJECTS_DIR.</span>
-<span class="sd">    whitematter_surf : string, optional</span>
-<span class="sd">        Which whitematter surface to import as &#39;wm&#39;. By default uses &#39;smoothwm&#39;, but that</span>
-<span class="sd">        surface is smoothed and may not be appropriate. A good alternative is &#39;white&#39;.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">cx_subject</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">cx_subject</span> <span class="o">=</span> <span class="n">fs_subject</span>
-    <span class="c1"># Create and/or replace extant subject. Throws a warning that this will happen.</span>
-    <span class="n">database</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">make_subj</span><span class="p">(</span><span class="n">cx_subject</span><span class="p">)</span>
+<span class="sd">    whitematter_surf : str, optional</span>
+<span class="sd">        Which whitematter surface to import as &#39;wm&#39;. By default uses &#39;smoothwm&#39;, but </span>
+<span class="sd">        that surface is smoothed and may not be appropriate. </span>
+<span class="sd">        A good alternative is &#39;white&#39;.</span>
+<span class="sd">    </span>
+<span class="sd">    Notes</span>
+<span class="sd">    -----</span>
+<span class="sd">    This function uses command line functions from freesurfer, so you should make sure</span>
+<span class="sd">    to have freesurfer sourced before running this function.</span>
 
-    <span class="kn">import</span> <span class="nn">nibabel</span>
-    <span class="n">surfs</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">database</span><span class="o">.</span><span class="n">default_filestore</span><span class="p">,</span> <span class="n">cx_subject</span><span class="p">,</span> <span class="s2">&quot;surfaces&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{name}</span><span class="s2">_</span><span class="si">{hemi}</span><span class="s2">.gii&quot;</span><span class="p">)</span>
-    <span class="n">anats</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">database</span><span class="o">.</span><span class="n">default_filestore</span><span class="p">,</span> <span class="n">cx_subject</span><span class="p">,</span> <span class="s2">&quot;anatomicals&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{name}</span><span class="s2">.nii.gz&quot;</span><span class="p">)</span>
-    <span class="n">surfinfo</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">database</span><span class="o">.</span><span class="n">default_filestore</span><span class="p">,</span> <span class="n">cx_subject</span><span class="p">,</span> <span class="s2">&quot;surface-info&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{name}</span><span class="s2">.npz&quot;</span><span class="p">)</span>
+<span class="sd">    This function will also generate the fiducial surfaces for the subject, which are</span>
+<span class="sd">    halfway between the white matter and pial surfaces. The surfaces will be stored</span>
+<span class="sd">    in the freesurfer subject&#39;s directory. These fiducial surfaces are used for </span>
+<span class="sd">    cutting and flattening.</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+    <span class="c1"># Check if freesurfer is sourced or if subjects dir is passed</span>
     <span class="k">if</span> <span class="n">freesurfer_subject_dir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">freesurfer_subject_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s1">&#39;SUBJECTS_DIR&#39;</span><span class="p">]</span>
-    <span class="n">fspath</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">freesurfer_subject_dir</span><span class="p">,</span> <span class="n">fs_subject</span><span class="p">,</span> <span class="s1">&#39;mri&#39;</span><span class="p">)</span>
-    <span class="n">curvs</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">freesurfer_subject_dir</span><span class="p">,</span> <span class="n">fs_subject</span><span class="p">,</span> <span class="s1">&#39;surf&#39;</span><span class="p">,</span> <span class="s1">&#39;</span><span class="si">{hemi}</span><span class="s1">.</span><span class="si">{name}</span><span class="s1">&#39;</span><span class="p">)</span>
-
-    <span class="c1">#import anatomicals</span>
-    <span class="k">for</span> <span class="n">fsname</span><span class="p">,</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">dict</span><span class="p">(</span><span class="n">T1</span><span class="o">=</span><span class="s2">&quot;raw&quot;</span><span class="p">,</span> <span class="n">aseg</span><span class="o">=</span><span class="s2">&quot;aseg&quot;</span><span class="p">,</span> <span class="n">wm</span><span class="o">=</span><span class="s2">&quot;raw_wm&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-        <span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">fspath</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{fsname}</span><span class="s2">.mgz&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">fsname</span><span class="o">=</span><span class="n">fsname</span><span class="p">)</span>
-        <span class="n">out</span> <span class="o">=</span> <span class="n">anats</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">subj</span><span class="o">=</span><span class="n">cx_subject</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">cmd</span> <span class="o">=</span> <span class="s2">&quot;mri_convert </span><span class="si">{path}</span><span class="s2"> </span><span class="si">{out}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">path</span><span class="o">=</span><span class="n">path</span><span class="p">,</span> <span class="n">out</span><span class="o">=</span><span class="n">out</span><span class="p">)</span>
+        <span class="k">if</span> <span class="s2">&quot;SUBJECTS_DIR&quot;</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">:</span>
+            <span class="n">freesurfer_subject_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s2">&quot;SUBJECTS_DIR&quot;</span><span class="p">]</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+                <span class="s2">&quot;Please source freesurfer before running this function, &quot;</span>
+                <span class="s2">&quot;or pass a path to the freesurfer subjects directory in &quot;</span>
+                <span class="s2">&quot;`freesurfer_subject_dir`&quot;</span>
+            <span class="p">)</span>
+    <span class="n">fs_mri_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">freesurfer_subject_dir</span><span class="p">,</span> <span class="n">freesurfer_subject</span><span class="p">,</span> <span class="s2">&quot;mri&quot;</span><span class="p">)</span>
+    <span class="n">fs_surf_path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">freesurfer_subject_dir</span><span class="p">,</span> <span class="n">freesurfer_subject</span><span class="p">,</span> <span class="s2">&quot;surf&quot;</span><span class="p">)</span>
+    <span class="n">fs_anat_template</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">fs_mri_path</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{name}</span><span class="s2">.mgz&quot;</span><span class="p">)</span>
+    <span class="n">fs_surf_template</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">fs_surf_path</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{hemi}</span><span class="s2">.</span><span class="si">{name}</span><span class="s2">&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Now deal with pycortex</span>
+    <span class="k">if</span> <span class="n">pycortex_subject</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">pycortex_subject</span> <span class="o">=</span> <span class="n">freesurfer_subject</span>
+    <span class="c1"># Create and/or replace extant subject. Throws a warning that this will happen.</span>
+    <span class="n">database</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">make_subj</span><span class="p">(</span><span class="n">pycortex_subject</span><span class="p">)</span>
+
+    <span class="n">filestore</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">database</span><span class="o">.</span><span class="n">default_filestore</span><span class="p">,</span> <span class="n">pycortex_subject</span><span class="p">)</span>
+    <span class="n">anat_template</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">filestore</span><span class="p">,</span> <span class="s2">&quot;anatomicals&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{name}</span><span class="s2">.nii.gz&quot;</span><span class="p">)</span>
+    <span class="n">surf_template</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">filestore</span><span class="p">,</span> <span class="s2">&quot;surfaces&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{name}</span><span class="s2">_</span><span class="si">{hemi}</span><span class="s2">.gii&quot;</span><span class="p">)</span>
+    <span class="n">surfinfo_template</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">filestore</span><span class="p">,</span> <span class="s2">&quot;surface-info&quot;</span><span class="p">,</span> <span class="s2">&quot;</span><span class="si">{name}</span><span class="s2">.npz&quot;</span><span class="p">)</span>
+
+    <span class="c1"># Dictionary mapping for volumes to be imported over from freesurfer</span>
+    <span class="n">volumes_fs2pycortex</span> <span class="o">=</span> <span class="p">{</span><span class="s2">&quot;T1&quot;</span><span class="p">:</span> <span class="s2">&quot;raw&quot;</span><span class="p">,</span> <span class="s2">&quot;aseg&quot;</span><span class="p">:</span> <span class="s2">&quot;aseg&quot;</span><span class="p">,</span> <span class="s2">&quot;wm&quot;</span><span class="p">:</span> <span class="s2">&quot;raw_wm&quot;</span><span class="p">}</span>
+    <span class="c1"># Import volumes</span>
+    <span class="k">for</span> <span class="n">fsname</span><span class="p">,</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">volumes_fs2pycortex</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="n">in_volume</span> <span class="o">=</span> <span class="n">fs_anat_template</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="n">fsname</span><span class="p">)</span>
+        <span class="n">out_volume</span> <span class="o">=</span> <span class="n">anat_template</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="n">name</span><span class="p">)</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="s2">&quot;mri_convert </span><span class="si">{path}</span><span class="s2"> </span><span class="si">{out}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">path</span><span class="o">=</span><span class="n">in_volume</span><span class="p">,</span> <span class="n">out</span><span class="o">=</span><span class="n">out_volume</span><span class="p">)</span>
         <span class="n">sp</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span><span class="n">shlex</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
 
     <span class="c1"># (Re-)Make the fiducial files</span>
     <span class="c1"># NOTE: these are IN THE FREESURFER $SUBJECTS_DIR !! which can cause confusion.</span>
-    <span class="n">make_fiducial</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="n">freesurfer_subject_dir</span><span class="p">)</span>
-
-    <span class="c1"># Freesurfer uses FOV/2 for center, let&#39;s set the surfaces to use the</span>
-    <span class="c1"># magnet isocenter</span>
-    <span class="n">trans</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">out</span><span class="p">)</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()[:</span><span class="mi">3</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">surfmove</span> <span class="o">=</span> <span class="n">trans</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">sign</span><span class="p">(</span><span class="n">trans</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mi">128</span><span class="p">,</span> <span class="mi">128</span><span class="p">,</span> <span class="mi">128</span><span class="p">]</span>
-
-    <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">formats</span>
-    <span class="k">for</span> <span class="n">fsname</span><span class="p">,</span> <span class="n">name</span> <span class="ow">in</span> <span class="p">[(</span><span class="n">whitematter_surf</span><span class="p">,</span> <span class="s2">&quot;wm&quot;</span><span class="p">),</span> <span class="p">(</span><span class="s1">&#39;pial&#39;</span><span class="p">,</span> <span class="s2">&quot;pia&quot;</span><span class="p">),</span> <span class="p">(</span><span class="s1">&#39;inflated&#39;</span><span class="p">,</span> <span class="s2">&quot;inflated&quot;</span><span class="p">)]:</span>
+    <span class="n">make_fiducial</span><span class="p">(</span><span class="n">freesurfer_subject</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="n">freesurfer_subject_dir</span><span class="p">)</span>
+
+    <span class="c1"># Dictionary mapping for surfaces to be imported over from freesurfer</span>
+    <span class="n">surfaces_fs2pycortex</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="n">whitematter_surf</span><span class="p">:</span> <span class="s2">&quot;wm&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;pial&quot;</span><span class="p">:</span> <span class="s2">&quot;pia&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;inflated&quot;</span><span class="p">:</span> <span class="s2">&quot;inflated&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+    <span class="c1"># Import surfaces</span>
+    <span class="k">for</span> <span class="n">fsname</span><span class="p">,</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">surfaces_fs2pycortex</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
         <span class="k">for</span> <span class="n">hemi</span> <span class="ow">in</span> <span class="p">(</span><span class="s2">&quot;lh&quot;</span><span class="p">,</span> <span class="s2">&quot;rh&quot;</span><span class="p">):</span>
-            <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">get_surf</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">fsname</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="n">freesurfer_subject_dir</span><span class="p">)</span>
-            <span class="n">fname</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">surfs</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">subj</span><span class="o">=</span><span class="n">cx_subject</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">name</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="n">hemi</span><span class="p">))</span>
-            <span class="n">formats</span><span class="o">.</span><span class="n">write_gii</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">pts</span><span class="o">=</span><span class="n">pts</span> <span class="o">+</span> <span class="n">surfmove</span><span class="p">,</span> <span class="n">polys</span><span class="o">=</span><span class="n">polys</span><span class="p">)</span>
-
-    <span class="k">for</span> <span class="n">curv</span><span class="p">,</span> <span class="n">info</span> <span class="ow">in</span> <span class="nb">dict</span><span class="p">(</span><span class="n">sulc</span><span class="o">=</span><span class="s2">&quot;sulcaldepth&quot;</span><span class="p">,</span> <span class="n">thickness</span><span class="o">=</span><span class="s2">&quot;thickness&quot;</span><span class="p">,</span> <span class="n">curv</span><span class="o">=</span><span class="s2">&quot;curvature&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-        <span class="n">lh</span><span class="p">,</span> <span class="n">rh</span> <span class="o">=</span> <span class="p">[</span><span class="n">parse_curv</span><span class="p">(</span><span class="n">curvs</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">hemi</span><span class="o">=</span><span class="n">hemi</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">curv</span><span class="p">))</span> <span class="k">for</span> <span class="n">hemi</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;lh&#39;</span><span class="p">,</span> <span class="s1">&#39;rh&#39;</span><span class="p">]]</span>
-        <span class="n">np</span><span class="o">.</span><span class="n">savez</span><span class="p">(</span><span class="n">surfinfo</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">subj</span><span class="o">=</span><span class="n">cx_subject</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">info</span><span class="p">),</span> <span class="n">left</span><span class="o">=-</span><span class="n">lh</span><span class="p">,</span> <span class="n">right</span><span class="o">=-</span><span class="n">rh</span><span class="p">)</span>
-
+            <span class="n">in_surface</span> <span class="o">=</span> <span class="n">fs_surf_template</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">hemi</span><span class="o">=</span><span class="n">hemi</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">fsname</span><span class="p">)</span>
+            <span class="n">out_surface</span> <span class="o">=</span> <span class="n">surf_template</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="n">name</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="n">hemi</span><span class="p">)</span>
+            <span class="c1"># Use the --to-scanner flag to store the surfaces with the same coordinate</span>
+            <span class="c1"># system as the volume data, rather than the TKR coordinate system, which</span>
+            <span class="c1"># has the center set to FOV/2.</span>
+            <span class="c1"># NOTE: the resulting gifti surfaces will look misaligned with respect to</span>
+            <span class="c1"># the anatomical volumes when visualized in freeview, because freeview </span>
+            <span class="c1"># expects the surfaces to be in TKR coordinates (with center set to FOV/2).</span>
+            <span class="c1"># But the surfaces stored in the pycortex database are only to be used by</span>
+            <span class="c1"># pycortex, so that&#39;s fine.</span>
+            <span class="n">cmd</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;mris_convert --to-scanner </span><span class="si">{</span><span class="n">in_surface</span><span class="si">}</span><span class="s2"> </span><span class="si">{</span><span class="n">out_surface</span><span class="si">}</span><span class="s2">&quot;</span>
+            <span class="n">sp</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span><span class="n">shlex</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span>
+
+    <span class="c1"># Dictionary mapping for curvature and extra info to be imported </span>
+    <span class="n">info_fs2pycortex</span> <span class="o">=</span> <span class="p">{</span>
+        <span class="s2">&quot;sulc&quot;</span><span class="p">:</span> <span class="s2">&quot;sulcaldepth&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;thickness&quot;</span><span class="p">:</span> <span class="s2">&quot;thickness&quot;</span><span class="p">,</span>
+        <span class="s2">&quot;curv&quot;</span><span class="p">:</span> <span class="s2">&quot;curvature&quot;</span><span class="p">,</span>
+    <span class="p">}</span>
+    <span class="c1"># Import curvature and extra information</span>
+    <span class="k">for</span> <span class="n">fsname</span><span class="p">,</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">info_fs2pycortex</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+        <span class="n">in_info_lhrh</span> <span class="o">=</span> <span class="p">[</span>
+            <span class="n">fs_surf_template</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">hemi</span><span class="o">=</span><span class="n">hemi</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">fsname</span><span class="p">)</span> <span class="k">for</span> <span class="n">hemi</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;lh&quot;</span><span class="p">,</span> <span class="s2">&quot;rh&quot;</span><span class="p">]</span>
+        <span class="p">]</span>
+        <span class="n">lh</span><span class="p">,</span> <span class="n">rh</span> <span class="o">=</span> <span class="p">[</span><span class="n">parse_curv</span><span class="p">(</span><span class="n">in_info</span><span class="p">)</span> <span class="k">for</span> <span class="n">in_info</span> <span class="ow">in</span> <span class="n">in_info_lhrh</span><span class="p">]</span>
+        <span class="n">np</span><span class="o">.</span><span class="n">savez</span><span class="p">(</span>
+            <span class="n">surfinfo_template</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="n">name</span><span class="p">),</span> 
+            <span class="n">left</span><span class="o">=-</span><span class="n">lh</span><span class="p">,</span> 
+            <span class="n">right</span><span class="o">=-</span><span class="n">rh</span>
+        <span class="p">)</span>
+    <span class="c1"># Finally update the database by re-initializing it</span>
     <span class="n">database</span><span class="o">.</span><span class="n">db</span> <span class="o">=</span> <span class="n">database</span><span class="o">.</span><span class="n">Database</span><span class="p">()</span></div>
 
 
-<div class="viewcode-block" id="import_flat"><a class="viewcode-back" href="../../generated/cortex.freesurfer.import_flat.html#cortex.freesurfer.import_flat">[docs]</a><span class="k">def</span> <span class="nf">import_flat</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">patch</span><span class="p">,</span> <span class="n">hemis</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;lh&#39;</span><span class="p">,</span> <span class="s1">&#39;rh&#39;</span><span class="p">],</span> <span class="n">cx_subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+
+<div class="viewcode-block" id="import_flat">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.import_flat.html#cortex.freesurfer.import_flat">[docs]</a>
+<span class="k">def</span> <span class="nf">import_flat</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">patch</span><span class="p">,</span> <span class="n">hemis</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;lh&#39;</span><span class="p">,</span> <span class="s1">&#39;rh&#39;</span><span class="p">],</span> <span class="n">cx_subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                 <span class="n">flat_type</span><span class="o">=</span><span class="s1">&#39;freesurfer&#39;</span><span class="p">,</span> <span class="n">auto_overwrite</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                 <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">clean</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Imports a flat brain from freesurfer</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Imports a flat brain from freesurfer</span>
 
 <span class="sd">    NOTE: This will delete the overlays.svg file for this subject, since THE</span>
 <span class="sd">    FLATMAPS WILL CHANGE, as well as all cached information (e.g. old flatmap </span>
@@ -268,7 +334,7 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
 <span class="sd">    cx_subject : str</span>
 <span class="sd">        Pycortex subject name</span>
 <span class="sd">    freesurfer_subject_dir : str</span>
-<span class="sd">        directory for freesurfer subjects. None defaults to evironment variable</span>
+<span class="sd">        directory for freesurfer subjects. None defaults to environment variable</span>
 <span class="sd">        $SUBJECTS_DIR</span>
 <span class="sd">    clean : bool</span>
 <span class="sd">        If True, the flat surface is cleaned to remove the disconnected polys.</span>
@@ -318,11 +384,12 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="n">overlays_file</span> <span class="o">=</span> <span class="n">database</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">get_paths</span><span class="p">(</span><span class="n">cx_subject</span><span class="p">)[</span><span class="s1">&#39;overlays&#39;</span><span class="p">]</span>
     <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">overlays_file</span><span class="p">):</span>
         <span class="n">os</span><span class="o">.</span><span class="n">unlink</span><span class="p">(</span><span class="n">overlays_file</span><span class="p">)</span></div>
+
     <span class="c1"># Regenerate it? </span>
 
 
 <span class="k">def</span> <span class="nf">_remove_disconnected_polys</span><span class="p">(</span><span class="n">polys</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Remove polygons that are not in the main connected component.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Remove polygons that are not in the main connected component.</span>
 <span class="sd">    </span>
 <span class="sd">    This function creates a sparse graph based on edges in the input.</span>
 <span class="sd">    Then it computes the connected components, and returns only the polygons</span>
@@ -361,7 +428,7 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">_move_disconnect_points_to_zero</span><span class="p">(</span><span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Change coordinates of points not in polygons to zero.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Change coordinates of points not in polygons to zero.</span>
 <span class="sd">    </span>
 <span class="sd">    This cleaning step is useful after _remove_disconnected_polys, to</span>
 <span class="sd">    avoid using this points in boundaries computations (through pts.max(axis=0)</span>
@@ -373,8 +440,10 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">pts</span>
 
 
-<div class="viewcode-block" id="make_fiducial"><a class="viewcode-back" href="../../generated/cortex.freesurfer.make_fiducial.html#cortex.freesurfer.make_fiducial">[docs]</a><span class="k">def</span> <span class="nf">make_fiducial</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Make fiducial surface (halfway between white matter and pial surfaces)</span>
+<div class="viewcode-block" id="make_fiducial">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.make_fiducial.html#cortex.freesurfer.make_fiducial">[docs]</a>
+<span class="k">def</span> <span class="nf">make_fiducial</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Make fiducial surface (halfway between white matter and pial surfaces)</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">for</span> <span class="n">hemi</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;lh&#39;</span><span class="p">,</span> <span class="s1">&#39;rh&#39;</span><span class="p">]:</span>
         <span class="n">spts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">get_surf</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="s2">&quot;smoothwm&quot;</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="n">freesurfer_subject_dir</span><span class="p">)</span>
@@ -383,8 +452,11 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="n">write_surf</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="p">(</span><span class="n">spts</span> <span class="o">+</span> <span class="n">ppts</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span><span class="p">,</span> <span class="n">polys</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="parse_surf"><a class="viewcode-back" href="../../generated/cortex.freesurfer.parse_surf.html#cortex.freesurfer.parse_surf">[docs]</a><span class="k">def</span> <span class="nf">parse_surf</span><span class="p">(</span><span class="n">filename</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="parse_surf">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.parse_surf.html#cortex.freesurfer.parse_surf">[docs]</a>
+<span class="k">def</span> <span class="nf">parse_surf</span><span class="p">(</span><span class="n">filename</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
         <span class="c1">#skip magic</span>
@@ -399,8 +471,9 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">pts</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">),</span> <span class="n">polys</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">3</span><span class="p">)</span></div>
 
 
+
 <span class="k">def</span> <span class="nf">write_surf</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">comment</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Write freesurfer surface file</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Write freesurfer surface file</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
         <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="sa">b</span><span class="s1">&#39;</span><span class="se">\xff\xff\xfe</span><span class="s1">&#39;</span><span class="p">)</span>
@@ -412,7 +485,7 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">write_patch</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">edges</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Writes a patch file that is readable by freesurfer.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Writes a patch file that is readable by freesurfer.</span>
 
 <span class="sd">    Note this function is duplicated here and in blendlib. This function</span>
 <span class="sd">    writes freesurfer format, so seems natural to place here, but it</span>
@@ -442,16 +515,21 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
                 <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">pack</span><span class="p">(</span><span class="s1">&#39;&gt;i3f&#39;</span><span class="p">,</span> <span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">,</span> <span class="o">*</span><span class="n">pt</span><span class="p">))</span>
 
 
-<div class="viewcode-block" id="parse_curv"><a class="viewcode-back" href="../../generated/cortex.freesurfer.parse_curv.html#cortex.freesurfer.parse_curv">[docs]</a><span class="k">def</span> <span class="nf">parse_curv</span><span class="p">(</span><span class="n">filename</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="parse_curv">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.parse_curv.html#cortex.freesurfer.parse_curv">[docs]</a>
+<span class="k">def</span> <span class="nf">parse_curv</span><span class="p">(</span><span class="n">filename</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
         <span class="n">fp</span><span class="o">.</span><span class="n">seek</span><span class="p">(</span><span class="mi">15</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">fromstring</span><span class="p">(</span><span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="s1">&#39;&gt;f4&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">byteswap</span><span class="p">()</span><span class="o">.</span><span class="n">newbyteorder</span><span class="p">()</span></div>
 
 
-<div class="viewcode-block" id="parse_patch"><a class="viewcode-back" href="../../generated/cortex.freesurfer.parse_patch.html#cortex.freesurfer.parse_patch">[docs]</a><span class="k">def</span> <span class="nf">parse_patch</span><span class="p">(</span><span class="n">filename</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="parse_patch">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.parse_patch.html#cortex.freesurfer.parse_patch">[docs]</a>
+<span class="k">def</span> <span class="nf">parse_patch</span><span class="p">(</span><span class="n">filename</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
         <span class="n">header</span><span class="p">,</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&gt;i&#39;</span><span class="p">,</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">))</span>
@@ -462,8 +540,11 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">data</span></div>
 
 
-<div class="viewcode-block" id="get_surf"><a class="viewcode-back" href="../../generated/cortex.freesurfer.get_surf.html#cortex.freesurfer.get_surf">[docs]</a><span class="k">def</span> <span class="nf">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">patch</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">flatten_step</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read freesurfer surface file</span>
+
+<div class="viewcode-block" id="get_surf">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.get_surf.html#cortex.freesurfer.get_surf">[docs]</a>
+<span class="k">def</span> <span class="nf">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">patch</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">flatten_step</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Read freesurfer surface file</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">if</span> <span class="nb">type</span> <span class="o">==</span> <span class="s2">&quot;patch&quot;</span><span class="p">:</span>
         <span class="k">assert</span> <span class="n">patch</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span>
@@ -499,8 +580,9 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">get_curv</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="n">freesurfer_subject_dir</span><span class="p">)</span></div>
 
 
+
 <span class="k">def</span> <span class="nf">_move_labels</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">label</span><span class="p">,</span> <span class="n">hemisphere</span><span class="o">=</span><span class="p">(</span><span class="s1">&#39;lh&#39;</span><span class="p">,</span><span class="s1">&#39;rh&#39;</span><span class="p">),</span> <span class="n">fs_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">src_subject</span><span class="o">=</span><span class="s1">&#39;fsaverage&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;subject is a freesurfer subject&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;subject is a freesurfer subject&quot;&quot;&quot;</span>
     <span class="k">if</span> <span class="n">fs_dir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">fs_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s1">&#39;SUBJECTS_DIR&#39;</span><span class="p">]</span>
     <span class="k">for</span> <span class="n">hemi</span> <span class="ow">in</span> <span class="n">hemisphere</span><span class="p">:</span>
@@ -532,7 +614,7 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">_parse_labels</span><span class="p">(</span><span class="n">label_files</span><span class="p">,</span> <span class="n">cx_subject</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Extract values from freesurfer label file(s) and map to vertices</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Extract values from freesurfer label file(s) and map to vertices</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -561,7 +643,7 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">verts</span><span class="p">,</span> <span class="n">values</span>
 
 <span class="k">def</span> <span class="nf">get_label</span><span class="p">(</span><span class="n">cx_subject</span><span class="p">,</span> <span class="n">label</span><span class="p">,</span> <span class="n">fs_subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">fs_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">src_subject</span><span class="o">=</span><span class="s1">&#39;fsaverage&#39;</span><span class="p">,</span> <span class="n">hemisphere</span><span class="o">=</span><span class="p">(</span><span class="s1">&#39;lh&#39;</span><span class="p">,</span> <span class="s1">&#39;rh&#39;</span><span class="p">),</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Get data from a label file for fsaverage subject</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get data from a label file for fsaverage subject</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -592,7 +674,7 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
             <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Transforming label file to subject&#39;s freesurfer directory...&quot;</span><span class="p">)</span>
             <span class="n">_move_labels</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">label</span><span class="p">,</span> <span class="n">hemisphere</span><span class="o">=</span><span class="n">hemisphere</span><span class="p">,</span> <span class="n">fs_dir</span><span class="o">=</span><span class="n">fs_dir</span><span class="p">,</span> <span class="n">src_subject</span><span class="o">=</span><span class="n">src_subject</span><span class="p">)</span>
     <span class="n">verts</span><span class="p">,</span> <span class="n">values</span> <span class="o">=</span> <span class="n">_parse_labels</span><span class="p">(</span><span class="n">label_files</span><span class="p">,</span> <span class="n">cx_subject</span><span class="p">)</span>
-    <span class="n">idx</span> <span class="o">=</span> <span class="n">verts</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">int</span><span class="p">)</span>
+    <span class="n">idx</span> <span class="o">=</span> <span class="n">verts</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">int</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">idx</span><span class="p">,</span> <span class="n">values</span>
 
 
@@ -610,9 +692,18 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">cmd</span>
 
 
+<span class="k">def</span> <span class="nf">_check_datatype</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+    <span class="n">dtype</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">dtype</span>
+    <span class="k">if</span> <span class="n">dtype</span> <span class="o">==</span> <span class="n">np</span><span class="o">.</span><span class="n">int64</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">int32</span>
+    <span class="k">elif</span> <span class="n">dtype</span> <span class="o">==</span> <span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">float32</span>
+    <span class="k">else</span><span class="p">:</span>
+        <span class="k">return</span> <span class="n">dtype</span>
+
 
 <span class="k">def</span> <span class="nf">mri_surf2surf</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">source_subj</span><span class="p">,</span> <span class="n">target_subj</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">subjects_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Uses freesurfer mri_surf2surf to transfer vertex data between</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Uses freesurfer mri_surf2surf to transfer vertex data between</span>
 <span class="sd">        two freesurfer subjects</span>
 <span class="sd">    </span>
 <span class="sd">    Parameters</span>
@@ -633,7 +724,8 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
 <span class="sd">    =====</span>
 <span class="sd">    Requires path to mri_surf2surf or freesurfer environment to be active.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">data_arrays</span> <span class="o">=</span> <span class="p">[</span><span class="n">gifti</span><span class="o">.</span><span class="n">GiftiDataArray</span><span class="p">(</span><span class="n">d</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">]</span>
+    <span class="n">datatype</span> <span class="o">=</span> <span class="n">_check_datatype</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+    <span class="n">data_arrays</span> <span class="o">=</span> <span class="p">[</span><span class="n">gifti</span><span class="o">.</span><span class="n">GiftiDataArray</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="n">datatype</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">]</span>
     <span class="n">gifti_image</span> <span class="o">=</span> <span class="n">gifti</span><span class="o">.</span><span class="n">GiftiImage</span><span class="p">(</span><span class="n">darrays</span><span class="o">=</span><span class="n">data_arrays</span><span class="p">)</span>
 
     <span class="n">tf_in</span> <span class="o">=</span> <span class="n">NamedTemporaryFile</span><span class="p">(</span><span class="n">suffix</span><span class="o">=</span><span class="s2">&quot;.gii&quot;</span><span class="p">)</span>
@@ -678,7 +770,7 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
                             <span class="n">n_test_images</span><span class="o">=</span><span class="mi">40</span><span class="p">,</span> <span class="n">coef_threshold</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                             <span class="n">renormalize</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
 
-    <span class="sd">&quot;&quot;&quot;Creates a matrix implementing freesurfer mri_surf2surf command.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Creates a matrix implementing freesurfer mri_surf2surf command.</span>
 <span class="sd">    </span>
 <span class="sd">    A surface-to-surface transform is a linear transform between vertex spaces.</span>
 <span class="sd">    Such a transform must be highly localized in the sense that a vertex in the</span>
@@ -796,8 +888,10 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">matrix</span>
 
 
-<div class="viewcode-block" id="get_curv"><a class="viewcode-back" href="../../generated/cortex.freesurfer.get_curv.html#cortex.freesurfer.get_curv">[docs]</a><span class="k">def</span> <span class="nf">get_curv</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;wm&#39;</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Load freesurfer curv file for a freesurfer subject</span>
+<div class="viewcode-block" id="get_curv">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.get_curv.html#cortex.freesurfer.get_curv">[docs]</a>
+<span class="k">def</span> <span class="nf">get_curv</span><span class="p">(</span><span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;wm&#39;</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Load freesurfer curv file for a freesurfer subject</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -819,8 +913,11 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">parse_curv</span><span class="p">(</span><span class="n">curv_file</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="show_surf"><a class="viewcode-back" href="../../generated/cortex.freesurfer.show_surf.html#cortex.freesurfer.show_surf">[docs]</a><span class="k">def</span> <span class="nf">show_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">patch</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">curv</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Show a surface from a Freesurfer subject directory</span>
+
+<div class="viewcode-block" id="show_surf">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.show_surf.html#cortex.freesurfer.show_surf">[docs]</a>
+<span class="k">def</span> <span class="nf">show_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="nb">type</span><span class="p">,</span> <span class="n">patch</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">curv</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Show a surface from a Freesurfer subject directory</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -877,8 +974,11 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="n">mlab</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
     <span class="k">return</span> <span class="n">fig</span><span class="p">,</span> <span class="n">surf</span></div>
 
-<div class="viewcode-block" id="write_dot"><a class="viewcode-back" href="../../generated/cortex.freesurfer.write_dot.html#cortex.freesurfer.write_dot">[docs]</a><span class="k">def</span> <span class="nf">write_dot</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s2">&quot;test&quot;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="write_dot">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.write_dot.html#cortex.freesurfer.write_dot">[docs]</a>
+<span class="k">def</span> <span class="nf">write_dot</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s2">&quot;test&quot;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
     <span class="k">def</span> <span class="nf">iter_surfedges</span><span class="p">(</span><span class="n">tris</span><span class="p">):</span>
@@ -900,8 +1000,11 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">&quot;}&quot;</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="read_dot"><a class="viewcode-back" href="../../generated/cortex.freesurfer.read_dot.html#cortex.freesurfer.read_dot">[docs]</a><span class="k">def</span> <span class="nf">read_dot</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">pts</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="read_dot">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.read_dot.html#cortex.freesurfer.read_dot">[docs]</a>
+<span class="k">def</span> <span class="nf">read_dot</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">pts</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">import</span> <span class="nn">re</span>
     <span class="n">parse</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">compile</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\s(\d+)\s\[label=&quot;&quot;, pos=&quot;([\d\.]+),([\d\.]+)&quot;.*];&#39;</span><span class="p">)</span>
@@ -919,10 +1022,13 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">data</span></div>
 
 
-<div class="viewcode-block" id="write_decimated"><a class="viewcode-back" href="../../generated/cortex.freesurfer.write_decimated.html#cortex.freesurfer.write_decimated">[docs]</a><span class="k">def</span> <span class="nf">write_decimated</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="write_decimated">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.write_decimated.html#cortex.freesurfer.write_decimated">[docs]</a>
+<span class="k">def</span> <span class="nf">write_decimated</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="kn">from</span> <span class="nn">.polyutils</span> <span class="kn">import</span> <span class="n">decimate</span><span class="p">,</span> <span class="n">boundary_edges</span>
+    <span class="kn">from</span> <span class="nn">.polyutils</span> <span class="kn">import</span> <span class="n">boundary_edges</span><span class="p">,</span> <span class="n">decimate</span>
     <span class="n">dpts</span><span class="p">,</span> <span class="n">dpolys</span> <span class="o">=</span> <span class="n">decimate</span><span class="p">(</span><span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">)</span>
     <span class="n">write_surf</span><span class="p">(</span><span class="n">path</span><span class="o">+</span><span class="s1">&#39;.smoothwm&#39;</span><span class="p">,</span> <span class="n">dpts</span><span class="p">,</span> <span class="n">dpolys</span><span class="p">)</span>
     <span class="n">edges</span> <span class="o">=</span> <span class="n">boundary_edges</span><span class="p">(</span><span class="n">dpolys</span><span class="p">)</span>
@@ -938,10 +1044,15 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">tostring</span><span class="p">())</span></div>
 
 
-<div class="viewcode-block" id="SpringLayout"><a class="viewcode-back" href="../../generated/cortex.freesurfer.SpringLayout.html#cortex.freesurfer.SpringLayout">[docs]</a><span class="k">class</span> <span class="nc">SpringLayout</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="SpringLayout">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.SpringLayout.html#cortex.freesurfer.SpringLayout">[docs]</a>
+<span class="k">class</span> <span class="nc">SpringLayout</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-<div class="viewcode-block" id="SpringLayout.__init__"><a class="viewcode-back" href="../../generated/cortex.freesurfer.SpringLayout.html#cortex.freesurfer.SpringLayout.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">dpts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pins</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">stepsize</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">neighborhood</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
+<div class="viewcode-block" id="SpringLayout.__init__">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.SpringLayout.html#cortex.freesurfer.SpringLayout.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">dpts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pins</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">stepsize</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">neighborhood</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">pts</span> <span class="o">=</span> <span class="n">pts</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">polys</span> <span class="o">=</span> <span class="n">polys</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">stepsize</span> <span class="o">=</span> <span class="n">stepsize</span>
@@ -992,6 +1103,7 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">_neigh</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">hstack</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">neighbors</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">uint</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">figure</span> <span class="o">=</span> <span class="kc">None</span></div>
 
+
     <span class="k">def</span> <span class="nf">_spring</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="n">svec</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">_neigh</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">_idx</span><span class="p">]</span>
         <span class="n">slen</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">svec</span><span class="o">**</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">))</span>
@@ -1027,8 +1139,11 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">()</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">figure</span><span class="o">.</span><span class="n">mlab_source</span><span class="o">.</span><span class="n">set</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">[:,</span><span class="mi">0</span><span class="p">],</span> <span class="n">y</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">[:,</span><span class="mi">1</span><span class="p">],</span> <span class="n">z</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">[:,</span><span class="mi">2</span><span class="p">])</span></div>
 
-<div class="viewcode-block" id="stretch_mwall"><a class="viewcode-back" href="../../generated/cortex.freesurfer.stretch_mwall.html#cortex.freesurfer.stretch_mwall">[docs]</a><span class="k">def</span> <span class="nf">stretch_mwall</span><span class="p">(</span><span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">mwall</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="stretch_mwall">
+<a class="viewcode-back" href="../../generated/cortex.freesurfer.stretch_mwall.html#cortex.freesurfer.stretch_mwall">[docs]</a>
+<span class="k">def</span> <span class="nf">stretch_mwall</span><span class="p">(</span><span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">mwall</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="n">inflated</span> <span class="o">=</span> <span class="n">pts</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
     <span class="n">center</span> <span class="o">=</span> <span class="n">pts</span><span class="p">[</span><span class="n">mwall</span><span class="p">]</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
@@ -1039,6 +1154,87 @@ <h1>Source code for cortex.freesurfer</h1><div class="highlight"><pre>
     <span class="n">pts</span><span class="p">[</span><span class="n">mwall</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="n">radius</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">)</span> <span class="o">+</span> <span class="n">center</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
     <span class="k">return</span> <span class="n">SpringLayout</span><span class="p">(</span><span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">,</span> <span class="n">inflated</span><span class="p">,</span> <span class="n">pins</span><span class="o">=</span><span class="n">mwall</span><span class="p">)</span></div>
 
+
+
+<span class="k">def</span> <span class="nf">upsample_to_fsaverage</span><span class="p">(</span>
+        <span class="n">data</span><span class="p">,</span> <span class="n">data_space</span><span class="o">=</span><span class="s2">&quot;fsaverage6&quot;</span><span class="p">,</span> <span class="n">freesurfer_subjects_dir</span><span class="o">=</span><span class="kc">None</span>
+<span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Project data from fsaverage6 (or other fsaverage surface) to fsaverage to</span>
+<span class="sd">    visualize it in pycortex.</span>
+
+<span class="sd">    Parameters</span>
+<span class="sd">    ----------</span>
+<span class="sd">    data : array (n_samples, n_vertices)</span>
+<span class="sd">        Data in space `space`. The first n_vertices/2 vertices correspond to the left</span>
+<span class="sd">        hemisphere, and the last n_vertices/2 vertices correspond to the right</span>
+<span class="sd">        hemisphere.</span>
+<span class="sd">    data_space : str</span>
+<span class="sd">        One of fsaverage[1-6], corresponding to the source template space of `data`.</span>
+<span class="sd">    freesurfer_subjects_dir : str or None</span>
+<span class="sd">        Path to Freesurfer subjects directory. If None, defaults to the value of the</span>
+<span class="sd">        environment variable $SUBJECTS_DIR.</span>
+
+<span class="sd">    Returns</span>
+<span class="sd">    -------</span>
+<span class="sd">    projected_data : array (n_samples, 327684)</span>
+<span class="sd">        Data projected to fsaverage(7).</span>
+
+<span class="sd">    Notes</span>
+<span class="sd">    -----</span>
+<span class="sd">    Data in the lower resolution fsaverage template is upsampled to the full resolution</span>
+<span class="sd">    fsaverage template by nearest-neighbor interpolation. To project the data from a </span>
+<span class="sd">    lower resolution version of fsaverage, this code exploits the structure of fsaverage </span>
+<span class="sd">    surfaces. (That is, each hemisphere in fsaverage6 corresponds to the first </span>
+<span class="sd">    40,962 vertices of fsaverage; fsaverage5 corresponds to the first 10,242 vertices of </span>
+<span class="sd">    fsaverage, etc.)</span>
+<span class="sd">    &quot;&quot;&quot;</span>
+
+
+    <span class="k">def</span> <span class="nf">get_n_vertices_ico</span><span class="p">(</span><span class="n">icoorder</span><span class="p">):</span>
+        <span class="k">return</span> <span class="mi">4</span> <span class="o">**</span> <span class="n">icoorder</span> <span class="o">*</span> <span class="mi">10</span> <span class="o">+</span> <span class="mi">2</span>
+
+    <span class="n">ico_order</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">data_space</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+    <span class="n">n_ico_vertices</span> <span class="o">=</span> <span class="n">get_n_vertices_ico</span><span class="p">(</span><span class="n">ico_order</span><span class="p">)</span>
+    <span class="n">ndim</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">ndim</span>
+    <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">atleast_2d</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+    <span class="n">_</span><span class="p">,</span> <span class="n">n_vertices</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">shape</span>
+    <span class="k">if</span> <span class="n">n_vertices</span> <span class="o">!=</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">n_ico_vertices</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="sa">f</span><span class="s2">&quot;data has </span><span class="si">{</span><span class="n">n_vertices</span><span class="si">}</span><span class="s2"> vertices, but </span><span class="si">{</span><span class="mi">2</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="n">n_ico_vertices</span><span class="si">}</span><span class="s2"> &quot;</span>
+            <span class="sa">f</span><span class="s2">&quot;are expected for both hemispheres in </span><span class="si">{</span><span class="n">data_space</span><span class="si">}</span><span class="s2">&quot;</span>
+        <span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">freesurfer_subjects_dir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="n">freesurfer_subjects_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;SUBJECTS_DIR&quot;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">freesurfer_subjects_dir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+            <span class="s2">&quot;freesurfer_subjects_dir must be specified or $SUBJECTS_DIR must be set&quot;</span>
+        <span class="p">)</span>
+    
+    <span class="n">data_hemi</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="n">axis</span><span class="o">=-</span><span class="mi">1</span><span class="p">)</span>
+    <span class="n">hemis</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;lh&quot;</span><span class="p">,</span> <span class="s2">&quot;rh&quot;</span><span class="p">]</span>
+    <span class="n">projected_data</span> <span class="o">=</span> <span class="p">[]</span>
+    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="p">(</span><span class="n">hemi</span><span class="p">,</span> <span class="n">dt</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">hemis</span><span class="p">,</span> <span class="n">data_hemi</span><span class="p">)):</span>
+        <span class="c1"># Load fsaverage sphere for this hemisphere</span>
+        <span class="n">pts</span><span class="p">,</span> <span class="n">faces</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">freesurfer</span><span class="o">.</span><span class="n">read_geometry</span><span class="p">(</span>
+            <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
+                <span class="n">freesurfer_subjects_dir</span><span class="p">,</span> <span class="s2">&quot;fsaverage&quot;</span><span class="p">,</span> <span class="s2">&quot;surf&quot;</span><span class="p">,</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">hemi</span><span class="si">}</span><span class="s2">.sphere.reg&quot;</span>
+            <span class="p">)</span>
+        <span class="p">)</span>
+        <span class="c1"># build kdtree using only vertices in reduced fsaverage surface</span>
+        <span class="n">kdtree</span> <span class="o">=</span> <span class="n">KDTree</span><span class="p">(</span><span class="n">pts</span><span class="p">[:</span><span class="n">n_ico_vertices</span><span class="p">])</span>
+        <span class="c1"># figure out neighbors in reduced version for all other vertices in fsaverage</span>
+        <span class="n">_</span><span class="p">,</span> <span class="n">neighbors</span> <span class="o">=</span> <span class="n">kdtree</span><span class="o">.</span><span class="n">query</span><span class="p">(</span><span class="n">pts</span><span class="p">[</span><span class="n">n_ico_vertices</span><span class="p">:],</span> <span class="n">k</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+        <span class="c1"># now simply fill remaining vertices with original values</span>
+        <span class="n">projected_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+            <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">dt</span><span class="p">,</span> <span class="n">dt</span><span class="p">[:,</span> <span class="n">neighbors</span><span class="p">]],</span> <span class="n">axis</span><span class="o">=-</span><span class="mi">1</span><span class="p">)</span>
+        <span class="p">)</span>
+    <span class="n">projected_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">hstack</span><span class="p">(</span><span class="n">projected_data</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+        <span class="n">projected_data</span> <span class="o">=</span> <span class="n">projected_data</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+    <span class="k">return</span> <span class="n">projected_data</span>
+
+
 <span class="c1"># aseg partition labels (up to 256 only)</span>
 <span class="n">fs_aseg_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;Unknown&#39;</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
                 <span class="s1">&#39;Left-Cerebral-Exterior&#39;</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>
@@ -1293,7 +1489,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -1301,8 +1497,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -1316,11 +1512,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/mapper.html b/_modules/cortex/mapper.html
index 58fbc6207..c1aa48a18 100644
--- a/_modules/cortex/mapper.html
+++ b/_modules/cortex/mapper.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.mapper &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.mapper &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -43,7 +42,9 @@ <h1>Source code for cortex.mapper</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">.mapper</span> <span class="kn">import</span> <span class="n">Mapper</span><span class="p">,</span> <span class="n">_savecache</span>
 
 
-<div class="viewcode-block" id="get_mapper"><a class="viewcode-back" href="../../generated/cortex.mapper.get_mapper.html#cortex.mapper.get_mapper">[docs]</a><span class="k">def</span> <span class="nf">get_mapper</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<div class="viewcode-block" id="get_mapper">
+<a class="viewcode-back" href="../../generated/cortex.mapper.get_mapper.html#cortex.mapper.get_mapper">[docs]</a>
+<span class="k">def</span> <span class="nf">get_mapper</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
     <span class="kn">from</span> <span class="nn">..database</span> <span class="kn">import</span> <span class="n">db</span>
     <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">point</span><span class="p">,</span> <span class="n">patch</span><span class="p">,</span> <span class="n">line</span>
 
@@ -75,6 +76,7 @@ <h1>Source code for cortex.mapper</h1><div class="highlight"><pre>
         <span class="k">raise</span> <span class="ne">Exception</span>
     <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
         <span class="k">return</span> <span class="n">Map</span><span class="o">.</span><span class="n">_cache</span><span class="p">(</span><span class="n">cachefile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span></div>
+
 </pre></div>
 
           </div>
@@ -125,7 +127,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -133,8 +135,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -148,11 +150,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/mapper/mapper.html b/_modules/cortex/mapper/mapper.html
index 0a03cc9c7..99ce92bdd 100644
--- a/_modules/cortex/mapper/mapper.html
+++ b/_modules/cortex/mapper/mapper.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.mapper.mapper &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
-    <script src="../../../_static/jquery.js"></script>
-    <script src="../../../_static/underscore.js"></script>
-    <script src="../../../_static/doctools.js"></script>
+    <title>cortex.mapper.mapper &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
    
   <link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -43,9 +42,13 @@ <h1>Source code for cortex.mapper.mapper</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">warnings</span>
 <span class="n">warnings</span><span class="o">.</span><span class="n">simplefilter</span><span class="p">(</span><span class="s1">&#39;ignore&#39;</span><span class="p">,</span> <span class="n">sparse</span><span class="o">.</span><span class="n">SparseEfficiencyWarning</span><span class="p">)</span>
 
-<div class="viewcode-block" id="Mapper"><a class="viewcode-back" href="../../../generated/cortex.mapper.Mapper.html#cortex.mapper.Mapper">[docs]</a><span class="k">class</span> <span class="nc">Mapper</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;Maps data from epi volume onto surface using various projections&#39;&#39;&#39;</span>
-<div class="viewcode-block" id="Mapper.__init__"><a class="viewcode-back" href="../../../generated/cortex.mapper.Mapper.html#cortex.mapper.Mapper.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">left</span><span class="p">,</span> <span class="n">right</span><span class="p">,</span> <span class="n">shape</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">):</span>
+<div class="viewcode-block" id="Mapper">
+<a class="viewcode-back" href="../../../generated/cortex.mapper.Mapper.html#cortex.mapper.Mapper">[docs]</a>
+<span class="k">class</span> <span class="nc">Mapper</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&#39;&#39;&#39;Maps data from epi volume onto surface using various projections&#39;&#39;&#39;</span>
+<div class="viewcode-block" id="Mapper.__init__">
+<a class="viewcode-back" href="../../../generated/cortex.mapper.Mapper.html#cortex.mapper.Mapper.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">left</span><span class="p">,</span> <span class="n">right</span><span class="p">,</span> <span class="n">shape</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">idxmap</span> <span class="o">=</span> <span class="kc">None</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">masks</span> <span class="o">=</span> <span class="p">[</span><span class="n">left</span><span class="p">,</span> <span class="n">right</span><span class="p">]</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">nverts</span> <span class="o">=</span> <span class="n">left</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">right</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
@@ -53,6 +56,7 @@ <h1>Source code for cortex.mapper.mapper</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">subject</span> <span class="o">=</span> <span class="n">subject</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">xfmname</span> <span class="o">=</span> <span class="n">xfmname</span></div>
 
+
     <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_cache</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">cachefile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">):</span>
         <span class="n">npz</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">cachefile</span><span class="p">)</span>
@@ -109,7 +113,7 @@ <h1>Source code for cortex.mapper.mapper</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">dataset</span><span class="o">.</span><span class="n">Vertex</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">hstack</span><span class="p">(</span><span class="n">mapped</span><span class="p">)</span><span class="o">.</span><span class="n">squeeze</span><span class="p">(),</span> <span class="n">data</span><span class="o">.</span><span class="n">subject</span><span class="p">)</span>
 
     <span class="k">def</span> <span class="nf">backwards</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">vertexdata</span><span class="p">):</span>
-        <span class="sd">&#39;&#39;&#39;Projects vertex data back into volume space.</span>
+<span class="w">        </span><span class="sd">&#39;&#39;&#39;Projects vertex data back into volume space.</span>
 
 <span class="sd">        Parameters</span>
 <span class="sd">        ----------</span>
@@ -167,6 +171,7 @@ <h1>Source code for cortex.mapper.mapper</h1><div class="highlight"><pre>
         <span class="n">_savecache</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">masks</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">masks</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">xfm</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
         <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">masks</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">masks</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">xfm</span><span class="o">.</span><span class="n">shape</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span></div>
 
+
 <span class="k">def</span> <span class="nf">_savecache</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">left</span><span class="p">,</span> <span class="n">right</span><span class="p">,</span> <span class="n">shape</span><span class="p">):</span>
     <span class="n">np</span><span class="o">.</span><span class="n">savez</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span>
              <span class="n">left_data</span><span class="o">=</span><span class="n">left</span><span class="o">.</span><span class="n">data</span><span class="p">,</span>
@@ -230,7 +235,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -238,8 +243,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -253,11 +258,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/mni.html b/_modules/cortex/mni.html
index 042baa966..241e86b54 100644
--- a/_modules/cortex/mni.html
+++ b/_modules/cortex/mni.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.mni &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.mni &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -66,9 +65,11 @@ <h1>Source code for cortex.mni</h1><div class="highlight"><pre>
 <span class="k">def</span> <span class="nf">_load_fsl_xfm</span><span class="p">(</span><span class="n">filename</span><span class="p">):</span>
     <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">loadtxt</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
 
-<div class="viewcode-block" id="compute_mni_transform"><a class="viewcode-back" href="../../generated/cortex.mni.compute_mni_transform.html#cortex.mni.compute_mni_transform">[docs]</a><span class="k">def</span> <span class="nf">compute_mni_transform</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span>
+<div class="viewcode-block" id="compute_mni_transform">
+<a class="viewcode-back" href="../../generated/cortex.mni.compute_mni_transform.html#cortex.mni.compute_mni_transform">[docs]</a>
+<span class="k">def</span> <span class="nf">compute_mni_transform</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span>
                           <span class="n">template</span><span class="o">=</span><span class="n">default_template</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Compute transform from the space specified by `xfm` to MNI standard space.</span>
 
 <span class="sd">    Parameters</span>
@@ -110,9 +111,12 @@ <h1>Source code for cortex.mni</h1><div class="highlight"><pre>
 
     <span class="k">return</span> <span class="n">func_to_mni</span></div>
 
-<div class="viewcode-block" id="transform_to_mni"><a class="viewcode-back" href="../../generated/cortex.mni.transform_to_mni.html#cortex.mni.transform_to_mni">[docs]</a><span class="k">def</span> <span class="nf">transform_to_mni</span><span class="p">(</span><span class="n">volumedata</span><span class="p">,</span> <span class="n">func_to_mni</span><span class="p">,</span> 
+
+<div class="viewcode-block" id="transform_to_mni">
+<a class="viewcode-back" href="../../generated/cortex.mni.transform_to_mni.html#cortex.mni.transform_to_mni">[docs]</a>
+<span class="k">def</span> <span class="nf">transform_to_mni</span><span class="p">(</span><span class="n">volumedata</span><span class="p">,</span> <span class="n">func_to_mni</span><span class="p">,</span> 
                      <span class="n">template</span><span class="o">=</span><span class="n">default_template</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Transform data in `volumedata` to MNI space, resample at the resolution of </span>
 <span class="sd">    the atlas image.</span>
 
@@ -150,8 +154,11 @@ <h1>Source code for cortex.mni</h1><div class="highlight"><pre>
 
     <span class="k">return</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">func_in_mni</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="transform_surface_to_mni"><a class="viewcode-back" href="../../generated/cortex.mni.transform_surface_to_mni.html#cortex.mni.transform_surface_to_mni">[docs]</a><span class="k">def</span> <span class="nf">transform_surface_to_mni</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">surfname</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="transform_surface_to_mni">
+<a class="viewcode-back" href="../../generated/cortex.mni.transform_surface_to_mni.html#cortex.mni.transform_surface_to_mni">[docs]</a>
+<span class="k">def</span> <span class="nf">transform_surface_to_mni</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">surfname</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Transform the surface named `surfname` for subject called `subject` into</span>
 <span class="sd">    MNI coordinates. Returns [(lpts, lpolys), (rpts, rpolys)].</span>
 
@@ -168,7 +175,7 @@ <h1>Source code for cortex.mni</h1><div class="highlight"><pre>
 <span class="sd">        MNI-transformed surface in same format returned by db.get_surf.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="c1"># Get MNI affine transform</span>
-    <span class="n">mni_affine</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">default_template</span><span class="p">)</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()</span>
+    <span class="n">mni_affine</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">default_template</span><span class="p">)</span><span class="o">.</span><span class="n">affine</span>
 
     <span class="c1"># Get subject anatomical-to-MNI transform</span>
     <span class="n">mni_xfm</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">mni_affine</span><span class="p">,</span> <span class="n">db</span><span class="o">.</span><span class="n">get_mnixfm</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;identity&quot;</span><span class="p">))</span>
@@ -188,9 +195,12 @@ <h1>Source code for cortex.mni</h1><div class="highlight"><pre>
 
     <span class="k">return</span> <span class="p">[(</span><span class="n">mni_lpts</span><span class="p">,</span> <span class="n">lpolys</span><span class="p">),</span> <span class="p">(</span><span class="n">mni_rpts</span><span class="p">,</span> <span class="n">rpolys</span><span class="p">)]</span></div>
 
-<div class="viewcode-block" id="transform_mni_to_subject"><a class="viewcode-back" href="../../generated/cortex.mni.transform_mni_to_subject.html#cortex.mni.transform_mni_to_subject">[docs]</a><span class="k">def</span> <span class="nf">transform_mni_to_subject</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">volarray</span><span class="p">,</span> <span class="n">func_to_mni</span><span class="p">,</span>
+
+<div class="viewcode-block" id="transform_mni_to_subject">
+<a class="viewcode-back" href="../../generated/cortex.mni.transform_mni_to_subject.html#cortex.mni.transform_mni_to_subject">[docs]</a>
+<span class="k">def</span> <span class="nf">transform_mni_to_subject</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">volarray</span><span class="p">,</span> <span class="n">func_to_mni</span><span class="p">,</span>
                              <span class="n">template</span><span class="o">=</span><span class="n">default_template</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Transform data in `volarray` from MNI space to functional space specified by `xfm`.</span>
 
 <span class="sd">    Parameters</span>
@@ -220,7 +230,7 @@ <h1>Source code for cortex.mni</h1><div class="highlight"><pre>
     <span class="n">funcspace_nii</span> <span class="o">=</span> <span class="n">tempfile</span><span class="o">.</span><span class="n">mktemp</span><span class="p">(</span><span class="s2">&quot;.nii.gz&quot;</span><span class="p">)</span>
 
     <span class="c1"># Save out relevant things</span>
-    <span class="n">affine</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">template</span><span class="p">)</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()</span>
+    <span class="n">affine</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">template</span><span class="p">)</span><span class="o">.</span><span class="n">affine</span>
     <span class="n">nibabel</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">volarray</span><span class="p">,</span> <span class="n">affine</span><span class="p">),</span> <span class="n">mnispace_func_nii</span><span class="p">)</span>
     <span class="n">_save_fsl_xfm</span><span class="p">(</span><span class="n">mni_to_func_xfm</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">func_to_mni</span><span class="p">))</span>
 
@@ -234,6 +244,7 @@ <h1>Source code for cortex.mni</h1><div class="highlight"><pre>
                      <span class="s2">&quot;-out&quot;</span><span class="p">,</span> <span class="n">funcspace_nii</span><span class="p">])</span>
 
     <span class="k">return</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">funcspace_nii</span><span class="p">)</span></div>
+
 </pre></div>
 
           </div>
@@ -284,7 +295,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -292,8 +303,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -307,11 +318,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/polyutils/distortion.html b/_modules/cortex/polyutils/distortion.html
index 295af4d4c..3251ea617 100644
--- a/_modules/cortex/polyutils/distortion.html
+++ b/_modules/cortex/polyutils/distortion.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.polyutils.distortion &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
-    <script src="../../../_static/jquery.js"></script>
-    <script src="../../../_static/underscore.js"></script>
-    <script src="../../../_static/doctools.js"></script>
+    <title>cortex.polyutils.distortion &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
    
   <link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,8 +38,10 @@ <h1>Source code for cortex.polyutils.distortion</h1><div class="highlight"><pre>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
 
-<div class="viewcode-block" id="Distortion"><a class="viewcode-back" href="../../../generated/cortex.polyutils.Distortion.html#cortex.polyutils.Distortion">[docs]</a><span class="k">class</span> <span class="nc">Distortion</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Used to compute distortion metrics between fiducial and another (e.g. flat)</span>
+<div class="viewcode-block" id="Distortion">
+<a class="viewcode-back" href="../../../generated/cortex.polyutils.Distortion.html#cortex.polyutils.Distortion">[docs]</a>
+<span class="k">class</span> <span class="nc">Distortion</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Used to compute distortion metrics between fiducial and another (e.g. flat)</span>
 <span class="sd">    surface.</span>
 
 <span class="sd">    Parameters</span>
@@ -52,14 +53,17 @@ <h1>Source code for cortex.polyutils.distortion</h1><div class="highlight"><pre>
 <span class="sd">    polys : 2D ndarray, shape (total_polys, 3)</span>
 <span class="sd">        Triangle vertex indices in both `flat` and `ref`.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-<div class="viewcode-block" id="Distortion.__init__"><a class="viewcode-back" href="../../../generated/Distortion/cortex.polyutils.Distortion.__init__.html#cortex.polyutils.Distortion.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">flat</span><span class="p">,</span> <span class="n">ref</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
+<div class="viewcode-block" id="Distortion.__init__">
+<a class="viewcode-back" href="../../../generated/Distortion/cortex.polyutils.Distortion.__init__.html#cortex.polyutils.Distortion.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">flat</span><span class="p">,</span> <span class="n">ref</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">flat</span> <span class="o">=</span> <span class="n">flat</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">ref</span> <span class="o">=</span> <span class="n">ref</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">polys</span> <span class="o">=</span> <span class="n">polys</span></div>
 
+
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">areal</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Compute areal distortion of the flatmap.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Compute areal distortion of the flatmap.</span>
 
 <span class="sd">        Areal distortion is calculated at each triangle as the log2 ratio of</span>
 <span class="sd">        the triangle area in the flatmap to the area in the reference surface.</span>
@@ -98,7 +102,7 @@ <h1>Source code for cortex.polyutils.distortion</h1><div class="highlight"><pre>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">metric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Compute metric distortion of the flatmap.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Compute metric distortion of the flatmap.</span>
 
 <span class="sd">        Metric distortion is calculated as the difference in squared distance</span>
 <span class="sd">        from each vertex to its neighbors between the flatmap and the reference.</span>
@@ -136,6 +140,7 @@ <h1>Source code for cortex.polyutils.distortion</h1><div class="highlight"><pre>
         <span class="n">alldists</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ref</span><span class="p">),))</span>
         <span class="n">alldists</span><span class="p">[</span><span class="n">selverts</span><span class="p">]</span> <span class="o">=</span> <span class="n">msdists</span>
         <span class="k">return</span> <span class="n">alldists</span></div>
+
 </pre></div>
 
           </div>
@@ -186,7 +191,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -194,8 +199,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -209,11 +214,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/polyutils/surface.html b/_modules/cortex/polyutils/surface.html
index d12a0148a..6e44cd74f 100644
--- a/_modules/cortex/polyutils/surface.html
+++ b/_modules/cortex/polyutils/surface.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.polyutils.surface &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
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+    <title>cortex.polyutils.surface &#8212; pycortex 1.2.8 documentation</title>
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@@ -50,8 +49,10 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">.misc</span> <span class="kn">import</span> <span class="n">_memo</span>
 
 
-<div class="viewcode-block" id="Surface"><a class="viewcode-back" href="../../../generated/cortex.polyutils.Surface.html#cortex.polyutils.Surface">[docs]</a><span class="k">class</span> <span class="nc">Surface</span><span class="p">(</span><span class="n">exact_geodesic</span><span class="o">.</span><span class="n">ExactGeodesicMixin</span><span class="p">,</span> <span class="n">subsurface</span><span class="o">.</span><span class="n">SubsurfaceMixin</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Represents a single cortical hemisphere surface. Can be the white matter surface,</span>
+<div class="viewcode-block" id="Surface">
+<a class="viewcode-back" href="../../../generated/cortex.polyutils.Surface.html#cortex.polyutils.Surface">[docs]</a>
+<span class="k">class</span> <span class="nc">Surface</span><span class="p">(</span><span class="n">exact_geodesic</span><span class="o">.</span><span class="n">ExactGeodesicMixin</span><span class="p">,</span> <span class="n">subsurface</span><span class="o">.</span><span class="n">SubsurfaceMixin</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Represents a single cortical hemisphere surface. Can be the white matter surface,</span>
 <span class="sd">    pial surface, fiducial (mid-cortical) surface, inflated surface, flattened surface,</span>
 <span class="sd">    etc.</span>
 
@@ -64,7 +65,9 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 <span class="sd">    polys : 2D ndarray, shape (total_polys, 3)</span>
 <span class="sd">        Indices of the vertices in each triangle in the surface.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-<div class="viewcode-block" id="Surface.__init__"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.__init__.html#cortex.polyutils.Surface.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
+<div class="viewcode-block" id="Surface.__init__">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.__init__.html#cortex.polyutils.Surface.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">pts</span> <span class="o">=</span> <span class="n">pts</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">double</span><span class="p">)</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">polys</span> <span class="o">=</span> <span class="n">polys</span>
 
@@ -72,17 +75,18 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         <span class="bp">self</span><span class="o">.</span><span class="n">_rlfac_solvers</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">_nLC_solvers</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span></div>
 
+
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">ppts</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;3D matrix of points in each face: n faces x 3 points per face x 3 coords per point.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;3D matrix of points in each face: n faces x 3 points per face x 3 coords per point.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">polys</span><span class="p">]</span>
     
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">connected</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Sparse matrix of vertex-face associations.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Sparse matrix of vertex-face associations.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">npt</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">)</span>
         <span class="n">npoly</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">polys</span><span class="p">)</span>
@@ -93,7 +97,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">adj</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Sparse vertex adjacency matrix.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Sparse vertex adjacency matrix.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">npt</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">)</span>
         <span class="n">npoly</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">polys</span><span class="p">)</span>
@@ -109,7 +113,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">face_normals</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Normal vector for each face.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Normal vector for each face.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># Compute normal vector direction</span>
         <span class="n">nnfnorms</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cross</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ppts</span><span class="p">[:,</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">ppts</span><span class="p">[:,</span><span class="mi">0</span><span class="p">],</span> 
@@ -122,7 +126,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">vertex_normals</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Normal vector for each vertex (average of normals for neighboring faces).</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Normal vector for each vertex (average of normals for neighboring faces).</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># Average adjacent face normals</span>
         <span class="n">nnvnorms</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan_to_num</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">connected</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">face_normals</span><span class="p">)</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">connected</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span><span class="o">.</span><span class="n">A</span>
@@ -132,7 +136,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">face_areas</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Area of each face.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Area of each face.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># Compute normal vector (length is face area)</span>
         <span class="n">nnfnorms</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cross</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ppts</span><span class="p">[:,</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">ppts</span><span class="p">[:,</span><span class="mi">0</span><span class="p">],</span> 
@@ -143,7 +147,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">cotangent_weights</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Cotangent of angle opposite each vertex in each face.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Cotangent of angle opposite each vertex in each face.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">ppts</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">ppts</span>
         <span class="n">cots1</span> <span class="o">=</span> <span class="p">((</span><span class="n">ppts</span><span class="p">[:,</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="n">ppts</span><span class="p">[:,</span><span class="mi">0</span><span class="p">])</span> <span class="o">*</span>
@@ -165,7 +169,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">laplace_operator</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Laplace-Beltrami operator for this surface. A sparse adjacency matrix with</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Laplace-Beltrami operator for this surface. A sparse adjacency matrix with</span>
 <span class="sd">        edge weights determined by the cotangents of the angles opposite each edge.</span>
 <span class="sd">        Returns a 4-tuple (B,D,W,V) where D is the &#39;lumped mass matrix&#39;, W is the weighted</span>
 <span class="sd">        adjacency matrix, and V is a diagonal matrix that normalizes the adjacencies.</span>
@@ -205,8 +209,10 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         <span class="n">B</span> <span class="o">=</span> <span class="p">(</span><span class="n">Be1</span> <span class="o">+</span> <span class="n">Be1</span><span class="o">.</span><span class="n">T</span> <span class="o">+</span> <span class="n">Be2</span> <span class="o">+</span> <span class="n">Be2</span><span class="o">.</span><span class="n">T</span> <span class="o">+</span> <span class="n">Be3</span> <span class="o">+</span> <span class="n">Be3</span><span class="o">.</span><span class="n">T</span><span class="p">)</span><span class="o">/</span><span class="mi">12</span> <span class="o">+</span> <span class="n">dBd</span>
         <span class="k">return</span> <span class="n">B</span><span class="p">,</span> <span class="n">D</span><span class="p">,</span> <span class="n">W</span><span class="p">,</span> <span class="n">V</span>
 
-<div class="viewcode-block" id="Surface.mean_curvature"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.mean_curvature.html#cortex.polyutils.Surface.mean_curvature">[docs]</a>    <span class="k">def</span> <span class="nf">mean_curvature</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Compute mean curvature of this surface using the Laplace-Beltrami operator.</span>
+<div class="viewcode-block" id="Surface.mean_curvature">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.mean_curvature.html#cortex.polyutils.Surface.mean_curvature">[docs]</a>
+    <span class="k">def</span> <span class="nf">mean_curvature</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Compute mean curvature of this surface using the Laplace-Beltrami operator.</span>
 <span class="sd">        Curvature is computed at each vertex. It&#39;s probably pretty noisy, and should</span>
 <span class="sd">        be smoothed using smooth().</span>
 
@@ -226,8 +232,11 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         <span class="n">curv</span> <span class="o">=</span> <span class="p">(</span><span class="n">L</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">)</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">vertex_normals</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">curv</span></div>
 
-<div class="viewcode-block" id="Surface.smooth"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.smooth.html#cortex.polyutils.Surface.smooth">[docs]</a>    <span class="k">def</span> <span class="nf">smooth</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">scalars</span><span class="p">,</span> <span class="n">factor</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">iterations</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Smooth vertex-wise function given by `scalars` across the surface using</span>
+
+<div class="viewcode-block" id="Surface.smooth">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.smooth.html#cortex.polyutils.Surface.smooth">[docs]</a>
+    <span class="k">def</span> <span class="nf">smooth</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">scalars</span><span class="p">,</span> <span class="n">factor</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">iterations</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Smooth vertex-wise function given by `scalars` across the surface using</span>
 <span class="sd">        mean curvature flow method (see http://brickisland.net/cs177fa12/?p=302).</span>
 
 <span class="sd">        Amount of smoothing is controlled by `factor`.</span>
@@ -262,19 +271,22 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         <span class="n">smscalars</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">scalars</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
         <span class="n">smscalars</span><span class="p">[</span><span class="n">goodrows</span><span class="p">]</span> <span class="o">=</span> <span class="n">from_smooth</span>
         <span class="k">return</span> <span class="n">smscalars</span></div>
+
         
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">avg_edge_length</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Average length of all edges in the surface.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Average length of all edges in the surface.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">adj</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">adj</span>
         <span class="n">tadj</span> <span class="o">=</span> <span class="n">sparse</span><span class="o">.</span><span class="n">triu</span><span class="p">(</span><span class="n">adj</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> <span class="c1"># only entries above main diagonal, in coo format</span>
         <span class="n">edgelens</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(((</span><span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">[</span><span class="n">tadj</span><span class="o">.</span><span class="n">row</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">[</span><span class="n">tadj</span><span class="o">.</span><span class="n">col</span><span class="p">])</span><span class="o">**</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
         <span class="k">return</span> <span class="n">edgelens</span><span class="o">.</span><span class="n">mean</span><span class="p">()</span>
 
-<div class="viewcode-block" id="Surface.surface_gradient"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.surface_gradient.html#cortex.polyutils.Surface.surface_gradient">[docs]</a>    <span class="k">def</span> <span class="nf">surface_gradient</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">scalars</span><span class="p">,</span> <span class="n">at_verts</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Gradient of a function with values `scalars` at each vertex on the surface.</span>
+<div class="viewcode-block" id="Surface.surface_gradient">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.surface_gradient.html#cortex.polyutils.Surface.surface_gradient">[docs]</a>
+    <span class="k">def</span> <span class="nf">surface_gradient</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">scalars</span><span class="p">,</span> <span class="n">at_verts</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Gradient of a function with values `scalars` at each vertex on the surface.</span>
 <span class="sd">        If `at_verts`, returns values at each vertex. Otherwise, returns values at each</span>
 <span class="sd">        face.</span>
 
@@ -284,7 +296,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 <span class="sd">            A scalar-valued function across the cortex.</span>
 <span class="sd">        at_verts : bool, optional</span>
 <span class="sd">            If True (default), values will be returned for each vertex. Otherwise,</span>
-<span class="sd">            values will be retruned for each face.</span>
+<span class="sd">            values will be returned for each face.</span>
 
 <span class="sd">        Returns</span>
 <span class="sd">        -------</span>
@@ -307,8 +319,11 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
             <span class="k">return</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">connected</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">gradu</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">connected</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span><span class="o">.</span><span class="n">A</span><span class="o">.</span><span class="n">squeeze</span><span class="p">())</span><span class="o">.</span><span class="n">T</span>
         <span class="k">return</span> <span class="n">gradu</span></div>
 
-<div class="viewcode-block" id="Surface.create_biharmonic_solver"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.create_biharmonic_solver.html#cortex.polyutils.Surface.create_biharmonic_solver">[docs]</a>    <span class="k">def</span> <span class="nf">create_biharmonic_solver</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">boundary_verts</span><span class="p">,</span> <span class="n">clip_D</span><span class="o">=</span><span class="mf">0.1</span><span class="p">):</span>
-        <span class="sa">r</span><span class="sd">&quot;&quot;&quot;Set up biharmonic equation with Dirichlet boundary conditions on the cortical</span>
+
+<div class="viewcode-block" id="Surface.create_biharmonic_solver">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.create_biharmonic_solver.html#cortex.polyutils.Surface.create_biharmonic_solver">[docs]</a>
+    <span class="k">def</span> <span class="nf">create_biharmonic_solver</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">boundary_verts</span><span class="p">,</span> <span class="n">clip_D</span><span class="o">=</span><span class="mf">0.1</span><span class="p">):</span>
+<span class="w">        </span><span class="sa">r</span><span class="sd">&quot;&quot;&quot;Set up biharmonic equation with Dirichlet boundary conditions on the cortical</span>
 <span class="sd">        mesh and precompute Cholesky factorization for solving it. The vertices listed in</span>
 <span class="sd">        `boundary_verts` are considered part of the boundary, and will not be included in</span>
 <span class="sd">        the factorization.</span>
@@ -369,8 +384,9 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         
         <span class="k">return</span> <span class="n">lhs</span><span class="p">,</span> <span class="n">D</span><span class="p">,</span> <span class="n">Dinv</span><span class="p">,</span> <span class="n">lhsfac</span><span class="p">,</span> <span class="n">notboundary</span></div>
 
+
     <span class="k">def</span> <span class="nf">_create_interp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">verts</span><span class="p">,</span> <span class="n">bhsolver</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Creates interpolator that will interpolate values at the given `verts` using</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Creates interpolator that will interpolate values at the given `verts` using</span>
 <span class="sd">        biharmonic interpolation.</span>
 
 <span class="sd">        Parameters</span>
@@ -395,7 +411,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         
         <span class="n">npt</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">D</span><span class="p">)</span>
         <span class="k">def</span> <span class="nf">_interp</span><span class="p">(</span><span class="n">vals</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;Interpolate function with values `vals` at the knot points.&quot;&quot;&quot;</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Interpolate function with values `vals` at the knot points.&quot;&quot;&quot;</span>
             <span class="n">v2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">atleast_2d</span><span class="p">(</span><span class="n">vals</span><span class="p">)</span>
             <span class="n">nd</span><span class="p">,</span><span class="n">nv</span> <span class="o">=</span> <span class="n">v2</span><span class="o">.</span><span class="n">shape</span>
             <span class="n">ij</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="mi">2</span><span class="p">,</span><span class="n">nv</span><span class="o">*</span><span class="n">nd</span><span class="p">))</span>
@@ -418,8 +434,10 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">_interp</span>
 
-<div class="viewcode-block" id="Surface.interp"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.interp.html#cortex.polyutils.Surface.interp">[docs]</a>    <span class="k">def</span> <span class="nf">interp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">verts</span><span class="p">,</span> <span class="n">vals</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Interpolates a function between N knot points `verts` with the values `vals`.</span>
+<div class="viewcode-block" id="Surface.interp">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.interp.html#cortex.polyutils.Surface.interp">[docs]</a>
+    <span class="k">def</span> <span class="nf">interp</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">verts</span><span class="p">,</span> <span class="n">vals</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Interpolates a function between N knot points `verts` with the values `vals`.</span>
 <span class="sd">        `vals` can be a D x N array to interpolate multiple functions with the same</span>
 <span class="sd">        knot points.</span>
 
@@ -444,6 +462,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_create_interp</span><span class="p">(</span><span class="n">verts</span><span class="p">)(</span><span class="n">vals</span><span class="p">)</span></div>
 
+
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">_facenorm_cross_edge</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -454,8 +473,10 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         <span class="n">fe31</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cross</span><span class="p">(</span><span class="n">fnorms</span><span class="p">,</span> <span class="n">ppts</span><span class="p">[:,</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">ppts</span><span class="p">[:,</span><span class="mi">2</span><span class="p">])</span>
         <span class="k">return</span> <span class="n">fe12</span><span class="p">,</span> <span class="n">fe23</span><span class="p">,</span> <span class="n">fe31</span>
 
-<div class="viewcode-block" id="Surface.approx_geodesic_distance"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.approx_geodesic_distance.html#cortex.polyutils.Surface.approx_geodesic_distance">[docs]</a>    <span class="k">def</span> <span class="nf">approx_geodesic_distance</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">verts</span><span class="p">,</span> <span class="n">m</span><span class="o">=</span><span class="mf">0.1</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Computes approximate geodesic distance (in mm) from each vertex in </span>
+<div class="viewcode-block" id="Surface.approx_geodesic_distance">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.approx_geodesic_distance.html#cortex.polyutils.Surface.approx_geodesic_distance">[docs]</a>
+    <span class="k">def</span> <span class="nf">approx_geodesic_distance</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">verts</span><span class="p">,</span> <span class="n">m</span><span class="o">=</span><span class="mf">0.1</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Computes approximate geodesic distance (in mm) from each vertex in </span>
 <span class="sd">        the surface to any vertex in the collection `verts`. This approximation</span>
 <span class="sd">        is computed using Varadhan&#39;s formula for geodesic distance based on the</span>
 <span class="sd">        heat kernel. This is very fast (quite a bit faster than `geodesic_distance`)</span>
@@ -505,8 +526,11 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="o">-</span><span class="mi">4</span> <span class="o">*</span> <span class="n">t</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">u</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Surface.geodesic_distance"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.geodesic_distance.html#cortex.polyutils.Surface.geodesic_distance">[docs]</a>    <span class="k">def</span> <span class="nf">geodesic_distance</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">verts</span><span class="p">,</span> <span class="n">m</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">fem</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Minimum mesh geodesic distance (in mm) from each vertex in surface to any</span>
+
+<div class="viewcode-block" id="Surface.geodesic_distance">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.geodesic_distance.html#cortex.polyutils.Surface.geodesic_distance">[docs]</a>
+    <span class="k">def</span> <span class="nf">geodesic_distance</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">verts</span><span class="p">,</span> <span class="n">m</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">fem</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Minimum mesh geodesic distance (in mm) from each vertex in surface to any</span>
 <span class="sd">        vertex in the collection `verts`.</span>
 
 <span class="sd">        Geodesic distance is estimated using heat-based method (see &#39;Geodesics in Heat&#39;,</span>
@@ -603,8 +627,11 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">phi</span></div>
 
-<div class="viewcode-block" id="Surface.geodesic_path"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.geodesic_path.html#cortex.polyutils.Surface.geodesic_path">[docs]</a>    <span class="k">def</span> <span class="nf">geodesic_path</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">max_len</span><span class="o">=</span><span class="mi">1000</span><span class="p">,</span> <span class="n">d</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Finds the shortest path between two points `a` and `b`.</span>
+
+<div class="viewcode-block" id="Surface.geodesic_path">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.geodesic_path.html#cortex.polyutils.Surface.geodesic_path">[docs]</a>
+    <span class="k">def</span> <span class="nf">geodesic_path</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">a</span><span class="p">,</span> <span class="n">b</span><span class="p">,</span> <span class="n">max_len</span><span class="o">=</span><span class="mi">1000</span><span class="p">,</span> <span class="n">d</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Finds the shortest path between two points `a` and `b`.</span>
 
 <span class="sd">        This shortest path is based on geodesic distances across the surface.</span>
 <span class="sd">        The path starts at point `a` and selects the neighbor of `a` in the </span>
@@ -650,6 +677,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
                 <span class="k">return</span> <span class="n">path</span>
         <span class="k">return</span> <span class="n">path</span></div>
 
+
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">_cot_edge</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
@@ -677,7 +705,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">boundary_vertices</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;return mask of boundary vertices</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;return mask of boundary vertices</span>
 
 <span class="sd">        algorithm: for simple mesh, every edge appears in either 1 or 2 polys</span>
 <span class="sd">            1 -&gt; border edge</span>
@@ -724,7 +752,7 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 
     <span class="nd">@property</span>
     <span class="k">def</span> <span class="nf">iter_surfedges_weighted</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;iterate through edges</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;iterate through edges</span>
 
 <span class="sd">        - same iteration order as self.edge_lengths</span>
 <span class="sd">            - border edges will be iterated once, non-border edges will be iterated twice</span>
@@ -740,20 +768,23 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">graph</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;NetworkX undirected graph representing this Surface.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;NetworkX undirected graph representing this Surface.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
         <span class="n">graph</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">Graph</span><span class="p">()</span>
         <span class="n">graph</span><span class="o">.</span><span class="n">add_edges_from</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_surfedges</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">graph</span>
 
-<div class="viewcode-block" id="Surface.get_graph"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.get_graph.html#cortex.polyutils.Surface.get_graph">[docs]</a>    <span class="k">def</span> <span class="nf">get_graph</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+<div class="viewcode-block" id="Surface.get_graph">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.get_graph.html#cortex.polyutils.Surface.get_graph">[docs]</a>
+    <span class="k">def</span> <span class="nf">get_graph</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
         <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">graph</span></div>
 
+
     <span class="nd">@property</span>
     <span class="nd">@_memo</span>
     <span class="k">def</span> <span class="nf">edge_lengths</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;return vector of edge lengths</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;return vector of edge lengths</span>
 
 <span class="sd">        - same iteration order as iter_surfedges_listed()</span>
 <span class="sd">            - border edges will be iterated once, non-border edges will be iterated twice</span>
@@ -779,8 +810,10 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         <span class="n">weighted_graph</span><span class="o">.</span><span class="n">add_weighted_edges_from</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">iter_surfedges_weighted</span><span class="p">)</span>
         <span class="k">return</span> <span class="n">weighted_graph</span>
 
-<div class="viewcode-block" id="Surface.extract_chunk"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.extract_chunk.html#cortex.polyutils.Surface.extract_chunk">[docs]</a>    <span class="k">def</span> <span class="nf">extract_chunk</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nfaces</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="n">seed</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">auxpts</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&#39;&#39;&#39;Extract a chunk of the surface using breadth first search, for testing purposes&#39;&#39;&#39;</span>
+<div class="viewcode-block" id="Surface.extract_chunk">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.extract_chunk.html#cortex.polyutils.Surface.extract_chunk">[docs]</a>
+    <span class="k">def</span> <span class="nf">extract_chunk</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nfaces</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="n">seed</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">auxpts</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&#39;&#39;&#39;Extract a chunk of the surface using breadth first search, for testing purposes&#39;&#39;&#39;</span>
         <span class="n">node</span> <span class="o">=</span> <span class="n">seed</span>
         <span class="k">if</span> <span class="n">seed</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">node</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randint</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">pts</span><span class="p">))</span>
@@ -814,8 +847,11 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">pts</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">polys</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="Surface.extract_geodesic_chunk"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.extract_geodesic_chunk.html#cortex.polyutils.Surface.extract_geodesic_chunk">[docs]</a>    <span class="k">def</span> <span class="nf">extract_geodesic_chunk</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">radius</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Extract a chunk of the surface that is within radius of the origin by</span>
+
+<div class="viewcode-block" id="Surface.extract_geodesic_chunk">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.extract_geodesic_chunk.html#cortex.polyutils.Surface.extract_geodesic_chunk">[docs]</a>
+    <span class="k">def</span> <span class="nf">extract_geodesic_chunk</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">radius</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Extract a chunk of the surface that is within radius of the origin by</span>
 <span class="sd">        geodesic distance.</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">dist</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">geodesic_distance</span><span class="p">([</span><span class="n">origin</span><span class="p">])</span>
@@ -837,8 +873,11 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">sel_pts</span><span class="p">,</span> <span class="n">sel_polys</span></div>
 
 
-<div class="viewcode-block" id="Surface.polyhedra"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.polyhedra.html#cortex.polyutils.Surface.polyhedra">[docs]</a>    <span class="k">def</span> <span class="nf">polyhedra</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">wm</span><span class="p">):</span>
-        <span class="sd">&#39;&#39;&#39;Iterates through the polyhedra that make up the closest volume to a certain vertex&#39;&#39;&#39;</span>
+
+<div class="viewcode-block" id="Surface.polyhedra">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.polyhedra.html#cortex.polyutils.Surface.polyhedra">[docs]</a>
+    <span class="k">def</span> <span class="nf">polyhedra</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">wm</span><span class="p">):</span>
+<span class="w">        </span><span class="sd">&#39;&#39;&#39;Iterates through the polyhedra that make up the closest volume to a certain vertex&#39;&#39;&#39;</span>
         <span class="k">for</span> <span class="n">p</span><span class="p">,</span> <span class="n">facerow</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">connected</span><span class="p">):</span>
             <span class="n">faces</span> <span class="o">=</span> <span class="n">facerow</span><span class="o">.</span><span class="n">indices</span>
             <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span> <span class="o">=</span> <span class="n">_ptset</span><span class="p">(),</span> <span class="n">_quadset</span><span class="p">()</span>
@@ -867,7 +906,10 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
 
             <span class="k">yield</span> <span class="n">pts</span><span class="o">.</span><span class="n">points</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">polys</span><span class="o">.</span><span class="n">triangles</span><span class="p">))</span></div>
 
-<div class="viewcode-block" id="Surface.patches"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.patches.html#cortex.polyutils.Surface.patches">[docs]</a>    <span class="k">def</span> <span class="nf">patches</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">auxpts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">n</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Surface.patches">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.patches.html#cortex.polyutils.Surface.patches">[docs]</a>
+    <span class="k">def</span> <span class="nf">patches</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">auxpts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">n</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
         <span class="k">def</span> <span class="nf">align_polys</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
             <span class="n">x</span><span class="p">,</span> <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nonzero</span><span class="p">(</span><span class="n">polys</span> <span class="o">==</span> <span class="n">p</span><span class="p">)</span>
             <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vstack</span><span class="p">([</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">y</span><span class="o">+</span><span class="mi">1</span><span class="p">)</span><span class="o">%</span><span class="mi">3</span><span class="p">,</span> <span class="p">(</span><span class="n">y</span><span class="o">+</span><span class="mi">2</span><span class="p">)</span><span class="o">%</span><span class="mi">3</span><span class="p">])</span><span class="o">.</span><span class="n">T</span>
@@ -911,10 +953,15 @@ <h1>Source code for cortex.polyutils.surface</h1><div class="highlight"><pre>
             <span class="k">else</span><span class="p">:</span>
                 <span class="k">yield</span> <span class="kc">None</span></div>
 
-<div class="viewcode-block" id="Surface.edge_collapse"><a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.edge_collapse.html#cortex.polyutils.Surface.edge_collapse">[docs]</a>    <span class="k">def</span> <span class="nf">edge_collapse</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">p1</span><span class="p">,</span> <span class="n">p2</span><span class="p">,</span> <span class="n">target</span><span class="p">):</span>
+
+<div class="viewcode-block" id="Surface.edge_collapse">
+<a class="viewcode-back" href="../../../generated/Surface/cortex.polyutils.Surface.edge_collapse.html#cortex.polyutils.Surface.edge_collapse">[docs]</a>
+    <span class="k">def</span> <span class="nf">edge_collapse</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">p1</span><span class="p">,</span> <span class="n">p2</span><span class="p">,</span> <span class="n">target</span><span class="p">):</span>
         <span class="k">raise</span> <span class="ne">NotImplementedError</span>
         <span class="n">face1</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">connected</span><span class="p">[</span><span class="n">p1</span><span class="p">]</span>
-        <span class="n">face2</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">connected</span><span class="p">[</span><span class="n">p2</span><span class="p">]</span></div></div>
+        <span class="n">face2</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">connected</span><span class="p">[</span><span class="n">p2</span><span class="p">]</span></div>
+</div>
+
 
 
 <span class="k">class</span> <span class="nc">_ptset</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
@@ -996,7 +1043,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -1004,8 +1051,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -1019,11 +1066,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/quickflat/view.html b/_modules/cortex/quickflat/view.html
index e31e6006e..7ab4c4fdc 100644
--- a/_modules/cortex/quickflat/view.html
+++ b/_modules/cortex/quickflat/view.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.quickflat.view &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
-    <script src="../../../_static/jquery.js"></script>
-    <script src="../../../_static/underscore.js"></script>
-    <script src="../../../_static/doctools.js"></script>
+    <title>cortex.quickflat.view &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
    
   <link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -65,7 +64,9 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">default_colorbar_locations</span><span class="p">[</span><span class="n">colorbar_location</span><span class="p">]</span>
 
 
-<div class="viewcode-block" id="make_figure"><a class="viewcode-back" href="../../../generated/cortex.quickflat.make_figure.html#cortex.quickflat.make_figure">[docs]</a><span class="k">def</span> <span class="nf">make_figure</span><span class="p">(</span><span class="n">braindata</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">pixelwise</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">thick</span><span class="o">=</span><span class="mi">32</span><span class="p">,</span> <span class="n">sampler</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">,</span>
+<div class="viewcode-block" id="make_figure">
+<a class="viewcode-back" href="../../../generated/cortex.quickflat.make_figure.html#cortex.quickflat.make_figure">[docs]</a>
+<span class="k">def</span> <span class="nf">make_figure</span><span class="p">(</span><span class="n">braindata</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">pixelwise</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">thick</span><span class="o">=</span><span class="mi">32</span><span class="p">,</span> <span class="n">sampler</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">,</span>
                 <span class="n">height</span><span class="o">=</span><span class="mi">1024</span><span class="p">,</span> <span class="n">dpi</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="n">depth</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">with_rois</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">with_sulci</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                 <span class="n">with_labels</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">with_colorbar</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">with_borders</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                 <span class="n">with_dropout</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">with_curvature</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">extra_disp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
@@ -75,7 +76,7 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
                 <span class="n">curvature_contrast</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">curvature_threshold</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">fig</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">extra_hatch</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                 <span class="n">colorbar_ticks</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">colorbar_location</span><span class="o">=</span><span class="s1">&#39;center&#39;</span><span class="p">,</span> <span class="n">roi_list</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                 <span class="n">nanmean</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Show a Volume or Vertex on a flatmap with matplotlib.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Show a Volume or Vertex on a flatmap with matplotlib.</span>
 
 <span class="sd">    Note that **kwargs are ONLY present now for backward compatibility / warnings. No kwargs</span>
 <span class="sd">    should be used.</span>
@@ -116,7 +117,7 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
 <span class="sd">    linecolor : tuple of float, optional</span>
 <span class="sd">        (R, G, B, A) specification of line color</span>
 <span class="sd">    roifill : tuple of float, optional</span>
-<span class="sd">        (R, G, B, A) sepcification for the fill of each ROI region</span>
+<span class="sd">        (R, G, B, A) specification for the fill of each ROI region</span>
 <span class="sd">    shadow : int, optional</span>
 <span class="sd">        Standard deviation of the gaussian shadow. Set to 0 if you want no shadow</span>
 <span class="sd">    labelsize : str, optional</span>
@@ -263,7 +264,7 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
 
     <span class="c1"># Add (apply) cutout of flatmap</span>
     <span class="k">if</span> <span class="n">cutout</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">extents</span> <span class="o">=</span> <span class="n">composite</span><span class="o">.</span><span class="n">add_cutout</span><span class="p">(</span><span class="n">ax</span><span class="p">,</span> <span class="n">cutout</span><span class="p">,</span> <span class="n">dataview</span><span class="p">,</span> <span class="n">layers</span><span class="p">)</span>
+        <span class="n">extents</span> <span class="o">=</span> <span class="n">composite</span><span class="o">.</span><span class="n">add_cutout</span><span class="p">(</span><span class="n">ax</span><span class="p">,</span> <span class="n">cutout</span><span class="p">,</span> <span class="n">dataview</span><span class="p">,</span> <span class="n">layers</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="n">overlay_file</span><span class="p">)</span>
 
     <span class="k">if</span> <span class="n">with_colorbar</span><span class="p">:</span>
         <span class="n">colorbar_location</span> <span class="o">=</span> <span class="n">_check_colorbar_location</span><span class="p">(</span><span class="n">colorbar_location</span><span class="p">)</span>
@@ -287,9 +288,12 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
 
     <span class="k">return</span> <span class="n">fig</span></div>
 
-<div class="viewcode-block" id="make_png"><a class="viewcode-back" href="../../../generated/cortex.quickflat.make_png.html#cortex.quickflat.make_png">[docs]</a><span class="k">def</span> <span class="nf">make_png</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">braindata</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">pixelwise</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">sampler</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">,</span> <span class="n">height</span><span class="o">=</span><span class="mi">1024</span><span class="p">,</span>
+
+<div class="viewcode-block" id="make_png">
+<a class="viewcode-back" href="../../../generated/cortex.quickflat.make_png.html#cortex.quickflat.make_png">[docs]</a>
+<span class="k">def</span> <span class="nf">make_png</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">braindata</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">pixelwise</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">sampler</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">,</span> <span class="n">height</span><span class="o">=</span><span class="mi">1024</span><span class="p">,</span>
              <span class="n">bgcolor</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">dpi</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Create a PNG of the VertexData or VolumeData on a flatmap.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Create a PNG of the VertexData or VolumeData on a flatmap.</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -330,7 +334,7 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
 <span class="sd">    linecolor : tuple of float, optional</span>
 <span class="sd">        (R, G, B, A) specification of line color</span>
 <span class="sd">    roifill : tuple of float, optional</span>
-<span class="sd">        (R, G, B, A) sepcification for the fill of each ROI region</span>
+<span class="sd">        (R, G, B, A) specification for the fill of each ROI region</span>
 <span class="sd">    shadow : int, optional</span>
 <span class="sd">        Standard deviation of the gaussian shadow. Set to 0 if you want no shadow</span>
 <span class="sd">    labelsize : str, optional</span>
@@ -355,9 +359,12 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
     <span class="n">fig</span><span class="o">.</span><span class="n">clf</span><span class="p">()</span>
     <span class="n">plt</span><span class="o">.</span><span class="n">close</span><span class="p">(</span><span class="n">fig</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="make_svg"><a class="viewcode-back" href="../../../generated/cortex.quickflat.make_svg.html#cortex.quickflat.make_svg">[docs]</a><span class="k">def</span> <span class="nf">make_svg</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">braindata</span><span class="p">,</span> <span class="n">with_labels</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">with_curvature</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">layers</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;rois&#39;</span><span class="p">],</span>
+
+<div class="viewcode-block" id="make_svg">
+<a class="viewcode-back" href="../../../generated/cortex.quickflat.make_svg.html#cortex.quickflat.make_svg">[docs]</a>
+<span class="k">def</span> <span class="nf">make_svg</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">braindata</span><span class="p">,</span> <span class="n">with_labels</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">with_curvature</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">layers</span><span class="o">=</span><span class="p">[</span><span class="s1">&#39;rois&#39;</span><span class="p">],</span>
              <span class="n">height</span><span class="o">=</span><span class="mi">1024</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">with_dropout</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Save an svg file of the desired flatmap.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Save an svg file of the desired flatmap.</span>
 
 <span class="sd">    This function creates an SVG file with vector graphic ROIs overlaid on a single png image.</span>
 <span class="sd">    Ideally, this function would layer different images (curvature, data, dropout, etc), but</span>
@@ -447,8 +454,9 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
     <span class="n">roipack</span><span class="o">.</span><span class="n">get_svg</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">layers</span><span class="o">=</span><span class="n">layers</span><span class="p">,</span> <span class="n">labels</span><span class="o">=</span><span class="n">with_labels</span><span class="p">,</span> <span class="n">with_ims</span><span class="o">=</span><span class="n">image_data</span><span class="p">)</span></div>
 
 
+
 <span class="k">def</span> <span class="nf">make_gif</span><span class="p">(</span><span class="n">output_destination</span><span class="p">,</span> <span class="n">volumes</span><span class="p">,</span> <span class="n">frame_duration</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="o">**</span><span class="n">figure_kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Make an animated gif from several pycortex volumes</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Make an animated gif from several pycortex volumes</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -489,13 +497,13 @@ <h1>Source code for cortex.quickflat.view</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Wrapper for make_figure()&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Wrapper for make_figure()&quot;&quot;&quot;</span>
     <span class="k">return</span> <span class="n">make_figure</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
 
 <span class="k">def</span> <span class="nf">make_movie</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">height</span><span class="o">=</span><span class="mi">1024</span><span class="p">,</span>
                <span class="n">sampler</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">,</span> <span class="n">dpi</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="n">tr</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">interp</span><span class="o">=</span><span class="s1">&#39;linear&#39;</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="mi">30</span><span class="p">,</span>
                <span class="n">vcodec</span><span class="o">=</span><span class="s1">&#39;libtheora&#39;</span><span class="p">,</span> <span class="n">bitrate</span><span class="o">=</span><span class="s2">&quot;8000k&quot;</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Create a movie of an 4D data set&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Create a movie of an 4D data set&quot;&quot;&quot;</span>
     <span class="k">raise</span> <span class="ne">NotImplementedError</span>
     <span class="kn">import</span> <span class="nn">sys</span>
     <span class="kn">import</span> <span class="nn">shlex</span>
@@ -585,7 +593,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -593,8 +601,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -608,11 +616,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/segment.html b/_modules/cortex/segment.html
index ff1f5b1c9..f32d50f35 100644
--- a/_modules/cortex/segment.html
+++ b/_modules/cortex/segment.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.segment &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.segment &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -58,8 +57,10 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
 <span class="n">slim_path</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;dependency_paths&#39;</span><span class="p">,</span> <span class="s1">&#39;slim&#39;</span><span class="p">)</span>
 
 
-<div class="viewcode-block" id="init_subject"><a class="viewcode-back" href="../../generated/cortex.segment.init_subject.html#cortex.segment.init_subject">[docs]</a><span class="k">def</span> <span class="nf">init_subject</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">filenames</span><span class="p">,</span> <span class="n">do_import_subject</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Run the first initial segmentation for a subject&#39;s anatomy (in Freesurfer).</span>
+<div class="viewcode-block" id="init_subject">
+<a class="viewcode-back" href="../../generated/cortex.segment.init_subject.html#cortex.segment.init_subject">[docs]</a>
+<span class="k">def</span> <span class="nf">init_subject</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">filenames</span><span class="p">,</span> <span class="n">do_import_subject</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Run the first initial segmentation for a subject&#39;s anatomy (in Freesurfer).</span>
 
 <span class="sd">    This function creates a Freesurfer subject and runs autorecon-all, </span>
 <span class="sd">    then (optionally) imports the subject into the pycortex database.</span>
@@ -100,11 +101,12 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
         <span class="n">import_freesurfer_subject</span><span class="p">(</span><span class="n">subject</span><span class="p">)</span></div>
 
 
+
 <span class="k">def</span> <span class="nf">edit_segmentation</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span>
                       <span class="n">volumes</span><span class="o">=</span><span class="p">(</span><span class="s1">&#39;aseg.mgz&#39;</span><span class="p">,</span> <span class="s1">&#39;brainmask.mgz&#39;</span><span class="p">,</span> <span class="s1">&#39;wm.mgz&#39;</span><span class="p">),</span>
                       <span class="n">surfaces</span><span class="o">=</span><span class="p">(</span><span class="s1">&#39;lh.smoothwm&#39;</span><span class="p">,</span> <span class="s1">&#39;rh.smoothwm&#39;</span><span class="p">,</span> <span class="s1">&#39;lh.pial&#39;</span><span class="p">,</span> <span class="s1">&#39;rh.pial&#39;</span><span class="p">),</span>
                       <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Edit automatic segmentation results using freeview</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Edit automatic segmentation results using freeview</span>
 
 <span class="sd">    Opens an instance of freeview with relevant files loaded.</span>
 
@@ -160,10 +162,12 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
     <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;    `cortex.segment.run_freesurfer_recon(&#39;</span><span class="si">%s</span><span class="s2">&#39;, &#39;pia&#39;)`&quot;</span><span class="o">%</span><span class="n">subject</span><span class="p">)</span>
 
 
-<div class="viewcode-block" id="cut_surface"><a class="viewcode-back" href="../../generated/cortex.segment.cut_surface.html#cortex.segment.cut_surface">[docs]</a><span class="k">def</span> <span class="nf">cut_surface</span><span class="p">(</span><span class="n">cx_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s1">&#39;flatten&#39;</span><span class="p">,</span> <span class="n">fs_subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+<div class="viewcode-block" id="cut_surface">
+<a class="viewcode-back" href="../../generated/cortex.segment.cut_surface.html#cortex.segment.cut_surface">[docs]</a>
+<span class="k">def</span> <span class="nf">cut_surface</span><span class="p">(</span><span class="n">cx_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s1">&#39;flatten&#39;</span><span class="p">,</span> <span class="n">fs_subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                 <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">flatten_with</span><span class="o">=</span><span class="s1">&#39;freesurfer&#39;</span><span class="p">,</span> 
                 <span class="n">do_import_subject</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">blender_cmd</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Initializes an interface to cut the segmented surface for flatmapping.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Initializes an interface to cut the segmented surface for flatmapping.</span>
 <span class="sd">    This function creates or opens a blend file in your filestore which allows</span>
 <span class="sd">    surfaces to be cut along hand-defined seams. Blender will automatically</span>
 <span class="sd">    open the file. After edits are made, remember to save the file, then exit</span>
@@ -181,14 +185,15 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
 <span class="sd">        Which hemisphere to flatten. Should be &quot;lh&quot; or &quot;rh&quot;</span>
 <span class="sd">    name : str, optional</span>
 <span class="sd">        String name of the current flatten attempt. Defaults to &quot;flatten&quot;</span>
-<span class="sd">    data : Dataview</span>
-<span class="sd">        A data view object to display on the surface as a cutting guide.</span>
+<span class="sd">    data : Dataview or List(Dataview)</span>
+<span class="sd">        A data view object or list of data view objects to display on the </span>
+<span class="sd">        surface as a cutting guide.</span>
 <span class="sd">    fs_subject : str</span>
 <span class="sd">        Name of Freesurfer subject (if different from pycortex subject)</span>
 <span class="sd">        None defaults to `cx_subject`</span>
 <span class="sd">    freesurfer_subject_dir : str</span>
 <span class="sd">        Name of Freesurfer subject directory. None defaults to SUBJECTS_DIR</span>
-<span class="sd">        environment varible</span>
+<span class="sd">        environment variable</span>
 <span class="sd">    flatten_with : str</span>
 <span class="sd">        &#39;freesurfer&#39; or &#39;SLIM&#39; - &#39;freesurfer&#39; (default) uses freesurfer&#39;s </span>
 <span class="sd">        `mris_flatten` function to flatten the cut surface. &#39;SLIM&#39; uses</span>
@@ -219,7 +224,11 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
         <span class="n">blender</span><span class="o">.</span><span class="n">fs_cut</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">fs_subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="p">)</span>
     <span class="c1"># Add localizer data to facilitate cutting</span>
     <span class="k">if</span> <span class="n">data</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">blender</span><span class="o">.</span><span class="n">add_cutdata</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">data</span><span class="o">.</span><span class="n">description</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+            <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
+                <span class="n">blender</span><span class="o">.</span><span class="n">add_cutdata</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">d</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">d</span><span class="o">.</span><span class="n">description</span><span class="p">)</span>
+        <span class="k">else</span><span class="p">:</span>
+            <span class="n">blender</span><span class="o">.</span><span class="n">add_cutdata</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="n">data</span><span class="o">.</span><span class="n">description</span><span class="p">)</span>
     <span class="k">if</span> <span class="n">blender_cmd</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">blender_cmd</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;dependency_paths&#39;</span><span class="p">,</span> <span class="s1">&#39;blender&#39;</span><span class="p">)</span>
     <span class="c1"># May be redundant after blender.fs_cut above...</span>
@@ -270,9 +279,10 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
     <span class="k">return</span></div>
 
 
+
 <span class="k">def</span> <span class="nf">flatten_slim</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">patch</span><span class="p">,</span> <span class="n">n_iterations</span><span class="o">=</span><span class="mi">20</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                  <span class="n">slim_path</span><span class="o">=</span><span class="n">slim_path</span><span class="p">,</span> <span class="n">do_flatten</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Flatten brain w/ slim object flattening</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Flatten brain w/ slim object flattening</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -371,7 +381,7 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">show_surface</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">hemi</span><span class="p">,</span> <span class="n">surface_type</span><span class="p">,</span> <span class="n">patch</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">flatten_step</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
 <span class="sd">    subject: str</span>
@@ -419,8 +429,10 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
 
 <span class="c1">### DEPRECATED ###</span>
 
-<div class="viewcode-block" id="fix_wm"><a class="viewcode-back" href="../../generated/cortex.segment.fix_wm.html#cortex.segment.fix_wm">[docs]</a><span class="k">def</span> <span class="nf">fix_wm</span><span class="p">(</span><span class="n">subject</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Initializes an interface to make white matter edits to the surface.</span>
+<div class="viewcode-block" id="fix_wm">
+<a class="viewcode-back" href="../../generated/cortex.segment.fix_wm.html#cortex.segment.fix_wm">[docs]</a>
+<span class="k">def</span> <span class="nf">fix_wm</span><span class="p">(</span><span class="n">subject</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Initializes an interface to make white matter edits to the surface.</span>
 <span class="sd">    This will open two windows -- a tkmedit window that makes the actual edits,</span>
 <span class="sd">    as well as a mayavi window to display the surface. Clicking on the mayavi window</span>
 <span class="sd">    will drop markers which can be loaded using the &quot;Goto Save Point&quot; button in tkmedit.</span>
@@ -455,9 +467,12 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
 
     <span class="n">import_freesurfer_subject</span><span class="p">(</span><span class="n">subject</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="fix_pia"><a class="viewcode-back" href="../../generated/cortex.segment.fix_pia.html#cortex.segment.fix_pia">[docs]</a><span class="k">def</span> <span class="nf">fix_pia</span><span class="p">(</span><span class="n">subject</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Initializes an interface to make pial surface edits.</span>
-<span class="sd">    This function will open two windows -- a tkmedit window that makse the actual edits,</span>
+
+<div class="viewcode-block" id="fix_pia">
+<a class="viewcode-back" href="../../generated/cortex.segment.fix_pia.html#cortex.segment.fix_pia">[docs]</a>
+<span class="k">def</span> <span class="nf">fix_pia</span><span class="p">(</span><span class="n">subject</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Initializes an interface to make pial surface edits.</span>
+<span class="sd">    This function will open two windows -- a tkmedit window that makes the actual edits,</span>
 <span class="sd">    as well as a mayavi window to display the surface. Clicking on the mayavi window</span>
 <span class="sd">    will drop markers which can be loaded using the &quot;Goto Save Point&quot; button in tkmedit.</span>
 
@@ -493,6 +508,7 @@ <h1>Source code for cortex.segment</h1><div class="highlight"><pre>
 
 
 
+
 <span class="k">def</span> <span class="nf">_cycle_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">surf</span><span class="p">):</span>
     <span class="n">status</span> <span class="o">=</span> <span class="n">mp</span><span class="o">.</span><span class="n">Value</span><span class="p">(</span><span class="s1">&#39;b&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
     <span class="k">def</span> <span class="nf">cycle_surf</span><span class="p">():</span>
@@ -561,7 +577,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -569,8 +585,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -584,11 +600,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/surfinfo.html b/_modules/cortex/surfinfo.html
index c546a794b..00c4d9409 100644
--- a/_modules/cortex/surfinfo.html
+++ b/_modules/cortex/surfinfo.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.surfinfo &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.surfinfo &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -53,8 +52,10 @@ <h1>Source code for cortex.surfinfo</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">.database</span> <span class="kn">import</span> <span class="n">db</span>
 <span class="kn">from</span> <span class="nn">.xfm</span> <span class="kn">import</span> <span class="n">Transform</span>
 
-<div class="viewcode-block" id="curvature"><a class="viewcode-back" href="../../generated/cortex.surfinfo.curvature.html#cortex.surfinfo.curvature">[docs]</a><span class="k">def</span> <span class="nf">curvature</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">smooth</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="curvature">
+<a class="viewcode-back" href="../../generated/cortex.surfinfo.curvature.html#cortex.surfinfo.curvature">[docs]</a>
+<span class="k">def</span> <span class="nf">curvature</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">smooth</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Compute smoothed mean curvature of the fiducial surface for the given </span>
 <span class="sd">    subject and save it to `outfile`.</span>
 
@@ -74,8 +75,11 @@ <h1>Source code for cortex.surfinfo</h1><div class="highlight"><pre>
         <span class="n">curvs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">curv</span><span class="p">)</span>
     <span class="n">np</span><span class="o">.</span><span class="n">savez</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">left</span><span class="o">=</span><span class="n">curvs</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">right</span><span class="o">=</span><span class="n">curvs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span></div>
 
-<div class="viewcode-block" id="distortion"><a class="viewcode-back" href="../../generated/cortex.surfinfo.distortion.html#cortex.surfinfo.distortion">[docs]</a><span class="k">def</span> <span class="nf">distortion</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">dist_type</span><span class="o">=</span><span class="s1">&#39;areal&#39;</span><span class="p">,</span> <span class="n">smooth</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="distortion">
+<a class="viewcode-back" href="../../generated/cortex.surfinfo.distortion.html#cortex.surfinfo.distortion">[docs]</a>
+<span class="k">def</span> <span class="nf">distortion</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">dist_type</span><span class="o">=</span><span class="s1">&#39;areal&#39;</span><span class="p">,</span> <span class="n">smooth</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Compute distortion of flatmap relative to fiducial surface and save it</span>
 <span class="sd">    at `outfile`. Several different types of distortion are available:</span>
 <span class="sd">    </span>
@@ -112,8 +116,11 @@ <h1>Source code for cortex.surfinfo</h1><div class="highlight"><pre>
 
     <span class="n">np</span><span class="o">.</span><span class="n">savez</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">left</span><span class="o">=</span><span class="n">distortions</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">right</span><span class="o">=</span><span class="n">distortions</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span></div>
 
-<div class="viewcode-block" id="thickness"><a class="viewcode-back" href="../../generated/cortex.surfinfo.thickness.html#cortex.surfinfo.thickness">[docs]</a><span class="k">def</span> <span class="nf">thickness</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="thickness">
+<a class="viewcode-back" href="../../generated/cortex.surfinfo.thickness.html#cortex.surfinfo.thickness">[docs]</a>
+<span class="k">def</span> <span class="nf">thickness</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Compute cortical thickness as the distance between corresponding pial and </span>
 <span class="sd">    white matter vertices for the given subject. Note that this is slightly</span>
 <span class="sd">    different than the method used by Freesurfer, and will yield ever-so-slightly</span>
@@ -133,8 +140,11 @@ <h1>Source code for cortex.surfinfo</h1><div class="highlight"><pre>
     <span class="n">right</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(((</span><span class="n">pr</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">wr</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span><span class="o">**</span><span class="mi">2</span><span class="p">)</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="mi">1</span><span class="p">))</span>
     <span class="n">np</span><span class="o">.</span><span class="n">savez</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">left</span><span class="o">=</span><span class="n">left</span><span class="p">,</span> <span class="n">right</span><span class="o">=</span><span class="n">right</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="tissots_indicatrix"><a class="viewcode-back" href="../../generated/cortex.surfinfo.tissots_indicatrix.html#cortex.surfinfo.tissots_indicatrix">[docs]</a><span class="k">def</span> <span class="nf">tissots_indicatrix</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">sub</span><span class="p">,</span> <span class="n">radius</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">50</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="tissots_indicatrix">
+<a class="viewcode-back" href="../../generated/cortex.surfinfo.tissots_indicatrix.html#cortex.surfinfo.tissots_indicatrix">[docs]</a>
+<span class="k">def</span> <span class="nf">tissots_indicatrix</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">sub</span><span class="p">,</span> <span class="n">radius</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">50</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Compute a Tissot&#39;s indicatrix for the given subject and save the result to</span>
 <span class="sd">    a file. This involves randomly filling in discs of fixed geodesic radius</span>
 <span class="sd">    on the fiducial surface.</span>
@@ -184,10 +194,15 @@ <h1>Source code for cortex.surfinfo</h1><div class="highlight"><pre>
 
         <span class="n">tissots</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tissot_array</span><span class="p">)</span>
         <span class="n">allcenters</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">centers</span><span class="p">))</span>
-
+    
+    <span class="c1"># make an array of objects to allow different lengths for each hemisphere</span>
+    <span class="n">allcenters</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">allcenters</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
     <span class="n">np</span><span class="o">.</span><span class="n">savez</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">left</span><span class="o">=</span><span class="n">tissots</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">right</span><span class="o">=</span><span class="n">tissots</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">centers</span><span class="o">=</span><span class="n">allcenters</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="flat_border"><a class="viewcode-back" href="../../generated/cortex.surfinfo.flat_border.html#cortex.surfinfo.flat_border">[docs]</a><span class="k">def</span> <span class="nf">flat_border</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
+
+<div class="viewcode-block" id="flat_border">
+<a class="viewcode-back" href="../../generated/cortex.surfinfo.flat_border.html#cortex.surfinfo.flat_border">[docs]</a>
+<span class="k">def</span> <span class="nf">flat_border</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">subject</span><span class="p">):</span>
     <span class="n">flatpts</span><span class="p">,</span> <span class="n">flatpolys</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;flat&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
     <span class="n">flatpolyset</span> <span class="o">=</span> <span class="nb">set</span><span class="p">([</span><span class="nb">tuple</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">flatpolys</span><span class="p">])</span>
     
@@ -254,6 +269,7 @@ <h1>Source code for cortex.surfinfo</h1><div class="highlight"><pre>
             <span class="n">lines</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">pts</span><span class="p">[</span><span class="n">pbnd</span><span class="p">,:</span><span class="mi">2</span><span class="p">])</span>
     
     <span class="n">np</span><span class="o">.</span><span class="n">savez</span><span class="p">(</span><span class="n">outfile</span><span class="p">,</span> <span class="n">lines</span><span class="o">=</span><span class="n">lines</span><span class="p">,</span> <span class="n">ismwalls</span><span class="o">=</span><span class="n">ismwalls</span><span class="p">)</span></div>
+
 </pre></div>
 
           </div>
@@ -304,7 +320,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -312,8 +328,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -327,11 +343,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/utils.html b/_modules/cortex/utils.html
index 113e6c09d..260bd76a4 100644
--- a/_modules/cortex/utils.html
+++ b/_modules/cortex/utils.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.utils &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.utils &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -37,29 +36,28 @@
   <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span></span><span class="sd">&quot;&quot;&quot;Contain utility functions</span>
 <span class="sd">&quot;&quot;&quot;</span>
+<span class="kn">import</span> <span class="nn">binascii</span>
+<span class="kn">import</span> <span class="nn">copy</span>
 <span class="kn">import</span> <span class="nn">io</span>
 <span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">h5py</span>
-<span class="kn">import</span> <span class="nn">copy</span>
 <span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">binascii</span>
-<span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">tarfile</span>
-<span class="kn">import</span> <span class="nn">wget</span>
 <span class="kn">import</span> <span class="nn">tempfile</span>
-
+<span class="kn">import</span> <span class="nn">warnings</span>
 <span class="kn">from</span> <span class="nn">distutils.version</span> <span class="kn">import</span> <span class="n">LooseVersion</span>
-
-<span class="kn">from</span> <span class="nn">six</span> <span class="kn">import</span> <span class="n">string_types</span>
 <span class="kn">from</span> <span class="nn">importlib</span> <span class="kn">import</span> <span class="n">import_module</span>
+
+<span class="kn">import</span> <span class="nn">h5py</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+<span class="kn">import</span> <span class="nn">wget</span>
+
+<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">formats</span>
 <span class="kn">from</span> <span class="nn">.database</span> <span class="kn">import</span> <span class="n">db</span>
-<span class="kn">from</span> <span class="nn">.volume</span> <span class="kn">import</span> <span class="n">anat2epispace</span>
-<span class="kn">from</span> <span class="nn">.options</span> <span class="kn">import</span> <span class="n">config</span>
 <span class="kn">from</span> <span class="nn">.freesurfer</span> <span class="kn">import</span> <span class="n">fs_aseg_dict</span>
+<span class="kn">from</span> <span class="nn">.options</span> <span class="kn">import</span> <span class="n">config</span>
 <span class="kn">from</span> <span class="nn">.polyutils</span> <span class="kn">import</span> <span class="n">Surface</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">formats</span>
 <span class="kn">from</span> <span class="nn">.testing_utils</span> <span class="kn">import</span> <span class="n">INKSCAPE_VERSION</span>
+<span class="kn">from</span> <span class="nn">.volume</span> <span class="kn">import</span> <span class="n">anat2epispace</span>
 
 
 <span class="k">class</span> <span class="nc">DocLoader</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
@@ -82,10 +80,12 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 
 <span class="n">get_mapper</span> <span class="o">=</span> <span class="n">DocLoader</span><span class="p">(</span><span class="s2">&quot;get_mapper&quot;</span><span class="p">,</span> <span class="s2">&quot;.mapper&quot;</span><span class="p">,</span> <span class="s2">&quot;cortex&quot;</span><span class="p">)</span>
 
-<div class="viewcode-block" id="get_ctmpack"><a class="viewcode-back" href="../../generated/cortex.utils.get_ctmpack.html#cortex.utils.get_ctmpack">[docs]</a><span class="k">def</span> <span class="nf">get_ctmpack</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">types</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;inflated&quot;</span><span class="p">,),</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;raw&quot;</span><span class="p">,</span> <span class="n">level</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+<div class="viewcode-block" id="get_ctmpack">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_ctmpack.html#cortex.utils.get_ctmpack">[docs]</a>
+<span class="k">def</span> <span class="nf">get_ctmpack</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">types</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;inflated&quot;</span><span class="p">,),</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;raw&quot;</span><span class="p">,</span> <span class="n">level</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                 <span class="n">decimate</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">external_svg</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                 <span class="n">overlays_available</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Creates ctm file for the specified input arguments.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Creates ctm file for the specified input arguments.</span>
 
 <span class="sd">    This is a cached file that specifies (1) the surfaces between which</span>
 <span class="sd">    to interpolate (`types` argument), (2) the `method` to interpolate</span>
@@ -142,8 +142,11 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
                                <span class="n">overlays_available</span><span class="o">=</span><span class="n">overlays_available</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">ctmfile</span></div>
 
-<div class="viewcode-block" id="get_ctmmap"><a class="viewcode-back" href="../../generated/cortex.utils.get_ctmmap.html#cortex.utils.get_ctmmap">[docs]</a><span class="k">def</span> <span class="nf">get_ctmmap</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="get_ctmmap">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_ctmmap.html#cortex.utils.get_ctmmap">[docs]</a>
+<span class="k">def</span> <span class="nf">get_ctmmap</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
 <span class="sd">    subject : str</span>
@@ -156,6 +159,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">    rnew :</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">from</span> <span class="nn">scipy.spatial</span> <span class="kn">import</span> <span class="n">cKDTree</span>
+
     <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">brainctm</span>
     <span class="n">jsfile</span> <span class="o">=</span> <span class="n">get_ctmpack</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
     <span class="n">ctmfile</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">jsfile</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span><span class="o">+</span><span class="s2">&quot;.ctm&quot;</span>
@@ -171,8 +175,11 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="n">rnew</span> <span class="o">=</span> <span class="n">rmap</span><span class="o">.</span><span class="n">query</span><span class="p">(</span><span class="n">right</span><span class="p">[</span><span class="mi">0</span><span class="p">])[</span><span class="mi">1</span><span class="p">]</span>
     <span class="k">return</span> <span class="n">lnew</span><span class="p">,</span> <span class="n">rnew</span></div>
 
-<div class="viewcode-block" id="get_cortical_mask"><a class="viewcode-back" href="../../generated/cortex.utils.get_cortical_mask.html#cortex.utils.get_cortical_mask">[docs]</a><span class="k">def</span> <span class="nf">get_cortical_mask</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Gets the cortical mask for a particular transform</span>
+
+<div class="viewcode-block" id="get_cortical_mask">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_cortical_mask.html#cortex.utils.get_cortical_mask">[docs]</a>
+<span class="k">def</span> <span class="nf">get_cortical_mask</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Gets the cortical mask for a particular transform</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -181,16 +188,24 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">    xfmname : str</span>
 <span class="sd">        Transform name</span>
 <span class="sd">    type : str</span>
-<span class="sd">        Mask type, one of {&#39;cortical&#39;,&#39;thin&#39;,&#39;thick&#39;, &#39;nearest&#39;}. &#39;cortical&#39; is exactly the</span>
-<span class="sd">        cortical ribbon, between the freesurfer-estimated white matter and pial</span>
-<span class="sd">        surfaces; &#39;thin&#39; is &lt; 2mm away from fiducial surface; &#39;thick&#39; is &lt; 8mm</span>
-<span class="sd">        away from fiducial surface.</span>
-<span class="sd">        &#39;nearest&#39; is nearest voxel only (??)</span>
+<span class="sd">        Mask type, one of {&quot;cortical&quot;, &quot;thin&quot;, &quot;thick&quot;, &quot;nearest&quot;, &quot;line_nearest&quot;}.</span>
+<span class="sd">          - &#39;cortical&#39; includes voxels contained within the cortical ribbon, </span>
+<span class="sd">          between the freesurfer-estimated white matter and pial surfaces. </span>
+<span class="sd">          - &#39;thin&#39; includes voxels that are &lt; 2mm away from the fiducial surface. </span>
+<span class="sd">          - &#39;thick&#39; includes voxels that are &lt; 8mm away from the fiducial surface.</span>
+<span class="sd">          - &#39;nearest&#39; includes only the voxels overlapping the fiducial surface.</span>
+<span class="sd">          - &#39;line_nearest&#39; includes all voxels that have any part within the cortical </span>
+<span class="sd">            ribbon.</span>
 
 <span class="sd">    Returns</span>
 <span class="sd">    -------</span>
 <span class="sd">    mask : array</span>
 <span class="sd">        boolean mask array for cortical voxels in functional space</span>
+
+<span class="sd">    Notes</span>
+<span class="sd">    -----</span>
+<span class="sd">    &quot;nearest&quot; is a conservative &quot;cortical&quot; mask, while &quot;line_nearest&quot; is a liberal </span>
+<span class="sd">    &quot;cortical&quot; mask.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="k">if</span> <span class="nb">type</span> <span class="o">==</span> <span class="s1">&#39;cortical&#39;</span><span class="p">:</span>
         <span class="n">ppts</span><span class="p">,</span> <span class="n">polys</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;pia&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
@@ -213,8 +228,11 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">get_mapper</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">type</span><span class="p">)</span><span class="o">.</span><span class="n">mask</span></div>
 
 
-<div class="viewcode-block" id="get_vox_dist"><a class="viewcode-back" href="../../generated/cortex.utils.get_vox_dist.html#cortex.utils.get_vox_dist">[docs]</a><span class="k">def</span> <span class="nf">get_vox_dist</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">surface</span><span class="o">=</span><span class="s2">&quot;fiducial&quot;</span><span class="p">,</span> <span class="n">max_dist</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">inf</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Get the distance (in mm) from each functional voxel to the closest</span>
+
+<div class="viewcode-block" id="get_vox_dist">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_vox_dist.html#cortex.utils.get_vox_dist">[docs]</a>
+<span class="k">def</span> <span class="nf">get_vox_dist</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">surface</span><span class="o">=</span><span class="s2">&quot;fiducial&quot;</span><span class="p">,</span> <span class="n">max_dist</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">inf</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Get the distance (in mm) from each functional voxel to the closest</span>
 <span class="sd">    point on the surface.</span>
 
 <span class="sd">    Parameters</span>
@@ -223,20 +241,19 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">        Name of the subject</span>
 <span class="sd">    xfmname : str</span>
 <span class="sd">        Name of the transform</span>
-<span class="sd">    shape : tuple</span>
-<span class="sd">        Output shape for the mask</span>
 <span class="sd">    max_dist : nonnegative float, optional</span>
 <span class="sd">        Limit computation to only voxels within `max_dist` mm of the surface.</span>
-<span class="sd">        Makes computation orders of magnitude faster for high-resolution</span>
-<span class="sd">        volumes.</span>
+<span class="sd">        Makes computation orders of magnitude faster for high-resolution volumes.</span>
 
 <span class="sd">    Returns</span>
 <span class="sd">    -------</span>
-<span class="sd">    dist : ndarray</span>
-<span class="sd">        Distance (in mm) to the closest point on the surface</span>
+<span class="sd">    dist : ndarray (z, y, x)</span>
+<span class="sd">        Array with the same shape as the reference image of `xfmname` containing</span>
+<span class="sd">        the distance (in mm) of each voxel to the closest point on the surface.</span>
 
-<span class="sd">    argdist : ndarray</span>
-<span class="sd">        Point index for the closest point</span>
+<span class="sd">    argdist : ndarray (z, y, x)</span>
+<span class="sd">        Array with the same shape as the reference image of `xfmname` containing</span>
+<span class="sd">        for each voxel the index of the closest point on the surface.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">from</span> <span class="nn">scipy.spatial</span> <span class="kn">import</span> <span class="n">cKDTree</span>
 
@@ -248,12 +265,16 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 
     <span class="n">tree</span> <span class="o">=</span> <span class="n">cKDTree</span><span class="p">(</span><span class="n">fiducial</span><span class="p">)</span>
     <span class="n">dist</span><span class="p">,</span> <span class="n">argdist</span> <span class="o">=</span> <span class="n">tree</span><span class="o">.</span><span class="n">query</span><span class="p">(</span><span class="n">mm</span><span class="p">,</span> <span class="n">distance_upper_bound</span><span class="o">=</span><span class="n">max_dist</span><span class="p">)</span>
-    <span class="n">dist</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="p">,</span><span class="n">y</span><span class="p">,</span><span class="n">z</span><span class="p">)</span>
-    <span class="n">argdist</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="p">,</span><span class="n">y</span><span class="p">,</span><span class="n">z</span><span class="p">)</span>
+    <span class="n">dist</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">z</span><span class="p">)</span>
+    <span class="n">argdist</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">z</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">dist</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">argdist</span><span class="o">.</span><span class="n">T</span></div>
 
-<div class="viewcode-block" id="get_hemi_masks"><a class="viewcode-back" href="../../generated/cortex.utils.get_hemi_masks.html#cortex.utils.get_hemi_masks">[docs]</a><span class="k">def</span> <span class="nf">get_hemi_masks</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;Returns a binary mask of the left and right hemisphere</span>
+
+
+<div class="viewcode-block" id="get_hemi_masks">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_hemi_masks.html#cortex.utils.get_hemi_masks">[docs]</a>
+<span class="k">def</span> <span class="nf">get_hemi_masks</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&#39;&#39;&#39;Returns a binary mask of the left and right hemisphere</span>
 <span class="sd">    surface voxels for the given subject.</span>
 
 <span class="sd">    Parameters</span>
@@ -270,9 +291,12 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">    &#39;&#39;&#39;</span>
     <span class="k">return</span> <span class="n">get_mapper</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">type</span><span class="p">)</span><span class="o">.</span><span class="n">hemimasks</span></div>
 
-<div class="viewcode-block" id="add_roi"><a class="viewcode-back" href="../../generated/cortex.utils.add_roi.html#cortex.utils.add_roi">[docs]</a><span class="k">def</span> <span class="nf">add_roi</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s2">&quot;new_roi&quot;</span><span class="p">,</span> <span class="n">open_inkscape</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">add_path</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+
+<div class="viewcode-block" id="add_roi">
+<a class="viewcode-back" href="../../generated/cortex.utils.add_roi.html#cortex.utils.add_roi">[docs]</a>
+<span class="k">def</span> <span class="nf">add_roi</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="s2">&quot;new_roi&quot;</span><span class="p">,</span> <span class="n">open_inkscape</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">add_path</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
             <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Add new flatmap image to the ROI file for a subject.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Add new flatmap image to the ROI file for a subject.</span>
 
 <span class="sd">    (The subject is specified in creation of the data object)</span>
 
@@ -303,8 +327,8 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">        Passed to cortex.quickflat.make_png</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">import</span> <span class="nn">subprocess</span> <span class="k">as</span> <span class="nn">sp</span>
-    <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">quickflat</span>
-    <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">dataset</span>
+
+    <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">dataset</span><span class="p">,</span> <span class="n">quickflat</span>
 
     <span class="n">dv</span> <span class="o">=</span> <span class="n">dataset</span><span class="o">.</span><span class="n">normalize</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
     <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dv</span><span class="p">,</span> <span class="n">dataset</span><span class="o">.</span><span class="n">Dataset</span><span class="p">):</span>
@@ -325,8 +349,22 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
             <span class="n">cmd</span> <span class="o">=</span> <span class="p">[</span><span class="n">inkscape_cmd</span><span class="p">,</span> <span class="n">svg</span><span class="o">.</span><span class="n">svgfile</span><span class="p">]</span>
         <span class="k">return</span> <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">cmd</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="get_roi_verts"><a class="viewcode-back" href="../../generated/cortex.utils.get_roi_verts.html#cortex.utils.get_roi_verts">[docs]</a><span class="k">def</span> <span class="nf">get_roi_verts</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">roi</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Return vertices for the given ROIs, or all ROIs if none are given.</span>
+
+
+<span class="k">def</span> <span class="nf">_get_neighbors_dict</span><span class="p">(</span><span class="n">polys</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return a dictionary of {vertex : set(neighbor vertices)} for the given polys&quot;&quot;&quot;</span>
+    <span class="n">neighbors_dict</span> <span class="o">=</span> <span class="p">{}</span>
+    <span class="k">for</span> <span class="n">poly</span> <span class="ow">in</span> <span class="n">polys</span><span class="p">:</span>
+        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">)):</span>
+            <span class="n">neighbors_dict</span><span class="o">.</span><span class="n">setdefault</span><span class="p">(</span><span class="n">poly</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">set</span><span class="p">())</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">poly</span><span class="p">[</span><span class="n">j</span><span class="p">])</span>
+            <span class="n">neighbors_dict</span><span class="o">.</span><span class="n">setdefault</span><span class="p">(</span><span class="n">poly</span><span class="p">[</span><span class="n">j</span><span class="p">],</span> <span class="nb">set</span><span class="p">())</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">poly</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+    <span class="k">return</span> <span class="n">neighbors_dict</span>
+
+
+<div class="viewcode-block" id="get_roi_verts">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_roi_verts.html#cortex.utils.get_roi_verts">[docs]</a>
+<span class="k">def</span> <span class="nf">get_roi_verts</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">roi</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return vertices for the given ROIs, or all ROIs if none are given.</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -338,6 +376,8 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">    mask : bool</span>
 <span class="sd">        if True, return a logical mask across vertices for the roi</span>
 <span class="sd">        if False, return a list of indices for the ROI</span>
+<span class="sd">    overlay_file : None or str</span>
+<span class="sd">        Pass another overlays file instead of the default overlays.svg</span>
 
 <span class="sd">    Returns</span>
 <span class="sd">    -------</span>
@@ -355,17 +395,32 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;flat&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
     <span class="n">goodpts</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">polys</span><span class="p">)</span>
 
+    <span class="c1"># Load also the pts and polys of the full surface without cuts, to recover</span>
+    <span class="c1"># vertices that were removed from the flat surface</span>
+    <span class="n">_</span><span class="p">,</span> <span class="n">polys_full</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;fiducial&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+    <span class="n">neighbors_dict</span> <span class="o">=</span> <span class="n">_get_neighbors_dict</span><span class="p">(</span><span class="n">polys_full</span><span class="p">)</span>
+
     <span class="k">if</span> <span class="n">roi</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">roi</span> <span class="o">=</span> <span class="n">svg</span><span class="o">.</span><span class="n">rois</span><span class="o">.</span><span class="n">shapes</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span>
 
     <span class="n">roidict</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">roi</span><span class="p">,</span> <span class="n">string_types</span><span class="p">):</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">roi</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
         <span class="n">roi</span> <span class="o">=</span> <span class="p">[</span><span class="n">roi</span><span class="p">]</span>
 
     <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">roi</span><span class="p">:</span>
         <span class="n">roi_idx</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">intersect1d</span><span class="p">(</span><span class="n">svg</span><span class="o">.</span><span class="n">rois</span><span class="o">.</span><span class="n">get_mask</span><span class="p">(</span><span class="n">name</span><span class="p">),</span> <span class="n">goodpts</span><span class="p">)</span>
+        <span class="c1"># Now we want to include also the vertices that were removed from the flat </span>
+        <span class="c1"># surface that is, for every vertex in roi_idx we want to add the pts that are </span>
+        <span class="c1"># not in goodpts but that are in pts_full</span>
+        <span class="c1"># to do that, we need to find the neighboring indices from polys_full</span>
+        <span class="n">extra_idx</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+        <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">roi_idx</span><span class="p">:</span>
+            <span class="n">extra_idx</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">ii</span> <span class="k">for</span> <span class="n">ii</span> <span class="ow">in</span> <span class="n">neighbors_dict</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="k">if</span> <span class="n">ii</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">goodpts</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">extra_idx</span><span class="p">:</span>
+            <span class="n">roi_idx</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">roi_idx</span><span class="p">,</span> <span class="nb">list</span><span class="p">(</span><span class="n">extra_idx</span><span class="p">))))</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">int</span><span class="p">)</span>
+
         <span class="k">if</span> <span class="n">mask</span><span class="p">:</span>
-            <span class="n">roidict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">pts</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="mi">1</span><span class="p">])</span> <span class="o">&gt;</span> <span class="mi">1</span>
+            <span class="n">roidict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">pts</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">bool</span><span class="p">)</span>
             <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">roi_idx</span><span class="p">):</span>
                 <span class="n">roidict</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">roi_idx</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
             <span class="k">else</span><span class="p">:</span>
@@ -376,8 +431,9 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">roidict</span></div>
 
 
-<span class="k">def</span> <span class="nf">get_roi_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">surf_type</span><span class="p">,</span> <span class="n">roi</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Similar to get_roi_verts, but gets both the points and the polys for an roi.</span>
+
+<span class="k">def</span> <span class="nf">get_roi_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">surf_type</span><span class="p">,</span> <span class="n">roi</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Similar to get_roi_verts, but gets both the points and the polys for an roi.</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -388,31 +444,35 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">        superinflated, flat)</span>
 <span class="sd">    roi : str</span>
 <span class="sd">        Name of ROI to get the surface geometry for.</span>
+<span class="sd">    overlay_file : None or str</span>
+<span class="sd">        Pass another overlays file instead of the default overlays.svg</span>
 
 <span class="sd">    Returns</span>
 <span class="sd">    -------</span>
 <span class="sd">    pts, polys : (array, array)</span>
 <span class="sd">        The points, specified in 3D space, as well as indices into pts specifying the polys.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">roi_verts_mask</span> <span class="o">=</span> <span class="n">get_roi_verts</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">roi</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+    <span class="n">roi_verts_mask</span> <span class="o">=</span> <span class="n">get_roi_verts</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">roi</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="n">overlay_file</span><span class="p">)</span>
     <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">surf_type</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
     <span class="n">vert_idx</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">where</span><span class="p">(</span><span class="n">roi_verts_mask</span><span class="p">[</span><span class="n">roi</span><span class="p">])[</span><span class="mi">0</span><span class="p">]</span>
     <span class="n">vert_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">(</span><span class="n">vert_idx</span><span class="p">)</span>
     <span class="n">roi_polys</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">xrange</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="n">polys</span><span class="p">)[</span><span class="mi">0</span><span class="p">]):</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">vert_set</span><span class="p">,</span> <span class="n">polys</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="p">:]))</span><span class="o">.</span><span class="n">all</span><span class="p">():</span>
+    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">shape</span><span class="p">(</span><span class="n">polys</span><span class="p">)[</span><span class="mi">0</span><span class="p">]):</span>
+        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">vert_set</span><span class="p">,</span> <span class="n">polys</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="p">:])))</span><span class="o">.</span><span class="n">all</span><span class="p">():</span>
             <span class="n">roi_polys</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">polys</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="p">:])</span>
     <span class="n">reindexed_polys</span> <span class="o">=</span> <span class="p">[]</span>
     <span class="n">vert_rev_hash_idx</span> <span class="o">=</span> <span class="p">{}</span>
     <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">vert_idx</span><span class="p">):</span>
         <span class="n">vert_rev_hash_idx</span><span class="p">[</span><span class="n">v</span><span class="p">]</span> <span class="o">=</span> <span class="n">i</span>
     <span class="k">for</span> <span class="n">poly</span> <span class="ow">in</span> <span class="n">roi_polys</span><span class="p">:</span>
-        <span class="n">reindexed_polys</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="n">vert_rev_hash_idx</span><span class="o">.</span><span class="n">get</span><span class="p">,</span> <span class="n">poly</span><span class="p">))</span>
-    <span class="k">return</span> <span class="p">(</span><span class="n">pts</span><span class="p">[</span><span class="n">vert_idx</span><span class="p">],</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">reindexed_polys</span><span class="p">))</span>
+        <span class="n">reindexed_polys</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="n">vert_rev_hash_idx</span><span class="o">.</span><span class="n">get</span><span class="p">,</span> <span class="n">poly</span><span class="p">)))</span>
+    <span class="k">return</span> <span class="n">pts</span><span class="p">[</span><span class="n">vert_idx</span><span class="p">],</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">reindexed_polys</span><span class="p">)</span>
 
 
-<div class="viewcode-block" id="get_roi_mask"><a class="viewcode-back" href="../../generated/cortex.utils.get_roi_mask.html#cortex.utils.get_roi_mask">[docs]</a><span class="k">def</span> <span class="nf">get_roi_mask</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">roi</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">projection</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Return a mask for the given ROI(s)</span>
+<div class="viewcode-block" id="get_roi_mask">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_roi_mask.html#cortex.utils.get_roi_mask">[docs]</a>
+<span class="k">def</span> <span class="nf">get_roi_mask</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">roi</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">projection</span><span class="o">=</span><span class="s1">&#39;nearest&#39;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return a mask for the given ROI(s)</span>
 
 <span class="sd">    Deprecated - use get_roi_masks()</span>
 
@@ -440,13 +500,16 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
         <span class="c1"># This is broken; unclear when/if backward mappers ever worked this way.</span>
         <span class="c1">#left, right = mapper.backwards(vert_mask)</span>
         <span class="c1">#output[name] = left + right</span>
-        <span class="n">output</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mapper</span><span class="o">.</span><span class="n">backwards</span><span class="p">(</span><span class="n">verts</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">))</span>
+        <span class="n">output</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mapper</span><span class="o">.</span><span class="n">backwards</span><span class="p">(</span><span class="n">verts</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">float</span><span class="p">))</span>
         <span class="c1"># Threshold?</span>
     <span class="k">return</span> <span class="n">output</span></div>
 
 
-<div class="viewcode-block" id="get_aseg_mask"><a class="viewcode-back" href="../../generated/cortex.utils.get_aseg_mask.html#cortex.utils.get_aseg_mask">[docs]</a><span class="k">def</span> <span class="nf">get_aseg_mask</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">aseg_name</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">threshold</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Return an epi space mask of the given ID from freesurfer&#39;s automatic segmentation</span>
+
+<div class="viewcode-block" id="get_aseg_mask">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_aseg_mask.html#cortex.utils.get_aseg_mask">[docs]</a>
+<span class="k">def</span> <span class="nf">get_aseg_mask</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">aseg_name</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">threshold</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return an epi space mask of the given ID from freesurfer&#39;s automatic segmentation</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -487,7 +550,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">from</span> <span class="nn">.freesurfer</span> <span class="kn">import</span> <span class="n">fs_aseg_dict</span>
-    <span class="n">aseg</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;aseg&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
+    <span class="n">aseg</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s2">&quot;aseg&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
 
     <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">aseg_name</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">)):</span>
         <span class="n">aseg_name</span> <span class="o">=</span> <span class="p">[</span><span class="n">aseg_name</span><span class="p">]</span>
@@ -510,10 +573,13 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">mask</span></div>
 
 
-<div class="viewcode-block" id="get_roi_masks"><a class="viewcode-back" href="../../generated/cortex.utils.get_roi_masks.html#cortex.utils.get_roi_masks">[docs]</a><span class="k">def</span> <span class="nf">get_roi_masks</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">roi_list</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">gm_sampler</span><span class="o">=</span><span class="s1">&#39;cortical&#39;</span><span class="p">,</span> <span class="n">split_lr</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+
+<div class="viewcode-block" id="get_roi_masks">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_roi_masks.html#cortex.utils.get_roi_masks">[docs]</a>
+<span class="k">def</span> <span class="nf">get_roi_masks</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">roi_list</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">gm_sampler</span><span class="o">=</span><span class="s1">&#39;cortical&#39;</span><span class="p">,</span> <span class="n">split_lr</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                   <span class="n">allow_overlap</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">fail_for_missing_rois</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exclude_empty_rois</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
                   <span class="n">threshold</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">return_dict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Return a dictionary of roi masks</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Return a dictionary of roi masks</span>
 
 <span class="sd">    This function returns a single 3D array with a separate numerical index for each ROI,</span>
 
@@ -549,7 +615,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">        voxel (reflecting the fraction of that voxel inside the ROI) unless a threshold</span>
 <span class="sd">        is provided.</span>
 <span class="sd">    threshold : float [0-1]</span>
-<span class="sd">        value used to convert probablistic ROI values to a boolean mask for the ROI.</span>
+<span class="sd">        value used to convert probabilistic ROI values to a boolean mask for the ROI.</span>
 <span class="sd">    split_lr : bool</span>
 <span class="sd">        Whether to separate ROIs in to left and right hemispheres (e.g., &#39;V1&#39; becomes</span>
 <span class="sd">        &#39;V1_L&#39; and &#39;V1_R&#39;)</span>
@@ -567,6 +633,9 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">        If True (default), function returns a dictionary of ROI masks; if False, a volume</span>
 <span class="sd">        with integer indices for each ROI (similar to Freesurfer&#39;s aseg masks) and a</span>
 <span class="sd">        dictionary of how the indices map to ROI names are returned.</span>
+<span class="sd">    overlay_file : str or None</span>
+<span class="sd">        If None, use the default `overlays.svg` file. Otherwise, use the passed</span>
+<span class="sd">        overlay file to look for the ROIs.</span>
 
 <span class="sd">    Returns</span>
 <span class="sd">    -------</span>
@@ -592,19 +661,22 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
                    <span class="s1">&#39;cortical-liberal&#39;</span><span class="p">:</span><span class="s1">&#39;line_nearest&#39;</span><span class="p">}</span>
     <span class="c1"># Method</span>
     <span class="n">use_mapper</span> <span class="o">=</span> <span class="n">gm_sampler</span> <span class="ow">in</span> <span class="n">mapper_dict</span>
-    <span class="n">use_cortex_mask</span> <span class="o">=</span> <span class="p">(</span><span class="n">gm_sampler</span> <span class="ow">in</span> <span class="p">(</span><span class="s1">&#39;cortical&#39;</span><span class="p">,</span> <span class="s1">&#39;thick&#39;</span><span class="p">,</span> <span class="s1">&#39;thin&#39;</span><span class="p">))</span> <span class="ow">or</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">gm_sampler</span><span class="p">,</span> <span class="n">string_types</span><span class="p">)</span>
+    <span class="n">use_cortex_mask</span> <span class="o">=</span> <span class="p">(</span><span class="n">gm_sampler</span> <span class="ow">in</span> <span class="p">(</span><span class="s1">&#39;cortical&#39;</span><span class="p">,</span> <span class="s1">&#39;thick&#39;</span><span class="p">,</span> <span class="s1">&#39;thin&#39;</span><span class="p">))</span> <span class="ow">or</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">gm_sampler</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span>
     <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">use_mapper</span> <span class="ow">or</span> <span class="n">use_cortex_mask</span><span class="p">):</span>
         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">&#39;Unknown gray matter sampler (gm_sampler)!&#39;</span><span class="p">)</span>
     <span class="c1"># Initialize</span>
     <span class="n">roi_voxels</span> <span class="o">=</span> <span class="p">{}</span>
     <span class="n">pct_coverage</span> <span class="o">=</span> <span class="p">{}</span>
     <span class="c1"># Catch single-ROI input</span>
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">roi_list</span><span class="p">,</span> <span class="n">string_types</span><span class="p">):</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">roi_list</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
         <span class="n">roi_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">roi_list</span><span class="p">]</span>
     <span class="k">if</span> <span class="ow">not</span> <span class="n">return_dict</span><span class="p">:</span>
         <span class="n">split_lr</span> <span class="o">=</span> <span class="kc">True</span>
         <span class="k">if</span> <span class="n">use_mapper</span> <span class="ow">and</span> <span class="n">threshold</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;You must set a threshold for gm_mapper=&#39;</span><span class="si">%s</span><span class="s2">&#39; if you want an indexed volume output&quot;</span><span class="o">%</span><span class="n">gm_mapper</span><span class="p">)</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span>
+                <span class="sa">f</span><span class="s2">&quot;You must set a threshold for gm_sampler=</span><span class="si">{</span><span class="n">gm_sampler</span><span class="si">}</span><span class="s2"> if you want an &quot;</span>
+                <span class="s2">&quot;indexed volume output&quot;</span>
+            <span class="p">)</span>
     <span class="c1"># Start with vertices</span>
     <span class="k">if</span> <span class="n">roi_list</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="n">roi_verts</span> <span class="o">=</span> <span class="n">get_roi_verts</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">use_mapper</span><span class="p">,</span> <span class="n">overlay_file</span><span class="o">=</span><span class="n">overlay_file</span><span class="p">)</span>
@@ -629,7 +701,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="k">if</span> <span class="n">use_mapper</span><span class="p">:</span>
         <span class="n">mapper</span> <span class="o">=</span> <span class="n">get_mapper</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="n">mapper_dict</span><span class="p">[</span><span class="n">gm_sampler</span><span class="p">])</span>
     <span class="k">elif</span> <span class="n">use_cortex_mask</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">gm_sampler</span><span class="p">,</span> <span class="n">string_types</span><span class="p">):</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">gm_sampler</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
             <span class="n">cortex_mask</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_mask</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="n">gm_sampler</span><span class="p">)</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="n">cortex_mask</span> <span class="o">=</span> <span class="n">vox_dst</span> <span class="o">&lt;=</span> <span class="n">gm_sampler</span>
@@ -640,8 +712,8 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
                 <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;ROI </span><span class="si">{}</span><span class="s2"> not found...&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">roi</span><span class="p">))</span>
             <span class="k">continue</span>
         <span class="k">if</span> <span class="n">use_mapper</span><span class="p">:</span>
-            <span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">]</span> <span class="o">=</span> <span class="n">mapper</span><span class="o">.</span><span class="n">backwards</span><span class="p">(</span><span class="n">roi_verts</span><span class="p">[</span><span class="n">roi</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">))</span>
-            <span class="c1"># Optionally threshold probablistic values returned by mapper</span>
+            <span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">]</span> <span class="o">=</span> <span class="n">mapper</span><span class="o">.</span><span class="n">backwards</span><span class="p">(</span><span class="n">roi_verts</span><span class="p">[</span><span class="n">roi</span><span class="p">]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">float</span><span class="p">))</span>
+            <span class="c1"># Optionally threshold probabilistic values returned by mapper</span>
             <span class="k">if</span> <span class="n">threshold</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
                 <span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">]</span> <span class="o">=</span> <span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">]</span> <span class="o">&gt;</span> <span class="n">threshold</span>
             <span class="c1"># Check for partial / empty rois:</span>
@@ -675,23 +747,25 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
         <span class="k">for</span> <span class="n">roi</span> <span class="ow">in</span> <span class="n">roi_list</span><span class="p">:</span>
             <span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">][</span><span class="n">all_mask</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span>
     <span class="c1"># Split left / right hemispheres if desired</span>
-    <span class="c1"># There ought to be a more succinct way to do this - get_hemi_masks only does the cortical</span>
-    <span class="c1"># ribbon, and is not guaranteed to have all voxels in the cortex_mask specified in this fn</span>
     <span class="k">if</span> <span class="n">split_lr</span><span class="p">:</span>
-        <span class="n">left_verts</span><span class="p">,</span> <span class="n">right_verts</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;flat&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+        <span class="c1"># Use the fiducial surface because we need to have all vertices</span>
+        <span class="n">left_verts</span><span class="p">,</span> <span class="n">_</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;fiducial&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">nudge</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>  
         <span class="n">left_mask</span> <span class="o">=</span> <span class="n">vox_idx</span> <span class="o">&lt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">left_verts</span><span class="p">[</span><span class="mi">1</span><span class="p">]))</span>
         <span class="n">right_mask</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">logical_not</span><span class="p">(</span><span class="n">left_mask</span><span class="p">)</span>
         <span class="n">roi_voxels_lr</span> <span class="o">=</span> <span class="p">{}</span>
         <span class="k">for</span> <span class="n">roi</span> <span class="ow">in</span> <span class="n">roi_list</span><span class="p">:</span>
-            <span class="n">roi_voxels_lr</span><span class="p">[</span><span class="n">roi</span><span class="o">+</span><span class="s1">&#39;_L&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">])</span> <span class="c1"># &amp; left_mask</span>
-            <span class="n">roi_voxels_lr</span><span class="p">[</span><span class="n">roi</span><span class="o">+</span><span class="s1">&#39;_L&#39;</span><span class="p">][</span><span class="n">right_mask</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span> <span class="c1"># ?</span>
-            <span class="n">roi_voxels_lr</span><span class="p">[</span><span class="n">roi</span><span class="o">+</span><span class="s1">&#39;_R&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">])</span> <span class="c1"># &amp; right_mask</span>
-            <span class="n">roi_voxels_lr</span><span class="p">[</span><span class="n">roi</span><span class="o">+</span><span class="s1">&#39;_R&#39;</span><span class="p">][</span><span class="n">left_mask</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span> <span class="c1"># ?</span>
+            <span class="c1"># roi_voxels may contain float values if using a mapper, therefore we need</span>
+            <span class="c1"># to manually set the voxels in the other hemisphere to False. Then we let</span>
+            <span class="c1"># numpy do the conversion False -&gt; 0. </span>
+            <span class="n">roi_voxels_lr</span><span class="p">[</span><span class="n">roi</span> <span class="o">+</span> <span class="s1">&#39;_L&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">])</span>
+            <span class="n">roi_voxels_lr</span><span class="p">[</span><span class="n">roi</span> <span class="o">+</span> <span class="s1">&#39;_L&#39;</span><span class="p">][</span><span class="n">right_mask</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span>
+            <span class="n">roi_voxels_lr</span><span class="p">[</span><span class="n">roi</span> <span class="o">+</span> <span class="s1">&#39;_R&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">roi_voxels</span><span class="p">[</span><span class="n">roi</span><span class="p">])</span>
+            <span class="n">roi_voxels_lr</span><span class="p">[</span><span class="n">roi</span> <span class="o">+</span> <span class="s1">&#39;_R&#39;</span><span class="p">][</span><span class="n">left_mask</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span>
         <span class="n">output</span> <span class="o">=</span> <span class="n">roi_voxels_lr</span>
     <span class="k">else</span><span class="p">:</span>
         <span class="n">output</span> <span class="o">=</span> <span class="n">roi_voxels</span>
 
-    <span class="c1"># Check percent coverage / optionally cull emtpy ROIs</span>
+    <span class="c1"># Check percent coverage / optionally cull empty ROIs</span>
     <span class="k">for</span> <span class="n">roi</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">roi_list</span><span class="p">)</span><span class="o">-</span><span class="nb">set</span><span class="p">([</span><span class="s1">&#39;Cortex&#39;</span><span class="p">]):</span>
         <span class="k">if</span> <span class="n">pct_coverage</span><span class="p">[</span><span class="n">roi</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">100</span><span class="p">:</span>
             <span class="c1"># if not np.any(mask) : reject ROI</span>
@@ -720,8 +794,11 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
         <span class="n">idx_vol</span><span class="p">[</span><span class="n">left_mask</span><span class="p">]</span> <span class="o">*=</span> <span class="o">-</span><span class="mi">1</span>
         <span class="k">return</span> <span class="n">idx_vol</span><span class="p">,</span> <span class="n">idx_labels</span></div>
 
-<div class="viewcode-block" id="get_dropout"><a class="viewcode-back" href="../../generated/cortex.utils.get_dropout.html#cortex.utils.get_dropout">[docs]</a><span class="k">def</span> <span class="nf">get_dropout</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">power</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Create a dropout Volume showing where EPI signal</span>
+
+<div class="viewcode-block" id="get_dropout">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_dropout.html#cortex.utils.get_dropout">[docs]</a>
+<span class="k">def</span> <span class="nf">get_dropout</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">power</span><span class="o">=</span><span class="mi">20</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Create a dropout Volume showing where EPI signal</span>
 <span class="sd">    is very low.</span>
 
 <span class="sd">    Parameters</span>
@@ -738,7 +815,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">        Pycortex volume of low signal locations</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="n">xfm</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_xfm</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
-    <span class="n">rawdata</span> <span class="o">=</span> <span class="n">xfm</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float32</span><span class="p">)</span>
+    <span class="n">rawdata</span> <span class="o">=</span> <span class="n">xfm</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float32</span><span class="p">)</span>
 
     <span class="c1"># Collapse epi across time if it&#39;s 4D</span>
     <span class="k">if</span> <span class="n">rawdata</span><span class="o">.</span><span class="n">ndim</span> <span class="o">&gt;</span> <span class="mi">3</span><span class="p">:</span>
@@ -751,8 +828,11 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="kn">from</span> <span class="nn">.dataset</span> <span class="kn">import</span> <span class="n">Volume</span>
     <span class="k">return</span> <span class="n">Volume</span><span class="p">(</span><span class="n">normdata</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="make_movie"><a class="viewcode-back" href="../../generated/cortex.utils.make_movie.html#cortex.utils.make_movie">[docs]</a><span class="k">def</span> <span class="nf">make_movie</span><span class="p">(</span><span class="n">stim</span><span class="p">,</span> <span class="n">outfile</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="mi">15</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="s2">&quot;640x480&quot;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Makes an .ogv movie</span>
+
+<div class="viewcode-block" id="make_movie">
+<a class="viewcode-back" href="../../generated/cortex.utils.make_movie.html#cortex.utils.make_movie">[docs]</a>
+<span class="k">def</span> <span class="nf">make_movie</span><span class="p">(</span><span class="n">stim</span><span class="p">,</span> <span class="n">outfile</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="mi">15</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="s2">&quot;640x480&quot;</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Makes an .ogv movie</span>
 
 <span class="sd">    A simple wrapper for ffmpeg. Calls:</span>
 <span class="sd">    &quot;ffmpeg -r {fps} -i {infile} -b 4800k -g 30 -s {size} -vcodec libtheora {outfile}.ogv&quot;</span>
@@ -778,8 +858,11 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="n">fcmd</span> <span class="o">=</span> <span class="n">cmd</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">infile</span><span class="o">=</span><span class="n">stim</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="n">size</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="n">fps</span><span class="p">,</span> <span class="n">outfile</span><span class="o">=</span><span class="n">outfile</span><span class="p">)</span>
     <span class="n">sp</span><span class="o">.</span><span class="n">call</span><span class="p">(</span><span class="n">shlex</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">fcmd</span><span class="p">))</span></div>
 
-<div class="viewcode-block" id="vertex_to_voxel"><a class="viewcode-back" href="../../generated/cortex.utils.vertex_to_voxel.html#cortex.utils.vertex_to_voxel">[docs]</a><span class="k">def</span> <span class="nf">vertex_to_voxel</span><span class="p">(</span><span class="n">subject</span><span class="p">):</span>  <span class="c1"># Am I deprecated in favor of mappers??? Maybe?</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+
+<div class="viewcode-block" id="vertex_to_voxel">
+<a class="viewcode-back" href="../../generated/cortex.utils.vertex_to_voxel.html#cortex.utils.vertex_to_voxel">[docs]</a>
+<span class="k">def</span> <span class="nf">vertex_to_voxel</span><span class="p">(</span><span class="n">subject</span><span class="p">):</span>  <span class="c1"># Am I deprecated in favor of mappers??? Maybe?</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
 <span class="sd">    subject : str</span>
@@ -809,8 +892,9 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">all_verts</span></div>
 
 
+
 <span class="k">def</span> <span class="nf">_set_edge_distance_graph_attribute</span><span class="p">(</span><span class="n">graph</span><span class="p">,</span> <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;</span>
+<span class="w">    </span><span class="sd">&#39;&#39;&#39;</span>
 <span class="sd">    adds the attribute &#39;edge distance&#39; to a graph</span>
 <span class="sd">    &#39;&#39;&#39;</span>
     <span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
@@ -831,7 +915,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">get_shared_voxels</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">hemi</span><span class="o">=</span><span class="s2">&quot;both&quot;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">use_astar</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;Return voxels that are shared by multiple vertices, and for each such voxel,</span>
+<span class="w">    </span><span class="sd">&#39;&#39;&#39;Return voxels that are shared by multiple vertices, and for each such voxel,</span>
 <span class="sd">       also returns the mutually farthest pair of vertices mapping to the voxel</span>
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -841,10 +925,10 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">        Name of the transform</span>
 <span class="sd">    hemi : str, optional</span>
 <span class="sd">        Which hemisphere to return. For now, only &#39;lh&#39; or &#39;rh&#39;</span>
-<span class="sd">    merge : bool, optinal</span>
+<span class="sd">    merge : bool, optional</span>
 <span class="sd">        Join the hemispheres, if requesting both</span>
 <span class="sd">    use_astar: bool, optional</span>
-<span class="sd">        Toggle to decide whether to use A* seach or geodesic paths for the</span>
+<span class="sd">        Toggle to decide whether to use A* search or geodesic paths for the</span>
 <span class="sd">        shortest paths</span>
 
 <span class="sd">    Returns</span>
@@ -854,8 +938,8 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 <span class="sd">    farthest_pair[1])</span>
 <span class="sd">    &#39;&#39;&#39;</span>
 
-    <span class="kn">from</span> <span class="nn">scipy.sparse</span> <span class="kn">import</span> <span class="n">find</span> <span class="k">as</span> <span class="n">sparse_find</span>
     <span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>
+    <span class="kn">from</span> <span class="nn">scipy.sparse</span> <span class="kn">import</span> <span class="n">find</span> <span class="k">as</span> <span class="n">sparse_find</span>
     <span class="n">Lmask</span><span class="p">,</span> <span class="n">Rmask</span> <span class="o">=</span> <span class="n">get_mapper</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span><span class="o">.</span><span class="n">masks</span>  <span class="c1"># Get masks for left and right hemisphere</span>
     <span class="k">if</span> <span class="n">hemi</span> <span class="o">==</span> <span class="s1">&#39;both&#39;</span><span class="p">:</span>
         <span class="n">hemispheres</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;lh&#39;</span><span class="p">,</span> <span class="s1">&#39;rh&#39;</span><span class="p">]</span>
@@ -916,7 +1000,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">load_sparse_array</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">varname</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Load a numpy sparse array from an hdf file</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Load a numpy sparse array from an hdf file</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -938,7 +1022,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">save_sparse_array</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">varname</span><span class="p">,</span> <span class="n">mode</span><span class="o">=</span><span class="s1">&#39;a&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Save a numpy sparse array to an hdf file</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Save a numpy sparse array to an hdf file</span>
 
 <span class="sd">    Results in relatively smaller file size than numpy.savez</span>
 
@@ -969,8 +1053,10 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
         <span class="n">hf</span><span class="o">.</span><span class="n">create_dataset</span><span class="p">(</span><span class="n">varname</span> <span class="o">+</span> <span class="s1">&#39;_shape&#39;</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="n">data_</span><span class="o">.</span><span class="n">shape</span><span class="p">,</span> <span class="n">compression</span><span class="o">=</span><span class="s1">&#39;gzip&#39;</span><span class="p">)</span>
 
 
-<div class="viewcode-block" id="get_cmap"><a class="viewcode-back" href="../../generated/cortex.utils.get_cmap.html#cortex.utils.get_cmap">[docs]</a><span class="k">def</span> <span class="nf">get_cmap</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Gets a colormaps</span>
+<div class="viewcode-block" id="get_cmap">
+<a class="viewcode-back" href="../../generated/cortex.utils.get_cmap.html#cortex.utils.get_cmap">[docs]</a>
+<span class="k">def</span> <span class="nf">get_cmap</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Gets a colormaps</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -992,7 +1078,10 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
     <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">colormaps</span><span class="p">:</span>
         <span class="n">I</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">imread</span><span class="p">(</span><span class="n">colormaps</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
         <span class="n">cmap</span> <span class="o">=</span> <span class="n">colors</span><span class="o">.</span><span class="n">ListedColormap</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">squeeze</span><span class="p">(</span><span class="n">I</span><span class="p">))</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">cm</span><span class="o">.</span><span class="n">register_cmap</span><span class="p">(</span><span class="n">name</span><span class="p">,</span><span class="n">cmap</span><span class="p">)</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="n">plt</span><span class="o">.</span><span class="n">cm</span><span class="o">.</span><span class="n">register_cmap</span><span class="p">(</span><span class="n">name</span><span class="p">,</span><span class="n">cmap</span><span class="p">)</span>
+        <span class="k">except</span><span class="p">:</span>
+            <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Color map </span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2"> is already registered.&quot;</span><span class="p">)</span>
     <span class="k">else</span><span class="p">:</span>
         <span class="k">try</span><span class="p">:</span>
             <span class="n">cmap</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">cm</span><span class="o">.</span><span class="n">get_cmap</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
@@ -1000,35 +1089,41 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
             <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unkown color map!&#39;</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">cmap</span></div>
 
+
 <span class="k">def</span> <span class="nf">add_cmap</span><span class="p">(</span><span class="n">cmap</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">cmapdir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Add a colormap to pycortex</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Add a colormap to pycortex.</span>
 
 <span class="sd">    This stores a matplotlib colormap in the pycortex filestore, such that it can</span>
-<span class="sd">    be used in the webgl viewer in pycortex. See [] for more information about how</span>
-<span class="sd">    to generate colormaps in matplotlib</span>
+<span class="sd">    be used in the webgl viewer in pycortex. See </span>
+<span class="sd">    https://matplotlib.org/stable/users/explain/colors/colormap-manipulation.html </span>
+<span class="sd">    for more information about how to generate colormaps in matplotlib.</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
 <span class="sd">    cmap : matplotlib colormap</span>
 <span class="sd">        Color map to be saved</span>
-<span class="sd">    name :</span>
-<span class="sd">        Name for colormap, e.g. &#39;jet&#39;, &#39;blue_to_yellow&#39;, etc. This will be a file name,</span>
-<span class="sd">        so no weird characters. This name will also be used to specify this colormap in</span>
-<span class="sd">        future calls to cortex.quickflat.make_figure() or cortex.webgl.show()</span>
+<span class="sd">    name : str</span>
+<span class="sd">        Name for colormap, e.g. &#39;jet&#39;, &#39;blue_to_yellow&#39;, etc. The name will be used</span>
+<span class="sd">        to generate a filename for the colormap stored in the pycortex store, </span>
+<span class="sd">        so avoid illegal characters for a filename. This name will also be used to </span>
+<span class="sd">        specify this colormap in future calls to `cortex.quickflat.make_figure()`</span>
+<span class="sd">        or `cortex.webgl.show()`.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-    <span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">colors</span>
+
     <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">256</span><span class="p">)</span>
-    <span class="n">cmap_im</span> <span class="o">=</span> <span class="n">cmap</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span><span class="mi">256</span><span class="p">,</span><span class="mi">4</span><span class="p">))</span>
+    <span class="n">cmap_im</span> <span class="o">=</span> <span class="n">cmap</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">256</span><span class="p">,</span> <span class="mi">4</span><span class="p">))</span>
     <span class="k">if</span> <span class="n">cmapdir</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="c1"># Probably won&#39;t work due to permissions...</span>
-        <span class="n">cmapdir</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;webgl&#39;</span><span class="p">,</span> <span class="s1">&#39;colormaps&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">imsave</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmapdir</span><span class="p">,</span> <span class="n">name</span><span class="p">),</span> <span class="n">cmap_im</span><span class="p">)</span>
+        <span class="n">cmapdir</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;webgl&quot;</span><span class="p">,</span> <span class="s2">&quot;colormaps&quot;</span><span class="p">)</span>
+    <span class="c1"># Make sure name ends with png</span>
+    <span class="n">name</span> <span class="o">=</span> <span class="n">name</span> <span class="k">if</span> <span class="n">name</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">&quot;.png&quot;</span><span class="p">)</span> <span class="k">else</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">name</span><span class="si">}</span><span class="s2">.png&quot;</span>
+    <span class="n">plt</span><span class="o">.</span><span class="n">imsave</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmapdir</span><span class="p">,</span> <span class="n">name</span><span class="p">),</span> <span class="n">cmap_im</span><span class="p">,</span> <span class="nb">format</span><span class="o">=</span><span class="s2">&quot;png&quot;</span><span class="p">)</span>
 
 
 <span class="k">def</span> <span class="nf">download_subject</span><span class="p">(</span><span class="n">subject_id</span><span class="o">=</span><span class="s1">&#39;fsaverage&#39;</span><span class="p">,</span> <span class="n">url</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pycortex_store</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                      <span class="n">download_again</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Download subjects to pycortex store</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Download subjects to pycortex store</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -1079,7 +1174,7 @@ <h1>Source code for cortex.utils</h1><div class="highlight"><pre>
 
 
 <span class="k">def</span> <span class="nf">rotate_flatmap</span><span class="p">(</span><span class="n">surf_id</span><span class="p">,</span> <span class="n">theta</span><span class="p">,</span> <span class="n">plot</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Rotate flatmap to be less V-shaped</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Rotate flatmap to be less V-shaped</span>
 <span class="sd">    </span>
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -1178,7 +1273,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -1186,8 +1281,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -1201,11 +1296,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/volume.html b/_modules/cortex/volume.html
index d0760fb45..f94cc29c1 100644
--- a/_modules/cortex/volume.html
+++ b/_modules/cortex/volume.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.volume &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.volume &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -44,8 +43,10 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
 <span class="kn">from</span> <span class="nn">.database</span> <span class="kn">import</span> <span class="n">db</span>
 <span class="kn">from</span> <span class="nn">.xfm</span> <span class="kn">import</span> <span class="n">Transform</span>
 
-<div class="viewcode-block" id="unmask"><a class="viewcode-back" href="../../generated/cortex.volume.unmask.html#cortex.utils.unmask">[docs]</a><span class="k">def</span> <span class="nf">unmask</span><span class="p">(</span><span class="n">mask</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;unmask(mask, data)</span>
+<div class="viewcode-block" id="unmask">
+<a class="viewcode-back" href="../../generated/cortex.volume.unmask.html#cortex.utils.unmask">[docs]</a>
+<span class="k">def</span> <span class="nf">unmask</span><span class="p">(</span><span class="n">mask</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;unmask(mask, data)</span>
 
 <span class="sd">    Unmask the data, assuming it&#39;s been masked. Creates a volume</span>
 <span class="sd">    the same size as `mask` containing `data` at the locations</span>
@@ -91,6 +92,7 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
 
     <span class="k">return</span> <span class="n">output</span><span class="o">.</span><span class="n">squeeze</span><span class="p">()</span></div>
 
+
 <span class="k">def</span> <span class="nf">detrend_median</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">kernel</span><span class="o">=</span><span class="mi">15</span><span class="p">):</span>
     <span class="kn">from</span> <span class="nn">scipy.signal</span> <span class="kn">import</span> <span class="n">medfilt</span>
     <span class="n">lowfreq</span> <span class="o">=</span> <span class="n">medfilt</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="n">kernel</span><span class="p">,</span> <span class="n">kernel</span><span class="p">])</span>
@@ -121,8 +123,10 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
     <span class="k">else</span><span class="p">:</span>
         <span class="k">return</span> <span class="n">detrended</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="o">*</span><span class="n">s</span><span class="p">)</span>
 
-<div class="viewcode-block" id="mosaic"><a class="viewcode-back" href="../../generated/cortex.volume.mosaic.html#cortex.utils.mosaic">[docs]</a><span class="k">def</span> <span class="nf">mosaic</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">dim</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">show</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<div class="viewcode-block" id="mosaic">
+<a class="viewcode-back" href="../../generated/cortex.volume.mosaic.html#cortex.utils.mosaic">[docs]</a>
+<span class="k">def</span> <span class="nf">mosaic</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">dim</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">show</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Turns volume data into a mosaic, useful for quickly viewing volumetric data</span>
 <span class="sd">    with radiological convention (left side of figure is right side of subject).</span>
 
@@ -172,7 +176,10 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
 
     <span class="k">return</span> <span class="n">output</span><span class="p">,</span> <span class="p">(</span><span class="n">nwide</span><span class="p">,</span> <span class="n">ntall</span><span class="p">)</span></div>
 
-<div class="viewcode-block" id="show_slice"><a class="viewcode-back" href="../../generated/cortex.volume.show_slice.html#cortex.utils.show_slice">[docs]</a><span class="k">def</span> <span class="nf">show_slice</span><span class="p">(</span><span class="n">dataview</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+
+<div class="viewcode-block" id="show_slice">
+<a class="viewcode-back" href="../../generated/cortex.volume.show_slice.html#cortex.utils.show_slice">[docs]</a>
+<span class="k">def</span> <span class="nf">show_slice</span><span class="p">(</span><span class="n">dataview</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
     <span class="kn">import</span> <span class="nn">nibabel</span>
     <span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">cm</span>
     <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
@@ -186,7 +193,7 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
     <span class="n">imshow_kw</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="n">vmin</span><span class="o">=</span><span class="n">dataview</span><span class="o">.</span><span class="n">vmin</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="n">dataview</span><span class="o">.</span><span class="n">vmax</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="n">dataview</span><span class="o">.</span><span class="n">cmap</span><span class="p">)</span>
     <span class="n">imshow_kw</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">kwargs</span><span class="p">)</span>
 
-    <span class="n">anat</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s1">&#39;raw&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
+    <span class="n">anat</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s1">&#39;raw&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
     <span class="n">data</span> <span class="o">=</span> <span class="n">epi2anatspace</span><span class="p">(</span><span class="n">dataview</span><span class="p">)</span>
 
     <span class="n">data</span><span class="p">[</span><span class="n">data</span> <span class="o">&lt;</span> <span class="n">dataview</span><span class="o">.</span><span class="n">vmin</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
@@ -220,8 +227,11 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
     <span class="n">fig</span><span class="o">.</span><span class="n">canvas</span><span class="o">.</span><span class="n">mpl_connect</span><span class="p">(</span><span class="s1">&#39;button_press_event&#39;</span><span class="p">,</span> <span class="n">switchslice</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">fig</span></div>
 
-<div class="viewcode-block" id="show_mip"><a class="viewcode-back" href="../../generated/cortex.volume.show_mip.html#cortex.utils.show_mip">[docs]</a><span class="k">def</span> <span class="nf">show_mip</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;Display a maximum intensity projection for the data, using three subplots&#39;&#39;&#39;</span>
+
+<div class="viewcode-block" id="show_mip">
+<a class="viewcode-back" href="../../generated/cortex.volume.show_mip.html#cortex.utils.show_mip">[docs]</a>
+<span class="k">def</span> <span class="nf">show_mip</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&#39;&#39;&#39;Display a maximum intensity projection for the data, using three subplots&#39;&#39;&#39;</span>
     <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
     <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
     <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">221</span><span class="p">)</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="mi">0</span><span class="p">),</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
@@ -229,11 +239,14 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
     <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">223</span><span class="p">)</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="mi">2</span><span class="p">),</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
     <span class="k">return</span> <span class="n">fig</span></div>
 
-<div class="viewcode-block" id="show_glass"><a class="viewcode-back" href="../../generated/cortex.volume.show_glass.html#cortex.utils.show_glass">[docs]</a><span class="k">def</span> <span class="nf">show_glass</span><span class="p">(</span><span class="n">dataview</span><span class="p">,</span> <span class="n">pad</span><span class="o">=</span><span class="mi">10</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;Create a classic &quot;glass brain&quot; view of the data, with the outline&#39;&#39;&#39;</span>
+
+<div class="viewcode-block" id="show_glass">
+<a class="viewcode-back" href="../../generated/cortex.volume.show_glass.html#cortex.utils.show_glass">[docs]</a>
+<span class="k">def</span> <span class="nf">show_glass</span><span class="p">(</span><span class="n">dataview</span><span class="p">,</span> <span class="n">pad</span><span class="o">=</span><span class="mi">10</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&#39;&#39;&#39;Create a classic &quot;glass brain&quot; view of the data, with the outline&#39;&#39;&#39;</span>
     <span class="kn">import</span> <span class="nn">nibabel</span>
     <span class="n">nib</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s1">&#39;fiducial&#39;</span><span class="p">)</span>
-    <span class="n">mask</span> <span class="o">=</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span>
+    <span class="n">mask</span> <span class="o">=</span> <span class="n">nib</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span>
 
     <span class="n">left</span><span class="p">,</span> <span class="n">right</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nonzero</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">mask</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="mi">0</span><span class="p">)))[</span><span class="mi">0</span><span class="p">][[</span><span class="mi">0</span><span class="p">,</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
     <span class="n">front</span><span class="p">,</span> <span class="n">back</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nonzero</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">mask</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="mi">1</span><span class="p">)))[</span><span class="mi">0</span><span class="p">][[</span><span class="mi">0</span><span class="p">,</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
@@ -245,8 +258,11 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
     <span class="c1">#too much work for something we&#39;ll never use</span>
     <span class="k">raise</span> <span class="ne">NotImplementedError</span></div>
 
-<div class="viewcode-block" id="epi2anatspace"><a class="viewcode-back" href="../../generated/cortex.volume.epi2anatspace.html#cortex.utils.epi2anatspace">[docs]</a><span class="k">def</span> <span class="nf">epi2anatspace</span><span class="p">(</span><span class="n">volumedata</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Resample an epi volume data into anatomical space using scipy.</span>
+
+<div class="viewcode-block" id="epi2anatspace">
+<a class="viewcode-back" href="../../generated/cortex.volume.epi2anatspace.html#cortex.utils.epi2anatspace">[docs]</a>
+<span class="k">def</span> <span class="nf">epi2anatspace</span><span class="p">(</span><span class="n">volumedata</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resample an epi volume data into anatomical space using scipy.</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -267,8 +283,8 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
     <span class="n">anat</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">volumedata</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;raw&quot;</span><span class="p">)</span>
     <span class="n">xfm</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_xfm</span><span class="p">(</span><span class="n">volumedata</span><span class="o">.</span><span class="n">subject</span><span class="p">,</span> <span class="n">volumedata</span><span class="o">.</span><span class="n">xfmname</span><span class="p">,</span> <span class="s2">&quot;coord&quot;</span><span class="p">)</span>
 
-    <span class="c1">#allxfm =  Transform(anat.get_affine(), anat.shape).inv * xfm.inv</span>
-    <span class="n">allxfm</span> <span class="o">=</span> <span class="n">xfm</span> <span class="o">*</span> <span class="n">Transform</span><span class="p">(</span><span class="n">anat</span><span class="o">.</span><span class="n">get_affine</span><span class="p">(),</span> <span class="n">anat</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
+    <span class="c1">#allxfm =  Transform(anat.affine, anat.shape).inv * xfm.inv</span>
+    <span class="n">allxfm</span> <span class="o">=</span> <span class="n">xfm</span> <span class="o">*</span> <span class="n">Transform</span><span class="p">(</span><span class="n">anat</span><span class="o">.</span><span class="n">affine</span><span class="p">,</span> <span class="n">anat</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
 
     <span class="n">rotpart</span> <span class="o">=</span> <span class="n">allxfm</span><span class="o">.</span><span class="n">xfm</span><span class="p">[:</span><span class="mi">3</span><span class="p">,</span> <span class="p">:</span><span class="mi">3</span><span class="p">]</span>
     <span class="n">transpart</span> <span class="o">=</span> <span class="n">allxfm</span><span class="o">.</span><span class="n">xfm</span><span class="p">[:</span><span class="mi">3</span><span class="p">,</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
@@ -276,8 +292,11 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
                             <span class="n">offset</span><span class="o">=</span><span class="n">transpart</span><span class="p">,</span> <span class="n">output_shape</span><span class="o">=</span><span class="n">anat</span><span class="o">.</span><span class="n">shape</span><span class="p">[::</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span>
                             <span class="n">cval</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="n">order</span><span class="p">)</span><span class="o">.</span><span class="n">T</span></div>
 
-<div class="viewcode-block" id="anat2epispace"><a class="viewcode-back" href="../../generated/cortex.volume.anat2epispace.html#cortex.utils.anat2epispace">[docs]</a><span class="k">def</span> <span class="nf">anat2epispace</span><span class="p">(</span><span class="n">anatdata</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Resamples data from anatomical space into epi space</span>
+
+<div class="viewcode-block" id="anat2epispace">
+<a class="viewcode-back" href="../../generated/cortex.volume.anat2epispace.html#cortex.utils.anat2epispace">[docs]</a>
+<span class="k">def</span> <span class="nf">anat2epispace</span><span class="p">(</span><span class="n">anatdata</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resamples data from anatomical space into epi space</span>
 <span class="sd">    </span>
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -299,8 +318,8 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
     <span class="n">anatref</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_anat</span><span class="p">(</span><span class="n">subject</span><span class="p">)</span>
     <span class="n">target</span> <span class="o">=</span> <span class="n">db</span><span class="o">.</span><span class="n">get_xfm</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="s2">&quot;coord&quot;</span><span class="p">)</span>
 
-    <span class="n">allxfm</span> <span class="o">=</span>  <span class="n">Transform</span><span class="p">(</span><span class="n">anatref</span><span class="o">.</span><span class="n">get_affine</span><span class="p">(),</span> <span class="n">anatref</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">inv</span> <span class="o">*</span> <span class="n">target</span><span class="o">.</span><span class="n">inv</span>
-    <span class="c1">#allxfm = xfm * Transform(anat.get_affine(), anat.shape)</span>
+    <span class="n">allxfm</span> <span class="o">=</span>  <span class="n">Transform</span><span class="p">(</span><span class="n">anatref</span><span class="o">.</span><span class="n">affine</span><span class="p">,</span> <span class="n">anatref</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">inv</span> <span class="o">*</span> <span class="n">target</span><span class="o">.</span><span class="n">inv</span>
+    <span class="c1">#allxfm = xfm * Transform(anat.affine, anat.shape)</span>
 
     <span class="n">rotpart</span> <span class="o">=</span> <span class="n">allxfm</span><span class="o">.</span><span class="n">xfm</span><span class="p">[:</span><span class="mi">3</span><span class="p">,</span> <span class="p">:</span><span class="mi">3</span><span class="p">]</span>
     <span class="n">transpart</span> <span class="o">=</span> <span class="n">allxfm</span><span class="o">.</span><span class="n">xfm</span><span class="p">[:</span><span class="mi">3</span><span class="p">,</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
@@ -308,8 +327,11 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">affine_transform</span><span class="p">(</span><span class="n">anatdata</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">rotpart</span><span class="p">,</span> <span class="n">offset</span><span class="o">=</span><span class="n">transpart</span><span class="p">,</span> <span class="n">output_shape</span><span class="o">=</span><span class="n">target</span><span class="o">.</span><span class="n">shape</span><span class="p">[::</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">cval</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="n">order</span><span class="p">)</span><span class="o">.</span><span class="n">T</span></div>
 
 
-<div class="viewcode-block" id="epi2anatspace_fsl"><a class="viewcode-back" href="../../generated/cortex.volume.epi2anatspace_fsl.html#cortex.utils.epi2anatspace_fsl">[docs]</a><span class="k">def</span> <span class="nf">epi2anatspace_fsl</span><span class="p">(</span><span class="n">volumedata</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Resamples epi-space [data] into the anatomical space for the given [subject]</span>
+
+<div class="viewcode-block" id="epi2anatspace_fsl">
+<a class="viewcode-back" href="../../generated/cortex.volume.epi2anatspace_fsl.html#cortex.utils.epi2anatspace_fsl">[docs]</a>
+<span class="k">def</span> <span class="nf">epi2anatspace_fsl</span><span class="p">(</span><span class="n">volumedata</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resamples epi-space [data] into the anatomical space for the given [subject]</span>
 <span class="sd">    using the given transformation [xfm].</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="c1">#This function is currently broken! do not use it!</span>
@@ -336,7 +358,7 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
             <span class="n">xfmh</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="s2">&quot;</span><span class="si">%0.5f</span><span class="s2">&quot;</span><span class="o">%</span><span class="n">f</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">ll</span><span class="p">])</span><span class="o">+</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span>
 
     <span class="c1">## Save out data into nifti file</span>
-    <span class="n">datafile</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">xfm</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_affine</span><span class="p">(),</span> <span class="n">xfm</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_header</span><span class="p">())</span>
+    <span class="n">datafile</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">xfm</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">affine</span><span class="p">,</span> <span class="n">xfm</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">header</span><span class="p">)</span>
     <span class="n">datafilename</span> <span class="o">=</span> <span class="n">tempfile</span><span class="o">.</span><span class="n">mktemp</span><span class="p">(</span><span class="s2">&quot;.nii&quot;</span><span class="p">)</span>
     <span class="n">nibabel</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">datafile</span><span class="p">,</span> <span class="n">datafilename</span><span class="p">)</span>
 
@@ -352,15 +374,18 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
                      <span class="s2">&quot;-out&quot;</span><span class="p">,</span> <span class="n">outfilename</span><span class="p">])</span>
 
     <span class="c1">## Load resliced image</span>
-    <span class="n">outdata</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">outfilename</span><span class="o">+</span><span class="s2">&quot;.gz&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
+    <span class="n">outdata</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">outfilename</span><span class="o">+</span><span class="s2">&quot;.gz&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
     <span class="c1">## Clean up</span>
     <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">outfilename</span><span class="o">+</span><span class="s2">&quot;.gz&quot;</span><span class="p">)</span>
     <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">datafilename</span><span class="p">)</span>
     <span class="c1">## Done!</span>
     <span class="k">return</span> <span class="n">outdata</span></div>
 
-<div class="viewcode-block" id="anat2epispace_fsl"><a class="viewcode-back" href="../../generated/cortex.volume.anat2epispace_fsl.html#cortex.utils.anat2epispace_fsl">[docs]</a><span class="k">def</span> <span class="nf">anat2epispace_fsl</span><span class="p">(</span><span class="n">data</span><span class="p">,</span><span class="n">subject</span><span class="p">,</span><span class="n">xfmname</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Resamples anat-space data into the epi space for the given [subject]</span>
+
+<div class="viewcode-block" id="anat2epispace_fsl">
+<a class="viewcode-back" href="../../generated/cortex.volume.anat2epispace_fsl.html#cortex.utils.anat2epispace_fsl">[docs]</a>
+<span class="k">def</span> <span class="nf">anat2epispace_fsl</span><span class="p">(</span><span class="n">data</span><span class="p">,</span><span class="n">subject</span><span class="p">,</span><span class="n">xfmname</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Resamples anat-space data into the epi space for the given [subject]</span>
 <span class="sd">    and transformation [xfm] </span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="kn">import</span> <span class="nn">tempfile</span>
@@ -379,7 +404,7 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
             <span class="n">xfmh</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="s2">&quot;</span><span class="si">%0.5f</span><span class="s2">&quot;</span><span class="o">%</span><span class="n">f</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">ll</span><span class="p">])</span><span class="o">+</span><span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">)</span>
 
     <span class="c1">## Save out data into nifti file</span>
-    <span class="n">datafile</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">anatNII</span><span class="o">.</span><span class="n">get_affine</span><span class="p">(),</span> <span class="n">anatNII</span><span class="o">.</span><span class="n">get_header</span><span class="p">())</span>
+    <span class="n">datafile</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">Nifti1Image</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">T</span><span class="p">,</span> <span class="n">anatNII</span><span class="o">.</span><span class="n">affine</span><span class="p">,</span> <span class="n">anatNII</span><span class="o">.</span><span class="n">header</span><span class="p">)</span>
     <span class="n">datafilename</span> <span class="o">=</span> <span class="n">tempfile</span><span class="o">.</span><span class="n">mktemp</span><span class="p">(</span><span class="s2">&quot;.nii&quot;</span><span class="p">)</span>
     <span class="n">nibabel</span><span class="o">.</span><span class="n">save</span><span class="p">(</span><span class="n">datafile</span><span class="p">,</span> <span class="n">datafilename</span><span class="p">)</span>
 
@@ -395,13 +420,14 @@ <h1>Source code for cortex.volume</h1><div class="highlight"><pre>
                      <span class="s2">&quot;-applyxfm&quot;</span><span class="p">])</span>
 
     <span class="c1">## Load resliced image</span>
-    <span class="n">outdata</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">outfilename</span><span class="o">+</span><span class="s2">&quot;.gz&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
+    <span class="n">outdata</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">outfilename</span><span class="o">+</span><span class="s2">&quot;.gz&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
     <span class="c1">## Clean up</span>
     <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">outfilename</span><span class="o">+</span><span class="s2">&quot;.gz&quot;</span><span class="p">)</span>
     <span class="n">os</span><span class="o">.</span><span class="n">remove</span><span class="p">(</span><span class="n">datafilename</span><span class="p">)</span>
     <span class="c1">## Done!</span>
     <span class="k">return</span> <span class="n">outdata</span></div>
 
+
 <span class="k">def</span> <span class="nf">fslview</span><span class="p">(</span><span class="o">*</span><span class="n">ims</span><span class="p">):</span>
     <span class="kn">import</span> <span class="nn">tempfile</span>
     <span class="kn">import</span> <span class="nn">subprocess</span>
@@ -470,7 +496,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -478,8 +504,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -493,11 +519,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/webgl/view.html b/_modules/cortex/webgl/view.html
index ddc5c3095..cf33a17d8 100644
--- a/_modules/cortex/webgl/view.html
+++ b/_modules/cortex/webgl/view.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.webgl.view &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js"></script>
-    <script src="../../../_static/jquery.js"></script>
-    <script src="../../../_static/underscore.js"></script>
-    <script src="../../../_static/doctools.js"></script>
+    <title>cortex.webgl.view &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../../genindex.html" />
     <link rel="search" title="Search" href="../../../search.html" />
    
   <link rel="stylesheet" href="../../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -35,43 +34,41 @@
           <div class="body" role="main">
             
   <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
-<span></span><span class="kn">import</span> <span class="nn">six</span>
-<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">glob</span>
+<span></span><span class="kn">import</span> <span class="nn">binascii</span>
 <span class="kn">import</span> <span class="nn">copy</span>
-<span class="kn">import</span> <span class="nn">json</span>
-<span class="kn">import</span> <span class="nn">time</span>
-<span class="k">if</span> <span class="n">six</span><span class="o">.</span><span class="n">PY2</span><span class="p">:</span>  <span class="c1"># python 2</span>
-    <span class="kn">from</span> <span class="nn">Queue</span> <span class="kn">import</span> <span class="n">Queue</span>
-    <span class="kn">from</span> <span class="nn">ConfigParser</span> <span class="kn">import</span> <span class="n">NoOptionError</span>
-<span class="k">else</span><span class="p">:</span>  <span class="c1"># python 3</span>
-    <span class="kn">from</span> <span class="nn">queue</span> <span class="kn">import</span> <span class="n">Queue</span>
-    <span class="kn">from</span> <span class="nn">configparser</span> <span class="kn">import</span> <span class="n">NoOptionError</span>
-<span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">random</span>
 <span class="kn">import</span> <span class="nn">functools</span>
-<span class="kn">import</span> <span class="nn">binascii</span>
+<span class="kn">import</span> <span class="nn">glob</span>
+<span class="kn">import</span> <span class="nn">json</span>
 <span class="kn">import</span> <span class="nn">mimetypes</span>
+<span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">import</span> <span class="nn">random</span>
+<span class="kn">import</span> <span class="nn">shutil</span>
 <span class="kn">import</span> <span class="nn">threading</span>
+<span class="kn">import</span> <span class="nn">time</span>
 <span class="kn">import</span> <span class="nn">warnings</span>
 <span class="kn">import</span> <span class="nn">webbrowser</span>
+<span class="kn">from</span> <span class="nn">configparser</span> <span class="kn">import</span> <span class="n">NoOptionError</span>
+
+<span class="c1"># Now assumes python 3</span>
+<span class="kn">from</span> <span class="nn">queue</span> <span class="kn">import</span> <span class="n">Queue</span>
+
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">tornado</span> <span class="kn">import</span> <span class="n">web</span>
 
-<span class="kn">from</span> <span class="nn">.FallbackLoader</span> <span class="kn">import</span> <span class="n">FallbackLoader</span>
-<span class="kn">from</span> <span class="nn">..</span> <span class="kn">import</span> <span class="n">utils</span><span class="p">,</span> <span class="n">options</span><span class="p">,</span> <span class="n">volume</span><span class="p">,</span> <span class="n">dataset</span>
+<span class="kn">from</span> <span class="nn">..</span> <span class="kn">import</span> <span class="n">dataset</span><span class="p">,</span> <span class="n">options</span><span class="p">,</span> <span class="n">utils</span><span class="p">,</span> <span class="n">volume</span>
 <span class="kn">from</span> <span class="nn">..database</span> <span class="kn">import</span> <span class="n">db</span>
 <span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">serve</span>
 <span class="kn">from</span> <span class="nn">.data</span> <span class="kn">import</span> <span class="n">Package</span>
+<span class="kn">from</span> <span class="nn">.FallbackLoader</span> <span class="kn">import</span> <span class="n">FallbackLoader</span>
 
 <span class="k">try</span><span class="p">:</span>
     <span class="n">cmapdir</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;webgl&#39;</span><span class="p">,</span> <span class="s1">&#39;colormaps&#39;</span><span class="p">)</span>
     <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">cmapdir</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Colormap directory (</span><span class="si">%s</span><span class="s2">) does not exits&quot;</span><span class="o">%</span><span class="n">cmapdir</span><span class="p">)</span>
+        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Colormap directory (</span><span class="si">%s</span><span class="s2">) does not exist&quot;</span><span class="o">%</span><span class="n">cmapdir</span><span class="p">)</span>
 <span class="k">except</span> <span class="n">NoOptionError</span><span class="p">:</span>
     <span class="n">cmapdir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;basic&quot;</span><span class="p">,</span> <span class="s2">&quot;filestore&quot;</span><span class="p">),</span> <span class="s2">&quot;colormaps&quot;</span><span class="p">)</span>
     <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">cmapdir</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Colormap directory was not defined in the config file and the default (</span><span class="si">%s</span><span class="s2">) does not exits&quot;</span><span class="o">%</span><span class="n">cmapdir</span><span class="p">)</span>
+        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Colormap directory was not defined in the config file and the default (</span><span class="si">%s</span><span class="s2">) does not exist&quot;</span><span class="o">%</span><span class="n">cmapdir</span><span class="p">)</span>
 
 <span class="n">domain_name</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;webgl&quot;</span><span class="p">,</span> <span class="s2">&quot;domain_name&quot;</span><span class="p">)</span>
 
@@ -79,13 +76,15 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
 <span class="n">colormaps</span> <span class="o">=</span> <span class="p">[(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cm</span><span class="p">)[</span><span class="mi">1</span><span class="p">])[</span><span class="mi">0</span><span class="p">],</span> <span class="n">serve</span><span class="o">.</span><span class="n">make_base64</span><span class="p">(</span><span class="n">cm</span><span class="p">))</span>
              <span class="k">for</span> <span class="n">cm</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">colormaps</span><span class="p">)]</span>
 
-<div class="viewcode-block" id="make_static"><a class="viewcode-back" href="../../../generated/cortex.webgl.make_static.html#cortex.webgl.make_static">[docs]</a><span class="k">def</span> <span class="nf">make_static</span><span class="p">(</span><span class="n">outpath</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">types</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;inflated&quot;</span><span class="p">,),</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s2">&quot;RdBu_r&quot;</span><span class="p">,</span>
+<div class="viewcode-block" id="make_static">
+<a class="viewcode-back" href="../../../generated/cortex.webgl.make_static.html#cortex.webgl.make_static">[docs]</a>
+<span class="k">def</span> <span class="nf">make_static</span><span class="p">(</span><span class="n">outpath</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">types</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;inflated&quot;</span><span class="p">,),</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s2">&quot;RdBu_r&quot;</span><span class="p">,</span>
                 <span class="n">template</span><span class="o">=</span><span class="s2">&quot;static.html&quot;</span><span class="p">,</span> <span class="n">layout</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">anonymize</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">overlays_available</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
                 <span class="n">html_embed</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">overlays_visible</span><span class="o">=</span><span class="p">(</span><span class="s1">&#39;rois&#39;</span><span class="p">,</span> <span class="s1">&#39;sulci&#39;</span><span class="p">),</span> <span class="n">labels_visible</span><span class="o">=</span><span class="p">(</span><span class="s1">&#39;rois&#39;</span><span class="p">,</span> <span class="p">),</span>
                 <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">copy_ctmfiles</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">title</span><span class="o">=</span><span class="s1">&#39;Brain&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Creates a static webGL MRI viewer in your filesystem so that it can easily</span>
-<span class="sd">    be posted publically for sharing or just saved for later viewing.</span>
+<span class="sd">    be posted publicly for sharing or just saved for later viewing.</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -104,7 +103,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
 <span class="sd">        Whether to rename CTM and SVG files generically, for public distribution.</span>
 <span class="sd">        Default False</span>
 <span class="sd">    overlays_available : tuple, optional</span>
-<span class="sd">        Overlays availble in the viewer. If None, then all overlay layers of the</span>
+<span class="sd">        Overlays available in the viewer. If None, then all overlay layers of the</span>
 <span class="sd">        svg file will be potentially available in the viewer (whether initially</span>
 <span class="sd">        visible or not). This provides the option to include, e.g., only a subset</span>
 <span class="sd">        of layers for a given static viewer.</span>
@@ -141,6 +140,10 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
 <span class="sd">    title : str, optional</span>
 <span class="sd">        The title that is displayed on the viewer website when it is loaded in</span>
 <span class="sd">        a browser.</span>
+<span class="sd">    layout : None or list of (int, int)</span>
+<span class="sd">        The layout of the viewer subwindows for showing multiple subjects, passed to</span>
+<span class="sd">        the template generator. </span>
+<span class="sd">        Default to None, corresponding to no subwindows.</span>
 
 <span class="sd">    Notes</span>
 <span class="sd">    -----</span>
@@ -172,8 +175,6 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
     <span class="n">package</span><span class="o">.</span><span class="n">reorder</span><span class="p">(</span><span class="n">ctms</span><span class="p">)</span>
 
     <span class="n">db</span><span class="o">.</span><span class="n">auxfile</span> <span class="o">=</span> <span class="kc">None</span>
-    <span class="k">if</span> <span class="n">layout</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">layout</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">)][</span><span class="nb">len</span><span class="p">(</span><span class="n">subjects</span><span class="p">)]</span>
 
     <span class="c1">## Rename files to anonymize</span>
     <span class="n">submap</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
@@ -272,12 +273,19 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
             <span class="n">htmlfile</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">html</span><span class="p">)</span></div>
 
 
-<div class="viewcode-block" id="show"><a class="viewcode-back" href="../../../generated/cortex.webgl.show.html#cortex.webgl.show">[docs]</a><span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">types</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;inflated&quot;</span><span class="p">,</span> <span class="p">),</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;RdBu_r&#39;</span><span class="p">,</span> <span class="n">layout</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+
+<div class="viewcode-block" id="show">
+<a class="viewcode-back" href="../../../generated/cortex.webgl.show.html#cortex.webgl.show">[docs]</a>
+<span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">types</span><span class="o">=</span><span class="p">(</span><span class="s2">&quot;inflated&quot;</span><span class="p">,</span> <span class="p">),</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;RdBu_r&#39;</span><span class="p">,</span> <span class="n">layout</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
          <span class="n">autoclose</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">open_browser</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">port</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">pickerfun</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
          <span class="n">template</span><span class="o">=</span><span class="s2">&quot;mixer.html&quot;</span><span class="p">,</span> <span class="n">overlays_available</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
          <span class="n">overlays_visible</span><span class="o">=</span><span class="p">(</span><span class="s1">&#39;rois&#39;</span><span class="p">,</span> <span class="s1">&#39;sulci&#39;</span><span class="p">),</span> <span class="n">labels_visible</span><span class="o">=</span><span class="p">(</span><span class="s1">&#39;rois&#39;</span><span class="p">,</span> <span class="p">),</span>
-         <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">title</span><span class="o">=</span><span class="s1">&#39;Brain&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+         <span class="n">overlay_file</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+         <span class="n">curvature_brightness</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+         <span class="n">curvature_smoothness</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+         <span class="n">curvature_contrast</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+         <span class="n">title</span><span class="o">=</span><span class="s1">&#39;Brain&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Creates a webGL MRI viewer that is dynamically served by a tornado server</span>
 <span class="sd">    running inside the current python process.</span>
 
@@ -297,7 +305,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
 <span class="sd">    port : int or None, optional</span>
 <span class="sd">        The port that will be used by the server. If None, a random port will be</span>
 <span class="sd">        selected from the range 1024-65536. Default None</span>
-<span class="sd">    pickerfun : funcion or None, optional</span>
+<span class="sd">    pickerfun : function or None, optional</span>
 <span class="sd">        Should be a function that takes two arguments, a voxel index and a vertex</span>
 <span class="sd">        index. Is called whenever a location on the surface is clicked in the</span>
 <span class="sd">        viewer. This can be used to print information about individual voxels or</span>
@@ -328,12 +336,22 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
 <span class="sd">    overlay_file : str or None, optional</span>
 <span class="sd">        Custom overlays.svg file to use instead of the default one for this</span>
 <span class="sd">        subject (if not None). Default None.</span>
+<span class="sd">    curvature_brightness : float or None, optional</span>
+<span class="sd">        Brightness of curvature overlay. Default None, which uses the value</span>
+<span class="sd">        specified in the config file.</span>
+<span class="sd">    curvature_smoothness : float or None, optional</span>
+<span class="sd">        Smoothness of curvature overlay. Default None, which uses the value</span>
+<span class="sd">        specified in the config file.</span>
+<span class="sd">    curvature_contrast : float or None, optional</span>
+<span class="sd">        Contrast of curvature overlay. Default None, which uses the value</span>
+<span class="sd">        specified in the config file.</span>
 <span class="sd">    title : str, optional</span>
 <span class="sd">        The title that is displayed on the viewer website when it is loaded in</span>
 <span class="sd">        a browser.</span>
-<span class="sd">    layout : (int, int), optional</span>
-<span class="sd">        The layout of the viewer subwindows for showing multiple subjects.</span>
-<span class="sd">        Default None, which selects the layout based on the number of subjects.</span>
+<span class="sd">    layout : None or list of (int, int), optional</span>
+<span class="sd">        The layout of the viewer subwindows for showing multiple subjects, passed to</span>
+<span class="sd">        the template generator.</span>
+<span class="sd">        Default None, corresponding to no subwindows.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="c1"># populate default webshow args</span>
@@ -370,8 +388,6 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
     <span class="n">subjectjs</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="nb">dict</span><span class="p">((</span><span class="n">subj</span><span class="p">,</span> <span class="s2">&quot;ctm/</span><span class="si">%s</span><span class="s2">/&quot;</span><span class="o">%</span><span class="n">subj</span><span class="p">)</span> <span class="k">for</span> <span class="n">subj</span> <span class="ow">in</span> <span class="n">subjects</span><span class="p">))</span>
     <span class="n">db</span><span class="o">.</span><span class="n">auxfile</span> <span class="o">=</span> <span class="kc">None</span>
 
-    <span class="k">if</span> <span class="n">layout</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">layout</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">),</span> <span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">2</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">),</span> <span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">3</span><span class="p">)][</span><span class="nb">len</span><span class="p">(</span><span class="n">subjects</span><span class="p">)]</span>
 
     <span class="n">linear</span> <span class="o">=</span> <span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">m</span><span class="p">:</span> <span class="p">(</span><span class="mf">1.</span><span class="o">-</span><span class="n">m</span><span class="p">)</span><span class="o">*</span><span class="n">x</span> <span class="o">+</span> <span class="n">m</span><span class="o">*</span><span class="n">y</span>
     <span class="n">mixes</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span>
@@ -386,9 +402,12 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
     <span class="n">my_viewopts</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">items</span><span class="p">(</span><span class="s1">&#39;webgl_viewopts&#39;</span><span class="p">))</span>
     <span class="n">my_viewopts</span><span class="p">[</span><span class="s1">&#39;overlays_visible&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">overlays_visible</span>
     <span class="n">my_viewopts</span><span class="p">[</span><span class="s1">&#39;labels_visible&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">labels_visible</span>
-    <span class="n">my_viewopts</span><span class="p">[</span><span class="s1">&#39;brightness&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;curvature&#39;</span><span class="p">,</span> <span class="s1">&#39;brightness&#39;</span><span class="p">)</span>
-    <span class="n">my_viewopts</span><span class="p">[</span><span class="s1">&#39;smoothness&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;curvature&#39;</span><span class="p">,</span> <span class="s1">&#39;webgl_smooth&#39;</span><span class="p">)</span>
-    <span class="n">my_viewopts</span><span class="p">[</span><span class="s1">&#39;contrast&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;curvature&#39;</span><span class="p">,</span> <span class="s1">&#39;contrast&#39;</span><span class="p">)</span>
+    <span class="n">my_viewopts</span><span class="p">[</span><span class="s1">&#39;brightness&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;curvature&#39;</span><span class="p">,</span> <span class="s1">&#39;brightness&#39;</span><span class="p">)</span> \
+        <span class="k">if</span> <span class="n">curvature_brightness</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">curvature_brightness</span>
+    <span class="n">my_viewopts</span><span class="p">[</span><span class="s1">&#39;smoothness&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;curvature&#39;</span><span class="p">,</span> <span class="s1">&#39;webgl_smooth&#39;</span><span class="p">)</span> \
+        <span class="k">if</span> <span class="n">curvature_smoothness</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">curvature_smoothness</span>
+    <span class="n">my_viewopts</span><span class="p">[</span><span class="s1">&#39;contrast&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;curvature&#39;</span><span class="p">,</span> <span class="s1">&#39;contrast&#39;</span><span class="p">)</span> \
+        <span class="k">if</span> <span class="n">curvature_contrast</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">curvature_contrast</span>
 
     <span class="k">for</span> <span class="n">sec</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">sections</span><span class="p">():</span>
         <span class="k">if</span> <span class="s1">&#39;paths&#39;</span> <span class="ow">in</span> <span class="n">sec</span> <span class="ow">or</span> <span class="s1">&#39;labels&#39;</span> <span class="ow">in</span> <span class="n">sec</span><span class="p">:</span>
@@ -492,7 +511,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
     <span class="k">class</span> <span class="nc">JSMixer</span><span class="p">(</span><span class="n">serve</span><span class="o">.</span><span class="n">JSProxy</span><span class="p">):</span>
         <span class="nd">@property</span>
         <span class="k">def</span> <span class="nf">view_props</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;An enumerated list of settable properties for views. </span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;An enumerated list of settable properties for views. </span>
 <span class="sd">            There may be a way to get this from the javascript object, </span>
 <span class="sd">            but I (ML) don&#39;t know how.</span>
 
@@ -504,10 +523,11 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
 <span class="sd">                &#39;visL&#39;, &#39;visR&#39;, &#39;alpha&#39;, &#39;rotationR&#39;, &#39;rotationL&#39;, &#39;projection&#39;,</span>
 <span class="sd">                &#39;volume_vis&#39;, &#39;frame&#39;, &#39;slices&#39;]</span>
 <span class="sd">            &quot;&quot;&quot;</span>
-
-            <span class="n">_camera_props</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;camera.</span><span class="si">%s</span><span class="s1">&#39;</span><span class="o">%</span><span class="n">k</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">ui</span><span class="o">.</span><span class="n">camera</span><span class="o">.</span><span class="n">_controls</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">keys</span><span class="p">()]</span>
-            <span class="n">_subject</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ui</span><span class="o">.</span><span class="n">surface</span><span class="o">.</span><span class="n">_folders</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">_surface</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ui</span><span class="o">.</span><span class="n">surface</span><span class="p">,</span> <span class="n">_subject</span><span class="p">)</span>
+            <span class="n">camera</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ui</span><span class="p">,</span> <span class="s2">&quot;camera&quot;</span><span class="p">)</span>
+            <span class="n">_camera_props</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;camera.</span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">k</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">camera</span><span class="o">.</span><span class="n">_controls</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">keys</span><span class="p">()]</span>
+            <span class="n">surface</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ui</span><span class="p">,</span> <span class="s2">&quot;surface&quot;</span><span class="p">)</span>
+            <span class="n">_subject</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">surface</span><span class="o">.</span><span class="n">_folders</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="mi">0</span><span class="p">]</span>
+            <span class="n">_surface</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">surface</span><span class="p">,</span> <span class="n">_subject</span><span class="p">)</span>
             <span class="n">_surface_props</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;surface.</span><span class="si">{subject}</span><span class="s1">.</span><span class="si">%s</span><span class="s1">&#39;</span><span class="o">%</span><span class="n">k</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">_surface</span><span class="o">.</span><span class="n">_controls</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">keys</span><span class="p">()]</span>
             <span class="n">_curvature_props</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;surface.</span><span class="si">{subject}</span><span class="s1">.curvature.brightness&#39;</span><span class="p">,</span>
                                 <span class="s1">&#39;surface.</span><span class="si">{subject}</span><span class="s1">.curvature.contrast&#39;</span><span class="p">,</span>
@@ -515,14 +535,15 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
             <span class="k">return</span> <span class="n">_camera_props</span> <span class="o">+</span> <span class="n">_surface_props</span> <span class="o">+</span> <span class="n">_curvature_props</span>
 
         <span class="k">def</span> <span class="nf">_set_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;Low-level command: sets view parameters in the current viewer</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Low-level command: sets view parameters in the current viewer</span>
 
 <span class="sd">            Sets each the state of each keyword argument provided. View parameters</span>
 <span class="sd">            that can be set include all parameters in the data.gui in the html view.</span>
 
 <span class="sd">            &quot;&quot;&quot;</span>
             <span class="c1"># Set unfolding level first, as it interacts with other arguments</span>
-            <span class="n">subject_list</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">ui</span><span class="o">.</span><span class="n">surface</span><span class="o">.</span><span class="n">_folders</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span>
+            <span class="n">surface</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ui</span><span class="p">,</span> <span class="s2">&quot;surface&quot;</span><span class="p">)</span>
+            <span class="n">subject_list</span> <span class="o">=</span> <span class="n">surface</span><span class="o">.</span><span class="n">_folders</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span>
             <span class="c1"># Better to only self.view_props once; it interacts with javascript, </span>
             <span class="c1"># don&#39;t want to do that too often, it leads to glitches.</span>
             <span class="n">vw_props</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">view_props</span><span class="p">)</span>
@@ -540,7 +561,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
                         <span class="n">time</span><span class="o">.</span><span class="n">sleep</span><span class="p">(</span><span class="mf">0.03</span><span class="p">)</span>
 
         <span class="k">def</span> <span class="nf">_capture_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">frame_time</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;Low-level command: returns a dict of current view parameters</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Low-level command: returns a dict of current view parameters</span>
 
 <span class="sd">            Retrieves the following view parameters from current viewer:</span>
 
@@ -573,7 +594,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
             <span class="k">return</span> <span class="n">view</span>
 
         <span class="k">def</span> <span class="nf">save_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">is_overwrite</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;Saves current view parameters to pycortex database</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Saves current view parameters to pycortex database</span>
 
 <span class="sd">            Parameters</span>
 <span class="sd">            ----------</span>
@@ -592,7 +613,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
             <span class="n">db</span><span class="o">.</span><span class="n">save_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">is_overwrite</span><span class="p">)</span>
 
         <span class="k">def</span> <span class="nf">get_view</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">name</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;Get saved view from pycortex database.</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Get saved view from pycortex database.</span>
 
 <span class="sd">            Retrieves named view from pycortex database and sets current</span>
 <span class="sd">            viewer parameters to retrieved values.</span>
@@ -619,7 +640,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
             <span class="k">return</span> <span class="n">Proxy</span><span class="p">(</span><span class="n">metadata</span><span class="p">)</span>
 
         <span class="k">def</span> <span class="nf">getImage</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="p">(</span><span class="mi">1920</span><span class="p">,</span> <span class="mi">1080</span><span class="p">)):</span>
-            <span class="sd">&quot;&quot;&quot;Saves currently displayed view to a .png image file</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Saves currently displayed view to a .png image file</span>
 
 <span class="sd">            Parameters</span>
 <span class="sd">            ----------</span>
@@ -634,7 +655,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
 
         <span class="k">def</span> <span class="nf">makeMovie</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">animation</span><span class="p">,</span> <span class="n">filename</span><span class="o">=</span><span class="s2">&quot;brainmovie</span><span class="si">%07d</span><span class="s2">.png&quot;</span><span class="p">,</span> <span class="n">offset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span>
                       <span class="n">fps</span><span class="o">=</span><span class="mi">30</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="p">(</span><span class="mi">1920</span><span class="p">,</span> <span class="mi">1080</span><span class="p">),</span> <span class="n">interpolation</span><span class="o">=</span><span class="s2">&quot;linear&quot;</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;Renders movie frames for animation of mesh movement</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Renders movie frames for animation of mesh movement</span>
 
 <span class="sd">            Makes an animation (for example, a transition between inflated and</span>
 <span class="sd">            flattened brain or a rotating brain) of a cortical surface. Takes a</span>
@@ -717,7 +738,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
                 <span class="bp">self</span><span class="o">.</span><span class="n">getImage</span><span class="p">(</span><span class="n">filename</span><span class="o">%</span><span class="p">(</span><span class="n">i</span><span class="o">+</span><span class="n">offset</span><span class="p">),</span> <span class="n">size</span><span class="o">=</span><span class="n">size</span><span class="p">)</span>
 
         <span class="k">def</span> <span class="nf">_get_anim_seq</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">keyframes</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="mi">30</span><span class="p">,</span> <span class="n">interpolation</span><span class="o">=</span><span class="s1">&#39;linear&#39;</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;Convert a list of keyframes to a list of EVERY frame in an animation.</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Convert a list of keyframes to a list of EVERY frame in an animation.</span>
 
 <span class="sd">            Utility function called by make_movie; separated out so that individual</span>
 <span class="sd">            frames of an animation can be re-rendered, or for more control over the</span>
@@ -744,7 +765,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
                 <span class="n">tdif</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">t1</span><span class="o">-</span><span class="n">t0</span><span class="p">)</span>
                 <span class="c1"># Check whether to continue frame sequence to endpoint</span>
                 <span class="n">use_endpoint</span> <span class="o">=</span> <span class="n">keyframes</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">==</span><span class="n">end</span>
-                <span class="n">nvalues</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="n">tdif</span><span class="o">/</span><span class="n">fs</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">int</span><span class="p">)</span>
+                <span class="n">nvalues</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">round</span><span class="p">(</span><span class="n">tdif</span><span class="o">/</span><span class="n">fs</span><span class="p">)</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">int</span><span class="p">)</span>
                 <span class="k">if</span> <span class="n">use_endpoint</span><span class="p">:</span>
                     <span class="n">nvalues</span> <span class="o">+=</span> <span class="mi">1</span>
                 <span class="n">fr_time</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">nvalues</span><span class="p">,</span> <span class="n">endpoint</span><span class="o">=</span><span class="n">use_endpoint</span><span class="p">)</span>
@@ -754,7 +775,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
                     <span class="k">for</span> <span class="n">prop</span> <span class="ow">in</span> <span class="n">start</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
                         <span class="k">if</span> <span class="n">prop</span><span class="o">==</span><span class="s1">&#39;time&#39;</span><span class="p">:</span>
                             <span class="k">continue</span>
-                        <span class="k">if</span> <span class="p">(</span><span class="n">start</span><span class="p">[</span><span class="n">prop</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">start</span><span class="p">[</span><span class="n">prop</span><span class="p">]</span> <span class="o">==</span> <span class="n">end</span><span class="p">[</span><span class="n">prop</span><span class="p">])</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">start</span><span class="p">[</span><span class="n">prop</span><span class="p">],</span> <span class="p">(</span><span class="nb">bool</span><span class="p">,)</span> <span class="o">+</span> <span class="n">six</span><span class="o">.</span><span class="n">string_types</span><span class="p">):</span>
+                        <span class="k">if</span> <span class="p">(</span><span class="n">start</span><span class="p">[</span><span class="n">prop</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">start</span><span class="p">[</span><span class="n">prop</span><span class="p">]</span> <span class="o">==</span> <span class="n">end</span><span class="p">[</span><span class="n">prop</span><span class="p">])</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">start</span><span class="p">[</span><span class="n">prop</span><span class="p">],</span> <span class="p">(</span><span class="nb">bool</span><span class="p">,</span> <span class="nb">str</span><span class="p">)):</span>
                             <span class="n">frame</span><span class="p">[</span><span class="n">prop</span><span class="p">]</span> <span class="o">=</span> <span class="n">start</span><span class="p">[</span><span class="n">prop</span><span class="p">]</span>
                             <span class="k">continue</span>
                         <span class="n">val</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">a</span><span class="p">(</span><span class="n">start</span><span class="p">[</span><span class="n">prop</span><span class="p">]),</span> <span class="n">a</span><span class="p">(</span><span class="n">end</span><span class="p">[</span><span class="n">prop</span><span class="p">]),</span> <span class="n">t</span><span class="p">)</span>
@@ -768,7 +789,7 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
         <span class="k">def</span> <span class="nf">make_movie_views</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">animation</span><span class="p">,</span> <span class="n">filename</span><span class="o">=</span><span class="s2">&quot;brainmovie</span><span class="si">%07d</span><span class="s2">.png&quot;</span><span class="p">,</span> 
             <span class="n">offset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="mi">30</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="p">(</span><span class="mi">1920</span><span class="p">,</span> <span class="mi">1080</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">frame_sleep</span><span class="o">=</span><span class="mf">0.05</span><span class="p">,</span>
             <span class="n">frame_start</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">interpolation</span><span class="o">=</span><span class="s2">&quot;linear&quot;</span><span class="p">):</span>
-            <span class="sd">&quot;&quot;&quot;Renders movie frames for animation of mesh movement</span>
+<span class="w">            </span><span class="sd">&quot;&quot;&quot;Renders movie frames for animation of mesh movement</span>
 
 <span class="sd">            Makes an animation (for example, a transition between inflated and</span>
 <span class="sd">            flattened brain or a rotating brain) of a cortical surface. Takes a</span>
@@ -863,11 +884,12 @@ <h1>Source code for cortex.webgl.view</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">client</span>
     <span class="k">else</span><span class="p">:</span>
         <span class="k">try</span><span class="p">:</span>
-            <span class="kn">from</span> <span class="nn">IPython.display</span> <span class="kn">import</span> <span class="n">display</span><span class="p">,</span> <span class="n">HTML</span>
+            <span class="kn">from</span> <span class="nn">IPython.display</span> <span class="kn">import</span> <span class="n">HTML</span><span class="p">,</span> <span class="n">display</span>
             <span class="n">display</span><span class="p">(</span><span class="n">HTML</span><span class="p">(</span><span class="s1">&#39;Open viewer: &lt;a href=&quot;</span><span class="si">{0}</span><span class="s1">&quot; target=&quot;_blank&quot;&gt;</span><span class="si">{0}</span><span class="s1">&lt;/a&gt;&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">url</span><span class="p">)))</span>
         <span class="k">except</span><span class="p">:</span>
             <span class="k">pass</span>
     <span class="k">return</span> <span class="n">server</span></div>
+
 </pre></div>
 
           </div>
@@ -918,7 +940,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../../search.html" method="get">
@@ -926,8 +948,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -941,11 +963,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/cortex/xfm.html b/_modules/cortex/xfm.html
index be20e0f6a..5a7aa3e63 100644
--- a/_modules/cortex/xfm.html
+++ b/_modules/cortex/xfm.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cortex.xfm &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <title>cortex.xfm &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,14 +38,18 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
 <span class="sd">&quot;&quot;&quot;</span>
 <span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">six</span> <span class="kn">import</span> <span class="n">string_types</span>
+<span class="kn">import</span> <span class="nn">subprocess</span>
 
-<div class="viewcode-block" id="Transform"><a class="viewcode-back" href="../../generated/cortex.xfm.Transform.html#cortex.xfm.Transform">[docs]</a><span class="k">class</span> <span class="nc">Transform</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
-    <span class="sd">&#39;&#39;&#39;</span>
+<div class="viewcode-block" id="Transform">
+<a class="viewcode-back" href="../../generated/cortex.xfm.Transform.html#cortex.xfm.Transform">[docs]</a>
+<span class="k">class</span> <span class="nc">Transform</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&#39;&#39;&#39;</span>
 <span class="sd">    A standard affine transform. Typically holds a transform from anatomical</span>
 <span class="sd">    magnet space to epi file space.</span>
 <span class="sd">    &#39;&#39;&#39;</span>
-<div class="viewcode-block" id="Transform.__init__"><a class="viewcode-back" href="../../generated/cortex.xfm.Transform.html#cortex.xfm.Transform.__init__">[docs]</a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">reference</span><span class="p">):</span>
+<div class="viewcode-block" id="Transform.__init__">
+<a class="viewcode-back" href="../../generated/cortex.xfm.Transform.html#cortex.xfm.Transform.__init__">[docs]</a>
+    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">reference</span><span class="p">):</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">xfm</span> <span class="o">=</span> <span class="n">xfm</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">reference</span> <span class="o">=</span> <span class="kc">None</span>
 
@@ -63,6 +66,7 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
             <span class="bp">self</span><span class="o">.</span><span class="n">reference</span> <span class="o">=</span> <span class="n">reference</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="mi">3</span><span class="p">][::</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span></div>
 
+
     <span class="k">def</span> <span class="fm">__call__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">pts</span><span class="p">):</span>
         <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">xfm</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">hstack</span><span class="p">([</span><span class="n">pts</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">pts</span><span class="p">),</span><span class="mi">1</span><span class="p">))])</span><span class="o">.</span><span class="n">T</span><span class="p">)[:</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">T</span>
 
@@ -104,7 +108,7 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
 
     <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_fsl</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">func_nii</span><span class="p">,</span> <span class="n">anat_nii</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Converts an fsl transform to a pycortex transform.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Converts an fsl transform to a pycortex transform.</span>
 
 <span class="sd">        Converts a transform computed using FSL&#39;s FLIRT to a transform (&quot;xfm&quot;) object in pycortex.</span>
 <span class="sd">        The transform must have been computed FROM the nifti volume specified in `func_nii` TO the</span>
@@ -141,10 +145,10 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
         <span class="n">inv</span> <span class="o">=</span> <span class="n">npl</span><span class="o">.</span><span class="n">inv</span>
 
         <span class="c1"># Load transform from text file, if string is provided</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">xfm</span><span class="p">,</span> <span class="n">string_types</span><span class="p">):</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">xfm</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
             <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">xfm</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fid</span><span class="p">:</span>
                 <span class="n">L</span> <span class="o">=</span> <span class="n">fid</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-            <span class="n">xfm</span>  <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
+            <span class="n">xfm</span>  <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float_</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
 
         <span class="c1"># Internally, pycortex computes the OPPOSITE transform: from anatomical volume to functional volume.</span>
         <span class="c1"># Thus, assign anat to &quot;infile&quot; (starting point for transform)</span>
@@ -160,8 +164,8 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
             <span class="n">inIm</span> <span class="o">=</span> <span class="n">infile</span>
 
         <span class="n">refIm</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">reffile</span><span class="p">)</span>
-        <span class="n">in_hdr</span> <span class="o">=</span> <span class="n">inIm</span><span class="o">.</span><span class="n">get_header</span><span class="p">()</span>
-        <span class="n">ref_hdr</span> <span class="o">=</span> <span class="n">refIm</span><span class="o">.</span><span class="n">get_header</span><span class="p">()</span>
+        <span class="n">in_hdr</span> <span class="o">=</span> <span class="n">inIm</span><span class="o">.</span><span class="n">header</span>
+        <span class="n">ref_hdr</span> <span class="o">=</span> <span class="n">refIm</span><span class="o">.</span><span class="n">header</span>
         <span class="c1"># get_zooms gets the positive voxel sizes as returned in the header</span>
         <span class="n">inspace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">in_hdr</span><span class="o">.</span><span class="n">get_zooms</span><span class="p">()[:</span><span class="mi">3</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="mi">1</span><span class="p">,))</span>
         <span class="n">refspace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">ref_hdr</span><span class="o">.</span><span class="n">get_zooms</span><span class="p">()[:</span><span class="mi">3</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="mi">1</span><span class="p">,))</span>
@@ -173,17 +177,17 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
         <span class="k">if</span> <span class="n">npl</span><span class="o">.</span><span class="n">det</span><span class="p">(</span><span class="n">ref_hdr</span><span class="o">.</span><span class="n">get_best_affine</span><span class="p">())</span><span class="o">&gt;=</span><span class="mi">0</span><span class="p">:</span>
             <span class="n">refspace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">refspace</span><span class="p">,</span> <span class="n">_x_flipper</span><span class="p">(</span><span class="n">ref_hdr</span><span class="o">.</span><span class="n">get_data_shape</span><span class="p">()[</span><span class="mi">0</span><span class="p">]))</span>
 
-        <span class="n">inAffine</span> <span class="o">=</span> <span class="n">inIm</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()</span>
+        <span class="n">inAffine</span> <span class="o">=</span> <span class="n">inIm</span><span class="o">.</span><span class="n">affine</span>
 
         <span class="n">coord</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">inv</span><span class="p">(</span><span class="n">refspace</span><span class="p">),</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">xfm</span><span class="p">,</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">inspace</span><span class="p">,</span><span class="n">inv</span><span class="p">(</span><span class="n">inAffine</span><span class="p">))))</span>
         <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">coord</span><span class="p">,</span> <span class="n">refIm</span><span class="p">)</span>
 
     <span class="k">def</span> <span class="nf">to_fsl</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">anat_nii</span><span class="p">,</span> <span class="n">direction</span><span class="o">=</span><span class="s1">&#39;func&gt;anat&#39;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Converts a pycortex transform to an FSL transform.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Converts a pycortex transform to an FSL transform.</span>
 
 <span class="sd">        Uses the stored &quot;reference&quot; file provided when the transform was created (usually</span>
 <span class="sd">        a functional data or statistical volume) and the supplied anatomical file to</span>
-<span class="sd">        create an FSL transform. By default, returns the transform FROM the refernce volume</span>
+<span class="sd">        create an FSL transform. By default, returns the transform FROM the reference volume</span>
 <span class="sd">        (usually the functional data volume) to the anatomical volume (`anat_nii` input).</span>
 
 <span class="sd">        Parameters</span>
@@ -213,8 +217,8 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
             <span class="n">inIm</span> <span class="o">=</span> <span class="n">nibabel</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">infile</span><span class="p">)</span>
         <span class="k">except</span> <span class="ne">AttributeError</span><span class="p">:</span>
             <span class="n">inIm</span> <span class="o">=</span> <span class="n">infile</span>
-        <span class="n">in_hdr</span> <span class="o">=</span> <span class="n">inIm</span><span class="o">.</span><span class="n">get_header</span><span class="p">()</span>
-        <span class="n">ref_hdr</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_header</span><span class="p">()</span>
+        <span class="n">in_hdr</span> <span class="o">=</span> <span class="n">inIm</span><span class="o">.</span><span class="n">header</span>
+        <span class="n">ref_hdr</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">header</span>
         <span class="c1"># get_zooms gets the positive voxel sizes as returned in the header</span>
         <span class="n">inspace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">in_hdr</span><span class="o">.</span><span class="n">get_zooms</span><span class="p">()[:</span><span class="mi">3</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="mi">1</span><span class="p">,))</span>
         <span class="n">refspace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">ref_hdr</span><span class="o">.</span><span class="n">get_zooms</span><span class="p">()[:</span><span class="mi">3</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="mi">1</span><span class="p">,))</span>
@@ -228,7 +232,7 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
             <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Determinant is &gt; 0: FLIPPING!&quot;</span><span class="p">)</span>
             <span class="n">refspace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">refspace</span><span class="p">,</span> <span class="n">_x_flipper</span><span class="p">(</span><span class="n">ref_hdr</span><span class="o">.</span><span class="n">get_data_shape</span><span class="p">()[</span><span class="mi">0</span><span class="p">]))</span>
 
-        <span class="n">inAffine</span> <span class="o">=</span> <span class="n">inIm</span><span class="o">.</span><span class="n">get_affine</span><span class="p">()</span>
+        <span class="n">inAffine</span> <span class="o">=</span> <span class="n">inIm</span><span class="o">.</span><span class="n">affine</span>
 
         <span class="n">fslx</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">refspace</span><span class="p">,</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">xfm</span><span class="p">,</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">inAffine</span><span class="p">,</span><span class="n">inv</span><span class="p">(</span><span class="n">inspace</span><span class="p">))))</span>
         <span class="k">if</span> <span class="n">direction</span><span class="o">==</span><span class="s1">&#39;func&gt;anat&#39;</span><span class="p">:</span>
@@ -238,7 +242,7 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
 
     <span class="nd">@classmethod</span>
     <span class="k">def</span> <span class="nf">from_freesurfer</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">fs_register</span><span class="p">,</span> <span class="n">func_nii</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Converts a FreeSurfer transform to a pycortex transform.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Converts a FreeSurfer transform to a pycortex transform.</span>
 
 <span class="sd">        Converts a transform computed using FreeSurfer alignment tools (e.g., bbregister) to</span>
 <span class="sd">        a transform (&quot;xfm&quot;) object in pycortex. The transform must have been computed</span>
@@ -280,11 +284,10 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
         <span class="n">inv</span> <span class="o">=</span> <span class="n">npl</span><span class="o">.</span><span class="n">inv</span>
 
         <span class="c1"># Load anatomical to functional transform from register.dat file, if string is provided</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fs_register</span><span class="p">,</span> <span class="n">string_types</span><span class="p">):</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fs_register</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
             <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fs_register</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fid</span><span class="p">:</span>
                 <span class="n">L</span> <span class="o">=</span> <span class="n">fid</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-
-            <span class="n">anat2func</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">[</span><span class="mi">4</span><span class="p">:</span><span class="mi">8</span><span class="p">]])</span>
+            <span class="n">anat2func</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float_</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">[</span><span class="mi">4</span><span class="p">:</span><span class="mi">8</span><span class="p">]])</span>
         <span class="k">else</span><span class="p">:</span>
             <span class="n">anat2func</span> <span class="o">=</span> <span class="n">fs_register</span>
 
@@ -299,34 +302,16 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
         <span class="k">try</span><span class="p">:</span>
             <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;mri_info&#39;</span><span class="p">,</span> <span class="s1">&#39;--vox2ras&#39;</span><span class="p">,</span> <span class="n">anat_mgz</span><span class="p">)</span>
             <span class="n">L</span> <span class="o">=</span> <span class="n">decode</span><span class="p">(</span><span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span>
-            <span class="n">anat_vox2ras</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
+            <span class="n">anat_vox2ras</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float_</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
         <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
-            <span class="nb">print</span> <span class="p">(</span><span class="s2">&quot;Error occured while executing:</span><span class="se">\n</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">)))</span>
+            <span class="nb">print</span> <span class="p">(</span><span class="s2">&quot;Error occurred while executing:</span><span class="se">\n</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">)))</span>
             <span class="k">raise</span>
 
-        <span class="c1"># Read tkrvox2ras transform for the  anatomical volume</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;mri_info&#39;</span><span class="p">,</span> <span class="s1">&#39;--vox2ras-tkr&#39;</span><span class="p">,</span> <span class="n">anat_mgz</span><span class="p">)</span>
-            <span class="n">L</span> <span class="o">=</span> <span class="n">decode</span><span class="p">(</span><span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span>
-            <span class="n">anat_tkrvox2ras</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
-        <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
-            <span class="nb">print</span> <span class="p">(</span><span class="s2">&quot;Error occured while executing:</span><span class="se">\n</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">)))</span>
-            <span class="k">raise</span>
+        <span class="c1"># Read tkrvox2ras transform for the anatomical volume</span>
+        <span class="n">anat_tkrvox2ras</span> <span class="o">=</span> <span class="n">_vox2ras_tkr</span><span class="p">(</span><span class="n">anat_mgz</span><span class="p">)</span>
 
         <span class="c1"># Read tkvox2ras transform for the functional volume</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;mri_info&#39;</span><span class="p">,</span> <span class="s1">&#39;--vox2ras-tkr&#39;</span><span class="p">,</span> <span class="n">func_nii</span><span class="p">)</span>
-            <span class="n">L</span> <span class="o">=</span> <span class="n">decode</span><span class="p">(</span><span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span>
-            <span class="c1"># The [1:] index skips a first line that is present only if an error occurs</span>
-            <span class="c1"># or some info is missing when the transform is created - i.e.</span>
-            <span class="c1"># not in all cases, just in the case that the transform is </span>
-            <span class="c1"># created exactly as it is now. </span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">L</span><span class="p">)</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
-                <span class="n">L</span> <span class="o">=</span> <span class="n">L</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
-            <span class="n">func_tkrvox2ras</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
-        <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
-            <span class="nb">print</span> <span class="p">(</span><span class="s2">&quot;Error occured while executing:</span><span class="se">\n</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">)))</span>
-            <span class="k">raise</span>
+        <span class="n">func_tkrvox2ras</span> <span class="o">=</span> <span class="n">_vox2ras_tkr</span><span class="p">(</span><span class="n">func_nii</span><span class="p">)</span>
 
         <span class="c1"># Calculate pycorex transform (i.e. scanner to functional transform)</span>
         <span class="n">coord</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">inv</span><span class="p">(</span><span class="n">func_tkrvox2ras</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">anat2func</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">anat_tkrvox2ras</span><span class="p">,</span> <span class="n">inv</span><span class="p">(</span><span class="n">anat_vox2ras</span><span class="p">))))</span>
@@ -338,8 +323,9 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">coord</span><span class="p">,</span> <span class="n">refIm</span><span class="p">)</span>
 
+
     <span class="k">def</span> <span class="nf">to_freesurfer</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fs_register</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">freesurfer_subject_dir</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Converts a pycortex transform to a FreeSurfer transform.</span>
+<span class="w">        </span><span class="sd">&quot;&quot;&quot;Converts a pycortex transform to a FreeSurfer transform.</span>
 
 <span class="sd">        Converts a transform stored in pycortex xfm object to the FreeSurfer format</span>
 <span class="sd">        (i.e., register.dat format: https://surfer.nmr.mgh.harvard.edu/fswiki/RegisterDat)</span>
@@ -371,31 +357,10 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
         <span class="n">anat_vox2ras</span> <span class="o">=</span> <span class="n">anat</span><span class="o">.</span><span class="n">affine</span>
 
         <span class="c1"># Read tkrvox2ras transform for the  anatomical volume</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;mri_info&#39;</span><span class="p">,</span> <span class="s1">&#39;--vox2ras-tkr&#39;</span><span class="p">,</span> <span class="n">anat</span><span class="o">.</span><span class="n">get_filename</span><span class="p">())</span>
-            <span class="n">L</span> <span class="o">=</span> <span class="n">decode</span><span class="p">(</span><span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span>
-            <span class="n">anat_tkrvox2ras</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
-        <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
-            <span class="nb">print</span> <span class="p">(</span><span class="s2">&quot;Error occured while executing:</span><span class="se">\n</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">)))</span>
-            <span class="k">raise</span>
+        <span class="n">anat_tkrvox2ras</span> <span class="o">=</span> <span class="n">_vox2ras_tkr</span><span class="p">(</span><span class="n">anat</span><span class="o">.</span><span class="n">get_filename</span><span class="p">())</span>
 
         <span class="c1"># Read tkvox2ras transform for the functional volume</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;mri_info&#39;</span><span class="p">,</span> <span class="s1">&#39;--vox2ras-tkr&#39;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_filename</span><span class="p">())</span>
-            <span class="n">L</span> <span class="o">=</span> <span class="n">decode</span><span class="p">(</span><span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span>
-            <span class="c1"># The [1:] index skips a first line that is present only if an error occurs</span>
-            <span class="c1"># or some info is missing when the transform is created - i.e.</span>
-            <span class="c1"># not in all cases, just in the case that the transform is </span>
-            <span class="c1"># created exactly as it is now. </span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">L</span><span class="p">)</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
-            	<span class="n">L</span> <span class="o">=</span> <span class="n">L</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
-            <span class="n">func_tkrvox2ras</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="n">np</span><span class="o">.</span><span class="n">float</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
-        <span class="k">except</span> <span class="ne">OSError</span><span class="p">:</span>
-            <span class="nb">print</span> <span class="p">(</span><span class="s2">&quot;Error occured while executing:</span><span class="se">\n</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">)))</span>
-            <span class="k">raise</span>
-        <span class="c1"># Debugging code</span>
-        <span class="c1">#print(&#39;Shape of func_tkrvox2ras is: [SHOULD BE (4,4) !!]&#39;)</span>
-        <span class="c1">#print(func_tkrvox2ras.shape)</span>
+        <span class="n">func_tkrvox2ras</span> <span class="o">=</span> <span class="n">_vox2ras_tkr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_filename</span><span class="p">())</span>
 
         <span class="c1"># Read voxel resolution of the functional volume</span>
         <span class="n">func_voxres</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">header</span><span class="o">.</span><span class="n">get_zooms</span><span class="p">()</span>
@@ -403,9 +368,6 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
         <span class="c1"># Calculate FreeSurfer transform</span>
         <span class="n">fs_anat2func</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">func_tkrvox2ras</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">xfm</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">anat_vox2ras</span><span class="p">,</span> <span class="n">inv</span><span class="p">(</span><span class="n">anat_tkrvox2ras</span><span class="p">))))</span>
 
-        <span class="c1"># Debugging code</span>
-        <span class="c1">#if not fs_anat2func.shape == (4, 4):</span>
-        <span class="c1">#    raise Exception(&quot;bad assumptions led to bad transformation matrix.&quot;)</span>
         <span class="c1"># Write out to `fs_register` in register.dat format</span>
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fs_register</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fid</span><span class="p">:</span>
             <span class="n">fid</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">{}</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">subject</span><span class="p">))</span>
@@ -419,8 +381,9 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
 
         <span class="k">return</span> <span class="n">fs_anat2func</span></div>
 
+
 <span class="k">def</span> <span class="nf">isstr</span><span class="p">(</span><span class="n">obj</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Check for stringy-ness in python 2.7 or 3&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Check for stringy-ness in python 2.7 or 3&quot;&quot;&quot;</span>
     <span class="k">try</span><span class="p">:</span>
         <span class="k">return</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">basestring</span><span class="p">)</span>
     <span class="k">except</span> <span class="ne">NameError</span><span class="p">:</span>
@@ -437,6 +400,32 @@ <h1>Source code for cortex.xfm</h1><div class="highlight"><pre>
     <span class="n">flipr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">([</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
     <span class="n">flipr</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span><span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="n">N_i</span> <span class="o">-</span> <span class="mi">1</span>
     <span class="k">return</span> <span class="n">flipr</span>
+
+
+<span class="k">def</span> <span class="nf">_vox2ras_tkr</span><span class="p">(</span><span class="n">image</span><span class="p">):</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Run `mri_info --vox2ras-tkr` on `image` and return a numpy array with the</span>
+<span class="sd">    output affine&quot;&quot;&quot;</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;mri_info&#39;</span><span class="p">,</span> <span class="s1">&#39;--vox2ras-tkr&#39;</span><span class="p">,</span> <span class="n">image</span><span class="p">)</span>
+        <span class="n">L</span> <span class="o">=</span> <span class="n">decode</span><span class="p">(</span><span class="n">subprocess</span><span class="o">.</span><span class="n">check_output</span><span class="p">(</span><span class="n">cmd</span><span class="p">))</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()</span>
+        <span class="c1"># Skip headers/additional information. Example output of</span>
+        <span class="c1"># mri_info --vox2ras-tkr</span>
+        <span class="c1">#</span>
+        <span class="c1"># niiRead(): NIFTI_UNITS_UNKNOWN, assuming mm</span>
+        <span class="c1">#   -2.61900    0.00000    0.00000   81.18900</span>
+        <span class="c1">#    0.00000    0.00000    2.60000  -63.70000</span>
+        <span class="c1">#    0.00000   -2.61900    0.00000   87.73650</span>
+        <span class="c1">#    0.00000    0.00000    0.00000    1.00000</span>
+        <span class="c1">#</span>
+        <span class="c1"># Just take the last 4 lines because the length of the extra info is</span>
+        <span class="c1"># unpredictable.</span>
+        <span class="n">L</span> <span class="o">=</span> <span class="n">L</span><span class="p">[</span><span class="o">-</span><span class="mi">4</span><span class="p">:]</span>
+        <span class="n">tkrvox2ras</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+            <span class="p">[[</span><span class="n">np</span><span class="o">.</span><span class="n">float_</span><span class="p">(</span><span class="n">s</span><span class="p">)</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">ll</span><span class="o">.</span><span class="n">split</span><span class="p">()</span> <span class="k">if</span> <span class="n">s</span><span class="p">]</span> <span class="k">for</span> <span class="n">ll</span> <span class="ow">in</span> <span class="n">L</span><span class="p">])</span>
+    <span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Error occurred while executing:</span><span class="se">\n</span><span class="si">{}</span><span class="s2">&quot;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">cmd</span><span class="p">)))</span>
+        <span class="k">raise</span> <span class="n">e</span>
+    <span class="k">return</span> <span class="n">tkrvox2ras</span>
 </pre></div>
 
           </div>
@@ -487,7 +476,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -495,8 +484,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -510,11 +499,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_modules/index.html b/_modules/index.html
index bb49115a7..54e10011b 100644
--- a/_modules/index.html
+++ b/_modules/index.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Overview: module code &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <title>Overview: module code &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -103,7 +102,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -111,8 +110,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -126,11 +125,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/_sources/align.rst.txt b/_sources/align.rst.txt
index c2e42d948..06b4ad9bb 100644
--- a/_sources/align.rst.txt
+++ b/_sources/align.rst.txt
@@ -75,7 +75,7 @@ There's weird gray blobs - click anywhere to get rid of them.
 .. image:: ./aligner/snapshot2.png
 	:width: 600 px
 
-Here you see 4 different views, showing the saggital, coronal, and transverse slices, and also the three slices in 3D.
+Here you see 4 different views, showing the sagittal, coronal, and transverse slices, and also the three slices in 3D.
 The background image is the reference image, and the mesh that you see is the surface that you will be aligning.
 You'll be moving the mesh until it's aligned as much as possible with the reference.
 
@@ -105,7 +105,7 @@ You can also use the ``contrast`` and ``brightness`` sliders to adjust the color
 	:width: 600 px
 
 The ``Outline color`` and ``Outline rep`` can be used to change the surface color, and the surface from a mesh (the default), to points only, to a solid surface.
-Also, the sliders can be used to chane line and point weights.
+Also, the sliders can be used to change line and point weights.
 Here, we changed it to a green points only representation, with smaller points.
 
 .. image:: ./aligner/surface.png
diff --git a/_sources/auto_examples/datasets/index.rst.txt b/_sources/auto_examples/datasets/index.rst.txt
new file mode 100644
index 000000000..ac0f7d189
--- /dev/null
+++ b/_sources/auto_examples/datasets/index.rst.txt
@@ -0,0 +1,170 @@
+
+
+.. _sphx_glr_auto_examples_datasets:
+
+Datasets Examples
+------------------------------
+
+Examples demonstrating how to create, manipulate, plot datasets.
+
+
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_dataset_arithmetic_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_datasets_plot_dataset_arithmetic.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Dataset Arithmetic</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="In order to move from Volume data to Vertex data, you start with data from voxels and then crea...">
+
+.. only:: html
+
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume_to_vertex_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_datasets_plot_volume_to_vertex.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Map from Volume to Vertex Data</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_datasets_plot_volume.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot Volume Data</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This plots example vertex data onto an example subject, S1, onto a flatmap using quickflat. In ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertex_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_datasets_plot_vertex.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot Vertex Data</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This plots example 2D vertex data onto an example subject, S1, onto a flatmap using quickflat. ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertex2D_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_datasets_plot_vertex2D.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot 2D Vertex Data</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume2D_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_datasets_plot_volume2D.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot 2D Volume Data</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This plots example RGB vertex data onto an example subject, S1, onto a flatmap using quickflat....">
+
+.. only:: html
+
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertexRGB_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_datasets_plot_vertexRGB.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot RGB Vertex Data</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This plots an example RGB dataset onto an example subject, S1, onto a flatmap using quickflat. ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volumeRGB_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_datasets_plot_volumeRGB.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot RGB Volume Data</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
+
+
+.. toctree::
+   :hidden:
+
+   /auto_examples/datasets/plot_dataset_arithmetic
+   /auto_examples/datasets/plot_volume_to_vertex
+   /auto_examples/datasets/plot_volume
+   /auto_examples/datasets/plot_vertex
+   /auto_examples/datasets/plot_vertex2D
+   /auto_examples/datasets/plot_volume2D
+   /auto_examples/datasets/plot_vertexRGB
+   /auto_examples/datasets/plot_volumeRGB
+
diff --git a/_sources/auto_examples/datasets/plot_dataset_arithmetic.rst.txt b/_sources/auto_examples/datasets/plot_dataset_arithmetic.rst.txt
index e0a541614..afa1ae329 100644
--- a/_sources/auto_examples/datasets/plot_dataset_arithmetic.rst.txt
+++ b/_sources/auto_examples/datasets/plot_dataset_arithmetic.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_datasets_plot_dataset_arithmetic.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_datasets_plot_dataset_arithmetic.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -60,23 +60,15 @@ normal arithmetic operators like +, -, *, /, and **
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
     Generating a flatmap cache
-    Failed to get connection
-    ** (inkscape:5116): CRITICAL **: 01:26:49.265: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5116): CRITICAL **: 01:26:49.265: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5116): CRITICAL **: 01:26:49.265: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5119): CRITICAL **: 01:26:50.304: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5119): CRITICAL **: 01:26:50.304: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5119): CRITICAL **: 01:26:50.304: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5122): CRITICAL **: 01:26:51.342: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5122): CRITICAL **: 01:26:51.342: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5122): CRITICAL **: 01:26:51.342: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -85,7 +77,7 @@ normal arithmetic operators like +, -, *, /, and **
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -119,28 +111,22 @@ normal arithmetic operators like +, -, *, /, and **
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  18.572 seconds)
+   **Total running time of the script:** (0 minutes 14.861 seconds)
 
 
 .. _sphx_glr_download_auto_examples_datasets_plot_dataset_arithmetic.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_dataset_arithmetic.py <plot_dataset_arithmetic.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_dataset_arithmetic.ipynb <plot_dataset_arithmetic.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_dataset_arithmetic.ipynb <plot_dataset_arithmetic.ipynb>`
+      :download:`Download Python source code: plot_dataset_arithmetic.py <plot_dataset_arithmetic.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/datasets/plot_vertex.rst.txt b/_sources/auto_examples/datasets/plot_vertex.rst.txt
index 18370e858..b9bc3697f 100644
--- a/_sources/auto_examples/datasets/plot_vertex.rst.txt
+++ b/_sources/auto_examples/datasets/plot_vertex.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_datasets_plot_vertex.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_datasets_plot_vertex.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -61,18 +61,12 @@ filled in with zeros.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5153): CRITICAL **: 01:27:09.888: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5153): CRITICAL **: 01:27:09.888: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5153): CRITICAL **: 01:27:09.888: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5156): CRITICAL **: 01:27:10.878: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5156): CRITICAL **: 01:27:10.878: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5156): CRITICAL **: 01:27:10.878: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -81,7 +75,7 @@ filled in with zeros.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -121,28 +115,22 @@ filled in with zeros.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  4.388 seconds)
+   **Total running time of the script:** (0 minutes 3.304 seconds)
 
 
 .. _sphx_glr_download_auto_examples_datasets_plot_vertex.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_vertex.py <plot_vertex.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_vertex.ipynb <plot_vertex.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_vertex.ipynb <plot_vertex.ipynb>`
+      :download:`Download Python source code: plot_vertex.py <plot_vertex.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/datasets/plot_vertex2D.rst.txt b/_sources/auto_examples/datasets/plot_vertex2D.rst.txt
index 2e77d0ebc..c95a57307 100644
--- a/_sources/auto_examples/datasets/plot_vertex2D.rst.txt
+++ b/_sources/auto_examples/datasets/plot_vertex2D.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_datasets_plot_vertex2D.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_datasets_plot_vertex2D.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -28,7 +28,7 @@ subject in the pycortex filestore.
 
 The cortex.Vertex2D object is instantiated with two numpy arrays of the same
 size as the total number of vertices in that subject's flatmap. Each pixel is
-colored according to both vlaues given for the nearest vertex in the flatmap.
+colored according to both values given for the nearest vertex in the flatmap.
 
 Instead of random test data, you can replace these with any arrays that are
 the length of the all the vertices in the subject.
@@ -45,14 +45,10 @@ the length of the all the vertices in the subject.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5161): CRITICAL **: 01:27:14.312: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5161): CRITICAL **: 01:27:14.312: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5161): CRITICAL **: 01:27:14.312: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -61,7 +57,7 @@ the length of the all the vertices in the subject.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -98,28 +94,22 @@ the length of the all the vertices in the subject.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  1.972 seconds)
+   **Total running time of the script:** (0 minutes 1.433 seconds)
 
 
 .. _sphx_glr_download_auto_examples_datasets_plot_vertex2D.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_vertex2D.py <plot_vertex2D.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_vertex2D.ipynb <plot_vertex2D.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_vertex2D.ipynb <plot_vertex2D.ipynb>`
+      :download:`Download Python source code: plot_vertex2D.py <plot_vertex2D.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/datasets/plot_vertexRGB.rst.txt b/_sources/auto_examples/datasets/plot_vertexRGB.rst.txt
index e8a98f9d1..7a8496c86 100644
--- a/_sources/auto_examples/datasets/plot_vertexRGB.rst.txt
+++ b/_sources/auto_examples/datasets/plot_vertexRGB.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_datasets_plot_vertexRGB.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_datasets_plot_vertexRGB.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -46,14 +46,10 @@ use any cortex.Vertex objects in their place though.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5177): CRITICAL **: 01:27:22.876: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5177): CRITICAL **: 01:27:22.876: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5177): CRITICAL **: 01:27:22.876: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -62,7 +58,7 @@ use any cortex.Vertex objects in their place though.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -116,28 +112,22 @@ use any cortex.Vertex objects in their place though.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  1.988 seconds)
+   **Total running time of the script:** (0 minutes 1.425 seconds)
 
 
 .. _sphx_glr_download_auto_examples_datasets_plot_vertexRGB.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_vertexRGB.py <plot_vertexRGB.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_vertexRGB.ipynb <plot_vertexRGB.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_vertexRGB.ipynb <plot_vertexRGB.ipynb>`
+      :download:`Download Python source code: plot_vertexRGB.py <plot_vertexRGB.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/datasets/plot_volume.rst.txt b/_sources/auto_examples/datasets/plot_volume.rst.txt
index 936b7cac7..c646a9fca 100644
--- a/_sources/auto_examples/datasets/plot_volume.rst.txt
+++ b/_sources/auto_examples/datasets/plot_volume.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_datasets_plot_volume.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_datasets_plot_volume.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -67,22 +67,14 @@ on the brain.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5140): CRITICAL **: 01:27:03.098: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5140): CRITICAL **: 01:27:03.098: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5140): CRITICAL **: 01:27:03.098: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5144): CRITICAL **: 01:27:04.129: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5144): CRITICAL **: 01:27:04.129: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5144): CRITICAL **: 01:27:04.129: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5147): CRITICAL **: 01:27:05.165: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5147): CRITICAL **: 01:27:05.165: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5147): CRITICAL **: 01:27:05.165: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -91,7 +83,7 @@ on the brain.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -126,28 +118,22 @@ on the brain.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  6.435 seconds)
+   **Total running time of the script:** (0 minutes 4.868 seconds)
 
 
 .. _sphx_glr_download_auto_examples_datasets_plot_volume.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_volume.py <plot_volume.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_volume.ipynb <plot_volume.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_volume.ipynb <plot_volume.ipynb>`
+      :download:`Download Python source code: plot_volume.py <plot_volume.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/datasets/plot_volume2D.rst.txt b/_sources/auto_examples/datasets/plot_volume2D.rst.txt
index 80579a828..131867439 100644
--- a/_sources/auto_examples/datasets/plot_volume2D.rst.txt
+++ b/_sources/auto_examples/datasets/plot_volume2D.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_datasets_plot_volume2D.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_datasets_plot_volume2D.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -74,26 +74,14 @@ used in the last flatmap is
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    /home/runner/work/pycortex/pycortex/cortex/quickflat/utils.py:497: UserWarning: Trying to register the cmap 'RdBu_covar' which already exists.
-      cm.register_cmap(dataview.cmap, cmap)
-    Failed to get connection
-    ** (inkscape:5164): CRITICAL **: 01:27:16.461: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5164): CRITICAL **: 01:27:16.461: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5164): CRITICAL **: 01:27:16.461: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    /home/runner/work/pycortex/pycortex/cortex/quickflat/utils.py:497: UserWarning: Trying to register the cmap 'RdBu_covar' which already exists.
-      cm.register_cmap(dataview.cmap, cmap)
-    Failed to get connection
-    ** (inkscape:5168): CRITICAL **: 01:27:17.574: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5168): CRITICAL **: 01:27:17.574: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5168): CRITICAL **: 01:27:17.574: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5171): CRITICAL **: 01:27:18.683: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5171): CRITICAL **: 01:27:18.683: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5171): CRITICAL **: 01:27:18.683: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -102,7 +90,7 @@ used in the last flatmap is
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -142,28 +130,22 @@ used in the last flatmap is
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  6.264 seconds)
+   **Total running time of the script:** (0 minutes 4.602 seconds)
 
 
 .. _sphx_glr_download_auto_examples_datasets_plot_volume2D.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_volume2D.py <plot_volume2D.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_volume2D.ipynb <plot_volume2D.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_volume2D.ipynb <plot_volume2D.ipynb>`
+      :download:`Download Python source code: plot_volume2D.py <plot_volume2D.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/datasets/plot_volumeRGB.rst.txt b/_sources/auto_examples/datasets/plot_volumeRGB.rst.txt
index 930a153e0..155a8b836 100644
--- a/_sources/auto_examples/datasets/plot_volumeRGB.rst.txt
+++ b/_sources/auto_examples/datasets/plot_volumeRGB.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_datasets_plot_volumeRGB.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_datasets_plot_volumeRGB.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -80,22 +80,14 @@ shared_vmax` will allow you to specify minimum and maximum values manually.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5180): CRITICAL **: 01:27:25.026: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5180): CRITICAL **: 01:27:25.026: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5180): CRITICAL **: 01:27:25.026: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5192): CRITICAL **: 01:27:31.612: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5192): CRITICAL **: 01:27:31.612: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5192): CRITICAL **: 01:27:31.612: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5202): CRITICAL **: 01:27:38.226: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5202): CRITICAL **: 01:27:38.227: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5202): CRITICAL **: 01:27:38.227: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -104,7 +96,7 @@ shared_vmax` will allow you to specify minimum and maximum values manually.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -167,28 +159,22 @@ shared_vmax` will allow you to specify minimum and maximum values manually.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  17.227 seconds)
+   **Total running time of the script:** (0 minutes 11.075 seconds)
 
 
 .. _sphx_glr_download_auto_examples_datasets_plot_volumeRGB.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_volumeRGB.py <plot_volumeRGB.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_volumeRGB.ipynb <plot_volumeRGB.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_volumeRGB.ipynb <plot_volumeRGB.ipynb>`
+      :download:`Download Python source code: plot_volumeRGB.py <plot_volumeRGB.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/datasets/plot_volume_to_vertex.rst.txt b/_sources/auto_examples/datasets/plot_volume_to_vertex.rst.txt
index fd1c04e3c..e19aeeb7a 100644
--- a/_sources/auto_examples/datasets/plot_volume_to_vertex.rst.txt
+++ b/_sources/auto_examples/datasets/plot_volume_to_vertex.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_datasets_plot_volume_to_vertex.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_datasets_plot_volume_to_vertex.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -52,19 +52,13 @@ vertex mapping of that data. You can plot both of these as you normally would.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5131): CRITICAL **: 01:26:57.515: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5131): CRITICAL **: 01:26:57.515: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5131): CRITICAL **: 01:26:57.515: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
     Generating a flatmap cache
-    Failed to get connection
-    ** (inkscape:5134): CRITICAL **: 01:26:59.615: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5134): CRITICAL **: 01:26:59.615: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5134): CRITICAL **: 01:26:59.615: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -73,7 +67,7 @@ vertex mapping of that data. You can plot both of these as you normally would.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -104,28 +98,22 @@ vertex mapping of that data. You can plot both of these as you normally would.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  7.047 seconds)
+   **Total running time of the script:** (0 minutes 5.438 seconds)
 
 
 .. _sphx_glr_download_auto_examples_datasets_plot_volume_to_vertex.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_volume_to_vertex.py <plot_volume_to_vertex.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_volume_to_vertex.ipynb <plot_volume_to_vertex.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_volume_to_vertex.ipynb <plot_volume_to_vertex.ipynb>`
+      :download:`Download Python source code: plot_volume_to_vertex.py <plot_volume_to_vertex.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/datasets/sg_execution_times.rst.txt b/_sources/auto_examples/datasets/sg_execution_times.rst.txt
index 940064ea3..d0932ae9e 100644
--- a/_sources/auto_examples/datasets/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/datasets/sg_execution_times.rst.txt
@@ -3,24 +3,56 @@
 
 .. _sphx_glr_auto_examples_datasets_sg_execution_times:
 
+
 Computation times
 =================
-**01:03.893** total execution time for **auto_examples_datasets** files:
-
-+----------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_datasets_plot_dataset_arithmetic.py` (``plot_dataset_arithmetic.py``) | 00:18.572 | 0.0 MB |
-+----------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_datasets_plot_volumeRGB.py` (``plot_volumeRGB.py``)                   | 00:17.227 | 0.0 MB |
-+----------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_datasets_plot_volume_to_vertex.py` (``plot_volume_to_vertex.py``)     | 00:07.047 | 0.0 MB |
-+----------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_datasets_plot_volume.py` (``plot_volume.py``)                         | 00:06.435 | 0.0 MB |
-+----------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_datasets_plot_volume2D.py` (``plot_volume2D.py``)                     | 00:06.264 | 0.0 MB |
-+----------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_datasets_plot_vertex.py` (``plot_vertex.py``)                         | 00:04.388 | 0.0 MB |
-+----------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_datasets_plot_vertexRGB.py` (``plot_vertexRGB.py``)                   | 00:01.988 | 0.0 MB |
-+----------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_datasets_plot_vertex2D.py` (``plot_vertex2D.py``)                     | 00:01.972 | 0.0 MB |
-+----------------------------------------------------------------------------------------------------+-----------+--------+
+**00:47.006** total execution time for 8 files **from auto_examples/datasets**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_dataset_arithmetic.py` (``plot_dataset_arithmetic.py``)
+     - 00:14.861
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_volumeRGB.py` (``plot_volumeRGB.py``)
+     - 00:11.075
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_volume_to_vertex.py` (``plot_volume_to_vertex.py``)
+     - 00:05.438
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_volume.py` (``plot_volume.py``)
+     - 00:04.868
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_volume2D.py` (``plot_volume2D.py``)
+     - 00:04.602
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_vertex.py` (``plot_vertex.py``)
+     - 00:03.304
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_vertex2D.py` (``plot_vertex2D.py``)
+     - 00:01.433
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_vertexRGB.py` (``plot_vertexRGB.py``)
+     - 00:01.425
+     - 0.0
diff --git a/_sources/auto_examples/fsaverage/index.rst.txt b/_sources/auto_examples/fsaverage/index.rst.txt
new file mode 100644
index 000000000..81a6e42b3
--- /dev/null
+++ b/_sources/auto_examples/fsaverage/index.rst.txt
@@ -0,0 +1,42 @@
+
+
+.. _sphx_glr_auto_examples_fsaverage:
+
+Examples with fsaverage
+------------------------------
+
+Examples showing how to use PyCortex to visualize data on fsaverage.
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how data in a lower resolution fsaverage template  (e.g., fsaverage5 or fsav...">
+
+.. only:: html
+
+  .. image:: /auto_examples/fsaverage/images/thumb/sphx_glr_upsample_to_fsaverage_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_fsaverage_upsample_to_fsaverage.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Upsample data from a lower resolution fsaverage template to fsaverage for visualization</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
+
+
+.. toctree::
+   :hidden:
+
+   /auto_examples/fsaverage/upsample_to_fsaverage
+
diff --git a/_sources/auto_examples/fsaverage/sg_execution_times.rst.txt b/_sources/auto_examples/fsaverage/sg_execution_times.rst.txt
new file mode 100644
index 000000000..bd43cb0da
--- /dev/null
+++ b/_sources/auto_examples/fsaverage/sg_execution_times.rst.txt
@@ -0,0 +1,37 @@
+
+:orphan:
+
+.. _sphx_glr_auto_examples_fsaverage_sg_execution_times:
+
+
+Computation times
+=================
+**00:00.000** total execution time for 1 file **from auto_examples/fsaverage**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_fsaverage_upsample_to_fsaverage.py` (``upsample_to_fsaverage.py``)
+     - 00:00.000
+     - 0.0
diff --git a/_sources/auto_examples/fsaverage/upsample_to_fsaverage.rst.txt b/_sources/auto_examples/fsaverage/upsample_to_fsaverage.rst.txt
new file mode 100644
index 000000000..2c8156818
--- /dev/null
+++ b/_sources/auto_examples/fsaverage/upsample_to_fsaverage.rst.txt
@@ -0,0 +1,81 @@
+
+.. DO NOT EDIT.
+.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
+.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
+.. "auto_examples/fsaverage/upsample_to_fsaverage.py"
+.. LINE NUMBERS ARE GIVEN BELOW.
+
+.. only:: html
+
+    .. note::
+        :class: sphx-glr-download-link-note
+
+        :ref:`Go to the end <sphx_glr_download_auto_examples_fsaverage_upsample_to_fsaverage.py>`
+        to download the full example code
+
+.. rst-class:: sphx-glr-example-title
+
+.. _sphx_glr_auto_examples_fsaverage_upsample_to_fsaverage.py:
+
+
+===================
+Upsample data from a lower resolution fsaverage template to fsaverage for visualization
+===================
+
+This example shows how data in a lower resolution fsaverage template 
+(e.g., fsaverage5 or fsaverage6) can be upsampled to the high resolution fsaverage 
+template for visualization.
+
+.. GENERATED FROM PYTHON SOURCE LINES 10-37
+
+.. code-block:: Python
+
+
+    import matplotlib.pyplot as plt
+    import numpy as np
+
+    import cortex
+
+    subject = "fsaverage"
+
+    # First we check if the fsaverage template is already in the pycortex filestore. If not,
+    # we download the template from the web and add it to the filestore.
+    if subject not in cortex.db.subjects:
+        cortex.download_subject(subject)
+
+    # Next we create some data on fsaverage5. Each hemisphere has 10242 vertices.
+    n_vertices_fsaverage5 = 10242
+    data_fs5 = np.arange(1, n_vertices_fsaverage5 + 1)
+    # We concatenate the data to itself to create a vector of length 20484, corresponding to
+    # the two hemispheres together.
+    data_fs5 = np.concatenate((data_fs5, data_fs5))
+    # Finally, we upsample the data to fsaverage.
+    data_fs7 = cortex.freesurfer.upsample_to_fsaverage(data_fs5, "fsaverage5")
+
+    # Now that the data is in the fsaverage template, we can visualize it in PyCortex as any
+    # other vertex dataset.
+    vtx = cortex.Vertex(data_fs7, subject, vmin=0, vmax=n_vertices_fsaverage5, cmap="turbo")
+    cortex.quickshow(vtx, with_curvature=False, with_colorbar=False)
+    plt.show()
+
+
+.. _sphx_glr_download_auto_examples_fsaverage_upsample_to_fsaverage.py:
+
+.. only:: html
+
+  .. container:: sphx-glr-footer sphx-glr-footer-example
+
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
+
+      :download:`Download Jupyter notebook: upsample_to_fsaverage.ipynb <upsample_to_fsaverage.ipynb>`
+
+    .. container:: sphx-glr-download sphx-glr-download-python
+
+      :download:`Download Python source code: upsample_to_fsaverage.py <upsample_to_fsaverage.py>`
+
+
+.. only:: html
+
+ .. rst-class:: sphx-glr-signature
+
+    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_
diff --git a/_sources/auto_examples/import_surface/import_fmriprep.rst.txt b/_sources/auto_examples/import_surface/import_fmriprep.rst.txt
index 526a71af8..87a0f0510 100644
--- a/_sources/auto_examples/import_surface/import_fmriprep.rst.txt
+++ b/_sources/auto_examples/import_surface/import_fmriprep.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_import_surface_import_fmriprep.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_import_surface_import_fmriprep.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -31,7 +31,7 @@ NB: `cortex.fmriprep` is a work-in-progress and cannot currently handle multiple
 
 .. GENERATED FROM PYTHON SOURCE LINES 13-36
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -58,30 +58,19 @@ NB: `cortex.fmriprep` is a work-in-progress and cannot currently handle multiple
     cortex.webgl.show(ds)
 
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_import_surface_import_fmriprep.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: import_fmriprep.py <import_fmriprep.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: import_fmriprep.ipynb <import_fmriprep.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: import_fmriprep.ipynb <import_fmriprep.ipynb>`
+      :download:`Download Python source code: import_fmriprep.py <import_fmriprep.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/import_surface/index.rst.txt b/_sources/auto_examples/import_surface/index.rst.txt
new file mode 100644
index 000000000..ba9eebe77
--- /dev/null
+++ b/_sources/auto_examples/import_surface/index.rst.txt
@@ -0,0 +1,45 @@
+
+
+.. _sphx_glr_auto_examples_import_surface:
+
+Importing Surfaces Examples
+------------------------------
+
+Examples demonstrating how to import surfraces from other software (e.g.
+FreeSurfer, fmriprep).
+
+
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Recently, many people have start to use fmriprep as a complete preprocessing workflow of anatom...">
+
+.. only:: html
+
+  .. image:: /auto_examples/import_surface/images/thumb/sphx_glr_import_fmriprep_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_import_surface_import_fmriprep.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Import fmriprep output</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
+
+
+.. toctree::
+   :hidden:
+
+   /auto_examples/import_surface/import_fmriprep
+
diff --git a/_sources/auto_examples/import_surface/sg_execution_times.rst.txt b/_sources/auto_examples/import_surface/sg_execution_times.rst.txt
new file mode 100644
index 000000000..1b120f1cb
--- /dev/null
+++ b/_sources/auto_examples/import_surface/sg_execution_times.rst.txt
@@ -0,0 +1,37 @@
+
+:orphan:
+
+.. _sphx_glr_auto_examples_import_surface_sg_execution_times:
+
+
+Computation times
+=================
+**00:00.000** total execution time for 1 file **from auto_examples/import_surface**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_import_surface_import_fmriprep.py` (``import_fmriprep.py``)
+     - 00:00.000
+     - 0.0
diff --git a/_sources/auto_examples/index.rst.txt b/_sources/auto_examples/index.rst.txt
index ea26267f4..cb5285cca 100644
--- a/_sources/auto_examples/index.rst.txt
+++ b/_sources/auto_examples/index.rst.txt
@@ -1,9 +1,5 @@
 :orphan:
 
-
-
-.. _sphx_glr_auto_examples:
-
 .. _general_examples:
 
 Example Gallery
@@ -14,13 +10,15 @@ Example Gallery
    :depth: 2
 
 
+
 .. raw:: html
 
-    <div class="sphx-glr-clear"></div>
+    <div class="sphx-glr-thumbnails">
 
 
+.. raw:: html
 
-.. _sphx_glr_auto_examples_datasets:
+    </div>
 
 Datasets Examples
 ------------------------------
@@ -30,180 +28,182 @@ Examples demonstrating how to create, manipulate, plot datasets.
 
 
 
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/datasets/images/thumb/sphx_glr_plot_dataset_arithmetic_thumb.png
-     :alt: Dataset Arithmetic
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_dataset_arithmetic_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_datasets_plot_dataset_arithmetic.py`
+  :ref:`sphx_glr_auto_examples_datasets_plot_dataset_arithmetic.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Dataset Arithmetic</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/datasets/plot_dataset_arithmetic
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="In order to move from Volume data to Vertex data, you start with data from voxels and then crea...">
 
 .. only:: html
 
- .. figure:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume_to_vertex_thumb.png
-     :alt: Map from Volume to Vertex Data
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume_to_vertex_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_datasets_plot_volume_to_vertex.py`
+  :ref:`sphx_glr_auto_examples_datasets_plot_volume_to_vertex.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Map from Volume to Vertex Data</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/datasets/plot_volume_to_vertex
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume_thumb.png
-     :alt: Plot Volume Data
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_datasets_plot_volume.py`
+  :ref:`sphx_glr_auto_examples_datasets_plot_volume.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot Volume Data</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/datasets/plot_volume
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This plots example vertex data onto an example subject, S1, onto a flatmap using quickflat. In ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertex_thumb.png
-     :alt: Plot Vertex Data
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertex_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_datasets_plot_vertex.py`
+  :ref:`sphx_glr_auto_examples_datasets_plot_vertex.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot Vertex Data</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/datasets/plot_vertex
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This plots example 2D vertex data onto an example subject, S1, onto a flatmap using quickflat. ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertex2D_thumb.png
-     :alt: Plot 2D Vertex Data
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertex2D_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_datasets_plot_vertex2D.py`
+  :ref:`sphx_glr_auto_examples_datasets_plot_vertex2D.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot 2D Vertex Data</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/datasets/plot_vertex2D
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume2D_thumb.png
-     :alt: Plot 2D Volume Data
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volume2D_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_datasets_plot_volume2D.py`
+  :ref:`sphx_glr_auto_examples_datasets_plot_volume2D.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot 2D Volume Data</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/datasets/plot_volume2D
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This plots example RGB vertex data onto an example subject, S1, onto a flatmap using quickflat....">
 
 .. only:: html
 
- .. figure:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertexRGB_thumb.png
-     :alt: Plot RGB Vertex Data
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_vertexRGB_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_datasets_plot_vertexRGB.py`
+  :ref:`sphx_glr_auto_examples_datasets_plot_vertexRGB.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot RGB Vertex Data</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/datasets/plot_vertexRGB
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This plots an example RGB dataset onto an example subject, S1, onto a flatmap using quickflat. ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volumeRGB_thumb.png
-     :alt: Plot RGB Volume Data
+  .. image:: /auto_examples/datasets/images/thumb/sphx_glr_plot_volumeRGB_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_datasets_plot_volumeRGB.py`
+  :ref:`sphx_glr_auto_examples_datasets_plot_volumeRGB.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot RGB Volume Data</div>
     </div>
 
 
-.. toctree::
-   :hidden:
+.. raw:: html
+
+    </div>
+
+Examples with fsaverage
+------------------------------
+
+Examples showing how to use PyCortex to visualize data on fsaverage.
+
 
-   /auto_examples/datasets/plot_volumeRGB
 .. raw:: html
 
-    <div class="sphx-glr-clear"></div>
+    <div class="sphx-glr-thumbnails">
 
 
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how data in a lower resolution fsaverage template  (e.g., fsaverage5 or fsav...">
+
+.. only:: html
 
-.. _sphx_glr_auto_examples_import_surface:
+  .. image:: /auto_examples/fsaverage/images/thumb/sphx_glr_upsample_to_fsaverage_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_fsaverage_upsample_to_fsaverage.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Upsample data from a lower resolution fsaverage template to fsaverage for visualization</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
 
 Importing Surfaces Examples
 ------------------------------
@@ -214,33 +214,31 @@ FreeSurfer, fmriprep).
 
 
 
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Recently, many people have start to use fmriprep as a complete preprocessing workflow of anatom...">
 
 .. only:: html
 
- .. figure:: /auto_examples/import_surface/images/thumb/sphx_glr_import_fmriprep_thumb.png
-     :alt: Import fmriprep output
+  .. image:: /auto_examples/import_surface/images/thumb/sphx_glr_import_fmriprep_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_import_surface_import_fmriprep.py`
+  :ref:`sphx_glr_auto_examples_import_surface_import_fmriprep.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Import fmriprep output</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/import_surface/import_fmriprep
 .. raw:: html
 
-    <div class="sphx-glr-clear"></div>
-
-
-
-.. _sphx_glr_auto_examples_quickflat:
+    </div>
 
 Quickflat Examples
 ------------------------------
@@ -250,264 +248,218 @@ Examples demonstrating how to create flatmaps.
 
 
 
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="The sulci are defined in a sub-layer of the sulci layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg.">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_sulci_thumb.png
-     :alt: Plot sulci on the flatmap
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_sulci_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_sulci.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_sulci.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot sulci on the flatmap</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_sulci
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="A dropout region is a region with very low EPI signal. In pycortex a crosshatch is used to disp...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_dropout_thumb.png
-     :alt: Plot dropout regions on the flatmap
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_dropout_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_dropout.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_dropout.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot dropout regions on the flatmap</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_dropout
-
 .. raw:: html
 
-    <div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as SVG file.">
+    <div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as PNG file.">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_svg_thumb.png
-     :alt: Save a 2D static flatmap as SVG
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_png_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_make_svg.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_make_png.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Save a 2D static flatmap as PNG</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_make_svg
-
 .. raw:: html
 
-    <div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as PNG file.">
+    <div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as SVG file.">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_png_thumb.png
-     :alt: Save a 2D static flatmap as PNG
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_svg_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_make_png.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_make_svg.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Save a 2D static flatmap as SVG</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_make_png
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Cutouts are manually generated cuts of the cortical surface to highlight a region of interest.">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_cutouts_thumb.png
-     :alt: Plot cutouts on the flatmap
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_cutouts_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_cutouts.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_cutouts.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot cutouts on the flatmap</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_cutouts
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="ROIs are defined as sub-layers of the roi layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_rois_thumb.png
-     :alt: Plot ROIs on the flatmap
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_rois_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_rois.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_rois.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot ROIs on the flatmap</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_rois
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Show lines connecting vertices on the flatmap that are actually within the same voxels in a giv...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_connected_vertices_thumb.png
-     :alt: Plot which vertices are inside the same voxels
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_connected_vertices_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_connected_vertices.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_connected_vertices.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot which vertices are inside the same voxels</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_connected_vertices
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="A convenient way to compare two flat maps (e.g., prediction performance or tuning weights) is t...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_gif_thumb.png
-     :alt: Animate a series of volumes as a GIF
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_gif_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_make_gif.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_make_gif.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Animate a series of volumes as a GIF</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_make_gif
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="By default, pycortex quickshow averages across the thickness of the cortex for each pixel in th...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_thickness_nanmean_thumb.png
-     :alt: Ignore NaN (not-a-number) values in thickness mapping
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_thickness_nanmean_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_thickness_nanmean.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_thickness_nanmean.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Ignore NaN (not-a-number) values in thickness mapping</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_thickness_nanmean
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Sometimes it is useful to create a flatmap that is zoomed in one just a single ROI. The locatio...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_zoom_to_roi_thumb.png
-     :alt: Plotting a zoomed view of one ROI
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_zoom_to_roi_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_zoom_to_roi.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_zoom_to_roi.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plotting a zoomed view of one ROI</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_zoom_to_roi
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="quickflat visualizations use matplotlib to generate figure-quality 2D flatmaps.">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_figure_thumb.png
-     :alt: Plot a 2D static flatmap
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_figure_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_make_figure.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_make_figure.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot a 2D static flatmap</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_make_figure
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="The way flatmap plotting works in pycortex is to create different image layers (data, ROIs, sul...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_advanced_compositing_thumb.png
-     :alt: Plot with advanced compositing
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_advanced_compositing_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickflat_plot_advanced_compositing.py`
+  :ref:`sphx_glr_auto_examples_quickflat_plot_advanced_compositing.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot with advanced compositing</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickflat/plot_advanced_compositing
 .. raw:: html
 
-    <div class="sphx-glr-clear"></div>
-
-
-
-.. _sphx_glr_auto_examples_quickstart:
+    </div>
 
 Quickstart Examples
 ------------------------------
@@ -517,75 +469,65 @@ Examples demonstrating how to get started with pycortex.
 
 
 
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain in a web viewer. In ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickstart/images/thumb/sphx_glr_retinotopy_webgl_thumb.png
-     :alt: Plot Example Retinotopy in Web Viewer
+  .. image:: /auto_examples/quickstart/images/thumb/sphx_glr_retinotopy_webgl_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickstart_retinotopy_webgl.py`
+  :ref:`sphx_glr_auto_examples_quickstart_retinotopy_webgl.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot Example Retinotopy in Web Viewer</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickstart/retinotopy_webgl
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Easily locating your config file and filestore locations. This comes in useful when things don&#x27;...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickstart/images/thumb/sphx_glr_show_config_thumb.png
-     :alt: Finding out where the config and filestore are
+  .. image:: /auto_examples/quickstart/images/thumb/sphx_glr_show_config_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickstart_show_config.py`
+  :ref:`sphx_glr_auto_examples_quickstart_show_config.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Finding out where the config and filestore are</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickstart/show_config
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain on a flatmap. In ord...">
 
 .. only:: html
 
- .. figure:: /auto_examples/quickstart/images/thumb/sphx_glr_plot_retinotopy_flatmap_thumb.png
-     :alt: Plot Example Retinotopy Flatmaps
+  .. image:: /auto_examples/quickstart/images/thumb/sphx_glr_plot_retinotopy_flatmap_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_quickstart_plot_retinotopy_flatmap.py`
+  :ref:`sphx_glr_auto_examples_quickstart_plot_retinotopy_flatmap.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot Example Retinotopy Flatmaps</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/quickstart/plot_retinotopy_flatmap
 .. raw:: html
 
-    <div class="sphx-glr-clear"></div>
-
-
-
-.. _sphx_glr_auto_examples_surface_analyses:
+    </div>
 
 Surface Analysis Examples
 ------------------------------
@@ -595,138 +537,116 @@ Examples demonstrating operations and analyses done on brain surfaces.
 
 
 
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si...">
 
 .. only:: html
 
- .. figure:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_tissots_indicatrix_thumb.png
-     :alt: Tissot's Indicatrix
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_tissots_indicatrix_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_surface_analyses_plot_tissots_indicatrix.py`
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_tissots_indicatrix.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Tissot's Indicatrix</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/surface_analyses/plot_tissots_indicatrix
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This will plot a geodesic path between two vertices on the cortical surface. This path is based...">
 
 .. only:: html
 
- .. figure:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_geodesic_path_thumb.png
-     :alt: Plotting Geodesic Paths
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_geodesic_path_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_path.py`
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_path.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plotting Geodesic Paths</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/surface_analyses/plot_geodesic_path
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="This plots the distances (in mm) between a vertex or set of vertices and all other vertices on ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_geodesic_distance_thumb.png
-     :alt: Plotting Geodesic Distances
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_geodesic_distance_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_distance.py`
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_distance.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plotting Geodesic Distances</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/surface_analyses/plot_geodesic_distance
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si...">
 
 .. only:: html
 
- .. figure:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_flatmap_distortion_thumb.png
-     :alt: Flatmap Distortion
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_flatmap_distortion_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_surface_analyses_plot_flatmap_distortion.py`
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_flatmap_distortion.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Flatmap Distortion</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/surface_analyses/plot_flatmap_distortion
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Subsurfaces can be used for efficient operations on subsets of cortical surface">
 
 .. only:: html
 
- .. figure:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_subsurfaces_thumb.png
-     :alt: Plot and Use Subsurface Tools
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_subsurfaces_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_surface_analyses_plot_subsurfaces.py`
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_subsurfaces.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Plot and Use Subsurface Tools</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/surface_analyses/plot_subsurfaces
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to interpolate data from a sparse collection of points to all the p...">
 
 .. only:: html
 
- .. figure:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_interpolate_data_thumb.png
-     :alt: Interpolate Data
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_interpolate_data_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_surface_analyses_plot_interpolate_data.py`
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_interpolate_data.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Interpolate Data</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/surface_analyses/plot_interpolate_data
 .. raw:: html
 
-    <div class="sphx-glr-clear"></div>
-
-
-
-.. _sphx_glr_auto_examples_utils:
+    </div>
 
 Utility Examples
 ------------------------------
@@ -736,180 +656,150 @@ Examples demonstrating how to do all sorts of beautiful things using pycortex.
 
 
 
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to get the vertices that are inside an ROI that was defined in the ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/utils/images/thumb/sphx_glr_plot_get_roi_vertices_thumb.png
-     :alt: Get Vertices for an ROI
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_get_roi_vertices_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_utils_plot_get_roi_vertices.py`
+  :ref:`sphx_glr_auto_examples_utils_plot_get_roi_vertices.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Get Vertices for an ROI</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/utils/plot_get_roi_vertices
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="The utility function get_vox_dist returns the distance from each voxel in some space to the nea...">
 
 .. only:: html
 
- .. figure:: /auto_examples/utils/images/thumb/sphx_glr_plot_voxel_distance_from_surface_thumb.png
-     :alt: Voxel distance from surface
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_voxel_distance_from_surface_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_utils_plot_voxel_distance_from_surface.py`
+  :ref:`sphx_glr_auto_examples_utils_plot_voxel_distance_from_surface.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Voxel distance from surface</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/utils/plot_voxel_distance_from_surface
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="The function mosaic plots all of the slices in a volume in a matplotlib figure. Good for quick ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/utils/images/thumb/sphx_glr_plot_mosaic_thumb.png
-     :alt: Mosaic plot
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_mosaic_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_utils_plot_mosaic.py`
+  :ref:`sphx_glr_auto_examples_utils_plot_mosaic.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Mosaic plot</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/utils/plot_mosaic
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s...">
 
 .. only:: html
 
- .. figure:: /auto_examples/utils/images/thumb/sphx_glr_subject_to_mni_thumb.png
-     :alt: Transform from Subject to MNI Space
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_subject_to_mni_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_utils_subject_to_mni.py`
+  :ref:`sphx_glr_auto_examples_utils_subject_to_mni.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Transform from Subject to MNI Space</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/utils/subject_to_mni
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Get proportion of each voxel that exists within a named ROI (this  constitutes a probability ma...">
 
 .. only:: html
 
- .. figure:: /auto_examples/utils/images/thumb/sphx_glr_plot_roi_voxel_mask_thumb.png
-     :alt: Get ROI Voxel Mask
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_roi_voxel_mask_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_mask.py`
+  :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_mask.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Get ROI Voxel Mask</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/utils/plot_roi_voxel_mask
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s...">
 
 .. only:: html
 
- .. figure:: /auto_examples/utils/images/thumb/sphx_glr_mni_to_subject_thumb.png
-     :alt: Transform from MNI to Subject Space
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_mni_to_subject_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_utils_mni_to_subject.py`
+  :ref:`sphx_glr_auto_examples_utils_mni_to_subject.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Transform from MNI to Subject Space</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/utils/mni_to_subject
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="The function cortex.export.plot_panels plots a number of 3d views of a given volume, in the sam...">
 
 .. only:: html
 
- .. figure:: /auto_examples/utils/images/thumb/sphx_glr_multi_panels_plots_thumb.png
-     :alt: Multi-panels figures
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_multi_panels_plots_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_utils_multi_panels_plots.py`
+  :ref:`sphx_glr_auto_examples_utils_multi_panels_plots.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Multi-panels figures</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/utils/multi_panels_plots
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Create an index volume (similar to the aseg masks in freesurfer) with a different  integer inde...">
 
 .. only:: html
 
- .. figure:: /auto_examples/utils/images/thumb/sphx_glr_plot_roi_voxel_index_volume_thumb.png
-     :alt: Get ROI Index Volume
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_roi_voxel_index_volume_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_index_volume.py`
+  :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_index_volume.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Get ROI Index Volume</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/utils/plot_roi_voxel_index_volume
 .. raw:: html
 
-    <div class="sphx-glr-clear"></div>
-
-
-
-.. _sphx_glr_auto_examples_webgl:
+    </div>
 
 WebGL Examples
 ------------------------------
@@ -919,131 +809,127 @@ Examples demonstrating how to make beautiful interactive 3-D viewers
 
 
 
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser">
 
 .. only:: html
 
- .. figure:: /auto_examples/webgl/images/thumb/sphx_glr_single_dataset_thumb.png
-     :alt: Create a 3D WebGL Viewer
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_single_dataset_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_webgl_single_dataset.py`
+  :ref:`sphx_glr_auto_examples_webgl_single_dataset.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Create a 3D WebGL Viewer</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/webgl/single_dataset
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="A static viewer is a brain viewer that exists permanently on a filesystem">
 
 .. only:: html
 
- .. figure:: /auto_examples/webgl/images/thumb/sphx_glr_static_thumb.png
-     :alt: Create a static viewer
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_static_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_webgl_static.py`
+  :ref:`sphx_glr_auto_examples_webgl_static.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Create a static viewer</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/webgl/static
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/webgl/images/thumb/sphx_glr_dynamic_with_custom_template_thumb.png
-     :alt: Dynamic viewer with html template
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_dynamic_with_custom_template_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_webgl_dynamic_with_custom_template.py`
+  :ref:`sphx_glr_auto_examples_webgl_dynamic_with_custom_template.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Dynamic viewer with html template</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/webgl/dynamic_with_custom_template
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ...">
 
 .. only:: html
 
- .. figure:: /auto_examples/webgl/images/thumb/sphx_glr_static_with_custom_template_thumb.png
-     :alt: Static viewer with html template
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_static_with_custom_template_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_webgl_static_with_custom_template.py`
+  :ref:`sphx_glr_auto_examples_webgl_static_with_custom_template.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Static viewer with html template</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/webgl/static_with_custom_template
-
 .. raw:: html
 
     <div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser">
 
 .. only:: html
 
- .. figure:: /auto_examples/webgl/images/thumb/sphx_glr_multiple_datasets_thumb.png
-     :alt: Create a 3D WebGL Viewer with Multiple Datasets
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_multiple_datasets_thumb.png
+    :alt:
 
-     :ref:`sphx_glr_auto_examples_webgl_multiple_datasets.py`
+  :ref:`sphx_glr_auto_examples_webgl_multiple_datasets.py`
 
 .. raw:: html
 
+      <div class="sphx-glr-thumbnail-title">Create a 3D WebGL Viewer with Multiple Datasets</div>
     </div>
 
 
-.. toctree::
-   :hidden:
-
-   /auto_examples/webgl/multiple_datasets
 .. raw:: html
 
-    <div class="sphx-glr-clear"></div>
+    </div>
 
 
+.. toctree::
+   :hidden:
+   :includehidden:
 
-.. only :: html
 
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-gallery
+   /auto_examples/datasets/index.rst
+   /auto_examples/fsaverage/index.rst
+   /auto_examples/import_surface/index.rst
+   /auto_examples/quickflat/index.rst
+   /auto_examples/quickstart/index.rst
+   /auto_examples/surface_analyses/index.rst
+   /auto_examples/utils/index.rst
+   /auto_examples/webgl/index.rst
 
 
-  .. container:: sphx-glr-download sphx-glr-download-python
+.. only:: html
 
-    :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`
+  .. container:: sphx-glr-footer sphx-glr-footer-gallery
 
+    .. container:: sphx-glr-download sphx-glr-download-python
 
+      :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
-    :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`
+      :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/index.rst.txt b/_sources/auto_examples/quickflat/index.rst.txt
new file mode 100644
index 000000000..2477d0ef9
--- /dev/null
+++ b/_sources/auto_examples/quickflat/index.rst.txt
@@ -0,0 +1,242 @@
+
+
+.. _sphx_glr_auto_examples_quickflat:
+
+Quickflat Examples
+------------------------------
+
+Examples demonstrating how to create flatmaps.
+
+
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="The sulci are defined in a sub-layer of the sulci layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg.">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_sulci_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_sulci.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot sulci on the flatmap</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="A dropout region is a region with very low EPI signal. In pycortex a crosshatch is used to disp...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_dropout_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_dropout.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot dropout regions on the flatmap</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as PNG file.">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_png_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_make_png.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Save a 2D static flatmap as PNG</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as SVG file.">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_svg_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_make_svg.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Save a 2D static flatmap as SVG</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Cutouts are manually generated cuts of the cortical surface to highlight a region of interest.">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_cutouts_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_cutouts.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot cutouts on the flatmap</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="ROIs are defined as sub-layers of the roi layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_rois_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_rois.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot ROIs on the flatmap</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Show lines connecting vertices on the flatmap that are actually within the same voxels in a giv...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_connected_vertices_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_connected_vertices.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot which vertices are inside the same voxels</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="A convenient way to compare two flat maps (e.g., prediction performance or tuning weights) is t...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_gif_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_make_gif.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Animate a series of volumes as a GIF</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="By default, pycortex quickshow averages across the thickness of the cortex for each pixel in th...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_thickness_nanmean_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_thickness_nanmean.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Ignore NaN (not-a-number) values in thickness mapping</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Sometimes it is useful to create a flatmap that is zoomed in one just a single ROI. The locatio...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_zoom_to_roi_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_zoom_to_roi.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plotting a zoomed view of one ROI</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="quickflat visualizations use matplotlib to generate figure-quality 2D flatmaps.">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_make_figure_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_make_figure.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot a 2D static flatmap</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="The way flatmap plotting works in pycortex is to create different image layers (data, ROIs, sul...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickflat/images/thumb/sphx_glr_plot_advanced_compositing_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickflat_plot_advanced_compositing.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot with advanced compositing</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
+
+
+.. toctree::
+   :hidden:
+
+   /auto_examples/quickflat/plot_sulci
+   /auto_examples/quickflat/plot_dropout
+   /auto_examples/quickflat/plot_make_png
+   /auto_examples/quickflat/plot_make_svg
+   /auto_examples/quickflat/plot_cutouts
+   /auto_examples/quickflat/plot_rois
+   /auto_examples/quickflat/plot_connected_vertices
+   /auto_examples/quickflat/plot_make_gif
+   /auto_examples/quickflat/plot_thickness_nanmean
+   /auto_examples/quickflat/plot_zoom_to_roi
+   /auto_examples/quickflat/plot_make_figure
+   /auto_examples/quickflat/plot_advanced_compositing
+
diff --git a/_sources/auto_examples/quickflat/plot_advanced_compositing.rst.txt b/_sources/auto_examples/quickflat/plot_advanced_compositing.rst.txt
index a914b5323..f3d916b62 100644
--- a/_sources/auto_examples/quickflat/plot_advanced_compositing.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_advanced_compositing.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_advanced_compositing.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_advanced_compositing.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -40,22 +40,14 @@ quickflat.composite sub-module.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5421): CRITICAL **: 01:31:23.379: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5421): CRITICAL **: 01:31:23.379: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5421): CRITICAL **: 01:31:23.379: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5424): CRITICAL **: 01:31:24.128: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5424): CRITICAL **: 01:31:24.128: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5424): CRITICAL **: 01:31:24.128: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5427): CRITICAL **: 01:31:24.950: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5427): CRITICAL **: 01:31:24.950: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5427): CRITICAL **: 01:31:24.950: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -64,7 +56,7 @@ quickflat.composite sub-module.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -106,28 +98,22 @@ quickflat.composite sub-module.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  5.141 seconds)
+   **Total running time of the script:** (0 minutes 3.674 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_advanced_compositing.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_advanced_compositing.py <plot_advanced_compositing.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_advanced_compositing.ipynb <plot_advanced_compositing.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_advanced_compositing.ipynb <plot_advanced_compositing.ipynb>`
+      :download:`Download Python source code: plot_advanced_compositing.py <plot_advanced_compositing.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_connected_vertices.rst.txt b/_sources/auto_examples/quickflat/plot_connected_vertices.rst.txt
index ba54c9b66..8ffc24f1d 100644
--- a/_sources/auto_examples/quickflat/plot_connected_vertices.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_connected_vertices.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_connected_vertices.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_connected_vertices.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -40,15 +40,11 @@ connecting lines.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
     Generating a flatmap cache
-    Failed to get connection
-    ** (inkscape:5268): CRITICAL **: 01:28:18.292: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5268): CRITICAL **: 01:28:18.293: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5268): CRITICAL **: 01:28:18.293: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
     Shared voxel array not found, generating...
     Caching mapper...
 
@@ -59,7 +55,7 @@ connecting lines.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import numpy as np
@@ -81,28 +77,22 @@ connecting lines.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 2 minutes  3.094 seconds)
+   **Total running time of the script:** (1 minutes 6.515 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_connected_vertices.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_connected_vertices.py <plot_connected_vertices.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_connected_vertices.ipynb <plot_connected_vertices.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_connected_vertices.ipynb <plot_connected_vertices.ipynb>`
+      :download:`Download Python source code: plot_connected_vertices.py <plot_connected_vertices.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_cutouts.rst.txt b/_sources/auto_examples/quickflat/plot_cutouts.rst.txt
index bb838042b..703b412d2 100644
--- a/_sources/auto_examples/quickflat/plot_cutouts.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_cutouts.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_cutouts.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_cutouts.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -43,18 +43,12 @@ name of the flatmap cutout defined in the `overlays.svg` file.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5248): CRITICAL **: 01:28:04.376: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5248): CRITICAL **: 01:28:04.376: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5248): CRITICAL **: 01:28:04.376: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5251): CRITICAL **: 01:28:05.243: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5251): CRITICAL **: 01:28:05.243: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5251): CRITICAL **: 01:28:05.243: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -63,7 +57,7 @@ name of the flatmap cutout defined in the `overlays.svg` file.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import numpy as np
@@ -84,28 +78,22 @@ name of the flatmap cutout defined in the `overlays.svg` file.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  2.057 seconds)
+   **Total running time of the script:** (0 minutes 1.811 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_cutouts.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_cutouts.py <plot_cutouts.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_cutouts.ipynb <plot_cutouts.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_cutouts.ipynb <plot_cutouts.ipynb>`
+      :download:`Download Python source code: plot_cutouts.py <plot_cutouts.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_dropout.rst.txt b/_sources/auto_examples/quickflat/plot_dropout.rst.txt
index 565c1b2c5..03d88ea04 100644
--- a/_sources/auto_examples/quickflat/plot_dropout.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_dropout.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_dropout.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_dropout.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -49,14 +49,10 @@ of this using the following formula:
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5219): CRITICAL **: 01:27:52.316: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5219): CRITICAL **: 01:27:52.317: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5219): CRITICAL **: 01:27:52.317: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -65,7 +61,7 @@ of this using the following formula:
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -84,28 +80,22 @@ of this using the following formula:
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  3.200 seconds)
+   **Total running time of the script:** (0 minutes 2.353 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_dropout.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_dropout.py <plot_dropout.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_dropout.ipynb <plot_dropout.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_dropout.ipynb <plot_dropout.ipynb>`
+      :download:`Download Python source code: plot_dropout.py <plot_dropout.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_make_figure.rst.txt b/_sources/auto_examples/quickflat/plot_make_figure.rst.txt
index bbeaab476..1322a9c3c 100644
--- a/_sources/auto_examples/quickflat/plot_make_figure.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_make_figure.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_make_figure.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_make_figure.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -92,30 +92,18 @@ This can be helpful if you think there is no reason that the
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5402): CRITICAL **: 01:31:11.806: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5402): CRITICAL **: 01:31:11.806: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5402): CRITICAL **: 01:31:11.806: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5406): CRITICAL **: 01:31:12.783: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5406): CRITICAL **: 01:31:12.783: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5406): CRITICAL **: 01:31:12.783: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5409): CRITICAL **: 01:31:13.881: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5409): CRITICAL **: 01:31:13.881: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5409): CRITICAL **: 01:31:13.881: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5412): CRITICAL **: 01:31:14.979: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5412): CRITICAL **: 01:31:14.979: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5412): CRITICAL **: 01:31:14.979: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5415): CRITICAL **: 01:31:16.268: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5415): CRITICAL **: 01:31:16.269: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5415): CRITICAL **: 01:31:16.269: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -124,7 +112,7 @@ This can be helpful if you think there is no reason that the
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import matplotlib.pyplot as plt
@@ -172,28 +160,22 @@ This can be helpful if you think there is no reason that the
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  11.182 seconds)
+   **Total running time of the script:** (0 minutes 8.499 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_make_figure.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_make_figure.py <plot_make_figure.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_make_figure.ipynb <plot_make_figure.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_make_figure.ipynb <plot_make_figure.ipynb>`
+      :download:`Download Python source code: plot_make_figure.py <plot_make_figure.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_make_gif.rst.txt b/_sources/auto_examples/quickflat/plot_make_gif.rst.txt
index 4cafc0822..7d6ebe91e 100644
--- a/_sources/auto_examples/quickflat/plot_make_gif.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_make_gif.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_make_gif.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_make_gif.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -28,7 +28,7 @@ to make an animated gif in which each frame is a flatmap.
 
 .. GENERATED FROM PYTHON SOURCE LINES 11-16
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import matplotlib.pyplot as plt
@@ -49,7 +49,7 @@ Create several pycortex Volumes
 
 .. GENERATED FROM PYTHON SOURCE LINES 19-23
 
-.. code-block:: default
+.. code-block:: Python
 
 
     volumes = {'first': cortex.Volume.random(subject='S1', xfmname='fullhead', vmin=-2, vmax=2, cmap="RdBu_r"),
@@ -69,7 +69,7 @@ Plot flat maps individually
 
 .. GENERATED FROM PYTHON SOURCE LINES 26-32
 
-.. code-block:: default
+.. code-block:: Python
 
 
     _ = cortex.quickflat.make_figure(volumes['first'], colorbar_location="right")
@@ -100,18 +100,12 @@ Plot flat maps individually
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5327): CRITICAL **: 01:30:14.896: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5327): CRITICAL **: 01:30:14.896: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5327): CRITICAL **: 01:30:14.896: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5332): CRITICAL **: 01:30:15.933: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5332): CRITICAL **: 01:30:15.933: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5332): CRITICAL **: 01:30:15.933: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -123,7 +117,7 @@ Generate an animated gif that switches between frames every 1.5 seconds
 
 .. GENERATED FROM PYTHON SOURCE LINES 35-39
 
-.. code-block:: default
+.. code-block:: Python
 
 
     filename = "./flatmap_comparison.gif"
@@ -135,18 +129,12 @@ Generate an animated gif that switches between frames every 1.5 seconds
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5337): CRITICAL **: 01:30:19.261: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5337): CRITICAL **: 01:30:19.261: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5337): CRITICAL **: 01:30:19.262: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5341): CRITICAL **: 01:30:21.048: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5341): CRITICAL **: 01:30:21.049: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5341): CRITICAL **: 01:30:21.049: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -158,7 +146,7 @@ Display gif inline in an IPython notebook
 
 .. GENERATED FROM PYTHON SOURCE LINES 42-52
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import io
@@ -176,18 +164,12 @@ Display gif inline in an IPython notebook
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5347): CRITICAL **: 01:30:23.595: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5347): CRITICAL **: 01:30:23.595: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5347): CRITICAL **: 01:30:23.595: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5351): CRITICAL **: 01:30:25.381: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5351): CRITICAL **: 01:30:25.381: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5351): CRITICAL **: 01:30:25.381: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
     <IPython.core.display.Image object>
 
@@ -200,28 +182,22 @@ Display gif inline in an IPython notebook
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  12.570 seconds)
+   **Total running time of the script:** (0 minutes 9.046 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_make_gif.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_make_gif.py <plot_make_gif.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_make_gif.ipynb <plot_make_gif.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_make_gif.ipynb <plot_make_gif.ipynb>`
+      :download:`Download Python source code: plot_make_gif.py <plot_make_gif.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_make_png.rst.txt b/_sources/auto_examples/quickflat/plot_make_png.rst.txt
index efb68d7be..5325fdda3 100644
--- a/_sources/auto_examples/quickflat/plot_make_png.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_make_png.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_make_png.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_make_png.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -49,18 +49,12 @@ that use the parameter `bgcolor`.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5233): CRITICAL **: 01:27:59.628: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5233): CRITICAL **: 01:27:59.628: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5233): CRITICAL **: 01:27:59.628: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5238): CRITICAL **: 01:28:00.663: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5238): CRITICAL **: 01:28:00.663: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5238): CRITICAL **: 01:28:00.663: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -69,7 +63,7 @@ that use the parameter `bgcolor`.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import matplotlib.pyplot as plt
@@ -90,28 +84,22 @@ that use the parameter `bgcolor`.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  4.446 seconds)
+   **Total running time of the script:** (0 minutes 3.343 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_make_png.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_make_png.py <plot_make_png.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_make_png.ipynb <plot_make_png.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_make_png.ipynb <plot_make_png.ipynb>`
+      :download:`Download Python source code: plot_make_png.py <plot_make_png.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_make_svg.rst.txt b/_sources/auto_examples/quickflat/plot_make_svg.rst.txt
index 13689d23a..c9a902ef1 100644
--- a/_sources/auto_examples/quickflat/plot_make_svg.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_make_svg.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_make_svg.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_make_svg.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -49,18 +49,12 @@ that use the parameter `bgcolor`.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5223): CRITICAL **: 01:27:55.257: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5223): CRITICAL **: 01:27:55.257: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5223): CRITICAL **: 01:27:55.257: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5226): CRITICAL **: 01:27:56.295: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5226): CRITICAL **: 01:27:56.295: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5226): CRITICAL **: 01:27:56.295: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -69,7 +63,7 @@ that use the parameter `bgcolor`.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import matplotlib.pyplot as plt
@@ -90,28 +84,22 @@ that use the parameter `bgcolor`.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  4.189 seconds)
+   **Total running time of the script:** (0 minutes 3.335 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_make_svg.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_make_svg.py <plot_make_svg.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_make_svg.ipynb <plot_make_svg.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_make_svg.ipynb <plot_make_svg.ipynb>`
+      :download:`Download Python source code: plot_make_svg.py <plot_make_svg.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_rois.rst.txt b/_sources/auto_examples/quickflat/plot_rois.rst.txt
index e02da57df..67341e394 100644
--- a/_sources/auto_examples/quickflat/plot_rois.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_rois.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_rois.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_rois.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -62,18 +62,12 @@ By default, ROIs and ROI labels are displayed when a flatmap is plotted using
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5256): CRITICAL **: 01:28:06.354: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5256): CRITICAL **: 01:28:06.354: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5256): CRITICAL **: 01:28:06.354: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5260): CRITICAL **: 01:28:07.392: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5260): CRITICAL **: 01:28:07.392: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5260): CRITICAL **: 01:28:07.392: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -82,7 +76,7 @@ By default, ROIs and ROI labels are displayed when a flatmap is plotted using
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import numpy as np
@@ -108,28 +102,22 @@ By default, ROIs and ROI labels are displayed when a flatmap is plotted using
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  5.128 seconds)
+   **Total running time of the script:** (0 minutes 3.855 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_rois.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_rois.py <plot_rois.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_rois.ipynb <plot_rois.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_rois.ipynb <plot_rois.ipynb>`
+      :download:`Download Python source code: plot_rois.py <plot_rois.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_sulci.rst.txt b/_sources/auto_examples/quickflat/plot_sulci.rst.txt
index 5a5c9e16f..8ae029fe0 100644
--- a/_sources/auto_examples/quickflat/plot_sulci.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_sulci.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_sulci.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_sulci.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -40,21 +40,13 @@ displaying the sulci on the surface.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
     Generating curvature surface info...
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-    Failed to get connection
-    ** (inkscape:5209): CRITICAL **: 01:27:48.014: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5209): CRITICAL **: 01:27:48.014: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5209): CRITICAL **: 01:27:48.014: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5213): CRITICAL **: 01:27:48.884: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5213): CRITICAL **: 01:27:48.884: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5213): CRITICAL **: 01:27:48.884: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -63,7 +55,7 @@ displaying the sulci on the surface.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import numpy as np
@@ -81,28 +73,22 @@ displaying the sulci on the surface.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  9.313 seconds)
+   **Total running time of the script:** (0 minutes 7.101 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_sulci.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_sulci.py <plot_sulci.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_sulci.ipynb <plot_sulci.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_sulci.ipynb <plot_sulci.ipynb>`
+      :download:`Download Python source code: plot_sulci.py <plot_sulci.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_thickness_nanmean.rst.txt b/_sources/auto_examples/quickflat/plot_thickness_nanmean.rst.txt
index d9397aa25..a540f3931 100644
--- a/_sources/auto_examples/quickflat/plot_thickness_nanmean.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_thickness_nanmean.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_thickness_nanmean.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_thickness_nanmean.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -55,18 +55,12 @@ has the value NaN.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5358): CRITICAL **: 01:30:27.787: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5358): CRITICAL **: 01:30:27.787: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5358): CRITICAL **: 01:30:27.787: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5361): CRITICAL **: 01:30:28.963: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5361): CRITICAL **: 01:30:28.963: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5361): CRITICAL **: 01:30:28.963: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -75,7 +69,7 @@ has the value NaN.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -109,28 +103,22 @@ has the value NaN.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  4.428 seconds)
+   **Total running time of the script:** (0 minutes 3.378 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_thickness_nanmean.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_thickness_nanmean.py <plot_thickness_nanmean.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_thickness_nanmean.ipynb <plot_thickness_nanmean.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_thickness_nanmean.ipynb <plot_thickness_nanmean.ipynb>`
+      :download:`Download Python source code: plot_thickness_nanmean.py <plot_thickness_nanmean.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/plot_zoom_to_roi.rst.txt b/_sources/auto_examples/quickflat/plot_zoom_to_roi.rst.txt
index d4dbef349..03bc2e604 100644
--- a/_sources/auto_examples/quickflat/plot_zoom_to_roi.rst.txt
+++ b/_sources/auto_examples/quickflat/plot_zoom_to_roi.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickflat_plot_zoom_to_roi.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickflat_plot_zoom_to_roi.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -50,19 +50,13 @@ show just the region around that ROI.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5375): CRITICAL **: 01:30:32.250: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5375): CRITICAL **: 01:30:32.251: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5375): CRITICAL **: 01:30:32.251: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
     Generating a flatmap cache
-    Failed to get connection
-    ** (inkscape:5393): CRITICAL **: 01:31:05.967: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5393): CRITICAL **: 01:31:05.967: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5393): CRITICAL **: 01:31:05.967: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 3921 x 2048 pixels (192 dpi)
 
 
 
@@ -71,7 +65,7 @@ show just the region around that ROI.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     # sphinx_gallery_thumbnail_number = 2
 
@@ -111,28 +105,22 @@ show just the region around that ROI.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  39.235 seconds)
+   **Total running time of the script:** (0 minutes 36.630 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickflat_plot_zoom_to_roi.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_zoom_to_roi.py <plot_zoom_to_roi.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_zoom_to_roi.ipynb <plot_zoom_to_roi.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_zoom_to_roi.ipynb <plot_zoom_to_roi.ipynb>`
+      :download:`Download Python source code: plot_zoom_to_roi.py <plot_zoom_to_roi.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickflat/sg_execution_times.rst.txt b/_sources/auto_examples/quickflat/sg_execution_times.rst.txt
index 17743c8d8..77a5d623d 100644
--- a/_sources/auto_examples/quickflat/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/quickflat/sg_execution_times.rst.txt
@@ -3,32 +3,68 @@
 
 .. _sphx_glr_auto_examples_quickflat_sg_execution_times:
 
+
 Computation times
 =================
-**03:43.983** total execution time for **auto_examples_quickflat** files:
-
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_connected_vertices.py` (``plot_connected_vertices.py``)     | 02:03.094 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_zoom_to_roi.py` (``plot_zoom_to_roi.py``)                   | 00:39.235 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_make_gif.py` (``plot_make_gif.py``)                         | 00:12.570 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_make_figure.py` (``plot_make_figure.py``)                   | 00:11.182 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_sulci.py` (``plot_sulci.py``)                               | 00:09.313 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_advanced_compositing.py` (``plot_advanced_compositing.py``) | 00:05.141 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_rois.py` (``plot_rois.py``)                                 | 00:05.128 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_make_png.py` (``plot_make_png.py``)                         | 00:04.446 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_thickness_nanmean.py` (``plot_thickness_nanmean.py``)       | 00:04.428 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_make_svg.py` (``plot_make_svg.py``)                         | 00:04.189 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_dropout.py` (``plot_dropout.py``)                           | 00:03.200 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickflat_plot_cutouts.py` (``plot_cutouts.py``)                           | 00:02.057 | 0.0 MB |
-+---------------------------------------------------------------------------------------------------------+-----------+--------+
+**02:29.541** total execution time for 12 files **from auto_examples/quickflat**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_connected_vertices.py` (``plot_connected_vertices.py``)
+     - 01:06.515
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_zoom_to_roi.py` (``plot_zoom_to_roi.py``)
+     - 00:36.630
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_make_gif.py` (``plot_make_gif.py``)
+     - 00:09.046
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_make_figure.py` (``plot_make_figure.py``)
+     - 00:08.499
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_sulci.py` (``plot_sulci.py``)
+     - 00:07.101
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_rois.py` (``plot_rois.py``)
+     - 00:03.855
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_advanced_compositing.py` (``plot_advanced_compositing.py``)
+     - 00:03.674
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_thickness_nanmean.py` (``plot_thickness_nanmean.py``)
+     - 00:03.378
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_make_png.py` (``plot_make_png.py``)
+     - 00:03.343
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_make_svg.py` (``plot_make_svg.py``)
+     - 00:03.335
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_dropout.py` (``plot_dropout.py``)
+     - 00:02.353
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_cutouts.py` (``plot_cutouts.py``)
+     - 00:01.811
+     - 0.0
diff --git a/_sources/auto_examples/quickstart/index.rst.txt b/_sources/auto_examples/quickstart/index.rst.txt
new file mode 100644
index 000000000..79ae82302
--- /dev/null
+++ b/_sources/auto_examples/quickstart/index.rst.txt
@@ -0,0 +1,80 @@
+
+
+.. _sphx_glr_auto_examples_quickstart:
+
+Quickstart Examples
+------------------------------
+
+Examples demonstrating how to get started with pycortex.
+
+
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain in a web viewer. In ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickstart/images/thumb/sphx_glr_retinotopy_webgl_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickstart_retinotopy_webgl.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot Example Retinotopy in Web Viewer</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Easily locating your config file and filestore locations. This comes in useful when things don&#x27;...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickstart/images/thumb/sphx_glr_show_config_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickstart_show_config.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Finding out where the config and filestore are</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain on a flatmap. In ord...">
+
+.. only:: html
+
+  .. image:: /auto_examples/quickstart/images/thumb/sphx_glr_plot_retinotopy_flatmap_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_quickstart_plot_retinotopy_flatmap.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot Example Retinotopy Flatmaps</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
+
+
+.. toctree::
+   :hidden:
+
+   /auto_examples/quickstart/retinotopy_webgl
+   /auto_examples/quickstart/show_config
+   /auto_examples/quickstart/plot_retinotopy_flatmap
+
diff --git a/_sources/auto_examples/quickstart/plot_retinotopy_flatmap.rst.txt b/_sources/auto_examples/quickstart/plot_retinotopy_flatmap.rst.txt
index 564192d45..c536dddb8 100644
--- a/_sources/auto_examples/quickstart/plot_retinotopy_flatmap.rst.txt
+++ b/_sources/auto_examples/quickstart/plot_retinotopy_flatmap.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickstart_plot_retinotopy_flatmap.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickstart_plot_retinotopy_flatmap.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -28,13 +28,13 @@ dataset_, but that can also be done automatically through the `urllib`
 command that is included.
 
 
-.. _dataset: http://gallantlab.org/pycortex/S1_retinotopy.hdf
+.. _dataset: https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf
 
 S1 is the example subject that comes with pycortex, but if you want to plot
 data onto a different subject, you will need to have them in your filestore,
 and you will also need a flatmap for them.
 
-.. GENERATED FROM PYTHON SOURCE LINES 18-46
+.. GENERATED FROM PYTHON SOURCE LINES 18-44
 
 
 
@@ -58,19 +58,13 @@ and you will also need a flatmap for them.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
     Mask not found, generating...
-    Failed to get connection
-    ** (inkscape:5434): CRITICAL **: 01:31:30.199: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5434): CRITICAL **: 01:31:30.199: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5434): CRITICAL **: 01:31:30.200: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5438): CRITICAL **: 01:31:31.326: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5438): CRITICAL **: 01:31:31.326: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5438): CRITICAL **: 01:31:31.326: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -79,20 +73,18 @@ and you will also need a flatmap for them.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
-    import six
     import cortex
     import matplotlib.pyplot as plt
-    if six.PY2:
-        from urllib import urlretrieve
-    elif six.PY3:
-        from urllib.request import urlretrieve
+    from urllib.request import urlretrieve
 
 
     # Download the dataset and load it
-    _ = urlretrieve("http://gallantlab.org/pycortex/S1_retinotopy.hdf",
-                    "S1_retinotopy.hdf")
+    _ = urlretrieve(
+        "https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf", 
+        "S1_retinotopy.hdf"
+    )
     ret_data = cortex.load("S1_retinotopy.hdf")
 
     # The retinotopy data has to be divided into left and right hemispheres
@@ -113,28 +105,22 @@ and you will also need a flatmap for them.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  6.018 seconds)
+   **Total running time of the script:** (0 minutes 5.836 seconds)
 
 
 .. _sphx_glr_download_auto_examples_quickstart_plot_retinotopy_flatmap.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_retinotopy_flatmap.py <plot_retinotopy_flatmap.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_retinotopy_flatmap.ipynb <plot_retinotopy_flatmap.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_retinotopy_flatmap.ipynb <plot_retinotopy_flatmap.ipynb>`
+      :download:`Download Python source code: plot_retinotopy_flatmap.py <plot_retinotopy_flatmap.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickstart/retinotopy_webgl.rst.txt b/_sources/auto_examples/quickstart/retinotopy_webgl.rst.txt
index 489f6e55d..0e166adff 100644
--- a/_sources/auto_examples/quickstart/retinotopy_webgl.rst.txt
+++ b/_sources/auto_examples/quickstart/retinotopy_webgl.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickstart_retinotopy_webgl.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickstart_retinotopy_webgl.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -27,7 +27,7 @@ in a web viewer. In order for this demo to work, you need to download this
 dataset_, but that can also be done automatically through the `urllib`
 command that is included.
 
-.. _dataset: http://gallantlab.org/pycortex/S1_retinotopy.hdf
+.. _dataset: https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf
 
 S1 is the example subject that comes with pycortex, but if you want to plot
 data onto a different subject, you will need to have them in your filestore.
@@ -37,51 +37,39 @@ yourself you will get a viewer showing something like the following.
 
 .. image:: ../../webgl/angle_left.png
 
-.. GENERATED FROM PYTHON SOURCE LINES 22-37
+.. GENERATED FROM PYTHON SOURCE LINES 22-36
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
-    try: #  python 2
-        from urllib import urlretrieve
-    except ImportError:  # python 3
-        from urllib.request import urlretrieve
+    from urllib.request import urlretrieve
 
 
     # Download and load in retinotopy data
-    _ = urlretrieve("http://gallantlab.org/pycortex/S1_retinotopy.hdf",
-                    "S1_retinotopy.hdf")
+    _ = urlretrieve(
+        "https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf", 
+        "S1_retinotopy.hdf"
+    )
     ret_data = cortex.load("S1_retinotopy.hdf")
 
     # Open the webviewer
     cortex.webshow(ret_data)
 
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_quickstart_retinotopy_webgl.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: retinotopy_webgl.py <retinotopy_webgl.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: retinotopy_webgl.ipynb <retinotopy_webgl.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: retinotopy_webgl.ipynb <retinotopy_webgl.ipynb>`
+      :download:`Download Python source code: retinotopy_webgl.py <retinotopy_webgl.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/quickstart/sg_execution_times.rst.txt b/_sources/auto_examples/quickstart/sg_execution_times.rst.txt
index cf25927b0..fd890a1d3 100644
--- a/_sources/auto_examples/quickstart/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/quickstart/sg_execution_times.rst.txt
@@ -3,14 +3,41 @@
 
 .. _sphx_glr_auto_examples_quickstart_sg_execution_times:
 
+
 Computation times
 =================
-**00:06.018** total execution time for **auto_examples_quickstart** files:
-
-+------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickstart_plot_retinotopy_flatmap.py` (``plot_retinotopy_flatmap.py``) | 00:06.018 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickstart_retinotopy_webgl.py` (``retinotopy_webgl.py``)               | 00:00.000 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_quickstart_show_config.py` (``show_config.py``)                         | 00:00.000 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------+-----------+--------+
+**00:05.836** total execution time for 3 files **from auto_examples/quickstart**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_quickstart_plot_retinotopy_flatmap.py` (``plot_retinotopy_flatmap.py``)
+     - 00:05.836
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickstart_retinotopy_webgl.py` (``retinotopy_webgl.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickstart_show_config.py` (``show_config.py``)
+     - 00:00.000
+     - 0.0
diff --git a/_sources/auto_examples/quickstart/show_config.rst.txt b/_sources/auto_examples/quickstart/show_config.rst.txt
index b0a344c54..4404abc6c 100644
--- a/_sources/auto_examples/quickstart/show_config.rst.txt
+++ b/_sources/auto_examples/quickstart/show_config.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_quickstart_show_config.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_quickstart_show_config.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -27,7 +27,7 @@ This comes in useful when things don't work because the config file is not set c
 
 .. GENERATED FROM PYTHON SOURCE LINES 9-13
 
-.. code-block:: default
+.. code-block:: Python
 
     from __future__ import print_function
     import cortex
@@ -40,7 +40,7 @@ Finding where your config file is.
 
 .. GENERATED FROM PYTHON SOURCE LINES 15-17
 
-.. code-block:: default
+.. code-block:: Python
 
     print(cortex.options.usercfg)
 
@@ -52,7 +52,7 @@ Useful for when your subjects don't show up in cortex.db, and all you have is S1
 
 .. GENERATED FROM PYTHON SOURCE LINES 20-22
 
-.. code-block:: default
+.. code-block:: Python
 
     print(config.get('basic', 'filestore'))
 
@@ -64,7 +64,7 @@ Useful for when you get color map not found messages.
 
 .. GENERATED FROM PYTHON SOURCE LINES 25-27
 
-.. code-block:: default
+.. code-block:: Python
 
     print(config.get('webgl', 'colormaps'))
 
@@ -76,7 +76,7 @@ However, you *can* still look at options from within pycortex.
 
 .. GENERATED FROM PYTHON SOURCE LINES 30-37
 
-.. code-block:: default
+.. code-block:: Python
 
 
     # sections gets the upper-level sections in the config file
@@ -87,30 +87,19 @@ However, you *can* still look at options from within pycortex.
     basic_config = config.items('paths_default')
     print(basic_config)
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_quickstart_show_config.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: show_config.py <show_config.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: show_config.ipynb <show_config.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: show_config.ipynb <show_config.ipynb>`
+      :download:`Download Python source code: show_config.py <show_config.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/sg_execution_times.rst.txt b/_sources/auto_examples/sg_execution_times.rst.txt
new file mode 100644
index 000000000..ccb2da185
--- /dev/null
+++ b/_sources/auto_examples/sg_execution_times.rst.txt
@@ -0,0 +1,37 @@
+
+:orphan:
+
+.. _sphx_glr_auto_examples_sg_execution_times:
+
+
+Computation times
+=================
+**00:00.000** total execution time for 0 files **from auto_examples**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - N/A
+     - N/A
+     - N/A
diff --git a/_sources/auto_examples/surface_analyses/index.rst.txt b/_sources/auto_examples/surface_analyses/index.rst.txt
new file mode 100644
index 000000000..f21308989
--- /dev/null
+++ b/_sources/auto_examples/surface_analyses/index.rst.txt
@@ -0,0 +1,134 @@
+
+
+.. _sphx_glr_auto_examples_surface_analyses:
+
+Surface Analysis Examples
+------------------------------
+
+Examples demonstrating operations and analyses done on brain surfaces.
+
+
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si...">
+
+.. only:: html
+
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_tissots_indicatrix_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_tissots_indicatrix.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Tissot's Indicatrix</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This will plot a geodesic path between two vertices on the cortical surface. This path is based...">
+
+.. only:: html
+
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_geodesic_path_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_path.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plotting Geodesic Paths</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="This plots the distances (in mm) between a vertex or set of vertices and all other vertices on ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_geodesic_distance_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_distance.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plotting Geodesic Distances</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si...">
+
+.. only:: html
+
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_flatmap_distortion_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_flatmap_distortion.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Flatmap Distortion</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Subsurfaces can be used for efficient operations on subsets of cortical surface">
+
+.. only:: html
+
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_subsurfaces_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_subsurfaces.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Plot and Use Subsurface Tools</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to interpolate data from a sparse collection of points to all the p...">
+
+.. only:: html
+
+  .. image:: /auto_examples/surface_analyses/images/thumb/sphx_glr_plot_interpolate_data_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_surface_analyses_plot_interpolate_data.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Interpolate Data</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
+
+
+.. toctree::
+   :hidden:
+
+   /auto_examples/surface_analyses/plot_tissots_indicatrix
+   /auto_examples/surface_analyses/plot_geodesic_path
+   /auto_examples/surface_analyses/plot_geodesic_distance
+   /auto_examples/surface_analyses/plot_flatmap_distortion
+   /auto_examples/surface_analyses/plot_subsurfaces
+   /auto_examples/surface_analyses/plot_interpolate_data
+
diff --git a/_sources/auto_examples/surface_analyses/plot_flatmap_distortion.rst.txt b/_sources/auto_examples/surface_analyses/plot_flatmap_distortion.rst.txt
index aa7e8ada9..d3a926d9d 100644
--- a/_sources/auto_examples/surface_analyses/plot_flatmap_distortion.rst.txt
+++ b/_sources/auto_examples/surface_analyses/plot_flatmap_distortion.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_surface_analyses_plot_flatmap_distortion.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_surface_analyses_plot_flatmap_distortion.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -62,21 +62,15 @@ the original.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    /home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in true_divide
+    /home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in divide
       vertratios /= np.bincount(self.polys.ravel(), minlength=len(self.ref))
     Generating distortion surface info...
-    /home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in true_divide
+    /home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in divide
       vertratios /= np.bincount(self.polys.ravel(), minlength=len(self.ref))
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-    /home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in true_divide
+    /home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in divide
       vertratios /= np.bincount(self.polys.ravel(), minlength=len(self.ref))
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
     Generating distortion surface info...
 
 
@@ -86,7 +80,7 @@ the original.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -136,28 +130,22 @@ the original.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  30.161 seconds)
+   **Total running time of the script:** (0 minutes 23.561 seconds)
 
 
 .. _sphx_glr_download_auto_examples_surface_analyses_plot_flatmap_distortion.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_flatmap_distortion.py <plot_flatmap_distortion.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_flatmap_distortion.ipynb <plot_flatmap_distortion.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_flatmap_distortion.ipynb <plot_flatmap_distortion.ipynb>`
+      :download:`Download Python source code: plot_flatmap_distortion.py <plot_flatmap_distortion.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/surface_analyses/plot_geodesic_distance.rst.txt b/_sources/auto_examples/surface_analyses/plot_geodesic_distance.rst.txt
index acf90a75b..9253135ea 100644
--- a/_sources/auto_examples/surface_analyses/plot_geodesic_distance.rst.txt
+++ b/_sources/auto_examples/surface_analyses/plot_geodesic_distance.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_surface_analyses_plot_geodesic_distance.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_surface_analyses_plot_geodesic_distance.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -58,20 +58,12 @@ The two hemispheres must be run separately.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-    Failed to get connection
-    ** (inkscape:5473): CRITICAL **: 01:32:28.085: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5473): CRITICAL **: 01:32:28.085: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5473): CRITICAL **: 01:32:28.085: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5477): CRITICAL **: 01:32:29.814: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5477): CRITICAL **: 01:32:29.814: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5477): CRITICAL **: 01:32:29.814: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -80,7 +72,7 @@ The two hemispheres must be run separately.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import cortex.polyutils
@@ -124,28 +116,22 @@ The two hemispheres must be run separately.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  14.953 seconds)
+   **Total running time of the script:** (0 minutes 14.610 seconds)
 
 
 .. _sphx_glr_download_auto_examples_surface_analyses_plot_geodesic_distance.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_geodesic_distance.py <plot_geodesic_distance.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_geodesic_distance.ipynb <plot_geodesic_distance.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_geodesic_distance.ipynb <plot_geodesic_distance.ipynb>`
+      :download:`Download Python source code: plot_geodesic_distance.py <plot_geodesic_distance.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/surface_analyses/plot_geodesic_path.rst.txt b/_sources/auto_examples/surface_analyses/plot_geodesic_path.rst.txt
index 27bae8682..4068736ff 100644
--- a/_sources/auto_examples/surface_analyses/plot_geodesic_path.rst.txt
+++ b/_sources/auto_examples/surface_analyses/plot_geodesic_path.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_surface_analyses_plot_geodesic_path.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_surface_analyses_plot_geodesic_path.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -32,7 +32,7 @@ All you need to do is supply a surface object and two vertices on that surface
 and you can find the geodesic path. This script additionally makes a plot to
 show all of the vertices listed in the path.
 
-.. GENERATED FROM PYTHON SOURCE LINES 16-45
+.. GENERATED FROM PYTHON SOURCE LINES 16-47
 
 
 
@@ -44,16 +44,10 @@ show all of the vertices listed in the path.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-    Failed to get connection
-    ** (inkscape:5462): CRITICAL **: 01:32:15.597: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5462): CRITICAL **: 01:32:15.597: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5462): CRITICAL **: 01:32:15.597: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -62,7 +56,7 @@ show all of the vertices listed in the path.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
     import cortex.polyutils
@@ -75,6 +69,8 @@ show all of the vertices listed in the path.
     surfs = [cortex.polyutils.Surface(*d)
              for d in cortex.db.get_surf(subject, "fiducial")]
     numl = surfs[0].pts.shape[0]
+    numr = surfs[1].pts.shape[0]
+    num_vertices = numl + numr
 
     # Now we need to pick the start and end points of the line we will draw
     pt_a = 100
@@ -84,41 +80,35 @@ show all of the vertices listed in the path.
     path = surfs[0].geodesic_path(pt_a, pt_b)
 
     # In order to plot this on the cortical surface, we need an array that is the
-    # same size as the number of vertices in the left hemisphere
-    path_data = np.zeros(numl)
+    # same size as the number of vertices
+    path_data = np.zeros(num_vertices) * np.nan
     for v in path:
         path_data[v] = 1
 
     # And now plot these distances onto the cortical surface
-    path_verts = cortex.Vertex(path_data, subject, cmap="Blues_r")
-    cortex.quickshow(path_verts, with_colorbar=False)
+    path_verts = cortex.Vertex(path_data, subject, cmap="Reds", vmin=0, vmax=1)
+    cortex.quickshow(path_verts, with_colorbar=False, with_curvature=True)
     plt.show()
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  8.814 seconds)
+   **Total running time of the script:** (0 minutes 7.153 seconds)
 
 
 .. _sphx_glr_download_auto_examples_surface_analyses_plot_geodesic_path.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_geodesic_path.py <plot_geodesic_path.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_geodesic_path.ipynb <plot_geodesic_path.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_geodesic_path.ipynb <plot_geodesic_path.ipynb>`
+      :download:`Download Python source code: plot_geodesic_path.py <plot_geodesic_path.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/surface_analyses/plot_interpolate_data.rst.txt b/_sources/auto_examples/surface_analyses/plot_interpolate_data.rst.txt
index 2c5c9e34e..33ca617eb 100644
--- a/_sources/auto_examples/surface_analyses/plot_interpolate_data.rst.txt
+++ b/_sources/auto_examples/surface_analyses/plot_interpolate_data.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_surface_analyses_plot_interpolate_data.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_surface_analyses_plot_interpolate_data.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -39,23 +39,10 @@ the selected points. This is similar to thin plate splines.
    :class: sphx-glr-single-img
 
 
-.. rst-class:: sphx-glr-script-out
 
- Out:
 
- .. code-block:: none
 
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-
-
-
-
-
-
-|
-
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -109,28 +96,22 @@ the selected points. This is similar to thin plate splines.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  15.640 seconds)
+   **Total running time of the script:** (0 minutes 11.818 seconds)
 
 
 .. _sphx_glr_download_auto_examples_surface_analyses_plot_interpolate_data.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_interpolate_data.py <plot_interpolate_data.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_interpolate_data.ipynb <plot_interpolate_data.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_interpolate_data.ipynb <plot_interpolate_data.ipynb>`
+      :download:`Download Python source code: plot_interpolate_data.py <plot_interpolate_data.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/surface_analyses/plot_subsurfaces.rst.txt b/_sources/auto_examples/surface_analyses/plot_subsurfaces.rst.txt
index 829f54623..e1dd83dbc 100644
--- a/_sources/auto_examples/surface_analyses/plot_subsurfaces.rst.txt
+++ b/_sources/auto_examples/surface_analyses/plot_subsurfaces.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_surface_analyses_plot_subsurfaces.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_surface_analyses_plot_subsurfaces.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -26,7 +26,7 @@ Subsurfaces can be used for efficient operations on subsets of cortical surface
 
 .. GENERATED FROM PYTHON SOURCE LINES 9-24
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import tempfile
@@ -56,7 +56,7 @@ create subsurface
 
 .. GENERATED FROM PYTHON SOURCE LINES 26-33
 
-.. code-block:: default
+.. code-block:: Python
 
 
     center = 125000
@@ -69,15 +69,6 @@ create subsurface
 
 
 
-.. rst-class:: sphx-glr-script-out
-
- Out:
-
- .. code-block:: none
-
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-
 
 
 
@@ -87,7 +78,7 @@ plot data on subsurface
 
 .. GENERATED FROM PYTHON SOURCE LINES 35-42
 
-.. code-block:: default
+.. code-block:: Python
 
 
     data = subsurface.geodesic_distance([0]) + 20
@@ -107,16 +98,10 @@ plot data on subsurface
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-    Failed to get connection
-    ** (inkscape:5499): CRITICAL **: 01:33:03.252: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5499): CRITICAL **: 01:33:03.252: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5499): CRITICAL **: 01:33:03.252: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -128,7 +113,7 @@ plot subsurface as gif
 
 .. GENERATED FROM PYTHON SOURCE LINES 45-51
 
-.. code-block:: default
+.. code-block:: Python
 
 
     f, path = tempfile.mkstemp()
@@ -154,7 +139,7 @@ create many patches
 
 .. GENERATED FROM PYTHON SOURCE LINES 58-76
 
-.. code-block:: default
+.. code-block:: Python
 
 
 
@@ -185,16 +170,10 @@ create many patches
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-    Failed to get connection
-    ** (inkscape:5506): CRITICAL **: 01:33:09.549: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5506): CRITICAL **: 01:33:09.549: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5506): CRITICAL **: 01:33:09.549: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -205,7 +184,7 @@ create geodesic strip patch
 
 .. GENERATED FROM PYTHON SOURCE LINES 78-95
 
-.. code-block:: default
+.. code-block:: Python
 
 
     patch = left_surface.get_geodesic_strip_patch(v0=70000, v1=125000, radius=5)
@@ -254,24 +233,14 @@ create geodesic strip patch
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
-    Failed to get connection
-    ** (inkscape:5514): CRITICAL **: 01:33:20.494: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5514): CRITICAL **: 01:33:20.494: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5514): CRITICAL **: 01:33:20.494: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5517): CRITICAL **: 01:33:21.485: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5517): CRITICAL **: 01:33:21.485: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5517): CRITICAL **: 01:33:21.486: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
-    Failed to get connection
-    ** (inkscape:5520): CRITICAL **: 01:33:22.471: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5520): CRITICAL **: 01:33:22.471: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5520): CRITICAL **: 01:33:22.471: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -279,28 +248,22 @@ create geodesic strip patch
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  22.744 seconds)
+   **Total running time of the script:** (0 minutes 19.551 seconds)
 
 
 .. _sphx_glr_download_auto_examples_surface_analyses_plot_subsurfaces.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_subsurfaces.py <plot_subsurfaces.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_subsurfaces.ipynb <plot_subsurfaces.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_subsurfaces.ipynb <plot_subsurfaces.ipynb>`
+      :download:`Download Python source code: plot_subsurfaces.py <plot_subsurfaces.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/surface_analyses/plot_tissots_indicatrix.rst.txt b/_sources/auto_examples/surface_analyses/plot_tissots_indicatrix.rst.txt
index 3449963e6..61b1bd38b 100644
--- a/_sources/auto_examples/surface_analyses/plot_tissots_indicatrix.rst.txt
+++ b/_sources/auto_examples/surface_analyses/plot_tissots_indicatrix.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_surface_analyses_plot_tissots_indicatrix.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_surface_analyses_plot_tissots_indicatrix.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -53,13 +53,9 @@ introduced by flattening the globe onto a map:
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
     Generating tissots_indicatrix surface info...
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-      warn('splu requires CSC matrix format', SparseEfficiencyWarning)
     Adding vertex 88060..
     Adding vertex 93467..
     Adding vertex 51981..
@@ -209,8 +205,6 @@ introduced by flattening the globe onto a map:
     Adding vertex 6044..
     Adding vertex 67298..
     Adding vertex 40064..
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/numpy/lib/npyio.py:713: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
-      val = np.asanyarray(val)
 
 
 
@@ -219,7 +213,7 @@ introduced by flattening the globe onto a map:
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -234,28 +228,22 @@ introduced by flattening the globe onto a map:
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  33.731 seconds)
+   **Total running time of the script:** (0 minutes 25.962 seconds)
 
 
 .. _sphx_glr_download_auto_examples_surface_analyses_plot_tissots_indicatrix.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_tissots_indicatrix.py <plot_tissots_indicatrix.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_tissots_indicatrix.ipynb <plot_tissots_indicatrix.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_tissots_indicatrix.ipynb <plot_tissots_indicatrix.ipynb>`
+      :download:`Download Python source code: plot_tissots_indicatrix.py <plot_tissots_indicatrix.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/surface_analyses/sg_execution_times.rst.txt b/_sources/auto_examples/surface_analyses/sg_execution_times.rst.txt
index 38cdd114a..361c3cafd 100644
--- a/_sources/auto_examples/surface_analyses/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/surface_analyses/sg_execution_times.rst.txt
@@ -3,20 +3,50 @@
 
 .. _sphx_glr_auto_examples_surface_analyses_sg_execution_times:
 
+
 Computation times
 =================
-**02:06.044** total execution time for **auto_examples_surface_analyses** files:
-
-+------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_surface_analyses_plot_tissots_indicatrix.py` (``plot_tissots_indicatrix.py``) | 00:33.731 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_surface_analyses_plot_flatmap_distortion.py` (``plot_flatmap_distortion.py``) | 00:30.161 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_surface_analyses_plot_subsurfaces.py` (``plot_subsurfaces.py``)               | 00:22.744 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_surface_analyses_plot_interpolate_data.py` (``plot_interpolate_data.py``)     | 00:15.640 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_distance.py` (``plot_geodesic_distance.py``)   | 00:14.953 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_path.py` (``plot_geodesic_path.py``)           | 00:08.814 | 0.0 MB |
-+------------------------------------------------------------------------------------------------------------+-----------+--------+
+**01:42.654** total execution time for 6 files **from auto_examples/surface_analyses**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_tissots_indicatrix.py` (``plot_tissots_indicatrix.py``)
+     - 00:25.962
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_flatmap_distortion.py` (``plot_flatmap_distortion.py``)
+     - 00:23.561
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_subsurfaces.py` (``plot_subsurfaces.py``)
+     - 00:19.551
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_distance.py` (``plot_geodesic_distance.py``)
+     - 00:14.610
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_interpolate_data.py` (``plot_interpolate_data.py``)
+     - 00:11.818
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_path.py` (``plot_geodesic_path.py``)
+     - 00:07.153
+     - 0.0
diff --git a/_sources/auto_examples/utils/index.rst.txt b/_sources/auto_examples/utils/index.rst.txt
new file mode 100644
index 000000000..63c77703e
--- /dev/null
+++ b/_sources/auto_examples/utils/index.rst.txt
@@ -0,0 +1,170 @@
+
+
+.. _sphx_glr_auto_examples_utils:
+
+Utility Examples
+------------------------------
+
+Examples demonstrating how to do all sorts of beautiful things using pycortex. 
+
+
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to get the vertices that are inside an ROI that was defined in the ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_get_roi_vertices_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_utils_plot_get_roi_vertices.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Get Vertices for an ROI</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="The utility function get_vox_dist returns the distance from each voxel in some space to the nea...">
+
+.. only:: html
+
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_voxel_distance_from_surface_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_utils_plot_voxel_distance_from_surface.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Voxel distance from surface</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="The function mosaic plots all of the slices in a volume in a matplotlib figure. Good for quick ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_mosaic_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_utils_plot_mosaic.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Mosaic plot</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s...">
+
+.. only:: html
+
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_subject_to_mni_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_utils_subject_to_mni.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Transform from Subject to MNI Space</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Get proportion of each voxel that exists within a named ROI (this  constitutes a probability ma...">
+
+.. only:: html
+
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_roi_voxel_mask_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_mask.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Get ROI Voxel Mask</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s...">
+
+.. only:: html
+
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_mni_to_subject_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_utils_mni_to_subject.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Transform from MNI to Subject Space</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="The function cortex.export.plot_panels plots a number of 3d views of a given volume, in the sam...">
+
+.. only:: html
+
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_multi_panels_plots_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_utils_multi_panels_plots.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Multi-panels figures</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Create an index volume (similar to the aseg masks in freesurfer) with a different  integer inde...">
+
+.. only:: html
+
+  .. image:: /auto_examples/utils/images/thumb/sphx_glr_plot_roi_voxel_index_volume_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_index_volume.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Get ROI Index Volume</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
+
+
+.. toctree::
+   :hidden:
+
+   /auto_examples/utils/plot_get_roi_vertices
+   /auto_examples/utils/plot_voxel_distance_from_surface
+   /auto_examples/utils/plot_mosaic
+   /auto_examples/utils/subject_to_mni
+   /auto_examples/utils/plot_roi_voxel_mask
+   /auto_examples/utils/mni_to_subject
+   /auto_examples/utils/multi_panels_plots
+   /auto_examples/utils/plot_roi_voxel_index_volume
+
diff --git a/_sources/auto_examples/utils/mni_to_subject.rst.txt b/_sources/auto_examples/utils/mni_to_subject.rst.txt
index d6fef910a..d245dc3dd 100644
--- a/_sources/auto_examples/utils/mni_to_subject.rst.txt
+++ b/_sources/auto_examples/utils/mni_to_subject.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_utils_mni_to_subject.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_utils_mni_to_subject.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -31,7 +31,7 @@ into subject space from MNI space.
 
 .. GENERATED FROM PYTHON SOURCE LINES 14-45
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
 
@@ -59,37 +59,26 @@ into subject space from MNI space.
                                                 data.data, s1_to_mni)
     # subject_data is a nibabel Nifti1Image
 
-    subject_data_vol = mni_data.get_data() # the actual array, shape=(100,100,31)
+    subject_data_vol = mni_data.get_fdata() # the actual array, shape=(100,100,31)
 
     # That was the manual method. pycortex can also cache these transforms for you
     # if you get them using the pycortex database
     s1_to_mni_db = cortex.db.get_mnixfm('S1', 'fullhead')
     # this is the same as s1_to_mni, but will return instantly on subsequent calls
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_utils_mni_to_subject.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: mni_to_subject.py <mni_to_subject.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: mni_to_subject.ipynb <mni_to_subject.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: mni_to_subject.ipynb <mni_to_subject.ipynb>`
+      :download:`Download Python source code: mni_to_subject.py <mni_to_subject.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/utils/multi_panels_plots.rst.txt b/_sources/auto_examples/utils/multi_panels_plots.rst.txt
index 755ebf345..48b79219a 100644
--- a/_sources/auto_examples/utils/multi_panels_plots.rst.txt
+++ b/_sources/auto_examples/utils/multi_panels_plots.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_utils_multi_panels_plots.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_utils_multi_panels_plots.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -30,7 +30,7 @@ The function needs to be run on a system with a display, since it will launch
 a webgl viewer. The best way to get the expected results is to keep the webgl
 viewer visible during the process.
 
-The selection of views and the aggregation is controled by a list of "panels".
+The selection of views and the aggregation is controlled by a list of "panels".
 Examples of panels can be imported with:
 
     from cortex.export import params_flatmap_lateral_medial
@@ -38,7 +38,7 @@ Examples of panels can be imported with:
 
 .. GENERATED FROM PYTHON SOURCE LINES 21-31
 
-.. code-block:: default
+.. code-block:: Python
 
     import os
     import tempfile
@@ -57,7 +57,7 @@ create some artificial data
 
 .. GENERATED FROM PYTHON SOURCE LINES 33-38
 
-.. code-block:: default
+.. code-block:: Python
 
 
     shape = cortex.db.get_xfm(subject, 'identity').shape
@@ -71,7 +71,7 @@ Show examples of multi-panels figures
 
 .. GENERATED FROM PYTHON SOURCE LINES 40-49
 
-.. code-block:: default
+.. code-block:: Python
 
 
     params = cortex.export.params_flatmap_lateral_medial
@@ -89,7 +89,7 @@ List all predefined angles
 
 .. GENERATED FROM PYTHON SOURCE LINES 51-65
 
-.. code-block:: default
+.. code-block:: Python
 
 
     base_name = os.path.join(tempfile.mkdtemp(), 'fig')
@@ -112,7 +112,7 @@ List all predefined surfaces
 
 .. GENERATED FROM PYTHON SOURCE LINES 67-81
 
-.. code-block:: default
+.. code-block:: Python
 
 
     base_name = os.path.join(tempfile.mkdtemp(), 'fig')
@@ -130,30 +130,19 @@ List all predefined surfaces
         plt.show()
 
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_utils_multi_panels_plots.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: multi_panels_plots.py <multi_panels_plots.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: multi_panels_plots.ipynb <multi_panels_plots.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: multi_panels_plots.ipynb <multi_panels_plots.ipynb>`
+      :download:`Download Python source code: multi_panels_plots.py <multi_panels_plots.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/utils/plot_get_roi_vertices.rst.txt b/_sources/auto_examples/utils/plot_get_roi_vertices.rst.txt
index 01bc61459..642505a8c 100644
--- a/_sources/auto_examples/utils/plot_get_roi_vertices.rst.txt
+++ b/_sources/auto_examples/utils/plot_get_roi_vertices.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_utils_plot_get_roi_vertices.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_utils_plot_get_roi_vertices.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -37,14 +37,10 @@ defined in the SVG ROI file (see :doc:`/rois.rst`).
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    Failed to get connection
-    ** (inkscape:5534): CRITICAL **: 01:33:42.301: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5534): CRITICAL **: 01:33:42.301: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5534): CRITICAL **: 01:33:42.301: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
     <Figure size 1960x1024 with 2 Axes>
 
@@ -54,7 +50,7 @@ defined in the SVG ROI file (see :doc:`/rois.rst`).
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
     import cortex
 
@@ -75,28 +71,22 @@ defined in the SVG ROI file (see :doc:`/rois.rst`).
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  2.277 seconds)
+   **Total running time of the script:** (0 minutes 4.012 seconds)
 
 
 .. _sphx_glr_download_auto_examples_utils_plot_get_roi_vertices.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_get_roi_vertices.py <plot_get_roi_vertices.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_get_roi_vertices.ipynb <plot_get_roi_vertices.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_get_roi_vertices.ipynb <plot_get_roi_vertices.ipynb>`
+      :download:`Download Python source code: plot_get_roi_vertices.py <plot_get_roi_vertices.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/utils/plot_mosaic.rst.txt b/_sources/auto_examples/utils/plot_mosaic.rst.txt
index ecab1d109..c371bbd14 100644
--- a/_sources/auto_examples/utils/plot_mosaic.rst.txt
+++ b/_sources/auto_examples/utils/plot_mosaic.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_utils_plot_mosaic.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_utils_plot_mosaic.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -53,26 +53,10 @@ The function `mosaic` plots all of the slices in a volume in a matplotlib figure
          :class: sphx-glr-multi-img
 
 
-.. rst-class:: sphx-glr-script-out
 
- Out:
 
- .. code-block:: none
 
-    /home/runner/work/pycortex/pycortex/examples/utils/plot_mosaic.py:17: DeprecationWarning: get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).
-
-    * deprecated from version: 3.0
-    * Will raise <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0
-      volume_arr = cortex.db.get_xfm('S1', 'fullhead').reference.get_data().T
-
-
-
-
-
-
-|
-
-.. code-block:: default
+.. code-block:: Python
 
     # sphinx_gallery_thumbnail_number = 3
 
@@ -80,7 +64,7 @@ The function `mosaic` plots all of the slices in a volume in a matplotlib figure
     import matplotlib.pyplot as plt
 
     # load reference functional image for test purposes
-    volume_arr = cortex.db.get_xfm('S1', 'fullhead').reference.get_data().T
+    volume_arr = cortex.db.get_xfm('S1', 'fullhead').reference.get_fdata().T
     # volume_arr is a (31,100,100) ndarray
 
 
@@ -104,28 +88,22 @@ The function `mosaic` plots all of the slices in a volume in a matplotlib figure
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.272 seconds)
+   **Total running time of the script:** (0 minutes 0.202 seconds)
 
 
 .. _sphx_glr_download_auto_examples_utils_plot_mosaic.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_mosaic.py <plot_mosaic.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_mosaic.ipynb <plot_mosaic.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_mosaic.ipynb <plot_mosaic.ipynb>`
+      :download:`Download Python source code: plot_mosaic.py <plot_mosaic.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/utils/plot_roi_voxel_index_volume.rst.txt b/_sources/auto_examples/utils/plot_roi_voxel_index_volume.rst.txt
index dcac0aa38..cdd890bd9 100644
--- a/_sources/auto_examples/utils/plot_roi_voxel_index_volume.rst.txt
+++ b/_sources/auto_examples/utils/plot_roi_voxel_index_volume.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_utils_plot_roi_voxel_index_volume.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_utils_plot_roi_voxel_index_volume.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -38,64 +38,62 @@ ROIs in the right hemisphere will have positive values.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
-    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (V3A) contains no splines
+    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (V3A) contains no splines
       warnings.warn("Requested layer in svg file (%s) contains no splines"%self.name)
-    /home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in V3A!
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in V3A!
       warnings.warn("No vertices found in {}!".format(name))
-    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (V3B) contains no splines
+    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (V3B) contains no splines
       warnings.warn("Requested layer in svg file (%s) contains no splines"%self.name)
-    /home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in V3B!
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in V3B!
       warnings.warn("No vertices found in {}!".format(name))
-    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (LO) contains no splines
+    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (LO) contains no splines
       warnings.warn("Requested layer in svg file (%s) contains no splines"%self.name)
-    /home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in LO!
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in LO!
       warnings.warn("No vertices found in {}!".format(name))
-    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (V4) contains no splines
+    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (V4) contains no splines
       warnings.warn("Requested layer in svg file (%s) contains no splines"%self.name)
-    /home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in V4!
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in V4!
       warnings.warn("No vertices found in {}!".format(name))
-    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (V7) contains no splines
+    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (V7) contains no splines
       warnings.warn("Requested layer in svg file (%s) contains no splines"%self.name)
-    /home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in V7!
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in V7!
       warnings.warn("No vertices found in {}!".format(name))
-    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (IFSFP) contains no splines
+    /home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (IFSFP) contains no splines
       warnings.warn("Requested layer in svg file (%s) contains no splines"%self.name)
-    /home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in IFSFP!
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in IFSFP!
       warnings.warn("No vertices found in {}!".format(name))
     Found 100.00% of S1H
     Found 100.00% of S1M
     Found 100.00% of sPMv
     Found 100.00% of PMvh
-    Found 100.00% of M1F
+    Found 97.46% of M1F
     Found 100.00% of M1H
     Found 100.00% of Broca
     Found 100.00% of SMFA
     Found 100.00% of M1M
-    /home/runner/work/pycortex/pycortex/cortex/utils.py:621: RuntimeWarning: Mean of empty slice.
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:665: RuntimeWarning: Mean of empty slice.
       pct_coverage[roi] = vert_in_scan.mean() * 100
-    /opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/numpy/core/_methods.py:189: RuntimeWarning: invalid value encountered in double_scalars
+    /opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in scalar divide
       ret = ret.dtype.type(ret / rcount)
     Found nan% of V3A
     Found nan% of V3B
     Found 100.00% of FO
     Found 100.00% of PPA
     Found 100.00% of S2F
-    Found 100.00% of SEF
+    Found 91.46% of SEF
     Found nan% of LO
-    Found 100.00% of V1
+    Found 98.03% of V1
     Found 100.00% of V2
     Found 100.00% of V3
     Found nan% of V4
     Found nan% of V7
     Found 100.00% of FEF
-    Found 100.00% of AC
+    Found 99.92% of AC
     Found 100.00% of OFA
     Found nan% of IFSFP
-    Found 100.00% of S1F
+    Found 97.23% of S1F
     Found 100.00% of OPA
     Found 100.00% of EBA
     Found 100.00% of RSC
@@ -103,10 +101,18 @@ ROIs in the right hemisphere will have positive values.
     Found 100.00% of SMHA
     Found 100.00% of FFA
     Cutting 0 overlapping voxels (should be < ~50)
-    Failed to get connection
-    ** (inkscape:5552): CRITICAL **: 01:34:04.502: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5552): CRITICAL **: 01:34:04.502: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5552): CRITICAL **: 01:34:04.502: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI S1F is only 97.23% contained in your scan protocol!
+      warnings.warn('ROI %s is only %0.2f%% contained in your scan protocol!'%(roi, pct_coverage[roi]))
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI M1F is only 97.46% contained in your scan protocol!
+      warnings.warn('ROI %s is only %0.2f%% contained in your scan protocol!'%(roi, pct_coverage[roi]))
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI V1 is only 98.03% contained in your scan protocol!
+      warnings.warn('ROI %s is only %0.2f%% contained in your scan protocol!'%(roi, pct_coverage[roi]))
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI SEF is only 91.46% contained in your scan protocol!
+      warnings.warn('ROI %s is only %0.2f%% contained in your scan protocol!'%(roi, pct_coverage[roi]))
+    /home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI AC is only 99.92% contained in your scan protocol!
+      warnings.warn('ROI %s is only %0.2f%% contained in your scan protocol!'%(roi, pct_coverage[roi]))
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
     Index keys for which ROI is which in `index_volume`:
     {'S1H': 1, 'S1M': 2, 'sPMv': 3, 'PMvh': 4, 'M1F': 5, 'M1H': 6, 'Broca': 7, 'SMFA': 8, 'M1M': 9, 'V3A': 10, 'V3B': 11, 'FO': 12, 'PPA': 13, 'S2F': 14, 'SEF': 15, 'LO': 16, 'V1': 17, 'V2': 18, 'V3': 19, 'V4': 20, 'V7': 21, 'FEF': 22, 'AC': 23, 'OFA': 24, 'IFSFP': 25, 'S1F': 26, 'OPA': 27, 'EBA': 28, 'RSC': 29, 'IPS': 30, 'SMHA': 31, 'FFA': 32}
 
@@ -117,7 +123,7 @@ ROIs in the right hemisphere will have positive values.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -157,28 +163,22 @@ ROIs in the right hemisphere will have positive values.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  9.884 seconds)
+   **Total running time of the script:** (0 minutes 22.996 seconds)
 
 
 .. _sphx_glr_download_auto_examples_utils_plot_roi_voxel_index_volume.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_roi_voxel_index_volume.py <plot_roi_voxel_index_volume.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_roi_voxel_index_volume.ipynb <plot_roi_voxel_index_volume.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_roi_voxel_index_volume.ipynb <plot_roi_voxel_index_volume.ipynb>`
+      :download:`Download Python source code: plot_roi_voxel_index_volume.py <plot_roi_voxel_index_volume.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/utils/plot_roi_voxel_mask.rst.txt b/_sources/auto_examples/utils/plot_roi_voxel_mask.rst.txt
index 38ec1dc7b..a9e5e4134 100644
--- a/_sources/auto_examples/utils/plot_roi_voxel_mask.rst.txt
+++ b/_sources/auto_examples/utils/plot_roi_voxel_mask.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_utils_plot_roi_voxel_mask.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_utils_plot_roi_voxel_mask.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -24,7 +24,7 @@ Get ROI Voxel Mask
 
 Get proportion of each voxel that exists within a named ROI (this 
 constitutes a probability map for the ROI, with values ranging from
-0-1). Plot this probablistic roi mask onto a flatmap. 
+0-1). Plot this probabilistic roi mask onto a flatmap. 
 
 In order for this to work, the specified ROI must exist in the
 overlays.svg file in the pycortex filestore for this subject.
@@ -41,18 +41,14 @@ overlays.svg file in the pycortex filestore for this subject.
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
     Caching mapper...
     Found 100.00% of EBA
     Cutting 0 overlapping voxels (should be < ~50)
     Generating a flatmap cache
-    Failed to get connection
-    ** (inkscape:5543): CRITICAL **: 01:33:54.463: dbus_g_proxy_new_for_name: assertion 'connection != NULL' failed
-    ** (inkscape:5543): CRITICAL **: 01:33:54.463: dbus_g_proxy_call: assertion 'DBUS_IS_G_PROXY (proxy)' failed
-    ** (inkscape:5543): CRITICAL **: 01:33:54.464: dbus_g_connection_register_g_object: assertion 'connection != NULL' failed
+    Background RRGGBBAA: ffffff00
+    Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 
 
@@ -61,7 +57,7 @@ overlays.svg file in the pycortex filestore for this subject.
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -76,7 +72,7 @@ overlays.svg file in the pycortex filestore for this subject.
                                            roi_list=[roi],
                                            gm_sampler='cortical-conservative', # Select only voxels mostly within cortex
                                            split_lr=False, # No separate left/right ROIs
-                                           threshold=None, # Leave roi mask values as probabilites / fractions
+                                           threshold=None, # Leave roi mask values as probabilities / fractions
                                            return_dict=True
                                            )
 
@@ -98,28 +94,22 @@ overlays.svg file in the pycortex filestore for this subject.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  7.399 seconds)
+   **Total running time of the script:** (0 minutes 8.659 seconds)
 
 
 .. _sphx_glr_download_auto_examples_utils_plot_roi_voxel_mask.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_roi_voxel_mask.py <plot_roi_voxel_mask.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_roi_voxel_mask.ipynb <plot_roi_voxel_mask.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_roi_voxel_mask.ipynb <plot_roi_voxel_mask.ipynb>`
+      :download:`Download Python source code: plot_roi_voxel_mask.py <plot_roi_voxel_mask.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/utils/plot_voxel_distance_from_surface.rst.txt b/_sources/auto_examples/utils/plot_voxel_distance_from_surface.rst.txt
index 265a631b1..8f2a7260c 100644
--- a/_sources/auto_examples/utils/plot_voxel_distance_from_surface.rst.txt
+++ b/_sources/auto_examples/utils/plot_voxel_distance_from_surface.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_utils_plot_voxel_distance_from_surface.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_utils_plot_voxel_distance_from_surface.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -36,12 +36,10 @@ The utility function `get_vox_dist` returns the distance from each voxel in some
 
 .. rst-class:: sphx-glr-script-out
 
- Out:
-
  .. code-block:: none
 
 
-    <matplotlib.colorbar.Colorbar object at 0x7fa8b2139a60>
+    <matplotlib.colorbar.Colorbar object at 0x7f4873079b50>
 
 
 
@@ -49,7 +47,7 @@ The utility function `get_vox_dist` returns the distance from each voxel in some
 
 |
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -73,28 +71,22 @@ The utility function `get_vox_dist` returns the distance from each voxel in some
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  4.326 seconds)
+   **Total running time of the script:** (0 minutes 3.643 seconds)
 
 
 .. _sphx_glr_download_auto_examples_utils_plot_voxel_distance_from_surface.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: plot_voxel_distance_from_surface.py <plot_voxel_distance_from_surface.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: plot_voxel_distance_from_surface.ipynb <plot_voxel_distance_from_surface.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: plot_voxel_distance_from_surface.ipynb <plot_voxel_distance_from_surface.ipynb>`
+      :download:`Download Python source code: plot_voxel_distance_from_surface.py <plot_voxel_distance_from_surface.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/utils/sg_execution_times.rst.txt b/_sources/auto_examples/utils/sg_execution_times.rst.txt
index 720ada408..56eafd03e 100644
--- a/_sources/auto_examples/utils/sg_execution_times.rst.txt
+++ b/_sources/auto_examples/utils/sg_execution_times.rst.txt
@@ -3,24 +3,56 @@
 
 .. _sphx_glr_auto_examples_utils_sg_execution_times:
 
+
 Computation times
 =================
-**00:24.158** total execution time for **auto_examples_utils** files:
-
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_index_volume.py` (``plot_roi_voxel_index_volume.py``)           | 00:09.884 | 0.0 MB |
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_mask.py` (``plot_roi_voxel_mask.py``)                           | 00:07.399 | 0.0 MB |
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_utils_plot_voxel_distance_from_surface.py` (``plot_voxel_distance_from_surface.py``) | 00:04.326 | 0.0 MB |
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_utils_plot_get_roi_vertices.py` (``plot_get_roi_vertices.py``)                       | 00:02.277 | 0.0 MB |
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_utils_plot_mosaic.py` (``plot_mosaic.py``)                                           | 00:00.272 | 0.0 MB |
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_utils_mni_to_subject.py` (``mni_to_subject.py``)                                     | 00:00.000 | 0.0 MB |
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_utils_multi_panels_plots.py` (``multi_panels_plots.py``)                             | 00:00.000 | 0.0 MB |
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_utils_subject_to_mni.py` (``subject_to_mni.py``)                                     | 00:00.000 | 0.0 MB |
-+-------------------------------------------------------------------------------------------------------------------+-----------+--------+
+**00:39.512** total execution time for 8 files **from auto_examples/utils**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_index_volume.py` (``plot_roi_voxel_index_volume.py``)
+     - 00:22.996
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_mask.py` (``plot_roi_voxel_mask.py``)
+     - 00:08.659
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_get_roi_vertices.py` (``plot_get_roi_vertices.py``)
+     - 00:04.012
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_voxel_distance_from_surface.py` (``plot_voxel_distance_from_surface.py``)
+     - 00:03.643
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_mosaic.py` (``plot_mosaic.py``)
+     - 00:00.202
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_mni_to_subject.py` (``mni_to_subject.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_multi_panels_plots.py` (``multi_panels_plots.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_subject_to_mni.py` (``subject_to_mni.py``)
+     - 00:00.000
+     - 0.0
diff --git a/_sources/auto_examples/utils/subject_to_mni.rst.txt b/_sources/auto_examples/utils/subject_to_mni.rst.txt
index f88618703..9dcf174be 100644
--- a/_sources/auto_examples/utils/subject_to_mni.rst.txt
+++ b/_sources/auto_examples/utils/subject_to_mni.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_utils_subject_to_mni.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_utils_subject_to_mni.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -30,7 +30,7 @@ to MNI space, and how to apply that transform to a dataset.
 
 .. GENERATED FROM PYTHON SOURCE LINES 13-40
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -54,37 +54,26 @@ to MNI space, and how to apply that transform to a dataset.
     mni_data = mni.transform_to_mni(data, s1_to_mni)
     # mni_data is a nibabel Nifti1Image
 
-    mni_data_vol = mni_data.get_data() # the actual array, shape=(182,218,182)
+    mni_data_vol = mni_data.get_fdata() # the actual array, shape=(182,218,182)
 
     # That was the manual method. pycortex can also cache these transforms for you
     # if you get them using the pycortex database
     s1_to_mni_db = cortex.db.get_mnixfm('S1', 'fullhead')
     # this is the same as s1_to_mni, but will return instantly on subsequent calls
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_utils_subject_to_mni.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: subject_to_mni.py <subject_to_mni.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: subject_to_mni.ipynb <subject_to_mni.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: subject_to_mni.ipynb <subject_to_mni.ipynb>`
+      :download:`Download Python source code: subject_to_mni.py <subject_to_mni.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/webgl/dynamic_with_custom_template.rst.txt b/_sources/auto_examples/webgl/dynamic_with_custom_template.rst.txt
index 20452d07d..33034e533 100644
--- a/_sources/auto_examples/webgl/dynamic_with_custom_template.rst.txt
+++ b/_sources/auto_examples/webgl/dynamic_with_custom_template.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_webgl_dynamic_with_custom_template.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_webgl_dynamic_with_custom_template.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -63,7 +63,7 @@ the following css code:
 
 .. GENERATED FROM PYTHON SOURCE LINES 47-61
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -81,30 +81,19 @@ the following css code:
     # the viewer can then be accessed in a web browser, in this case at "localhost:39140"
     # the viewer will display the modifications specified in the template
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_webgl_dynamic_with_custom_template.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: dynamic_with_custom_template.py <dynamic_with_custom_template.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: dynamic_with_custom_template.ipynb <dynamic_with_custom_template.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: dynamic_with_custom_template.ipynb <dynamic_with_custom_template.ipynb>`
+      :download:`Download Python source code: dynamic_with_custom_template.py <dynamic_with_custom_template.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/webgl/index.rst.txt b/_sources/auto_examples/webgl/index.rst.txt
new file mode 100644
index 000000000..b40550767
--- /dev/null
+++ b/_sources/auto_examples/webgl/index.rst.txt
@@ -0,0 +1,116 @@
+
+
+.. _sphx_glr_auto_examples_webgl:
+
+WebGL Examples
+------------------------------
+
+Examples demonstrating how to make beautiful interactive 3-D viewers
+
+
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbnails">
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser">
+
+.. only:: html
+
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_single_dataset_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_webgl_single_dataset.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Create a 3D WebGL Viewer</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="A static viewer is a brain viewer that exists permanently on a filesystem">
+
+.. only:: html
+
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_static_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_webgl_static.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Create a static viewer</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_dynamic_with_custom_template_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_webgl_dynamic_with_custom_template.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Dynamic viewer with html template</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ...">
+
+.. only:: html
+
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_static_with_custom_template_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_webgl_static_with_custom_template.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Static viewer with html template</div>
+    </div>
+
+
+.. raw:: html
+
+    <div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser">
+
+.. only:: html
+
+  .. image:: /auto_examples/webgl/images/thumb/sphx_glr_multiple_datasets_thumb.png
+    :alt:
+
+  :ref:`sphx_glr_auto_examples_webgl_multiple_datasets.py`
+
+.. raw:: html
+
+      <div class="sphx-glr-thumbnail-title">Create a 3D WebGL Viewer with Multiple Datasets</div>
+    </div>
+
+
+.. raw:: html
+
+    </div>
+
+
+.. toctree::
+   :hidden:
+
+   /auto_examples/webgl/single_dataset
+   /auto_examples/webgl/static
+   /auto_examples/webgl/dynamic_with_custom_template
+   /auto_examples/webgl/static_with_custom_template
+   /auto_examples/webgl/multiple_datasets
+
diff --git a/_sources/auto_examples/webgl/multiple_datasets.rst.txt b/_sources/auto_examples/webgl/multiple_datasets.rst.txt
index a5fae358b..d7d21afe9 100644
--- a/_sources/auto_examples/webgl/multiple_datasets.rst.txt
+++ b/_sources/auto_examples/webgl/multiple_datasets.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_webgl_multiple_datasets.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_webgl_multiple_datasets.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -34,7 +34,7 @@ In the browser you can switch between datasets with the + and - keys
 
 .. GENERATED FROM PYTHON SOURCE LINES 17-38
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -59,30 +59,19 @@ In the browser you can switch between datasets with the + and - keys
     # the viewer can then be accessed in a web browser, in this case at "localhost:39140"
 
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_webgl_multiple_datasets.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: multiple_datasets.py <multiple_datasets.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: multiple_datasets.ipynb <multiple_datasets.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: multiple_datasets.ipynb <multiple_datasets.ipynb>`
+      :download:`Download Python source code: multiple_datasets.py <multiple_datasets.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/webgl/sg_execution_times.rst.txt b/_sources/auto_examples/webgl/sg_execution_times.rst.txt
new file mode 100644
index 000000000..00957eaf8
--- /dev/null
+++ b/_sources/auto_examples/webgl/sg_execution_times.rst.txt
@@ -0,0 +1,49 @@
+
+:orphan:
+
+.. _sphx_glr_auto_examples_webgl_sg_execution_times:
+
+
+Computation times
+=================
+**00:00.000** total execution time for 5 files **from auto_examples/webgl**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_webgl_dynamic_with_custom_template.py` (``dynamic_with_custom_template.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_multiple_datasets.py` (``multiple_datasets.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_single_dataset.py` (``single_dataset.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_static.py` (``static.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_static_with_custom_template.py` (``static_with_custom_template.py``)
+     - 00:00.000
+     - 0.0
diff --git a/_sources/auto_examples/webgl/single_dataset.rst.txt b/_sources/auto_examples/webgl/single_dataset.rst.txt
index 8615b2268..42429151d 100644
--- a/_sources/auto_examples/webgl/single_dataset.rst.txt
+++ b/_sources/auto_examples/webgl/single_dataset.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_webgl_single_dataset.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_webgl_single_dataset.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -26,7 +26,7 @@ A webgl viewer displays a 3D view of brain data in a web browser
 
 .. GENERATED FROM PYTHON SOURCE LINES 9-23
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -44,30 +44,19 @@ A webgl viewer displays a 3D view of brain data in a web browser
     # the viewer can then be accessed in a web browser, in this case at "localhost:39140"
 
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_webgl_single_dataset.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: single_dataset.py <single_dataset.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: single_dataset.ipynb <single_dataset.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: single_dataset.ipynb <single_dataset.ipynb>`
+      :download:`Download Python source code: single_dataset.py <single_dataset.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/webgl/static.rst.txt b/_sources/auto_examples/webgl/static.rst.txt
index 779a91790..0af66cf00 100644
--- a/_sources/auto_examples/webgl/static.rst.txt
+++ b/_sources/auto_examples/webgl/static.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_webgl_static.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_webgl_static.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -30,7 +30,7 @@ The viewer directory must be hosted by a server such as nginx
 
 .. GENERATED FROM PYTHON SOURCE LINES 12-28
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -50,30 +50,19 @@ The viewer directory must be hosted by a server such as nginx
     # a webserver such as nginx can then be used to host the static viewer
 
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_webgl_static.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: static.py <static.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: static.ipynb <static.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: static.ipynb <static.ipynb>`
+      :download:`Download Python source code: static.py <static.py>`
 
 
 .. only:: html
diff --git a/_sources/auto_examples/webgl/static_with_custom_template.rst.txt b/_sources/auto_examples/webgl/static_with_custom_template.rst.txt
index f229eab82..7384db5f5 100644
--- a/_sources/auto_examples/webgl/static_with_custom_template.rst.txt
+++ b/_sources/auto_examples/webgl/static_with_custom_template.rst.txt
@@ -10,7 +10,7 @@
     .. note::
         :class: sphx-glr-download-link-note
 
-        Click :ref:`here <sphx_glr_download_auto_examples_webgl_static_with_custom_template.py>`
+        :ref:`Go to the end <sphx_glr_download_auto_examples_webgl_static_with_custom_template.py>`
         to download the full example code
 
 .. rst-class:: sphx-glr-example-title
@@ -65,7 +65,7 @@ the following css code:
 
 .. GENERATED FROM PYTHON SOURCE LINES 49-66
 
-.. code-block:: default
+.. code-block:: Python
 
 
     import cortex
@@ -86,30 +86,19 @@ the following css code:
     # a webserver such as nginx can then be used to host the static viewer
     # with the new template
 
-.. rst-class:: sphx-glr-timing
-
-   **Total running time of the script:** ( 0 minutes  0.000 seconds)
-
-
 .. _sphx_glr_download_auto_examples_webgl_static_with_custom_template.py:
 
+.. only:: html
 
-.. only :: html
-
- .. container:: sphx-glr-footer
-    :class: sphx-glr-footer-example
-
-
-
-  .. container:: sphx-glr-download sphx-glr-download-python
-
-     :download:`Download Python source code: static_with_custom_template.py <static_with_custom_template.py>`
+  .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: sphx-glr-download sphx-glr-download-jupyter
 
+      :download:`Download Jupyter notebook: static_with_custom_template.ipynb <static_with_custom_template.ipynb>`
 
-  .. container:: sphx-glr-download sphx-glr-download-jupyter
+    .. container:: sphx-glr-download sphx-glr-download-python
 
-     :download:`Download Jupyter notebook: static_with_custom_template.ipynb <static_with_custom_template.ipynb>`
+      :download:`Download Python source code: static_with_custom_template.py <static_with_custom_template.py>`
 
 
 .. only:: html
diff --git a/_sources/database.rst.txt b/_sources/database.rst.txt
index e2b728df8..44be7a592 100644
--- a/_sources/database.rst.txt
+++ b/_sources/database.rst.txt
@@ -43,7 +43,7 @@ In order to plot cortical data for a subject, at least the fiducial and flat geo
 
 Accessing surfaces
 ~~~~~~~~~~~~~~~~~~
-Two methods exist for accessing the surface data once they are committed to the database: direct command access, or via a convienient tab completion interface.
+Two methods exist for accessing the surface data once they are committed to the database: direct command access, or via a convenient tab completion interface.
 
 Command access
 ~~~~~~~~~~~~~~
@@ -109,7 +109,7 @@ Transformations in pycortex are stored as **affine** matrices encoded in magnet
 
 Each transform is stored in its own subdirectory containing two files: ``matrices.xfm``, and ``reference.nii.gz``. Masks are also stored in the transforms directory.
 
-Transforms are saved as JSON-encoded text files. They have the format ``{subject}_{transform}.xfm``. There are four fields in this JSON structure: ``subject``, ``epifile``, ``coord``, ``magnet``. ``epifile`` gives the filename of the functional volume (EPI) that served as the reference for this transform. ``coord`` stores the transform from fiducial to coordinate space (for fast index lookups). ``magnet`` stores the transform from the fiducial to the magnet space, as defined in the return of ``nibabel.get_affine()``.
+Transforms are saved as JSON-encoded text files. They have the format ``{subject}_{transform}.xfm``. There are four fields in this JSON structure: ``subject``, ``epifile``, ``coord``, ``magnet``. ``epifile`` gives the filename of the functional volume (EPI) that served as the reference for this transform. ``coord`` stores the transform from fiducial to coordinate space (for fast index lookups). ``magnet`` stores the transform from the fiducial to the magnet space, as defined in the return of ``nibabel.affine``.
 
 Reference volumes are typically in Nifti_ format (*.nii), but can be any format that nibabel_ understands. These are stored to ensure that we know what the reference for any transform was. This makes it possible to visually verify and tweak alignments as well as keep a static store of images for future coregistrations.
 
diff --git a/_sources/generated/Vertex/cortex.dataset.Vertex.get_cmapdict.rst.txt b/_sources/generated/Vertex/cortex.dataset.Vertex.get_cmapdict.rst.txt
new file mode 100644
index 000000000..409ff3aaf
--- /dev/null
+++ b/_sources/generated/Vertex/cortex.dataset.Vertex.get_cmapdict.rst.txt
@@ -0,0 +1,6 @@
+cortex.dataset.Vertex.get\_cmapdict
+===================================
+
+.. currentmodule:: cortex.dataset
+
+.. automethod:: Vertex.get_cmapdict
\ No newline at end of file
diff --git a/_sources/generated/Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.rst.txt b/_sources/generated/Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.rst.txt
new file mode 100644
index 000000000..8283b134f
--- /dev/null
+++ b/_sources/generated/Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.rst.txt
@@ -0,0 +1,6 @@
+cortex.dataset.Vertex2D.get\_cmapdict
+=====================================
+
+.. currentmodule:: cortex.dataset
+
+.. automethod:: Vertex2D.get_cmapdict
\ No newline at end of file
diff --git a/_sources/generated/VertexRGB/cortex.dataset.VertexRGB.alpha.rst.txt b/_sources/generated/VertexRGB/cortex.dataset.VertexRGB.alpha.rst.txt
new file mode 100644
index 000000000..6adccaa38
--- /dev/null
+++ b/_sources/generated/VertexRGB/cortex.dataset.VertexRGB.alpha.rst.txt
@@ -0,0 +1,6 @@
+cortex.dataset.VertexRGB.alpha
+==============================
+
+.. currentmodule:: cortex.dataset
+
+.. autoproperty:: VertexRGB.alpha
\ No newline at end of file
diff --git a/_sources/generated/VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.rst.txt b/_sources/generated/VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.rst.txt
new file mode 100644
index 000000000..df0c8366b
--- /dev/null
+++ b/_sources/generated/VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.rst.txt
@@ -0,0 +1,6 @@
+cortex.dataset.VertexRGB.get\_cmapdict
+======================================
+
+.. currentmodule:: cortex.dataset
+
+.. automethod:: VertexRGB.get_cmapdict
\ No newline at end of file
diff --git a/_sources/generated/Volume/cortex.dataset.Volume.get_cmapdict.rst.txt b/_sources/generated/Volume/cortex.dataset.Volume.get_cmapdict.rst.txt
new file mode 100644
index 000000000..dbff2ab65
--- /dev/null
+++ b/_sources/generated/Volume/cortex.dataset.Volume.get_cmapdict.rst.txt
@@ -0,0 +1,6 @@
+cortex.dataset.Volume.get\_cmapdict
+===================================
+
+.. currentmodule:: cortex.dataset
+
+.. automethod:: Volume.get_cmapdict
\ No newline at end of file
diff --git a/_sources/generated/Volume2D/cortex.dataset.Volume2D.get_cmapdict.rst.txt b/_sources/generated/Volume2D/cortex.dataset.Volume2D.get_cmapdict.rst.txt
new file mode 100644
index 000000000..4486c2566
--- /dev/null
+++ b/_sources/generated/Volume2D/cortex.dataset.Volume2D.get_cmapdict.rst.txt
@@ -0,0 +1,6 @@
+cortex.dataset.Volume2D.get\_cmapdict
+=====================================
+
+.. currentmodule:: cortex.dataset
+
+.. automethod:: Volume2D.get_cmapdict
\ No newline at end of file
diff --git a/_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.alpha.rst.txt b/_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.alpha.rst.txt
new file mode 100644
index 000000000..35d65ab86
--- /dev/null
+++ b/_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.alpha.rst.txt
@@ -0,0 +1,6 @@
+cortex.dataset.VolumeRGB.alpha
+==============================
+
+.. currentmodule:: cortex.dataset
+
+.. autoproperty:: VolumeRGB.alpha
\ No newline at end of file
diff --git a/_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.rst.txt b/_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.rst.txt
new file mode 100644
index 000000000..961e620da
--- /dev/null
+++ b/_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.rst.txt
@@ -0,0 +1,6 @@
+cortex.dataset.VolumeRGB.get\_cmapdict
+======================================
+
+.. currentmodule:: cortex.dataset
+
+.. automethod:: VolumeRGB.get_cmapdict
\ No newline at end of file
diff --git a/_sources/generated/cortex.dataset.Vertex.rst.txt b/_sources/generated/cortex.dataset.Vertex.rst.txt
index 75f46aafe..8930f63f9 100644
--- a/_sources/generated/cortex.dataset.Vertex.rst.txt
+++ b/_sources/generated/cortex.dataset.Vertex.rst.txt
@@ -19,6 +19,7 @@
      ~Vertex.empty
      ~Vertex.exp
      ~Vertex.from_hdf
+     ~Vertex.get_cmapdict
      ~Vertex.map
      ~Vertex.random
      ~Vertex.to_json
diff --git a/_sources/generated/cortex.dataset.Vertex2D.rst.txt b/_sources/generated/cortex.dataset.Vertex2D.rst.txt
index aa5c808c3..3e91cb76d 100644
--- a/_sources/generated/cortex.dataset.Vertex2D.rst.txt
+++ b/_sources/generated/cortex.dataset.Vertex2D.rst.txt
@@ -17,6 +17,7 @@
      ~Vertex2D.blend_curvature
      ~Vertex2D.copy
      ~Vertex2D.from_hdf
+     ~Vertex2D.get_cmapdict
      ~Vertex2D.to_json
      ~Vertex2D.uniques
    
diff --git a/_sources/generated/cortex.dataset.VertexRGB.rst.txt b/_sources/generated/cortex.dataset.VertexRGB.rst.txt
index 9aada55e9..4de14527d 100644
--- a/_sources/generated/cortex.dataset.VertexRGB.rst.txt
+++ b/_sources/generated/cortex.dataset.VertexRGB.rst.txt
@@ -17,6 +17,7 @@
      ~VertexRGB.blend_curvature
      ~VertexRGB.copy
      ~VertexRGB.from_hdf
+     ~VertexRGB.get_cmapdict
      ~VertexRGB.to_json
      ~VertexRGB.uniques
    
@@ -29,6 +30,7 @@
    .. autosummary::
       :toctree: VertexRGB
    
+      ~VertexRGB.alpha
       ~VertexRGB.left
       ~VertexRGB.name
       ~VertexRGB.priority
diff --git a/_sources/generated/cortex.dataset.Volume.rst.txt b/_sources/generated/cortex.dataset.Volume.rst.txt
index 6c74bb5c1..0247d388c 100644
--- a/_sources/generated/cortex.dataset.Volume.rst.txt
+++ b/_sources/generated/cortex.dataset.Volume.rst.txt
@@ -18,6 +18,7 @@
      ~Volume.empty
      ~Volume.exp
      ~Volume.from_hdf
+     ~Volume.get_cmapdict
      ~Volume.map
      ~Volume.random
      ~Volume.save
diff --git a/_sources/generated/cortex.dataset.Volume2D.rst.txt b/_sources/generated/cortex.dataset.Volume2D.rst.txt
index 277a7e1f2..39f21f96d 100644
--- a/_sources/generated/cortex.dataset.Volume2D.rst.txt
+++ b/_sources/generated/cortex.dataset.Volume2D.rst.txt
@@ -16,6 +16,7 @@
      ~Volume2D.__init__
      ~Volume2D.copy
      ~Volume2D.from_hdf
+     ~Volume2D.get_cmapdict
      ~Volume2D.to_json
      ~Volume2D.uniques
    
diff --git a/_sources/generated/cortex.dataset.VolumeRGB.rst.txt b/_sources/generated/cortex.dataset.VolumeRGB.rst.txt
index 362e2f277..e07916088 100644
--- a/_sources/generated/cortex.dataset.VolumeRGB.rst.txt
+++ b/_sources/generated/cortex.dataset.VolumeRGB.rst.txt
@@ -17,6 +17,7 @@
      ~VolumeRGB.color_voxels
      ~VolumeRGB.copy
      ~VolumeRGB.from_hdf
+     ~VolumeRGB.get_cmapdict
      ~VolumeRGB.to_json
      ~VolumeRGB.uniques
    
@@ -29,6 +30,7 @@
    .. autosummary::
       :toctree: VolumeRGB
    
+      ~VolumeRGB.alpha
       ~VolumeRGB.name
       ~VolumeRGB.priority
       ~VolumeRGB.raw
diff --git a/_sources/install.rst.txt b/_sources/install.rst.txt
index 4d21ba2ac..e208b65da 100644
--- a/_sources/install.rst.txt
+++ b/_sources/install.rst.txt
@@ -14,7 +14,7 @@ If you wish to install the development version of pycortex, you can install it d
 To do so, replace the second install line above with the following::
 
     # Install development version of pycortex from github
-    pip install -U git+git://github.com/gallantlab/pycortex.git
+    pip install -U git+https://github.com/gallantlab/pycortex.git
 
 Optional Dependencies
 ---------------------
diff --git a/_sources/sg_execution_times.rst.txt b/_sources/sg_execution_times.rst.txt
new file mode 100644
index 000000000..568276a08
--- /dev/null
+++ b/_sources/sg_execution_times.rst.txt
@@ -0,0 +1,166 @@
+
+:orphan:
+
+.. _sphx_glr_sg_execution_times:
+
+
+Computation times
+=================
+**05:44.549** total execution time for 44 files **from all galleries**:
+
+.. container::
+
+  .. raw:: html
+
+    <style scoped>
+    <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+    <link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+    </style>
+    <script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+    <script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+    <script type="text/javascript" class="init">
+    $(document).ready( function () {
+        $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+    } );
+    </script>
+
+  .. list-table::
+   :header-rows: 1
+   :class: table table-striped sg-datatable
+
+   * - Example
+     - Time
+     - Mem (MB)
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_connected_vertices.py` (``../examples/quickflat/plot_connected_vertices.py``)
+     - 01:06.515
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_zoom_to_roi.py` (``../examples/quickflat/plot_zoom_to_roi.py``)
+     - 00:36.630
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_tissots_indicatrix.py` (``../examples/surface_analyses/plot_tissots_indicatrix.py``)
+     - 00:25.962
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_flatmap_distortion.py` (``../examples/surface_analyses/plot_flatmap_distortion.py``)
+     - 00:23.561
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_index_volume.py` (``../examples/utils/plot_roi_voxel_index_volume.py``)
+     - 00:22.996
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_subsurfaces.py` (``../examples/surface_analyses/plot_subsurfaces.py``)
+     - 00:19.551
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_dataset_arithmetic.py` (``../examples/datasets/plot_dataset_arithmetic.py``)
+     - 00:14.861
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_distance.py` (``../examples/surface_analyses/plot_geodesic_distance.py``)
+     - 00:14.610
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_interpolate_data.py` (``../examples/surface_analyses/plot_interpolate_data.py``)
+     - 00:11.818
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_volumeRGB.py` (``../examples/datasets/plot_volumeRGB.py``)
+     - 00:11.075
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_make_gif.py` (``../examples/quickflat/plot_make_gif.py``)
+     - 00:09.046
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_roi_voxel_mask.py` (``../examples/utils/plot_roi_voxel_mask.py``)
+     - 00:08.659
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_make_figure.py` (``../examples/quickflat/plot_make_figure.py``)
+     - 00:08.499
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_surface_analyses_plot_geodesic_path.py` (``../examples/surface_analyses/plot_geodesic_path.py``)
+     - 00:07.153
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_sulci.py` (``../examples/quickflat/plot_sulci.py``)
+     - 00:07.101
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickstart_plot_retinotopy_flatmap.py` (``../examples/quickstart/plot_retinotopy_flatmap.py``)
+     - 00:05.836
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_volume_to_vertex.py` (``../examples/datasets/plot_volume_to_vertex.py``)
+     - 00:05.438
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_volume.py` (``../examples/datasets/plot_volume.py``)
+     - 00:04.868
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_volume2D.py` (``../examples/datasets/plot_volume2D.py``)
+     - 00:04.602
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_get_roi_vertices.py` (``../examples/utils/plot_get_roi_vertices.py``)
+     - 00:04.012
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_rois.py` (``../examples/quickflat/plot_rois.py``)
+     - 00:03.855
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_advanced_compositing.py` (``../examples/quickflat/plot_advanced_compositing.py``)
+     - 00:03.674
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_voxel_distance_from_surface.py` (``../examples/utils/plot_voxel_distance_from_surface.py``)
+     - 00:03.643
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_thickness_nanmean.py` (``../examples/quickflat/plot_thickness_nanmean.py``)
+     - 00:03.378
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_make_png.py` (``../examples/quickflat/plot_make_png.py``)
+     - 00:03.343
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_make_svg.py` (``../examples/quickflat/plot_make_svg.py``)
+     - 00:03.335
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_vertex.py` (``../examples/datasets/plot_vertex.py``)
+     - 00:03.304
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_dropout.py` (``../examples/quickflat/plot_dropout.py``)
+     - 00:02.353
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickflat_plot_cutouts.py` (``../examples/quickflat/plot_cutouts.py``)
+     - 00:01.811
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_vertex2D.py` (``../examples/datasets/plot_vertex2D.py``)
+     - 00:01.433
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_datasets_plot_vertexRGB.py` (``../examples/datasets/plot_vertexRGB.py``)
+     - 00:01.425
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_plot_mosaic.py` (``../examples/utils/plot_mosaic.py``)
+     - 00:00.202
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_fsaverage_upsample_to_fsaverage.py` (``../examples/fsaverage/upsample_to_fsaverage.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_import_surface_import_fmriprep.py` (``../examples/import_surface/import_fmriprep.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickstart_retinotopy_webgl.py` (``../examples/quickstart/retinotopy_webgl.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_quickstart_show_config.py` (``../examples/quickstart/show_config.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_mni_to_subject.py` (``../examples/utils/mni_to_subject.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_multi_panels_plots.py` (``../examples/utils/multi_panels_plots.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_utils_subject_to_mni.py` (``../examples/utils/subject_to_mni.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_dynamic_with_custom_template.py` (``../examples/webgl/dynamic_with_custom_template.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_multiple_datasets.py` (``../examples/webgl/multiple_datasets.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_single_dataset.py` (``../examples/webgl/single_dataset.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_static.py` (``../examples/webgl/static.py``)
+     - 00:00.000
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_webgl_static_with_custom_template.py` (``../examples/webgl/static_with_custom_template.py``)
+     - 00:00.000
+     - 0.0
diff --git a/_sources/transforms.rst.txt b/_sources/transforms.rst.txt
index e61b1b8ba..4fb41472c 100644
--- a/_sources/transforms.rst.txt
+++ b/_sources/transforms.rst.txt
@@ -6,7 +6,7 @@ pycortex includes a tool based on mayavi_ to do manual **affine** alignments. Pl
 
     * **Subject** : name of the subject, must match the surfaces used to create the transform
     * **Name** : A unique identifier for this transform
-    * **type** : The type of transform -- from fiducial to functional **magnet** space, or fiducial to **coord** inate space
+    * **type** : The type of transform -- from fiducial to functional **magnet** space, or fiducial to **coord** innate space
     * **epifile** : the filename of the functional data that the fiducial is aligned to
 
 Transforms always store the epifile in order to allow visual validation of alignment using the :module:`align` module.
diff --git a/_sources/userguide/webgl.rst.txt b/_sources/userguide/webgl.rst.txt
index da248b6c6..46c45b525 100644
--- a/_sources/userguide/webgl.rst.txt
+++ b/_sources/userguide/webgl.rst.txt
@@ -20,7 +20,7 @@ It is simple to post pycortex visualizations to a web page for public viewing. T
 Using the WebGL Viewer
 ----------------------
 
-There are two ways to create a WebGL viewer. A **dynamic viewer** is temporary viewer that is hosted by the pyhton process that generated it. A **static viewer** is a viewer that is saved permanently to disk and will persist beyond the lifetime of the python process. Using a static viewer requires hosting the created directory with a webserver such as nginx.
+There are two ways to create a WebGL viewer. A **dynamic viewer** is temporary viewer that is hosted by the python process that generated it. A **static viewer** is a viewer that is saved permanently to disk and will persist beyond the lifetime of the python process. Using a static viewer requires hosting the created directory with a webserver such as nginx.
 
 
 Keyboard Shortcuts
diff --git a/_static/alabaster.css b/_static/alabaster.css
index 0eddaeb07..e3174bf93 100644
--- a/_static/alabaster.css
+++ b/_static/alabaster.css
@@ -69,6 +69,11 @@ div.relations {
 }
 
 
+div.sphinxsidebar {
+    max-height: 100%;
+    overflow-y: auto;
+}
+
 div.sphinxsidebar a {
     color: #444;
     text-decoration: none;
@@ -155,6 +160,14 @@ div.sphinxsidebar input {
     font-size: 1em;
 }
 
+div.sphinxsidebar #searchbox input[type="text"] {
+    width: 160px;
+}
+
+div.sphinxsidebar .search > div {
+    display: table-cell;
+}
+
 div.sphinxsidebar hr {
     border: none;
     height: 1px;
@@ -419,7 +432,9 @@ table.footnote td {
 }
 
 dl {
-    margin: 0;
+    margin-left: 0;
+    margin-right: 0;
+    margin-top: 0;
     padding: 0;
 }
 
@@ -636,15 +651,7 @@ a:hover tt, a:hover code {
     display: none!important;
 }
 
-/* Make nested-list/multi-paragraph items look better in Releases changelog
- * pages. Without this, docutils' magical list fuckery causes inconsistent
- * formatting between different release sub-lists.
- */
-div#changelog > div.section > ul > li > p:only-child {
-    margin-bottom: 0;
-}
-
-/* Hide fugly table cell borders in ..bibliography:: directive output */
+/* Hide ugly table cell borders in ..bibliography:: directive output */
 table.docutils.citation, table.docutils.citation td, table.docutils.citation th {
   border: none;
   /* Below needed in some edge cases; if not applied, bottom shadows appear */
diff --git a/_static/basic.css b/_static/basic.css
index bf18350b6..e5179b7a9 100644
--- a/_static/basic.css
+++ b/_static/basic.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -222,7 +222,7 @@ table.modindextable td {
 /* -- general body styles --------------------------------------------------- */
 
 div.body {
-    min-width: 450px;
+    min-width: inherit;
     max-width: 800px;
 }
 
@@ -237,14 +237,8 @@ a.headerlink {
     visibility: hidden;
 }
 
-a.brackets:before,
-span.brackets > a:before{
-    content: "[";
-}
-
-a.brackets:after,
-span.brackets > a:after {
-    content: "]";
+a:visited {
+    color: #551A8B;
 }
 
 h1:hover > a.headerlink,
@@ -335,12 +329,16 @@ p.sidebar-title {
     font-weight: bold;
 }
 
+nav.contents,
+aside.topic,
 div.admonition, div.topic, blockquote {
     clear: left;
 }
 
 /* -- topics ---------------------------------------------------------------- */
 
+nav.contents,
+aside.topic,
 div.topic {
     border: 1px solid #ccc;
     padding: 7px;
@@ -379,6 +377,8 @@ div.body p.centered {
 
 div.sidebar > :last-child,
 aside.sidebar > :last-child,
+nav.contents > :last-child,
+aside.topic > :last-child,
 div.topic > :last-child,
 div.admonition > :last-child {
     margin-bottom: 0;
@@ -386,6 +386,8 @@ div.admonition > :last-child {
 
 div.sidebar::after,
 aside.sidebar::after,
+nav.contents::after,
+aside.topic::after,
 div.topic::after,
 div.admonition::after,
 blockquote::after {
@@ -428,10 +430,6 @@ table.docutils td, table.docutils th {
     border-bottom: 1px solid #aaa;
 }
 
-table.footnote td, table.footnote th {
-    border: 0 !important;
-}
-
 th {
     text-align: left;
     padding-right: 5px;
@@ -615,19 +613,26 @@ ul.simple p {
     margin-bottom: 0;
 }
 
-dl.footnote > dt,
-dl.citation > dt {
+aside.footnote > span,
+div.citation > span {
     float: left;
-    margin-right: 0.5em;
 }
-
-dl.footnote > dd,
-dl.citation > dd {
+aside.footnote > span:last-of-type,
+div.citation > span:last-of-type {
+  padding-right: 0.5em;
+}
+aside.footnote > p {
+  margin-left: 2em;
+}
+div.citation > p {
+  margin-left: 4em;
+}
+aside.footnote > p:last-of-type,
+div.citation > p:last-of-type {
     margin-bottom: 0em;
 }
-
-dl.footnote > dd:after,
-dl.citation > dd:after {
+aside.footnote > p:last-of-type:after,
+div.citation > p:last-of-type:after {
     content: "";
     clear: both;
 }
@@ -644,10 +649,6 @@ dl.field-list > dt {
     padding-right: 5px;
 }
 
-dl.field-list > dt:after {
-    content: ":";
-}
-
 dl.field-list > dd {
     padding-left: 0.5em;
     margin-top: 0em;
@@ -673,6 +674,16 @@ dd {
     margin-left: 30px;
 }
 
+.sig dd {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
+.sig dl {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
 dl > dd:last-child,
 dl > dd:last-child > :last-child {
     margin-bottom: 0;
@@ -741,6 +752,14 @@ abbr, acronym {
     cursor: help;
 }
 
+.translated {
+    background-color: rgba(207, 255, 207, 0.2)
+}
+
+.untranslated {
+    background-color: rgba(255, 207, 207, 0.2)
+}
+
 /* -- code displays --------------------------------------------------------- */
 
 pre {
diff --git a/_static/doctools.js b/_static/doctools.js
index e1bfd708b..4d67807d1 100644
--- a/_static/doctools.js
+++ b/_static/doctools.js
@@ -2,357 +2,155 @@
  * doctools.js
  * ~~~~~~~~~~~
  *
- * Sphinx JavaScript utilities for all documentation.
+ * Base JavaScript utilities for all Sphinx HTML documentation.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
-
-/**
- * select a different prefix for underscore
- */
-$u = _.noConflict();
-
-/**
- * make the code below compatible with browsers without
- * an installed firebug like debugger
-if (!window.console || !console.firebug) {
-  var names = ["log", "debug", "info", "warn", "error", "assert", "dir",
-    "dirxml", "group", "groupEnd", "time", "timeEnd", "count", "trace",
-    "profile", "profileEnd"];
-  window.console = {};
-  for (var i = 0; i < names.length; ++i)
-    window.console[names[i]] = function() {};
-}
- */
-
-/**
- * small helper function to urldecode strings
- *
- * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
- */
-jQuery.urldecode = function(x) {
-  if (!x) {
-    return x
-  }
-  return decodeURIComponent(x.replace(/\+/g, ' '));
-};
-
-/**
- * small helper function to urlencode strings
- */
-jQuery.urlencode = encodeURIComponent;
-
-/**
- * This function returns the parsed url parameters of the
- * current request. Multiple values per key are supported,
- * it will always return arrays of strings for the value parts.
- */
-jQuery.getQueryParameters = function(s) {
-  if (typeof s === 'undefined')
-    s = document.location.search;
-  var parts = s.substr(s.indexOf('?') + 1).split('&');
-  var result = {};
-  for (var i = 0; i < parts.length; i++) {
-    var tmp = parts[i].split('=', 2);
-    var key = jQuery.urldecode(tmp[0]);
-    var value = jQuery.urldecode(tmp[1]);
-    if (key in result)
-      result[key].push(value);
-    else
-      result[key] = [value];
-  }
-  return result;
-};
-
-/**
- * highlight a given string on a jquery object by wrapping it in
- * span elements with the given class name.
- */
-jQuery.fn.highlightText = function(text, className) {
-  function highlight(node, addItems) {
-    if (node.nodeType === 3) {
-      var val = node.nodeValue;
-      var pos = val.toLowerCase().indexOf(text);
-      if (pos >= 0 &&
-          !jQuery(node.parentNode).hasClass(className) &&
-          !jQuery(node.parentNode).hasClass("nohighlight")) {
-        var span;
-        var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg");
-        if (isInSVG) {
-          span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
-        } else {
-          span = document.createElement("span");
-          span.className = className;
-        }
-        span.appendChild(document.createTextNode(val.substr(pos, text.length)));
-        node.parentNode.insertBefore(span, node.parentNode.insertBefore(
-          document.createTextNode(val.substr(pos + text.length)),
-          node.nextSibling));
-        node.nodeValue = val.substr(0, pos);
-        if (isInSVG) {
-          var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect");
-          var bbox = node.parentElement.getBBox();
-          rect.x.baseVal.value = bbox.x;
-          rect.y.baseVal.value = bbox.y;
-          rect.width.baseVal.value = bbox.width;
-          rect.height.baseVal.value = bbox.height;
-          rect.setAttribute('class', className);
-          addItems.push({
-              "parent": node.parentNode,
-              "target": rect});
-        }
-      }
-    }
-    else if (!jQuery(node).is("button, select, textarea")) {
-      jQuery.each(node.childNodes, function() {
-        highlight(this, addItems);
-      });
-    }
-  }
-  var addItems = [];
-  var result = this.each(function() {
-    highlight(this, addItems);
-  });
-  for (var i = 0; i < addItems.length; ++i) {
-    jQuery(addItems[i].parent).before(addItems[i].target);
+"use strict";
+
+const BLACKLISTED_KEY_CONTROL_ELEMENTS = new Set([
+  "TEXTAREA",
+  "INPUT",
+  "SELECT",
+  "BUTTON",
+]);
+
+const _ready = (callback) => {
+  if (document.readyState !== "loading") {
+    callback();
+  } else {
+    document.addEventListener("DOMContentLoaded", callback);
   }
-  return result;
 };
 
-/*
- * backward compatibility for jQuery.browser
- * This will be supported until firefox bug is fixed.
- */
-if (!jQuery.browser) {
-  jQuery.uaMatch = function(ua) {
-    ua = ua.toLowerCase();
-
-    var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
-      /(webkit)[ \/]([\w.]+)/.exec(ua) ||
-      /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) ||
-      /(msie) ([\w.]+)/.exec(ua) ||
-      ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) ||
-      [];
-
-    return {
-      browser: match[ 1 ] || "",
-      version: match[ 2 ] || "0"
-    };
-  };
-  jQuery.browser = {};
-  jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true;
-}
-
 /**
  * Small JavaScript module for the documentation.
  */
-var Documentation = {
-
-  init : function() {
-    this.fixFirefoxAnchorBug();
-    this.highlightSearchWords();
-    this.initIndexTable();
-    this.initOnKeyListeners();
+const Documentation = {
+  init: () => {
+    Documentation.initDomainIndexTable();
+    Documentation.initOnKeyListeners();
   },
 
   /**
    * i18n support
    */
-  TRANSLATIONS : {},
-  PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; },
-  LOCALE : 'unknown',
+  TRANSLATIONS: {},
+  PLURAL_EXPR: (n) => (n === 1 ? 0 : 1),
+  LOCALE: "unknown",
 
   // gettext and ngettext don't access this so that the functions
   // can safely bound to a different name (_ = Documentation.gettext)
-  gettext : function(string) {
-    var translated = Documentation.TRANSLATIONS[string];
-    if (typeof translated === 'undefined')
-      return string;
-    return (typeof translated === 'string') ? translated : translated[0];
-  },
-
-  ngettext : function(singular, plural, n) {
-    var translated = Documentation.TRANSLATIONS[singular];
-    if (typeof translated === 'undefined')
-      return (n == 1) ? singular : plural;
-    return translated[Documentation.PLURALEXPR(n)];
-  },
-
-  addTranslations : function(catalog) {
-    for (var key in catalog.messages)
-      this.TRANSLATIONS[key] = catalog.messages[key];
-    this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')');
-    this.LOCALE = catalog.locale;
-  },
-
-  /**
-   * add context elements like header anchor links
-   */
-  addContextElements : function() {
-    $('div[id] > :header:first').each(function() {
-      $('<a class="headerlink">\u00B6</a>').
-      attr('href', '#' + this.id).
-      attr('title', _('Permalink to this headline')).
-      appendTo(this);
-    });
-    $('dt[id]').each(function() {
-      $('<a class="headerlink">\u00B6</a>').
-      attr('href', '#' + this.id).
-      attr('title', _('Permalink to this definition')).
-      appendTo(this);
-    });
-  },
-
-  /**
-   * workaround a firefox stupidity
-   * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075
-   */
-  fixFirefoxAnchorBug : function() {
-    if (document.location.hash && $.browser.mozilla)
-      window.setTimeout(function() {
-        document.location.href += '';
-      }, 10);
-  },
-
-  /**
-   * highlight the search words provided in the url in the text
-   */
-  highlightSearchWords : function() {
-    var params = $.getQueryParameters();
-    var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : [];
-    if (terms.length) {
-      var body = $('div.body');
-      if (!body.length) {
-        body = $('body');
-      }
-      window.setTimeout(function() {
-        $.each(terms, function() {
-          body.highlightText(this.toLowerCase(), 'highlighted');
-        });
-      }, 10);
-      $('<p class="highlight-link"><a href="javascript:Documentation.' +
-        'hideSearchWords()">' + _('Hide Search Matches') + '</a></p>')
-          .appendTo($('#searchbox'));
+  gettext: (string) => {
+    const translated = Documentation.TRANSLATIONS[string];
+    switch (typeof translated) {
+      case "undefined":
+        return string; // no translation
+      case "string":
+        return translated; // translation exists
+      default:
+        return translated[0]; // (singular, plural) translation tuple exists
     }
   },
 
-  /**
-   * init the domain index toggle buttons
-   */
-  initIndexTable : function() {
-    var togglers = $('img.toggler').click(function() {
-      var src = $(this).attr('src');
-      var idnum = $(this).attr('id').substr(7);
-      $('tr.cg-' + idnum).toggle();
-      if (src.substr(-9) === 'minus.png')
-        $(this).attr('src', src.substr(0, src.length-9) + 'plus.png');
-      else
-        $(this).attr('src', src.substr(0, src.length-8) + 'minus.png');
-    }).css('display', '');
-    if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) {
-        togglers.click();
-    }
+  ngettext: (singular, plural, n) => {
+    const translated = Documentation.TRANSLATIONS[singular];
+    if (typeof translated !== "undefined")
+      return translated[Documentation.PLURAL_EXPR(n)];
+    return n === 1 ? singular : plural;
   },
 
-  /**
-   * helper function to hide the search marks again
-   */
-  hideSearchWords : function() {
-    $('#searchbox .highlight-link').fadeOut(300);
-    $('span.highlighted').removeClass('highlighted');
-    var url = new URL(window.location);
-    url.searchParams.delete('highlight');
-    window.history.replaceState({}, '', url);
+  addTranslations: (catalog) => {
+    Object.assign(Documentation.TRANSLATIONS, catalog.messages);
+    Documentation.PLURAL_EXPR = new Function(
+      "n",
+      `return (${catalog.plural_expr})`
+    );
+    Documentation.LOCALE = catalog.locale;
   },
 
-   /**
+  /**
    * helper function to focus on search bar
    */
-  focusSearchBar : function() {
-    $('input[name=q]').first().focus();
+  focusSearchBar: () => {
+    document.querySelectorAll("input[name=q]")[0]?.focus();
   },
 
   /**
-   * make the url absolute
+   * Initialise the domain index toggle buttons
    */
-  makeURL : function(relativeURL) {
-    return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL;
-  },
+  initDomainIndexTable: () => {
+    const toggler = (el) => {
+      const idNumber = el.id.substr(7);
+      const toggledRows = document.querySelectorAll(`tr.cg-${idNumber}`);
+      if (el.src.substr(-9) === "minus.png") {
+        el.src = `${el.src.substr(0, el.src.length - 9)}plus.png`;
+        toggledRows.forEach((el) => (el.style.display = "none"));
+      } else {
+        el.src = `${el.src.substr(0, el.src.length - 8)}minus.png`;
+        toggledRows.forEach((el) => (el.style.display = ""));
+      }
+    };
 
-  /**
-   * get the current relative url
-   */
-  getCurrentURL : function() {
-    var path = document.location.pathname;
-    var parts = path.split(/\//);
-    $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() {
-      if (this === '..')
-        parts.pop();
-    });
-    var url = parts.join('/');
-    return path.substring(url.lastIndexOf('/') + 1, path.length - 1);
+    const togglerElements = document.querySelectorAll("img.toggler");
+    togglerElements.forEach((el) =>
+      el.addEventListener("click", (event) => toggler(event.currentTarget))
+    );
+    togglerElements.forEach((el) => (el.style.display = ""));
+    if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) togglerElements.forEach(toggler);
   },
 
-  initOnKeyListeners: function() {
+  initOnKeyListeners: () => {
     // only install a listener if it is really needed
-    if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS &&
-        !DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS)
-        return;
-
-    $(document).keydown(function(event) {
-      var activeElementType = document.activeElement.tagName;
-      // don't navigate when in search box, textarea, dropdown or button
-      if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT'
-          && activeElementType !== 'BUTTON') {
-        if (event.altKey || event.ctrlKey || event.metaKey)
-          return;
-
-          if (!event.shiftKey) {
-            switch (event.key) {
-              case 'ArrowLeft':
-                if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS)
-                  break;
-                var prevHref = $('link[rel="prev"]').prop('href');
-                if (prevHref) {
-                  window.location.href = prevHref;
-                  return false;
-                }
-                break;
-              case 'ArrowRight':
-                if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS)
-                  break;
-                var nextHref = $('link[rel="next"]').prop('href');
-                if (nextHref) {
-                  window.location.href = nextHref;
-                  return false;
-                }
-                break;
-              case 'Escape':
-                if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS)
-                  break;
-                Documentation.hideSearchWords();
-                return false;
-          }
-        }
-
-        // some keyboard layouts may need Shift to get /
+    if (
+      !DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS &&
+      !DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS
+    )
+      return;
+
+    document.addEventListener("keydown", (event) => {
+      // bail for input elements
+      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return;
+      // bail with special keys
+      if (event.altKey || event.ctrlKey || event.metaKey) return;
+
+      if (!event.shiftKey) {
         switch (event.key) {
-          case '/':
-            if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS)
-              break;
-            Documentation.focusSearchBar();
-            return false;
+          case "ArrowLeft":
+            if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) break;
+
+            const prevLink = document.querySelector('link[rel="prev"]');
+            if (prevLink && prevLink.href) {
+              window.location.href = prevLink.href;
+              event.preventDefault();
+            }
+            break;
+          case "ArrowRight":
+            if (!DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) break;
+
+            const nextLink = document.querySelector('link[rel="next"]');
+            if (nextLink && nextLink.href) {
+              window.location.href = nextLink.href;
+              event.preventDefault();
+            }
+            break;
         }
       }
+
+      // some keyboard layouts may need Shift to get /
+      switch (event.key) {
+        case "/":
+          if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) break;
+          Documentation.focusSearchBar();
+          event.preventDefault();
+      }
     });
-  }
+  },
 };
 
 // quick alias for translations
-_ = Documentation.gettext;
+const _ = Documentation.gettext;
 
-$(document).ready(function() {
-  Documentation.init();
-});
+_ready(Documentation.init);
diff --git a/_static/documentation_options.js b/_static/documentation_options.js
index 62e970da4..c60288528 100644
--- a/_static/documentation_options.js
+++ b/_static/documentation_options.js
@@ -1,7 +1,6 @@
-var DOCUMENTATION_OPTIONS = {
-    URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.2.4',
-    LANGUAGE: 'None',
+const DOCUMENTATION_OPTIONS = {
+    VERSION: '1.2.8',
+    LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',
     FILE_SUFFIX: '.html',
diff --git a/_static/jquery-3.5.1.js b/_static/jquery-3.5.1.js
deleted file mode 100644
index 50937333b..000000000
--- a/_static/jquery-3.5.1.js
+++ /dev/null
@@ -1,10872 +0,0 @@
-/*!
- * jQuery JavaScript Library v3.5.1
- * https://jquery.com/
- *
- * Includes Sizzle.js
- * https://sizzlejs.com/
- *
- * Copyright JS Foundation and other contributors
- * Released under the MIT license
- * https://jquery.org/license
- *
- * Date: 2020-05-04T22:49Z
- */
-( function( global, factory ) {
-
-	"use strict";
-
-	if ( typeof module === "object" && typeof module.exports === "object" ) {
-
-		// For CommonJS and CommonJS-like environments where a proper `window`
-		// is present, execute the factory and get jQuery.
-		// For environments that do not have a `window` with a `document`
-		// (such as Node.js), expose a factory as module.exports.
-		// This accentuates the need for the creation of a real `window`.
-		// e.g. var jQuery = require("jquery")(window);
-		// See ticket #14549 for more info.
-		module.exports = global.document ?
-			factory( global, true ) :
-			function( w ) {
-				if ( !w.document ) {
-					throw new Error( "jQuery requires a window with a document" );
-				}
-				return factory( w );
-			};
-	} else {
-		factory( global );
-	}
-
-// Pass this if window is not defined yet
-} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) {
-
-// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1
-// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode
-// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common
-// enough that all such attempts are guarded in a try block.
-"use strict";
-
-var arr = [];
-
-var getProto = Object.getPrototypeOf;
-
-var slice = arr.slice;
-
-var flat = arr.flat ? function( array ) {
-	return arr.flat.call( array );
-} : function( array ) {
-	return arr.concat.apply( [], array );
-};
-
-
-var push = arr.push;
-
-var indexOf = arr.indexOf;
-
-var class2type = {};
-
-var toString = class2type.toString;
-
-var hasOwn = class2type.hasOwnProperty;
-
-var fnToString = hasOwn.toString;
-
-var ObjectFunctionString = fnToString.call( Object );
-
-var support = {};
-
-var isFunction = function isFunction( obj ) {
-
-      // Support: Chrome <=57, Firefox <=52
-      // In some browsers, typeof returns "function" for HTML <object> elements
-      // (i.e., `typeof document.createElement( "object" ) === "function"`).
-      // We don't want to classify *any* DOM node as a function.
-      return typeof obj === "function" && typeof obj.nodeType !== "number";
-  };
-
-
-var isWindow = function isWindow( obj ) {
-		return obj != null && obj === obj.window;
-	};
-
-
-var document = window.document;
-
-
-
-	var preservedScriptAttributes = {
-		type: true,
-		src: true,
-		nonce: true,
-		noModule: true
-	};
-
-	function DOMEval( code, node, doc ) {
-		doc = doc || document;
-
-		var i, val,
-			script = doc.createElement( "script" );
-
-		script.text = code;
-		if ( node ) {
-			for ( i in preservedScriptAttributes ) {
-
-				// Support: Firefox 64+, Edge 18+
-				// Some browsers don't support the "nonce" property on scripts.
-				// On the other hand, just using `getAttribute` is not enough as
-				// the `nonce` attribute is reset to an empty string whenever it
-				// becomes browsing-context connected.
-				// See https://github.com/whatwg/html/issues/2369
-				// See https://html.spec.whatwg.org/#nonce-attributes
-				// The `node.getAttribute` check was added for the sake of
-				// `jQuery.globalEval` so that it can fake a nonce-containing node
-				// via an object.
-				val = node[ i ] || node.getAttribute && node.getAttribute( i );
-				if ( val ) {
-					script.setAttribute( i, val );
-				}
-			}
-		}
-		doc.head.appendChild( script ).parentNode.removeChild( script );
-	}
-
-
-function toType( obj ) {
-	if ( obj == null ) {
-		return obj + "";
-	}
-
-	// Support: Android <=2.3 only (functionish RegExp)
-	return typeof obj === "object" || typeof obj === "function" ?
-		class2type[ toString.call( obj ) ] || "object" :
-		typeof obj;
-}
-/* global Symbol */
-// Defining this global in .eslintrc.json would create a danger of using the global
-// unguarded in another place, it seems safer to define global only for this module
-
-
-
-var
-	version = "3.5.1",
-
-	// Define a local copy of jQuery
-	jQuery = function( selector, context ) {
-
-		// The jQuery object is actually just the init constructor 'enhanced'
-		// Need init if jQuery is called (just allow error to be thrown if not included)
-		return new jQuery.fn.init( selector, context );
-	};
-
-jQuery.fn = jQuery.prototype = {
-
-	// The current version of jQuery being used
-	jquery: version,
-
-	constructor: jQuery,
-
-	// The default length of a jQuery object is 0
-	length: 0,
-
-	toArray: function() {
-		return slice.call( this );
-	},
-
-	// Get the Nth element in the matched element set OR
-	// Get the whole matched element set as a clean array
-	get: function( num ) {
-
-		// Return all the elements in a clean array
-		if ( num == null ) {
-			return slice.call( this );
-		}
-
-		// Return just the one element from the set
-		return num < 0 ? this[ num + this.length ] : this[ num ];
-	},
-
-	// Take an array of elements and push it onto the stack
-	// (returning the new matched element set)
-	pushStack: function( elems ) {
-
-		// Build a new jQuery matched element set
-		var ret = jQuery.merge( this.constructor(), elems );
-
-		// Add the old object onto the stack (as a reference)
-		ret.prevObject = this;
-
-		// Return the newly-formed element set
-		return ret;
-	},
-
-	// Execute a callback for every element in the matched set.
-	each: function( callback ) {
-		return jQuery.each( this, callback );
-	},
-
-	map: function( callback ) {
-		return this.pushStack( jQuery.map( this, function( elem, i ) {
-			return callback.call( elem, i, elem );
-		} ) );
-	},
-
-	slice: function() {
-		return this.pushStack( slice.apply( this, arguments ) );
-	},
-
-	first: function() {
-		return this.eq( 0 );
-	},
-
-	last: function() {
-		return this.eq( -1 );
-	},
-
-	even: function() {
-		return this.pushStack( jQuery.grep( this, function( _elem, i ) {
-			return ( i + 1 ) % 2;
-		} ) );
-	},
-
-	odd: function() {
-		return this.pushStack( jQuery.grep( this, function( _elem, i ) {
-			return i % 2;
-		} ) );
-	},
-
-	eq: function( i ) {
-		var len = this.length,
-			j = +i + ( i < 0 ? len : 0 );
-		return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] );
-	},
-
-	end: function() {
-		return this.prevObject || this.constructor();
-	},
-
-	// For internal use only.
-	// Behaves like an Array's method, not like a jQuery method.
-	push: push,
-	sort: arr.sort,
-	splice: arr.splice
-};
-
-jQuery.extend = jQuery.fn.extend = function() {
-	var options, name, src, copy, copyIsArray, clone,
-		target = arguments[ 0 ] || {},
-		i = 1,
-		length = arguments.length,
-		deep = false;
-
-	// Handle a deep copy situation
-	if ( typeof target === "boolean" ) {
-		deep = target;
-
-		// Skip the boolean and the target
-		target = arguments[ i ] || {};
-		i++;
-	}
-
-	// Handle case when target is a string or something (possible in deep copy)
-	if ( typeof target !== "object" && !isFunction( target ) ) {
-		target = {};
-	}
-
-	// Extend jQuery itself if only one argument is passed
-	if ( i === length ) {
-		target = this;
-		i--;
-	}
-
-	for ( ; i < length; i++ ) {
-
-		// Only deal with non-null/undefined values
-		if ( ( options = arguments[ i ] ) != null ) {
-
-			// Extend the base object
-			for ( name in options ) {
-				copy = options[ name ];
-
-				// Prevent Object.prototype pollution
-				// Prevent never-ending loop
-				if ( name === "__proto__" || target === copy ) {
-					continue;
-				}
-
-				// Recurse if we're merging plain objects or arrays
-				if ( deep && copy && ( jQuery.isPlainObject( copy ) ||
-					( copyIsArray = Array.isArray( copy ) ) ) ) {
-					src = target[ name ];
-
-					// Ensure proper type for the source value
-					if ( copyIsArray && !Array.isArray( src ) ) {
-						clone = [];
-					} else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) {
-						clone = {};
-					} else {
-						clone = src;
-					}
-					copyIsArray = false;
-
-					// Never move original objects, clone them
-					target[ name ] = jQuery.extend( deep, clone, copy );
-
-				// Don't bring in undefined values
-				} else if ( copy !== undefined ) {
-					target[ name ] = copy;
-				}
-			}
-		}
-	}
-
-	// Return the modified object
-	return target;
-};
-
-jQuery.extend( {
-
-	// Unique for each copy of jQuery on the page
-	expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ),
-
-	// Assume jQuery is ready without the ready module
-	isReady: true,
-
-	error: function( msg ) {
-		throw new Error( msg );
-	},
-
-	noop: function() {},
-
-	isPlainObject: function( obj ) {
-		var proto, Ctor;
-
-		// Detect obvious negatives
-		// Use toString instead of jQuery.type to catch host objects
-		if ( !obj || toString.call( obj ) !== "[object Object]" ) {
-			return false;
-		}
-
-		proto = getProto( obj );
-
-		// Objects with no prototype (e.g., `Object.create( null )`) are plain
-		if ( !proto ) {
-			return true;
-		}
-
-		// Objects with prototype are plain iff they were constructed by a global Object function
-		Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor;
-		return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString;
-	},
-
-	isEmptyObject: function( obj ) {
-		var name;
-
-		for ( name in obj ) {
-			return false;
-		}
-		return true;
-	},
-
-	// Evaluates a script in a provided context; falls back to the global one
-	// if not specified.
-	globalEval: function( code, options, doc ) {
-		DOMEval( code, { nonce: options && options.nonce }, doc );
-	},
-
-	each: function( obj, callback ) {
-		var length, i = 0;
-
-		if ( isArrayLike( obj ) ) {
-			length = obj.length;
-			for ( ; i < length; i++ ) {
-				if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) {
-					break;
-				}
-			}
-		} else {
-			for ( i in obj ) {
-				if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) {
-					break;
-				}
-			}
-		}
-
-		return obj;
-	},
-
-	// results is for internal usage only
-	makeArray: function( arr, results ) {
-		var ret = results || [];
-
-		if ( arr != null ) {
-			if ( isArrayLike( Object( arr ) ) ) {
-				jQuery.merge( ret,
-					typeof arr === "string" ?
-					[ arr ] : arr
-				);
-			} else {
-				push.call( ret, arr );
-			}
-		}
-
-		return ret;
-	},
-
-	inArray: function( elem, arr, i ) {
-		return arr == null ? -1 : indexOf.call( arr, elem, i );
-	},
-
-	// Support: Android <=4.0 only, PhantomJS 1 only
-	// push.apply(_, arraylike) throws on ancient WebKit
-	merge: function( first, second ) {
-		var len = +second.length,
-			j = 0,
-			i = first.length;
-
-		for ( ; j < len; j++ ) {
-			first[ i++ ] = second[ j ];
-		}
-
-		first.length = i;
-
-		return first;
-	},
-
-	grep: function( elems, callback, invert ) {
-		var callbackInverse,
-			matches = [],
-			i = 0,
-			length = elems.length,
-			callbackExpect = !invert;
-
-		// Go through the array, only saving the items
-		// that pass the validator function
-		for ( ; i < length; i++ ) {
-			callbackInverse = !callback( elems[ i ], i );
-			if ( callbackInverse !== callbackExpect ) {
-				matches.push( elems[ i ] );
-			}
-		}
-
-		return matches;
-	},
-
-	// arg is for internal usage only
-	map: function( elems, callback, arg ) {
-		var length, value,
-			i = 0,
-			ret = [];
-
-		// Go through the array, translating each of the items to their new values
-		if ( isArrayLike( elems ) ) {
-			length = elems.length;
-			for ( ; i < length; i++ ) {
-				value = callback( elems[ i ], i, arg );
-
-				if ( value != null ) {
-					ret.push( value );
-				}
-			}
-
-		// Go through every key on the object,
-		} else {
-			for ( i in elems ) {
-				value = callback( elems[ i ], i, arg );
-
-				if ( value != null ) {
-					ret.push( value );
-				}
-			}
-		}
-
-		// Flatten any nested arrays
-		return flat( ret );
-	},
-
-	// A global GUID counter for objects
-	guid: 1,
-
-	// jQuery.support is not used in Core but other projects attach their
-	// properties to it so it needs to exist.
-	support: support
-} );
-
-if ( typeof Symbol === "function" ) {
-	jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ];
-}
-
-// Populate the class2type map
-jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ),
-function( _i, name ) {
-	class2type[ "[object " + name + "]" ] = name.toLowerCase();
-} );
-
-function isArrayLike( obj ) {
-
-	// Support: real iOS 8.2 only (not reproducible in simulator)
-	// `in` check used to prevent JIT error (gh-2145)
-	// hasOwn isn't used here due to false negatives
-	// regarding Nodelist length in IE
-	var length = !!obj && "length" in obj && obj.length,
-		type = toType( obj );
-
-	if ( isFunction( obj ) || isWindow( obj ) ) {
-		return false;
-	}
-
-	return type === "array" || length === 0 ||
-		typeof length === "number" && length > 0 && ( length - 1 ) in obj;
-}
-var Sizzle =
-/*!
- * Sizzle CSS Selector Engine v2.3.5
- * https://sizzlejs.com/
- *
- * Copyright JS Foundation and other contributors
- * Released under the MIT license
- * https://js.foundation/
- *
- * Date: 2020-03-14
- */
-( function( window ) {
-var i,
-	support,
-	Expr,
-	getText,
-	isXML,
-	tokenize,
-	compile,
-	select,
-	outermostContext,
-	sortInput,
-	hasDuplicate,
-
-	// Local document vars
-	setDocument,
-	document,
-	docElem,
-	documentIsHTML,
-	rbuggyQSA,
-	rbuggyMatches,
-	matches,
-	contains,
-
-	// Instance-specific data
-	expando = "sizzle" + 1 * new Date(),
-	preferredDoc = window.document,
-	dirruns = 0,
-	done = 0,
-	classCache = createCache(),
-	tokenCache = createCache(),
-	compilerCache = createCache(),
-	nonnativeSelectorCache = createCache(),
-	sortOrder = function( a, b ) {
-		if ( a === b ) {
-			hasDuplicate = true;
-		}
-		return 0;
-	},
-
-	// Instance methods
-	hasOwn = ( {} ).hasOwnProperty,
-	arr = [],
-	pop = arr.pop,
-	pushNative = arr.push,
-	push = arr.push,
-	slice = arr.slice,
-
-	// Use a stripped-down indexOf as it's faster than native
-	// https://jsperf.com/thor-indexof-vs-for/5
-	indexOf = function( list, elem ) {
-		var i = 0,
-			len = list.length;
-		for ( ; i < len; i++ ) {
-			if ( list[ i ] === elem ) {
-				return i;
-			}
-		}
-		return -1;
-	},
-
-	booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|" +
-		"ismap|loop|multiple|open|readonly|required|scoped",
-
-	// Regular expressions
-
-	// http://www.w3.org/TR/css3-selectors/#whitespace
-	whitespace = "[\\x20\\t\\r\\n\\f]",
-
-	// https://www.w3.org/TR/css-syntax-3/#ident-token-diagram
-	identifier = "(?:\\\\[\\da-fA-F]{1,6}" + whitespace +
-		"?|\\\\[^\\r\\n\\f]|[\\w-]|[^\0-\\x7f])+",
-
-	// Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors
-	attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace +
-
-		// Operator (capture 2)
-		"*([*^$|!~]?=)" + whitespace +
-
-		// "Attribute values must be CSS identifiers [capture 5]
-		// or strings [capture 3 or capture 4]"
-		"*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" +
-		whitespace + "*\\]",
-
-	pseudos = ":(" + identifier + ")(?:\\((" +
-
-		// To reduce the number of selectors needing tokenize in the preFilter, prefer arguments:
-		// 1. quoted (capture 3; capture 4 or capture 5)
-		"('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" +
-
-		// 2. simple (capture 6)
-		"((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" +
-
-		// 3. anything else (capture 2)
-		".*" +
-		")\\)|)",
-
-	// Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter
-	rwhitespace = new RegExp( whitespace + "+", "g" ),
-	rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" +
-		whitespace + "+$", "g" ),
-
-	rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ),
-	rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace +
-		"*" ),
-	rdescend = new RegExp( whitespace + "|>" ),
-
-	rpseudo = new RegExp( pseudos ),
-	ridentifier = new RegExp( "^" + identifier + "$" ),
-
-	matchExpr = {
-		"ID": new RegExp( "^#(" + identifier + ")" ),
-		"CLASS": new RegExp( "^\\.(" + identifier + ")" ),
-		"TAG": new RegExp( "^(" + identifier + "|[*])" ),
-		"ATTR": new RegExp( "^" + attributes ),
-		"PSEUDO": new RegExp( "^" + pseudos ),
-		"CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" +
-			whitespace + "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" +
-			whitespace + "*(\\d+)|))" + whitespace + "*\\)|)", "i" ),
-		"bool": new RegExp( "^(?:" + booleans + ")$", "i" ),
-
-		// For use in libraries implementing .is()
-		// We use this for POS matching in `select`
-		"needsContext": new RegExp( "^" + whitespace +
-			"*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + whitespace +
-			"*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" )
-	},
-
-	rhtml = /HTML$/i,
-	rinputs = /^(?:input|select|textarea|button)$/i,
-	rheader = /^h\d$/i,
-
-	rnative = /^[^{]+\{\s*\[native \w/,
-
-	// Easily-parseable/retrievable ID or TAG or CLASS selectors
-	rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/,
-
-	rsibling = /[+~]/,
-
-	// CSS escapes
-	// http://www.w3.org/TR/CSS21/syndata.html#escaped-characters
-	runescape = new RegExp( "\\\\[\\da-fA-F]{1,6}" + whitespace + "?|\\\\([^\\r\\n\\f])", "g" ),
-	funescape = function( escape, nonHex ) {
-		var high = "0x" + escape.slice( 1 ) - 0x10000;
-
-		return nonHex ?
-
-			// Strip the backslash prefix from a non-hex escape sequence
-			nonHex :
-
-			// Replace a hexadecimal escape sequence with the encoded Unicode code point
-			// Support: IE <=11+
-			// For values outside the Basic Multilingual Plane (BMP), manually construct a
-			// surrogate pair
-			high < 0 ?
-				String.fromCharCode( high + 0x10000 ) :
-				String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 );
-	},
-
-	// CSS string/identifier serialization
-	// https://drafts.csswg.org/cssom/#common-serializing-idioms
-	rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g,
-	fcssescape = function( ch, asCodePoint ) {
-		if ( asCodePoint ) {
-
-			// U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER
-			if ( ch === "\0" ) {
-				return "\uFFFD";
-			}
-
-			// Control characters and (dependent upon position) numbers get escaped as code points
-			return ch.slice( 0, -1 ) + "\\" +
-				ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " ";
-		}
-
-		// Other potentially-special ASCII characters get backslash-escaped
-		return "\\" + ch;
-	},
-
-	// Used for iframes
-	// See setDocument()
-	// Removing the function wrapper causes a "Permission Denied"
-	// error in IE
-	unloadHandler = function() {
-		setDocument();
-	},
-
-	inDisabledFieldset = addCombinator(
-		function( elem ) {
-			return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset";
-		},
-		{ dir: "parentNode", next: "legend" }
-	);
-
-// Optimize for push.apply( _, NodeList )
-try {
-	push.apply(
-		( arr = slice.call( preferredDoc.childNodes ) ),
-		preferredDoc.childNodes
-	);
-
-	// Support: Android<4.0
-	// Detect silently failing push.apply
-	// eslint-disable-next-line no-unused-expressions
-	arr[ preferredDoc.childNodes.length ].nodeType;
-} catch ( e ) {
-	push = { apply: arr.length ?
-
-		// Leverage slice if possible
-		function( target, els ) {
-			pushNative.apply( target, slice.call( els ) );
-		} :
-
-		// Support: IE<9
-		// Otherwise append directly
-		function( target, els ) {
-			var j = target.length,
-				i = 0;
-
-			// Can't trust NodeList.length
-			while ( ( target[ j++ ] = els[ i++ ] ) ) {}
-			target.length = j - 1;
-		}
-	};
-}
-
-function Sizzle( selector, context, results, seed ) {
-	var m, i, elem, nid, match, groups, newSelector,
-		newContext = context && context.ownerDocument,
-
-		// nodeType defaults to 9, since context defaults to document
-		nodeType = context ? context.nodeType : 9;
-
-	results = results || [];
-
-	// Return early from calls with invalid selector or context
-	if ( typeof selector !== "string" || !selector ||
-		nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) {
-
-		return results;
-	}
-
-	// Try to shortcut find operations (as opposed to filters) in HTML documents
-	if ( !seed ) {
-		setDocument( context );
-		context = context || document;
-
-		if ( documentIsHTML ) {
-
-			// If the selector is sufficiently simple, try using a "get*By*" DOM method
-			// (excepting DocumentFragment context, where the methods don't exist)
-			if ( nodeType !== 11 && ( match = rquickExpr.exec( selector ) ) ) {
-
-				// ID selector
-				if ( ( m = match[ 1 ] ) ) {
-
-					// Document context
-					if ( nodeType === 9 ) {
-						if ( ( elem = context.getElementById( m ) ) ) {
-
-							// Support: IE, Opera, Webkit
-							// TODO: identify versions
-							// getElementById can match elements by name instead of ID
-							if ( elem.id === m ) {
-								results.push( elem );
-								return results;
-							}
-						} else {
-							return results;
-						}
-
-					// Element context
-					} else {
-
-						// Support: IE, Opera, Webkit
-						// TODO: identify versions
-						// getElementById can match elements by name instead of ID
-						if ( newContext && ( elem = newContext.getElementById( m ) ) &&
-							contains( context, elem ) &&
-							elem.id === m ) {
-
-							results.push( elem );
-							return results;
-						}
-					}
-
-				// Type selector
-				} else if ( match[ 2 ] ) {
-					push.apply( results, context.getElementsByTagName( selector ) );
-					return results;
-
-				// Class selector
-				} else if ( ( m = match[ 3 ] ) && support.getElementsByClassName &&
-					context.getElementsByClassName ) {
-
-					push.apply( results, context.getElementsByClassName( m ) );
-					return results;
-				}
-			}
-
-			// Take advantage of querySelectorAll
-			if ( support.qsa &&
-				!nonnativeSelectorCache[ selector + " " ] &&
-				( !rbuggyQSA || !rbuggyQSA.test( selector ) ) &&
-
-				// Support: IE 8 only
-				// Exclude object elements
-				( nodeType !== 1 || context.nodeName.toLowerCase() !== "object" ) ) {
-
-				newSelector = selector;
-				newContext = context;
-
-				// qSA considers elements outside a scoping root when evaluating child or
-				// descendant combinators, which is not what we want.
-				// In such cases, we work around the behavior by prefixing every selector in the
-				// list with an ID selector referencing the scope context.
-				// The technique has to be used as well when a leading combinator is used
-				// as such selectors are not recognized by querySelectorAll.
-				// Thanks to Andrew Dupont for this technique.
-				if ( nodeType === 1 &&
-					( rdescend.test( selector ) || rcombinators.test( selector ) ) ) {
-
-					// Expand context for sibling selectors
-					newContext = rsibling.test( selector ) && testContext( context.parentNode ) ||
-						context;
-
-					// We can use :scope instead of the ID hack if the browser
-					// supports it & if we're not changing the context.
-					if ( newContext !== context || !support.scope ) {
-
-						// Capture the context ID, setting it first if necessary
-						if ( ( nid = context.getAttribute( "id" ) ) ) {
-							nid = nid.replace( rcssescape, fcssescape );
-						} else {
-							context.setAttribute( "id", ( nid = expando ) );
-						}
-					}
-
-					// Prefix every selector in the list
-					groups = tokenize( selector );
-					i = groups.length;
-					while ( i-- ) {
-						groups[ i ] = ( nid ? "#" + nid : ":scope" ) + " " +
-							toSelector( groups[ i ] );
-					}
-					newSelector = groups.join( "," );
-				}
-
-				try {
-					push.apply( results,
-						newContext.querySelectorAll( newSelector )
-					);
-					return results;
-				} catch ( qsaError ) {
-					nonnativeSelectorCache( selector, true );
-				} finally {
-					if ( nid === expando ) {
-						context.removeAttribute( "id" );
-					}
-				}
-			}
-		}
-	}
-
-	// All others
-	return select( selector.replace( rtrim, "$1" ), context, results, seed );
-}
-
-/**
- * Create key-value caches of limited size
- * @returns {function(string, object)} Returns the Object data after storing it on itself with
- *	property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength)
- *	deleting the oldest entry
- */
-function createCache() {
-	var keys = [];
-
-	function cache( key, value ) {
-
-		// Use (key + " ") to avoid collision with native prototype properties (see Issue #157)
-		if ( keys.push( key + " " ) > Expr.cacheLength ) {
-
-			// Only keep the most recent entries
-			delete cache[ keys.shift() ];
-		}
-		return ( cache[ key + " " ] = value );
-	}
-	return cache;
-}
-
-/**
- * Mark a function for special use by Sizzle
- * @param {Function} fn The function to mark
- */
-function markFunction( fn ) {
-	fn[ expando ] = true;
-	return fn;
-}
-
-/**
- * Support testing using an element
- * @param {Function} fn Passed the created element and returns a boolean result
- */
-function assert( fn ) {
-	var el = document.createElement( "fieldset" );
-
-	try {
-		return !!fn( el );
-	} catch ( e ) {
-		return false;
-	} finally {
-
-		// Remove from its parent by default
-		if ( el.parentNode ) {
-			el.parentNode.removeChild( el );
-		}
-
-		// release memory in IE
-		el = null;
-	}
-}
-
-/**
- * Adds the same handler for all of the specified attrs
- * @param {String} attrs Pipe-separated list of attributes
- * @param {Function} handler The method that will be applied
- */
-function addHandle( attrs, handler ) {
-	var arr = attrs.split( "|" ),
-		i = arr.length;
-
-	while ( i-- ) {
-		Expr.attrHandle[ arr[ i ] ] = handler;
-	}
-}
-
-/**
- * Checks document order of two siblings
- * @param {Element} a
- * @param {Element} b
- * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b
- */
-function siblingCheck( a, b ) {
-	var cur = b && a,
-		diff = cur && a.nodeType === 1 && b.nodeType === 1 &&
-			a.sourceIndex - b.sourceIndex;
-
-	// Use IE sourceIndex if available on both nodes
-	if ( diff ) {
-		return diff;
-	}
-
-	// Check if b follows a
-	if ( cur ) {
-		while ( ( cur = cur.nextSibling ) ) {
-			if ( cur === b ) {
-				return -1;
-			}
-		}
-	}
-
-	return a ? 1 : -1;
-}
-
-/**
- * Returns a function to use in pseudos for input types
- * @param {String} type
- */
-function createInputPseudo( type ) {
-	return function( elem ) {
-		var name = elem.nodeName.toLowerCase();
-		return name === "input" && elem.type === type;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for buttons
- * @param {String} type
- */
-function createButtonPseudo( type ) {
-	return function( elem ) {
-		var name = elem.nodeName.toLowerCase();
-		return ( name === "input" || name === "button" ) && elem.type === type;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for :enabled/:disabled
- * @param {Boolean} disabled true for :disabled; false for :enabled
- */
-function createDisabledPseudo( disabled ) {
-
-	// Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable
-	return function( elem ) {
-
-		// Only certain elements can match :enabled or :disabled
-		// https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled
-		// https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled
-		if ( "form" in elem ) {
-
-			// Check for inherited disabledness on relevant non-disabled elements:
-			// * listed form-associated elements in a disabled fieldset
-			//   https://html.spec.whatwg.org/multipage/forms.html#category-listed
-			//   https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled
-			// * option elements in a disabled optgroup
-			//   https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled
-			// All such elements have a "form" property.
-			if ( elem.parentNode && elem.disabled === false ) {
-
-				// Option elements defer to a parent optgroup if present
-				if ( "label" in elem ) {
-					if ( "label" in elem.parentNode ) {
-						return elem.parentNode.disabled === disabled;
-					} else {
-						return elem.disabled === disabled;
-					}
-				}
-
-				// Support: IE 6 - 11
-				// Use the isDisabled shortcut property to check for disabled fieldset ancestors
-				return elem.isDisabled === disabled ||
-
-					// Where there is no isDisabled, check manually
-					/* jshint -W018 */
-					elem.isDisabled !== !disabled &&
-					inDisabledFieldset( elem ) === disabled;
-			}
-
-			return elem.disabled === disabled;
-
-		// Try to winnow out elements that can't be disabled before trusting the disabled property.
-		// Some victims get caught in our net (label, legend, menu, track), but it shouldn't
-		// even exist on them, let alone have a boolean value.
-		} else if ( "label" in elem ) {
-			return elem.disabled === disabled;
-		}
-
-		// Remaining elements are neither :enabled nor :disabled
-		return false;
-	};
-}
-
-/**
- * Returns a function to use in pseudos for positionals
- * @param {Function} fn
- */
-function createPositionalPseudo( fn ) {
-	return markFunction( function( argument ) {
-		argument = +argument;
-		return markFunction( function( seed, matches ) {
-			var j,
-				matchIndexes = fn( [], seed.length, argument ),
-				i = matchIndexes.length;
-
-			// Match elements found at the specified indexes
-			while ( i-- ) {
-				if ( seed[ ( j = matchIndexes[ i ] ) ] ) {
-					seed[ j ] = !( matches[ j ] = seed[ j ] );
-				}
-			}
-		} );
-	} );
-}
-
-/**
- * Checks a node for validity as a Sizzle context
- * @param {Element|Object=} context
- * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value
- */
-function testContext( context ) {
-	return context && typeof context.getElementsByTagName !== "undefined" && context;
-}
-
-// Expose support vars for convenience
-support = Sizzle.support = {};
-
-/**
- * Detects XML nodes
- * @param {Element|Object} elem An element or a document
- * @returns {Boolean} True iff elem is a non-HTML XML node
- */
-isXML = Sizzle.isXML = function( elem ) {
-	var namespace = elem.namespaceURI,
-		docElem = ( elem.ownerDocument || elem ).documentElement;
-
-	// Support: IE <=8
-	// Assume HTML when documentElement doesn't yet exist, such as inside loading iframes
-	// https://bugs.jquery.com/ticket/4833
-	return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" );
-};
-
-/**
- * Sets document-related variables once based on the current document
- * @param {Element|Object} [doc] An element or document object to use to set the document
- * @returns {Object} Returns the current document
- */
-setDocument = Sizzle.setDocument = function( node ) {
-	var hasCompare, subWindow,
-		doc = node ? node.ownerDocument || node : preferredDoc;
-
-	// Return early if doc is invalid or already selected
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( doc == document || doc.nodeType !== 9 || !doc.documentElement ) {
-		return document;
-	}
-
-	// Update global variables
-	document = doc;
-	docElem = document.documentElement;
-	documentIsHTML = !isXML( document );
-
-	// Support: IE 9 - 11+, Edge 12 - 18+
-	// Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936)
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( preferredDoc != document &&
-		( subWindow = document.defaultView ) && subWindow.top !== subWindow ) {
-
-		// Support: IE 11, Edge
-		if ( subWindow.addEventListener ) {
-			subWindow.addEventListener( "unload", unloadHandler, false );
-
-		// Support: IE 9 - 10 only
-		} else if ( subWindow.attachEvent ) {
-			subWindow.attachEvent( "onunload", unloadHandler );
-		}
-	}
-
-	// Support: IE 8 - 11+, Edge 12 - 18+, Chrome <=16 - 25 only, Firefox <=3.6 - 31 only,
-	// Safari 4 - 5 only, Opera <=11.6 - 12.x only
-	// IE/Edge & older browsers don't support the :scope pseudo-class.
-	// Support: Safari 6.0 only
-	// Safari 6.0 supports :scope but it's an alias of :root there.
-	support.scope = assert( function( el ) {
-		docElem.appendChild( el ).appendChild( document.createElement( "div" ) );
-		return typeof el.querySelectorAll !== "undefined" &&
-			!el.querySelectorAll( ":scope fieldset div" ).length;
-	} );
-
-	/* Attributes
-	---------------------------------------------------------------------- */
-
-	// Support: IE<8
-	// Verify that getAttribute really returns attributes and not properties
-	// (excepting IE8 booleans)
-	support.attributes = assert( function( el ) {
-		el.className = "i";
-		return !el.getAttribute( "className" );
-	} );
-
-	/* getElement(s)By*
-	---------------------------------------------------------------------- */
-
-	// Check if getElementsByTagName("*") returns only elements
-	support.getElementsByTagName = assert( function( el ) {
-		el.appendChild( document.createComment( "" ) );
-		return !el.getElementsByTagName( "*" ).length;
-	} );
-
-	// Support: IE<9
-	support.getElementsByClassName = rnative.test( document.getElementsByClassName );
-
-	// Support: IE<10
-	// Check if getElementById returns elements by name
-	// The broken getElementById methods don't pick up programmatically-set names,
-	// so use a roundabout getElementsByName test
-	support.getById = assert( function( el ) {
-		docElem.appendChild( el ).id = expando;
-		return !document.getElementsByName || !document.getElementsByName( expando ).length;
-	} );
-
-	// ID filter and find
-	if ( support.getById ) {
-		Expr.filter[ "ID" ] = function( id ) {
-			var attrId = id.replace( runescape, funescape );
-			return function( elem ) {
-				return elem.getAttribute( "id" ) === attrId;
-			};
-		};
-		Expr.find[ "ID" ] = function( id, context ) {
-			if ( typeof context.getElementById !== "undefined" && documentIsHTML ) {
-				var elem = context.getElementById( id );
-				return elem ? [ elem ] : [];
-			}
-		};
-	} else {
-		Expr.filter[ "ID" ] =  function( id ) {
-			var attrId = id.replace( runescape, funescape );
-			return function( elem ) {
-				var node = typeof elem.getAttributeNode !== "undefined" &&
-					elem.getAttributeNode( "id" );
-				return node && node.value === attrId;
-			};
-		};
-
-		// Support: IE 6 - 7 only
-		// getElementById is not reliable as a find shortcut
-		Expr.find[ "ID" ] = function( id, context ) {
-			if ( typeof context.getElementById !== "undefined" && documentIsHTML ) {
-				var node, i, elems,
-					elem = context.getElementById( id );
-
-				if ( elem ) {
-
-					// Verify the id attribute
-					node = elem.getAttributeNode( "id" );
-					if ( node && node.value === id ) {
-						return [ elem ];
-					}
-
-					// Fall back on getElementsByName
-					elems = context.getElementsByName( id );
-					i = 0;
-					while ( ( elem = elems[ i++ ] ) ) {
-						node = elem.getAttributeNode( "id" );
-						if ( node && node.value === id ) {
-							return [ elem ];
-						}
-					}
-				}
-
-				return [];
-			}
-		};
-	}
-
-	// Tag
-	Expr.find[ "TAG" ] = support.getElementsByTagName ?
-		function( tag, context ) {
-			if ( typeof context.getElementsByTagName !== "undefined" ) {
-				return context.getElementsByTagName( tag );
-
-			// DocumentFragment nodes don't have gEBTN
-			} else if ( support.qsa ) {
-				return context.querySelectorAll( tag );
-			}
-		} :
-
-		function( tag, context ) {
-			var elem,
-				tmp = [],
-				i = 0,
-
-				// By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too
-				results = context.getElementsByTagName( tag );
-
-			// Filter out possible comments
-			if ( tag === "*" ) {
-				while ( ( elem = results[ i++ ] ) ) {
-					if ( elem.nodeType === 1 ) {
-						tmp.push( elem );
-					}
-				}
-
-				return tmp;
-			}
-			return results;
-		};
-
-	// Class
-	Expr.find[ "CLASS" ] = support.getElementsByClassName && function( className, context ) {
-		if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) {
-			return context.getElementsByClassName( className );
-		}
-	};
-
-	/* QSA/matchesSelector
-	---------------------------------------------------------------------- */
-
-	// QSA and matchesSelector support
-
-	// matchesSelector(:active) reports false when true (IE9/Opera 11.5)
-	rbuggyMatches = [];
-
-	// qSa(:focus) reports false when true (Chrome 21)
-	// We allow this because of a bug in IE8/9 that throws an error
-	// whenever `document.activeElement` is accessed on an iframe
-	// So, we allow :focus to pass through QSA all the time to avoid the IE error
-	// See https://bugs.jquery.com/ticket/13378
-	rbuggyQSA = [];
-
-	if ( ( support.qsa = rnative.test( document.querySelectorAll ) ) ) {
-
-		// Build QSA regex
-		// Regex strategy adopted from Diego Perini
-		assert( function( el ) {
-
-			var input;
-
-			// Select is set to empty string on purpose
-			// This is to test IE's treatment of not explicitly
-			// setting a boolean content attribute,
-			// since its presence should be enough
-			// https://bugs.jquery.com/ticket/12359
-			docElem.appendChild( el ).innerHTML = "<a id='" + expando + "'></a>" +
-				"<select id='" + expando + "-\r\\' msallowcapture=''>" +
-				"<option selected=''></option></select>";
-
-			// Support: IE8, Opera 11-12.16
-			// Nothing should be selected when empty strings follow ^= or $= or *=
-			// The test attribute must be unknown in Opera but "safe" for WinRT
-			// https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section
-			if ( el.querySelectorAll( "[msallowcapture^='']" ).length ) {
-				rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" );
-			}
-
-			// Support: IE8
-			// Boolean attributes and "value" are not treated correctly
-			if ( !el.querySelectorAll( "[selected]" ).length ) {
-				rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" );
-			}
-
-			// Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+
-			if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) {
-				rbuggyQSA.push( "~=" );
-			}
-
-			// Support: IE 11+, Edge 15 - 18+
-			// IE 11/Edge don't find elements on a `[name='']` query in some cases.
-			// Adding a temporary attribute to the document before the selection works
-			// around the issue.
-			// Interestingly, IE 10 & older don't seem to have the issue.
-			input = document.createElement( "input" );
-			input.setAttribute( "name", "" );
-			el.appendChild( input );
-			if ( !el.querySelectorAll( "[name='']" ).length ) {
-				rbuggyQSA.push( "\\[" + whitespace + "*name" + whitespace + "*=" +
-					whitespace + "*(?:''|\"\")" );
-			}
-
-			// Webkit/Opera - :checked should return selected option elements
-			// http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked
-			// IE8 throws error here and will not see later tests
-			if ( !el.querySelectorAll( ":checked" ).length ) {
-				rbuggyQSA.push( ":checked" );
-			}
-
-			// Support: Safari 8+, iOS 8+
-			// https://bugs.webkit.org/show_bug.cgi?id=136851
-			// In-page `selector#id sibling-combinator selector` fails
-			if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) {
-				rbuggyQSA.push( ".#.+[+~]" );
-			}
-
-			// Support: Firefox <=3.6 - 5 only
-			// Old Firefox doesn't throw on a badly-escaped identifier.
-			el.querySelectorAll( "\\\f" );
-			rbuggyQSA.push( "[\\r\\n\\f]" );
-		} );
-
-		assert( function( el ) {
-			el.innerHTML = "<a href='' disabled='disabled'></a>" +
-				"<select disabled='disabled'><option/></select>";
-
-			// Support: Windows 8 Native Apps
-			// The type and name attributes are restricted during .innerHTML assignment
-			var input = document.createElement( "input" );
-			input.setAttribute( "type", "hidden" );
-			el.appendChild( input ).setAttribute( "name", "D" );
-
-			// Support: IE8
-			// Enforce case-sensitivity of name attribute
-			if ( el.querySelectorAll( "[name=d]" ).length ) {
-				rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" );
-			}
-
-			// FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled)
-			// IE8 throws error here and will not see later tests
-			if ( el.querySelectorAll( ":enabled" ).length !== 2 ) {
-				rbuggyQSA.push( ":enabled", ":disabled" );
-			}
-
-			// Support: IE9-11+
-			// IE's :disabled selector does not pick up the children of disabled fieldsets
-			docElem.appendChild( el ).disabled = true;
-			if ( el.querySelectorAll( ":disabled" ).length !== 2 ) {
-				rbuggyQSA.push( ":enabled", ":disabled" );
-			}
-
-			// Support: Opera 10 - 11 only
-			// Opera 10-11 does not throw on post-comma invalid pseudos
-			el.querySelectorAll( "*,:x" );
-			rbuggyQSA.push( ",.*:" );
-		} );
-	}
-
-	if ( ( support.matchesSelector = rnative.test( ( matches = docElem.matches ||
-		docElem.webkitMatchesSelector ||
-		docElem.mozMatchesSelector ||
-		docElem.oMatchesSelector ||
-		docElem.msMatchesSelector ) ) ) ) {
-
-		assert( function( el ) {
-
-			// Check to see if it's possible to do matchesSelector
-			// on a disconnected node (IE 9)
-			support.disconnectedMatch = matches.call( el, "*" );
-
-			// This should fail with an exception
-			// Gecko does not error, returns false instead
-			matches.call( el, "[s!='']:x" );
-			rbuggyMatches.push( "!=", pseudos );
-		} );
-	}
-
-	rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join( "|" ) );
-	rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join( "|" ) );
-
-	/* Contains
-	---------------------------------------------------------------------- */
-	hasCompare = rnative.test( docElem.compareDocumentPosition );
-
-	// Element contains another
-	// Purposefully self-exclusive
-	// As in, an element does not contain itself
-	contains = hasCompare || rnative.test( docElem.contains ) ?
-		function( a, b ) {
-			var adown = a.nodeType === 9 ? a.documentElement : a,
-				bup = b && b.parentNode;
-			return a === bup || !!( bup && bup.nodeType === 1 && (
-				adown.contains ?
-					adown.contains( bup ) :
-					a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16
-			) );
-		} :
-		function( a, b ) {
-			if ( b ) {
-				while ( ( b = b.parentNode ) ) {
-					if ( b === a ) {
-						return true;
-					}
-				}
-			}
-			return false;
-		};
-
-	/* Sorting
-	---------------------------------------------------------------------- */
-
-	// Document order sorting
-	sortOrder = hasCompare ?
-	function( a, b ) {
-
-		// Flag for duplicate removal
-		if ( a === b ) {
-			hasDuplicate = true;
-			return 0;
-		}
-
-		// Sort on method existence if only one input has compareDocumentPosition
-		var compare = !a.compareDocumentPosition - !b.compareDocumentPosition;
-		if ( compare ) {
-			return compare;
-		}
-
-		// Calculate position if both inputs belong to the same document
-		// Support: IE 11+, Edge 17 - 18+
-		// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-		// two documents; shallow comparisons work.
-		// eslint-disable-next-line eqeqeq
-		compare = ( a.ownerDocument || a ) == ( b.ownerDocument || b ) ?
-			a.compareDocumentPosition( b ) :
-
-			// Otherwise we know they are disconnected
-			1;
-
-		// Disconnected nodes
-		if ( compare & 1 ||
-			( !support.sortDetached && b.compareDocumentPosition( a ) === compare ) ) {
-
-			// Choose the first element that is related to our preferred document
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			// eslint-disable-next-line eqeqeq
-			if ( a == document || a.ownerDocument == preferredDoc &&
-				contains( preferredDoc, a ) ) {
-				return -1;
-			}
-
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			// eslint-disable-next-line eqeqeq
-			if ( b == document || b.ownerDocument == preferredDoc &&
-				contains( preferredDoc, b ) ) {
-				return 1;
-			}
-
-			// Maintain original order
-			return sortInput ?
-				( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
-				0;
-		}
-
-		return compare & 4 ? -1 : 1;
-	} :
-	function( a, b ) {
-
-		// Exit early if the nodes are identical
-		if ( a === b ) {
-			hasDuplicate = true;
-			return 0;
-		}
-
-		var cur,
-			i = 0,
-			aup = a.parentNode,
-			bup = b.parentNode,
-			ap = [ a ],
-			bp = [ b ];
-
-		// Parentless nodes are either documents or disconnected
-		if ( !aup || !bup ) {
-
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			/* eslint-disable eqeqeq */
-			return a == document ? -1 :
-				b == document ? 1 :
-				/* eslint-enable eqeqeq */
-				aup ? -1 :
-				bup ? 1 :
-				sortInput ?
-				( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) :
-				0;
-
-		// If the nodes are siblings, we can do a quick check
-		} else if ( aup === bup ) {
-			return siblingCheck( a, b );
-		}
-
-		// Otherwise we need full lists of their ancestors for comparison
-		cur = a;
-		while ( ( cur = cur.parentNode ) ) {
-			ap.unshift( cur );
-		}
-		cur = b;
-		while ( ( cur = cur.parentNode ) ) {
-			bp.unshift( cur );
-		}
-
-		// Walk down the tree looking for a discrepancy
-		while ( ap[ i ] === bp[ i ] ) {
-			i++;
-		}
-
-		return i ?
-
-			// Do a sibling check if the nodes have a common ancestor
-			siblingCheck( ap[ i ], bp[ i ] ) :
-
-			// Otherwise nodes in our document sort first
-			// Support: IE 11+, Edge 17 - 18+
-			// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-			// two documents; shallow comparisons work.
-			/* eslint-disable eqeqeq */
-			ap[ i ] == preferredDoc ? -1 :
-			bp[ i ] == preferredDoc ? 1 :
-			/* eslint-enable eqeqeq */
-			0;
-	};
-
-	return document;
-};
-
-Sizzle.matches = function( expr, elements ) {
-	return Sizzle( expr, null, null, elements );
-};
-
-Sizzle.matchesSelector = function( elem, expr ) {
-	setDocument( elem );
-
-	if ( support.matchesSelector && documentIsHTML &&
-		!nonnativeSelectorCache[ expr + " " ] &&
-		( !rbuggyMatches || !rbuggyMatches.test( expr ) ) &&
-		( !rbuggyQSA     || !rbuggyQSA.test( expr ) ) ) {
-
-		try {
-			var ret = matches.call( elem, expr );
-
-			// IE 9's matchesSelector returns false on disconnected nodes
-			if ( ret || support.disconnectedMatch ||
-
-				// As well, disconnected nodes are said to be in a document
-				// fragment in IE 9
-				elem.document && elem.document.nodeType !== 11 ) {
-				return ret;
-			}
-		} catch ( e ) {
-			nonnativeSelectorCache( expr, true );
-		}
-	}
-
-	return Sizzle( expr, document, null, [ elem ] ).length > 0;
-};
-
-Sizzle.contains = function( context, elem ) {
-
-	// Set document vars if needed
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( ( context.ownerDocument || context ) != document ) {
-		setDocument( context );
-	}
-	return contains( context, elem );
-};
-
-Sizzle.attr = function( elem, name ) {
-
-	// Set document vars if needed
-	// Support: IE 11+, Edge 17 - 18+
-	// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-	// two documents; shallow comparisons work.
-	// eslint-disable-next-line eqeqeq
-	if ( ( elem.ownerDocument || elem ) != document ) {
-		setDocument( elem );
-	}
-
-	var fn = Expr.attrHandle[ name.toLowerCase() ],
-
-		// Don't get fooled by Object.prototype properties (jQuery #13807)
-		val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ?
-			fn( elem, name, !documentIsHTML ) :
-			undefined;
-
-	return val !== undefined ?
-		val :
-		support.attributes || !documentIsHTML ?
-			elem.getAttribute( name ) :
-			( val = elem.getAttributeNode( name ) ) && val.specified ?
-				val.value :
-				null;
-};
-
-Sizzle.escape = function( sel ) {
-	return ( sel + "" ).replace( rcssescape, fcssescape );
-};
-
-Sizzle.error = function( msg ) {
-	throw new Error( "Syntax error, unrecognized expression: " + msg );
-};
-
-/**
- * Document sorting and removing duplicates
- * @param {ArrayLike} results
- */
-Sizzle.uniqueSort = function( results ) {
-	var elem,
-		duplicates = [],
-		j = 0,
-		i = 0;
-
-	// Unless we *know* we can detect duplicates, assume their presence
-	hasDuplicate = !support.detectDuplicates;
-	sortInput = !support.sortStable && results.slice( 0 );
-	results.sort( sortOrder );
-
-	if ( hasDuplicate ) {
-		while ( ( elem = results[ i++ ] ) ) {
-			if ( elem === results[ i ] ) {
-				j = duplicates.push( i );
-			}
-		}
-		while ( j-- ) {
-			results.splice( duplicates[ j ], 1 );
-		}
-	}
-
-	// Clear input after sorting to release objects
-	// See https://github.com/jquery/sizzle/pull/225
-	sortInput = null;
-
-	return results;
-};
-
-/**
- * Utility function for retrieving the text value of an array of DOM nodes
- * @param {Array|Element} elem
- */
-getText = Sizzle.getText = function( elem ) {
-	var node,
-		ret = "",
-		i = 0,
-		nodeType = elem.nodeType;
-
-	if ( !nodeType ) {
-
-		// If no nodeType, this is expected to be an array
-		while ( ( node = elem[ i++ ] ) ) {
-
-			// Do not traverse comment nodes
-			ret += getText( node );
-		}
-	} else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) {
-
-		// Use textContent for elements
-		// innerText usage removed for consistency of new lines (jQuery #11153)
-		if ( typeof elem.textContent === "string" ) {
-			return elem.textContent;
-		} else {
-
-			// Traverse its children
-			for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) {
-				ret += getText( elem );
-			}
-		}
-	} else if ( nodeType === 3 || nodeType === 4 ) {
-		return elem.nodeValue;
-	}
-
-	// Do not include comment or processing instruction nodes
-
-	return ret;
-};
-
-Expr = Sizzle.selectors = {
-
-	// Can be adjusted by the user
-	cacheLength: 50,
-
-	createPseudo: markFunction,
-
-	match: matchExpr,
-
-	attrHandle: {},
-
-	find: {},
-
-	relative: {
-		">": { dir: "parentNode", first: true },
-		" ": { dir: "parentNode" },
-		"+": { dir: "previousSibling", first: true },
-		"~": { dir: "previousSibling" }
-	},
-
-	preFilter: {
-		"ATTR": function( match ) {
-			match[ 1 ] = match[ 1 ].replace( runescape, funescape );
-
-			// Move the given value to match[3] whether quoted or unquoted
-			match[ 3 ] = ( match[ 3 ] || match[ 4 ] ||
-				match[ 5 ] || "" ).replace( runescape, funescape );
-
-			if ( match[ 2 ] === "~=" ) {
-				match[ 3 ] = " " + match[ 3 ] + " ";
-			}
-
-			return match.slice( 0, 4 );
-		},
-
-		"CHILD": function( match ) {
-
-			/* matches from matchExpr["CHILD"]
-				1 type (only|nth|...)
-				2 what (child|of-type)
-				3 argument (even|odd|\d*|\d*n([+-]\d+)?|...)
-				4 xn-component of xn+y argument ([+-]?\d*n|)
-				5 sign of xn-component
-				6 x of xn-component
-				7 sign of y-component
-				8 y of y-component
-			*/
-			match[ 1 ] = match[ 1 ].toLowerCase();
-
-			if ( match[ 1 ].slice( 0, 3 ) === "nth" ) {
-
-				// nth-* requires argument
-				if ( !match[ 3 ] ) {
-					Sizzle.error( match[ 0 ] );
-				}
-
-				// numeric x and y parameters for Expr.filter.CHILD
-				// remember that false/true cast respectively to 0/1
-				match[ 4 ] = +( match[ 4 ] ?
-					match[ 5 ] + ( match[ 6 ] || 1 ) :
-					2 * ( match[ 3 ] === "even" || match[ 3 ] === "odd" ) );
-				match[ 5 ] = +( ( match[ 7 ] + match[ 8 ] ) || match[ 3 ] === "odd" );
-
-				// other types prohibit arguments
-			} else if ( match[ 3 ] ) {
-				Sizzle.error( match[ 0 ] );
-			}
-
-			return match;
-		},
-
-		"PSEUDO": function( match ) {
-			var excess,
-				unquoted = !match[ 6 ] && match[ 2 ];
-
-			if ( matchExpr[ "CHILD" ].test( match[ 0 ] ) ) {
-				return null;
-			}
-
-			// Accept quoted arguments as-is
-			if ( match[ 3 ] ) {
-				match[ 2 ] = match[ 4 ] || match[ 5 ] || "";
-
-			// Strip excess characters from unquoted arguments
-			} else if ( unquoted && rpseudo.test( unquoted ) &&
-
-				// Get excess from tokenize (recursively)
-				( excess = tokenize( unquoted, true ) ) &&
-
-				// advance to the next closing parenthesis
-				( excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length ) ) {
-
-				// excess is a negative index
-				match[ 0 ] = match[ 0 ].slice( 0, excess );
-				match[ 2 ] = unquoted.slice( 0, excess );
-			}
-
-			// Return only captures needed by the pseudo filter method (type and argument)
-			return match.slice( 0, 3 );
-		}
-	},
-
-	filter: {
-
-		"TAG": function( nodeNameSelector ) {
-			var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase();
-			return nodeNameSelector === "*" ?
-				function() {
-					return true;
-				} :
-				function( elem ) {
-					return elem.nodeName && elem.nodeName.toLowerCase() === nodeName;
-				};
-		},
-
-		"CLASS": function( className ) {
-			var pattern = classCache[ className + " " ];
-
-			return pattern ||
-				( pattern = new RegExp( "(^|" + whitespace +
-					")" + className + "(" + whitespace + "|$)" ) ) && classCache(
-						className, function( elem ) {
-							return pattern.test(
-								typeof elem.className === "string" && elem.className ||
-								typeof elem.getAttribute !== "undefined" &&
-									elem.getAttribute( "class" ) ||
-								""
-							);
-				} );
-		},
-
-		"ATTR": function( name, operator, check ) {
-			return function( elem ) {
-				var result = Sizzle.attr( elem, name );
-
-				if ( result == null ) {
-					return operator === "!=";
-				}
-				if ( !operator ) {
-					return true;
-				}
-
-				result += "";
-
-				/* eslint-disable max-len */
-
-				return operator === "=" ? result === check :
-					operator === "!=" ? result !== check :
-					operator === "^=" ? check && result.indexOf( check ) === 0 :
-					operator === "*=" ? check && result.indexOf( check ) > -1 :
-					operator === "$=" ? check && result.slice( -check.length ) === check :
-					operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 :
-					operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" :
-					false;
-				/* eslint-enable max-len */
-
-			};
-		},
-
-		"CHILD": function( type, what, _argument, first, last ) {
-			var simple = type.slice( 0, 3 ) !== "nth",
-				forward = type.slice( -4 ) !== "last",
-				ofType = what === "of-type";
-
-			return first === 1 && last === 0 ?
-
-				// Shortcut for :nth-*(n)
-				function( elem ) {
-					return !!elem.parentNode;
-				} :
-
-				function( elem, _context, xml ) {
-					var cache, uniqueCache, outerCache, node, nodeIndex, start,
-						dir = simple !== forward ? "nextSibling" : "previousSibling",
-						parent = elem.parentNode,
-						name = ofType && elem.nodeName.toLowerCase(),
-						useCache = !xml && !ofType,
-						diff = false;
-
-					if ( parent ) {
-
-						// :(first|last|only)-(child|of-type)
-						if ( simple ) {
-							while ( dir ) {
-								node = elem;
-								while ( ( node = node[ dir ] ) ) {
-									if ( ofType ?
-										node.nodeName.toLowerCase() === name :
-										node.nodeType === 1 ) {
-
-										return false;
-									}
-								}
-
-								// Reverse direction for :only-* (if we haven't yet done so)
-								start = dir = type === "only" && !start && "nextSibling";
-							}
-							return true;
-						}
-
-						start = [ forward ? parent.firstChild : parent.lastChild ];
-
-						// non-xml :nth-child(...) stores cache data on `parent`
-						if ( forward && useCache ) {
-
-							// Seek `elem` from a previously-cached index
-
-							// ...in a gzip-friendly way
-							node = parent;
-							outerCache = node[ expando ] || ( node[ expando ] = {} );
-
-							// Support: IE <9 only
-							// Defend against cloned attroperties (jQuery gh-1709)
-							uniqueCache = outerCache[ node.uniqueID ] ||
-								( outerCache[ node.uniqueID ] = {} );
-
-							cache = uniqueCache[ type ] || [];
-							nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ];
-							diff = nodeIndex && cache[ 2 ];
-							node = nodeIndex && parent.childNodes[ nodeIndex ];
-
-							while ( ( node = ++nodeIndex && node && node[ dir ] ||
-
-								// Fallback to seeking `elem` from the start
-								( diff = nodeIndex = 0 ) || start.pop() ) ) {
-
-								// When found, cache indexes on `parent` and break
-								if ( node.nodeType === 1 && ++diff && node === elem ) {
-									uniqueCache[ type ] = [ dirruns, nodeIndex, diff ];
-									break;
-								}
-							}
-
-						} else {
-
-							// Use previously-cached element index if available
-							if ( useCache ) {
-
-								// ...in a gzip-friendly way
-								node = elem;
-								outerCache = node[ expando ] || ( node[ expando ] = {} );
-
-								// Support: IE <9 only
-								// Defend against cloned attroperties (jQuery gh-1709)
-								uniqueCache = outerCache[ node.uniqueID ] ||
-									( outerCache[ node.uniqueID ] = {} );
-
-								cache = uniqueCache[ type ] || [];
-								nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ];
-								diff = nodeIndex;
-							}
-
-							// xml :nth-child(...)
-							// or :nth-last-child(...) or :nth(-last)?-of-type(...)
-							if ( diff === false ) {
-
-								// Use the same loop as above to seek `elem` from the start
-								while ( ( node = ++nodeIndex && node && node[ dir ] ||
-									( diff = nodeIndex = 0 ) || start.pop() ) ) {
-
-									if ( ( ofType ?
-										node.nodeName.toLowerCase() === name :
-										node.nodeType === 1 ) &&
-										++diff ) {
-
-										// Cache the index of each encountered element
-										if ( useCache ) {
-											outerCache = node[ expando ] ||
-												( node[ expando ] = {} );
-
-											// Support: IE <9 only
-											// Defend against cloned attroperties (jQuery gh-1709)
-											uniqueCache = outerCache[ node.uniqueID ] ||
-												( outerCache[ node.uniqueID ] = {} );
-
-											uniqueCache[ type ] = [ dirruns, diff ];
-										}
-
-										if ( node === elem ) {
-											break;
-										}
-									}
-								}
-							}
-						}
-
-						// Incorporate the offset, then check against cycle size
-						diff -= last;
-						return diff === first || ( diff % first === 0 && diff / first >= 0 );
-					}
-				};
-		},
-
-		"PSEUDO": function( pseudo, argument ) {
-
-			// pseudo-class names are case-insensitive
-			// http://www.w3.org/TR/selectors/#pseudo-classes
-			// Prioritize by case sensitivity in case custom pseudos are added with uppercase letters
-			// Remember that setFilters inherits from pseudos
-			var args,
-				fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] ||
-					Sizzle.error( "unsupported pseudo: " + pseudo );
-
-			// The user may use createPseudo to indicate that
-			// arguments are needed to create the filter function
-			// just as Sizzle does
-			if ( fn[ expando ] ) {
-				return fn( argument );
-			}
-
-			// But maintain support for old signatures
-			if ( fn.length > 1 ) {
-				args = [ pseudo, pseudo, "", argument ];
-				return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ?
-					markFunction( function( seed, matches ) {
-						var idx,
-							matched = fn( seed, argument ),
-							i = matched.length;
-						while ( i-- ) {
-							idx = indexOf( seed, matched[ i ] );
-							seed[ idx ] = !( matches[ idx ] = matched[ i ] );
-						}
-					} ) :
-					function( elem ) {
-						return fn( elem, 0, args );
-					};
-			}
-
-			return fn;
-		}
-	},
-
-	pseudos: {
-
-		// Potentially complex pseudos
-		"not": markFunction( function( selector ) {
-
-			// Trim the selector passed to compile
-			// to avoid treating leading and trailing
-			// spaces as combinators
-			var input = [],
-				results = [],
-				matcher = compile( selector.replace( rtrim, "$1" ) );
-
-			return matcher[ expando ] ?
-				markFunction( function( seed, matches, _context, xml ) {
-					var elem,
-						unmatched = matcher( seed, null, xml, [] ),
-						i = seed.length;
-
-					// Match elements unmatched by `matcher`
-					while ( i-- ) {
-						if ( ( elem = unmatched[ i ] ) ) {
-							seed[ i ] = !( matches[ i ] = elem );
-						}
-					}
-				} ) :
-				function( elem, _context, xml ) {
-					input[ 0 ] = elem;
-					matcher( input, null, xml, results );
-
-					// Don't keep the element (issue #299)
-					input[ 0 ] = null;
-					return !results.pop();
-				};
-		} ),
-
-		"has": markFunction( function( selector ) {
-			return function( elem ) {
-				return Sizzle( selector, elem ).length > 0;
-			};
-		} ),
-
-		"contains": markFunction( function( text ) {
-			text = text.replace( runescape, funescape );
-			return function( elem ) {
-				return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1;
-			};
-		} ),
-
-		// "Whether an element is represented by a :lang() selector
-		// is based solely on the element's language value
-		// being equal to the identifier C,
-		// or beginning with the identifier C immediately followed by "-".
-		// The matching of C against the element's language value is performed case-insensitively.
-		// The identifier C does not have to be a valid language name."
-		// http://www.w3.org/TR/selectors/#lang-pseudo
-		"lang": markFunction( function( lang ) {
-
-			// lang value must be a valid identifier
-			if ( !ridentifier.test( lang || "" ) ) {
-				Sizzle.error( "unsupported lang: " + lang );
-			}
-			lang = lang.replace( runescape, funescape ).toLowerCase();
-			return function( elem ) {
-				var elemLang;
-				do {
-					if ( ( elemLang = documentIsHTML ?
-						elem.lang :
-						elem.getAttribute( "xml:lang" ) || elem.getAttribute( "lang" ) ) ) {
-
-						elemLang = elemLang.toLowerCase();
-						return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0;
-					}
-				} while ( ( elem = elem.parentNode ) && elem.nodeType === 1 );
-				return false;
-			};
-		} ),
-
-		// Miscellaneous
-		"target": function( elem ) {
-			var hash = window.location && window.location.hash;
-			return hash && hash.slice( 1 ) === elem.id;
-		},
-
-		"root": function( elem ) {
-			return elem === docElem;
-		},
-
-		"focus": function( elem ) {
-			return elem === document.activeElement &&
-				( !document.hasFocus || document.hasFocus() ) &&
-				!!( elem.type || elem.href || ~elem.tabIndex );
-		},
-
-		// Boolean properties
-		"enabled": createDisabledPseudo( false ),
-		"disabled": createDisabledPseudo( true ),
-
-		"checked": function( elem ) {
-
-			// In CSS3, :checked should return both checked and selected elements
-			// http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked
-			var nodeName = elem.nodeName.toLowerCase();
-			return ( nodeName === "input" && !!elem.checked ) ||
-				( nodeName === "option" && !!elem.selected );
-		},
-
-		"selected": function( elem ) {
-
-			// Accessing this property makes selected-by-default
-			// options in Safari work properly
-			if ( elem.parentNode ) {
-				// eslint-disable-next-line no-unused-expressions
-				elem.parentNode.selectedIndex;
-			}
-
-			return elem.selected === true;
-		},
-
-		// Contents
-		"empty": function( elem ) {
-
-			// http://www.w3.org/TR/selectors/#empty-pseudo
-			// :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5),
-			//   but not by others (comment: 8; processing instruction: 7; etc.)
-			// nodeType < 6 works because attributes (2) do not appear as children
-			for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) {
-				if ( elem.nodeType < 6 ) {
-					return false;
-				}
-			}
-			return true;
-		},
-
-		"parent": function( elem ) {
-			return !Expr.pseudos[ "empty" ]( elem );
-		},
-
-		// Element/input types
-		"header": function( elem ) {
-			return rheader.test( elem.nodeName );
-		},
-
-		"input": function( elem ) {
-			return rinputs.test( elem.nodeName );
-		},
-
-		"button": function( elem ) {
-			var name = elem.nodeName.toLowerCase();
-			return name === "input" && elem.type === "button" || name === "button";
-		},
-
-		"text": function( elem ) {
-			var attr;
-			return elem.nodeName.toLowerCase() === "input" &&
-				elem.type === "text" &&
-
-				// Support: IE<8
-				// New HTML5 attribute values (e.g., "search") appear with elem.type === "text"
-				( ( attr = elem.getAttribute( "type" ) ) == null ||
-					attr.toLowerCase() === "text" );
-		},
-
-		// Position-in-collection
-		"first": createPositionalPseudo( function() {
-			return [ 0 ];
-		} ),
-
-		"last": createPositionalPseudo( function( _matchIndexes, length ) {
-			return [ length - 1 ];
-		} ),
-
-		"eq": createPositionalPseudo( function( _matchIndexes, length, argument ) {
-			return [ argument < 0 ? argument + length : argument ];
-		} ),
-
-		"even": createPositionalPseudo( function( matchIndexes, length ) {
-			var i = 0;
-			for ( ; i < length; i += 2 ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"odd": createPositionalPseudo( function( matchIndexes, length ) {
-			var i = 1;
-			for ( ; i < length; i += 2 ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"lt": createPositionalPseudo( function( matchIndexes, length, argument ) {
-			var i = argument < 0 ?
-				argument + length :
-				argument > length ?
-					length :
-					argument;
-			for ( ; --i >= 0; ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} ),
-
-		"gt": createPositionalPseudo( function( matchIndexes, length, argument ) {
-			var i = argument < 0 ? argument + length : argument;
-			for ( ; ++i < length; ) {
-				matchIndexes.push( i );
-			}
-			return matchIndexes;
-		} )
-	}
-};
-
-Expr.pseudos[ "nth" ] = Expr.pseudos[ "eq" ];
-
-// Add button/input type pseudos
-for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) {
-	Expr.pseudos[ i ] = createInputPseudo( i );
-}
-for ( i in { submit: true, reset: true } ) {
-	Expr.pseudos[ i ] = createButtonPseudo( i );
-}
-
-// Easy API for creating new setFilters
-function setFilters() {}
-setFilters.prototype = Expr.filters = Expr.pseudos;
-Expr.setFilters = new setFilters();
-
-tokenize = Sizzle.tokenize = function( selector, parseOnly ) {
-	var matched, match, tokens, type,
-		soFar, groups, preFilters,
-		cached = tokenCache[ selector + " " ];
-
-	if ( cached ) {
-		return parseOnly ? 0 : cached.slice( 0 );
-	}
-
-	soFar = selector;
-	groups = [];
-	preFilters = Expr.preFilter;
-
-	while ( soFar ) {
-
-		// Comma and first run
-		if ( !matched || ( match = rcomma.exec( soFar ) ) ) {
-			if ( match ) {
-
-				// Don't consume trailing commas as valid
-				soFar = soFar.slice( match[ 0 ].length ) || soFar;
-			}
-			groups.push( ( tokens = [] ) );
-		}
-
-		matched = false;
-
-		// Combinators
-		if ( ( match = rcombinators.exec( soFar ) ) ) {
-			matched = match.shift();
-			tokens.push( {
-				value: matched,
-
-				// Cast descendant combinators to space
-				type: match[ 0 ].replace( rtrim, " " )
-			} );
-			soFar = soFar.slice( matched.length );
-		}
-
-		// Filters
-		for ( type in Expr.filter ) {
-			if ( ( match = matchExpr[ type ].exec( soFar ) ) && ( !preFilters[ type ] ||
-				( match = preFilters[ type ]( match ) ) ) ) {
-				matched = match.shift();
-				tokens.push( {
-					value: matched,
-					type: type,
-					matches: match
-				} );
-				soFar = soFar.slice( matched.length );
-			}
-		}
-
-		if ( !matched ) {
-			break;
-		}
-	}
-
-	// Return the length of the invalid excess
-	// if we're just parsing
-	// Otherwise, throw an error or return tokens
-	return parseOnly ?
-		soFar.length :
-		soFar ?
-			Sizzle.error( selector ) :
-
-			// Cache the tokens
-			tokenCache( selector, groups ).slice( 0 );
-};
-
-function toSelector( tokens ) {
-	var i = 0,
-		len = tokens.length,
-		selector = "";
-	for ( ; i < len; i++ ) {
-		selector += tokens[ i ].value;
-	}
-	return selector;
-}
-
-function addCombinator( matcher, combinator, base ) {
-	var dir = combinator.dir,
-		skip = combinator.next,
-		key = skip || dir,
-		checkNonElements = base && key === "parentNode",
-		doneName = done++;
-
-	return combinator.first ?
-
-		// Check against closest ancestor/preceding element
-		function( elem, context, xml ) {
-			while ( ( elem = elem[ dir ] ) ) {
-				if ( elem.nodeType === 1 || checkNonElements ) {
-					return matcher( elem, context, xml );
-				}
-			}
-			return false;
-		} :
-
-		// Check against all ancestor/preceding elements
-		function( elem, context, xml ) {
-			var oldCache, uniqueCache, outerCache,
-				newCache = [ dirruns, doneName ];
-
-			// We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching
-			if ( xml ) {
-				while ( ( elem = elem[ dir ] ) ) {
-					if ( elem.nodeType === 1 || checkNonElements ) {
-						if ( matcher( elem, context, xml ) ) {
-							return true;
-						}
-					}
-				}
-			} else {
-				while ( ( elem = elem[ dir ] ) ) {
-					if ( elem.nodeType === 1 || checkNonElements ) {
-						outerCache = elem[ expando ] || ( elem[ expando ] = {} );
-
-						// Support: IE <9 only
-						// Defend against cloned attroperties (jQuery gh-1709)
-						uniqueCache = outerCache[ elem.uniqueID ] ||
-							( outerCache[ elem.uniqueID ] = {} );
-
-						if ( skip && skip === elem.nodeName.toLowerCase() ) {
-							elem = elem[ dir ] || elem;
-						} else if ( ( oldCache = uniqueCache[ key ] ) &&
-							oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) {
-
-							// Assign to newCache so results back-propagate to previous elements
-							return ( newCache[ 2 ] = oldCache[ 2 ] );
-						} else {
-
-							// Reuse newcache so results back-propagate to previous elements
-							uniqueCache[ key ] = newCache;
-
-							// A match means we're done; a fail means we have to keep checking
-							if ( ( newCache[ 2 ] = matcher( elem, context, xml ) ) ) {
-								return true;
-							}
-						}
-					}
-				}
-			}
-			return false;
-		};
-}
-
-function elementMatcher( matchers ) {
-	return matchers.length > 1 ?
-		function( elem, context, xml ) {
-			var i = matchers.length;
-			while ( i-- ) {
-				if ( !matchers[ i ]( elem, context, xml ) ) {
-					return false;
-				}
-			}
-			return true;
-		} :
-		matchers[ 0 ];
-}
-
-function multipleContexts( selector, contexts, results ) {
-	var i = 0,
-		len = contexts.length;
-	for ( ; i < len; i++ ) {
-		Sizzle( selector, contexts[ i ], results );
-	}
-	return results;
-}
-
-function condense( unmatched, map, filter, context, xml ) {
-	var elem,
-		newUnmatched = [],
-		i = 0,
-		len = unmatched.length,
-		mapped = map != null;
-
-	for ( ; i < len; i++ ) {
-		if ( ( elem = unmatched[ i ] ) ) {
-			if ( !filter || filter( elem, context, xml ) ) {
-				newUnmatched.push( elem );
-				if ( mapped ) {
-					map.push( i );
-				}
-			}
-		}
-	}
-
-	return newUnmatched;
-}
-
-function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) {
-	if ( postFilter && !postFilter[ expando ] ) {
-		postFilter = setMatcher( postFilter );
-	}
-	if ( postFinder && !postFinder[ expando ] ) {
-		postFinder = setMatcher( postFinder, postSelector );
-	}
-	return markFunction( function( seed, results, context, xml ) {
-		var temp, i, elem,
-			preMap = [],
-			postMap = [],
-			preexisting = results.length,
-
-			// Get initial elements from seed or context
-			elems = seed || multipleContexts(
-				selector || "*",
-				context.nodeType ? [ context ] : context,
-				[]
-			),
-
-			// Prefilter to get matcher input, preserving a map for seed-results synchronization
-			matcherIn = preFilter && ( seed || !selector ) ?
-				condense( elems, preMap, preFilter, context, xml ) :
-				elems,
-
-			matcherOut = matcher ?
-
-				// If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results,
-				postFinder || ( seed ? preFilter : preexisting || postFilter ) ?
-
-					// ...intermediate processing is necessary
-					[] :
-
-					// ...otherwise use results directly
-					results :
-				matcherIn;
-
-		// Find primary matches
-		if ( matcher ) {
-			matcher( matcherIn, matcherOut, context, xml );
-		}
-
-		// Apply postFilter
-		if ( postFilter ) {
-			temp = condense( matcherOut, postMap );
-			postFilter( temp, [], context, xml );
-
-			// Un-match failing elements by moving them back to matcherIn
-			i = temp.length;
-			while ( i-- ) {
-				if ( ( elem = temp[ i ] ) ) {
-					matcherOut[ postMap[ i ] ] = !( matcherIn[ postMap[ i ] ] = elem );
-				}
-			}
-		}
-
-		if ( seed ) {
-			if ( postFinder || preFilter ) {
-				if ( postFinder ) {
-
-					// Get the final matcherOut by condensing this intermediate into postFinder contexts
-					temp = [];
-					i = matcherOut.length;
-					while ( i-- ) {
-						if ( ( elem = matcherOut[ i ] ) ) {
-
-							// Restore matcherIn since elem is not yet a final match
-							temp.push( ( matcherIn[ i ] = elem ) );
-						}
-					}
-					postFinder( null, ( matcherOut = [] ), temp, xml );
-				}
-
-				// Move matched elements from seed to results to keep them synchronized
-				i = matcherOut.length;
-				while ( i-- ) {
-					if ( ( elem = matcherOut[ i ] ) &&
-						( temp = postFinder ? indexOf( seed, elem ) : preMap[ i ] ) > -1 ) {
-
-						seed[ temp ] = !( results[ temp ] = elem );
-					}
-				}
-			}
-
-		// Add elements to results, through postFinder if defined
-		} else {
-			matcherOut = condense(
-				matcherOut === results ?
-					matcherOut.splice( preexisting, matcherOut.length ) :
-					matcherOut
-			);
-			if ( postFinder ) {
-				postFinder( null, results, matcherOut, xml );
-			} else {
-				push.apply( results, matcherOut );
-			}
-		}
-	} );
-}
-
-function matcherFromTokens( tokens ) {
-	var checkContext, matcher, j,
-		len = tokens.length,
-		leadingRelative = Expr.relative[ tokens[ 0 ].type ],
-		implicitRelative = leadingRelative || Expr.relative[ " " ],
-		i = leadingRelative ? 1 : 0,
-
-		// The foundational matcher ensures that elements are reachable from top-level context(s)
-		matchContext = addCombinator( function( elem ) {
-			return elem === checkContext;
-		}, implicitRelative, true ),
-		matchAnyContext = addCombinator( function( elem ) {
-			return indexOf( checkContext, elem ) > -1;
-		}, implicitRelative, true ),
-		matchers = [ function( elem, context, xml ) {
-			var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || (
-				( checkContext = context ).nodeType ?
-					matchContext( elem, context, xml ) :
-					matchAnyContext( elem, context, xml ) );
-
-			// Avoid hanging onto element (issue #299)
-			checkContext = null;
-			return ret;
-		} ];
-
-	for ( ; i < len; i++ ) {
-		if ( ( matcher = Expr.relative[ tokens[ i ].type ] ) ) {
-			matchers = [ addCombinator( elementMatcher( matchers ), matcher ) ];
-		} else {
-			matcher = Expr.filter[ tokens[ i ].type ].apply( null, tokens[ i ].matches );
-
-			// Return special upon seeing a positional matcher
-			if ( matcher[ expando ] ) {
-
-				// Find the next relative operator (if any) for proper handling
-				j = ++i;
-				for ( ; j < len; j++ ) {
-					if ( Expr.relative[ tokens[ j ].type ] ) {
-						break;
-					}
-				}
-				return setMatcher(
-					i > 1 && elementMatcher( matchers ),
-					i > 1 && toSelector(
-
-					// If the preceding token was a descendant combinator, insert an implicit any-element `*`
-					tokens
-						.slice( 0, i - 1 )
-						.concat( { value: tokens[ i - 2 ].type === " " ? "*" : "" } )
-					).replace( rtrim, "$1" ),
-					matcher,
-					i < j && matcherFromTokens( tokens.slice( i, j ) ),
-					j < len && matcherFromTokens( ( tokens = tokens.slice( j ) ) ),
-					j < len && toSelector( tokens )
-				);
-			}
-			matchers.push( matcher );
-		}
-	}
-
-	return elementMatcher( matchers );
-}
-
-function matcherFromGroupMatchers( elementMatchers, setMatchers ) {
-	var bySet = setMatchers.length > 0,
-		byElement = elementMatchers.length > 0,
-		superMatcher = function( seed, context, xml, results, outermost ) {
-			var elem, j, matcher,
-				matchedCount = 0,
-				i = "0",
-				unmatched = seed && [],
-				setMatched = [],
-				contextBackup = outermostContext,
-
-				// We must always have either seed elements or outermost context
-				elems = seed || byElement && Expr.find[ "TAG" ]( "*", outermost ),
-
-				// Use integer dirruns iff this is the outermost matcher
-				dirrunsUnique = ( dirruns += contextBackup == null ? 1 : Math.random() || 0.1 ),
-				len = elems.length;
-
-			if ( outermost ) {
-
-				// Support: IE 11+, Edge 17 - 18+
-				// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-				// two documents; shallow comparisons work.
-				// eslint-disable-next-line eqeqeq
-				outermostContext = context == document || context || outermost;
-			}
-
-			// Add elements passing elementMatchers directly to results
-			// Support: IE<9, Safari
-			// Tolerate NodeList properties (IE: "length"; Safari: <number>) matching elements by id
-			for ( ; i !== len && ( elem = elems[ i ] ) != null; i++ ) {
-				if ( byElement && elem ) {
-					j = 0;
-
-					// Support: IE 11+, Edge 17 - 18+
-					// IE/Edge sometimes throw a "Permission denied" error when strict-comparing
-					// two documents; shallow comparisons work.
-					// eslint-disable-next-line eqeqeq
-					if ( !context && elem.ownerDocument != document ) {
-						setDocument( elem );
-						xml = !documentIsHTML;
-					}
-					while ( ( matcher = elementMatchers[ j++ ] ) ) {
-						if ( matcher( elem, context || document, xml ) ) {
-							results.push( elem );
-							break;
-						}
-					}
-					if ( outermost ) {
-						dirruns = dirrunsUnique;
-					}
-				}
-
-				// Track unmatched elements for set filters
-				if ( bySet ) {
-
-					// They will have gone through all possible matchers
-					if ( ( elem = !matcher && elem ) ) {
-						matchedCount--;
-					}
-
-					// Lengthen the array for every element, matched or not
-					if ( seed ) {
-						unmatched.push( elem );
-					}
-				}
-			}
-
-			// `i` is now the count of elements visited above, and adding it to `matchedCount`
-			// makes the latter nonnegative.
-			matchedCount += i;
-
-			// Apply set filters to unmatched elements
-			// NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount`
-			// equals `i`), unless we didn't visit _any_ elements in the above loop because we have
-			// no element matchers and no seed.
-			// Incrementing an initially-string "0" `i` allows `i` to remain a string only in that
-			// case, which will result in a "00" `matchedCount` that differs from `i` but is also
-			// numerically zero.
-			if ( bySet && i !== matchedCount ) {
-				j = 0;
-				while ( ( matcher = setMatchers[ j++ ] ) ) {
-					matcher( unmatched, setMatched, context, xml );
-				}
-
-				if ( seed ) {
-
-					// Reintegrate element matches to eliminate the need for sorting
-					if ( matchedCount > 0 ) {
-						while ( i-- ) {
-							if ( !( unmatched[ i ] || setMatched[ i ] ) ) {
-								setMatched[ i ] = pop.call( results );
-							}
-						}
-					}
-
-					// Discard index placeholder values to get only actual matches
-					setMatched = condense( setMatched );
-				}
-
-				// Add matches to results
-				push.apply( results, setMatched );
-
-				// Seedless set matches succeeding multiple successful matchers stipulate sorting
-				if ( outermost && !seed && setMatched.length > 0 &&
-					( matchedCount + setMatchers.length ) > 1 ) {
-
-					Sizzle.uniqueSort( results );
-				}
-			}
-
-			// Override manipulation of globals by nested matchers
-			if ( outermost ) {
-				dirruns = dirrunsUnique;
-				outermostContext = contextBackup;
-			}
-
-			return unmatched;
-		};
-
-	return bySet ?
-		markFunction( superMatcher ) :
-		superMatcher;
-}
-
-compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) {
-	var i,
-		setMatchers = [],
-		elementMatchers = [],
-		cached = compilerCache[ selector + " " ];
-
-	if ( !cached ) {
-
-		// Generate a function of recursive functions that can be used to check each element
-		if ( !match ) {
-			match = tokenize( selector );
-		}
-		i = match.length;
-		while ( i-- ) {
-			cached = matcherFromTokens( match[ i ] );
-			if ( cached[ expando ] ) {
-				setMatchers.push( cached );
-			} else {
-				elementMatchers.push( cached );
-			}
-		}
-
-		// Cache the compiled function
-		cached = compilerCache(
-			selector,
-			matcherFromGroupMatchers( elementMatchers, setMatchers )
-		);
-
-		// Save selector and tokenization
-		cached.selector = selector;
-	}
-	return cached;
-};
-
-/**
- * A low-level selection function that works with Sizzle's compiled
- *  selector functions
- * @param {String|Function} selector A selector or a pre-compiled
- *  selector function built with Sizzle.compile
- * @param {Element} context
- * @param {Array} [results]
- * @param {Array} [seed] A set of elements to match against
- */
-select = Sizzle.select = function( selector, context, results, seed ) {
-	var i, tokens, token, type, find,
-		compiled = typeof selector === "function" && selector,
-		match = !seed && tokenize( ( selector = compiled.selector || selector ) );
-
-	results = results || [];
-
-	// Try to minimize operations if there is only one selector in the list and no seed
-	// (the latter of which guarantees us context)
-	if ( match.length === 1 ) {
-
-		// Reduce context if the leading compound selector is an ID
-		tokens = match[ 0 ] = match[ 0 ].slice( 0 );
-		if ( tokens.length > 2 && ( token = tokens[ 0 ] ).type === "ID" &&
-			context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[ 1 ].type ] ) {
-
-			context = ( Expr.find[ "ID" ]( token.matches[ 0 ]
-				.replace( runescape, funescape ), context ) || [] )[ 0 ];
-			if ( !context ) {
-				return results;
-
-			// Precompiled matchers will still verify ancestry, so step up a level
-			} else if ( compiled ) {
-				context = context.parentNode;
-			}
-
-			selector = selector.slice( tokens.shift().value.length );
-		}
-
-		// Fetch a seed set for right-to-left matching
-		i = matchExpr[ "needsContext" ].test( selector ) ? 0 : tokens.length;
-		while ( i-- ) {
-			token = tokens[ i ];
-
-			// Abort if we hit a combinator
-			if ( Expr.relative[ ( type = token.type ) ] ) {
-				break;
-			}
-			if ( ( find = Expr.find[ type ] ) ) {
-
-				// Search, expanding context for leading sibling combinators
-				if ( ( seed = find(
-					token.matches[ 0 ].replace( runescape, funescape ),
-					rsibling.test( tokens[ 0 ].type ) && testContext( context.parentNode ) ||
-						context
-				) ) ) {
-
-					// If seed is empty or no tokens remain, we can return early
-					tokens.splice( i, 1 );
-					selector = seed.length && toSelector( tokens );
-					if ( !selector ) {
-						push.apply( results, seed );
-						return results;
-					}
-
-					break;
-				}
-			}
-		}
-	}
-
-	// Compile and execute a filtering function if one is not provided
-	// Provide `match` to avoid retokenization if we modified the selector above
-	( compiled || compile( selector, match ) )(
-		seed,
-		context,
-		!documentIsHTML,
-		results,
-		!context || rsibling.test( selector ) && testContext( context.parentNode ) || context
-	);
-	return results;
-};
-
-// One-time assignments
-
-// Sort stability
-support.sortStable = expando.split( "" ).sort( sortOrder ).join( "" ) === expando;
-
-// Support: Chrome 14-35+
-// Always assume duplicates if they aren't passed to the comparison function
-support.detectDuplicates = !!hasDuplicate;
-
-// Initialize against the default document
-setDocument();
-
-// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27)
-// Detached nodes confoundingly follow *each other*
-support.sortDetached = assert( function( el ) {
-
-	// Should return 1, but returns 4 (following)
-	return el.compareDocumentPosition( document.createElement( "fieldset" ) ) & 1;
-} );
-
-// Support: IE<8
-// Prevent attribute/property "interpolation"
-// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx
-if ( !assert( function( el ) {
-	el.innerHTML = "<a href='#'></a>";
-	return el.firstChild.getAttribute( "href" ) === "#";
-} ) ) {
-	addHandle( "type|href|height|width", function( elem, name, isXML ) {
-		if ( !isXML ) {
-			return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 );
-		}
-	} );
-}
-
-// Support: IE<9
-// Use defaultValue in place of getAttribute("value")
-if ( !support.attributes || !assert( function( el ) {
-	el.innerHTML = "<input/>";
-	el.firstChild.setAttribute( "value", "" );
-	return el.firstChild.getAttribute( "value" ) === "";
-} ) ) {
-	addHandle( "value", function( elem, _name, isXML ) {
-		if ( !isXML && elem.nodeName.toLowerCase() === "input" ) {
-			return elem.defaultValue;
-		}
-	} );
-}
-
-// Support: IE<9
-// Use getAttributeNode to fetch booleans when getAttribute lies
-if ( !assert( function( el ) {
-	return el.getAttribute( "disabled" ) == null;
-} ) ) {
-	addHandle( booleans, function( elem, name, isXML ) {
-		var val;
-		if ( !isXML ) {
-			return elem[ name ] === true ? name.toLowerCase() :
-				( val = elem.getAttributeNode( name ) ) && val.specified ?
-					val.value :
-					null;
-		}
-	} );
-}
-
-return Sizzle;
-
-} )( window );
-
-
-
-jQuery.find = Sizzle;
-jQuery.expr = Sizzle.selectors;
-
-// Deprecated
-jQuery.expr[ ":" ] = jQuery.expr.pseudos;
-jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort;
-jQuery.text = Sizzle.getText;
-jQuery.isXMLDoc = Sizzle.isXML;
-jQuery.contains = Sizzle.contains;
-jQuery.escapeSelector = Sizzle.escape;
-
-
-
-
-var dir = function( elem, dir, until ) {
-	var matched = [],
-		truncate = until !== undefined;
-
-	while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) {
-		if ( elem.nodeType === 1 ) {
-			if ( truncate && jQuery( elem ).is( until ) ) {
-				break;
-			}
-			matched.push( elem );
-		}
-	}
-	return matched;
-};
-
-
-var siblings = function( n, elem ) {
-	var matched = [];
-
-	for ( ; n; n = n.nextSibling ) {
-		if ( n.nodeType === 1 && n !== elem ) {
-			matched.push( n );
-		}
-	}
-
-	return matched;
-};
-
-
-var rneedsContext = jQuery.expr.match.needsContext;
-
-
-
-function nodeName( elem, name ) {
-
-  return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase();
-
-};
-var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i );
-
-
-
-// Implement the identical functionality for filter and not
-function winnow( elements, qualifier, not ) {
-	if ( isFunction( qualifier ) ) {
-		return jQuery.grep( elements, function( elem, i ) {
-			return !!qualifier.call( elem, i, elem ) !== not;
-		} );
-	}
-
-	// Single element
-	if ( qualifier.nodeType ) {
-		return jQuery.grep( elements, function( elem ) {
-			return ( elem === qualifier ) !== not;
-		} );
-	}
-
-	// Arraylike of elements (jQuery, arguments, Array)
-	if ( typeof qualifier !== "string" ) {
-		return jQuery.grep( elements, function( elem ) {
-			return ( indexOf.call( qualifier, elem ) > -1 ) !== not;
-		} );
-	}
-
-	// Filtered directly for both simple and complex selectors
-	return jQuery.filter( qualifier, elements, not );
-}
-
-jQuery.filter = function( expr, elems, not ) {
-	var elem = elems[ 0 ];
-
-	if ( not ) {
-		expr = ":not(" + expr + ")";
-	}
-
-	if ( elems.length === 1 && elem.nodeType === 1 ) {
-		return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : [];
-	}
-
-	return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) {
-		return elem.nodeType === 1;
-	} ) );
-};
-
-jQuery.fn.extend( {
-	find: function( selector ) {
-		var i, ret,
-			len = this.length,
-			self = this;
-
-		if ( typeof selector !== "string" ) {
-			return this.pushStack( jQuery( selector ).filter( function() {
-				for ( i = 0; i < len; i++ ) {
-					if ( jQuery.contains( self[ i ], this ) ) {
-						return true;
-					}
-				}
-			} ) );
-		}
-
-		ret = this.pushStack( [] );
-
-		for ( i = 0; i < len; i++ ) {
-			jQuery.find( selector, self[ i ], ret );
-		}
-
-		return len > 1 ? jQuery.uniqueSort( ret ) : ret;
-	},
-	filter: function( selector ) {
-		return this.pushStack( winnow( this, selector || [], false ) );
-	},
-	not: function( selector ) {
-		return this.pushStack( winnow( this, selector || [], true ) );
-	},
-	is: function( selector ) {
-		return !!winnow(
-			this,
-
-			// If this is a positional/relative selector, check membership in the returned set
-			// so $("p:first").is("p:last") won't return true for a doc with two "p".
-			typeof selector === "string" && rneedsContext.test( selector ) ?
-				jQuery( selector ) :
-				selector || [],
-			false
-		).length;
-	}
-} );
-
-
-// Initialize a jQuery object
-
-
-// A central reference to the root jQuery(document)
-var rootjQuery,
-
-	// A simple way to check for HTML strings
-	// Prioritize #id over <tag> to avoid XSS via location.hash (#9521)
-	// Strict HTML recognition (#11290: must start with <)
-	// Shortcut simple #id case for speed
-	rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/,
-
-	init = jQuery.fn.init = function( selector, context, root ) {
-		var match, elem;
-
-		// HANDLE: $(""), $(null), $(undefined), $(false)
-		if ( !selector ) {
-			return this;
-		}
-
-		// Method init() accepts an alternate rootjQuery
-		// so migrate can support jQuery.sub (gh-2101)
-		root = root || rootjQuery;
-
-		// Handle HTML strings
-		if ( typeof selector === "string" ) {
-			if ( selector[ 0 ] === "<" &&
-				selector[ selector.length - 1 ] === ">" &&
-				selector.length >= 3 ) {
-
-				// Assume that strings that start and end with <> are HTML and skip the regex check
-				match = [ null, selector, null ];
-
-			} else {
-				match = rquickExpr.exec( selector );
-			}
-
-			// Match html or make sure no context is specified for #id
-			if ( match && ( match[ 1 ] || !context ) ) {
-
-				// HANDLE: $(html) -> $(array)
-				if ( match[ 1 ] ) {
-					context = context instanceof jQuery ? context[ 0 ] : context;
-
-					// Option to run scripts is true for back-compat
-					// Intentionally let the error be thrown if parseHTML is not present
-					jQuery.merge( this, jQuery.parseHTML(
-						match[ 1 ],
-						context && context.nodeType ? context.ownerDocument || context : document,
-						true
-					) );
-
-					// HANDLE: $(html, props)
-					if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) {
-						for ( match in context ) {
-
-							// Properties of context are called as methods if possible
-							if ( isFunction( this[ match ] ) ) {
-								this[ match ]( context[ match ] );
-
-							// ...and otherwise set as attributes
-							} else {
-								this.attr( match, context[ match ] );
-							}
-						}
-					}
-
-					return this;
-
-				// HANDLE: $(#id)
-				} else {
-					elem = document.getElementById( match[ 2 ] );
-
-					if ( elem ) {
-
-						// Inject the element directly into the jQuery object
-						this[ 0 ] = elem;
-						this.length = 1;
-					}
-					return this;
-				}
-
-			// HANDLE: $(expr, $(...))
-			} else if ( !context || context.jquery ) {
-				return ( context || root ).find( selector );
-
-			// HANDLE: $(expr, context)
-			// (which is just equivalent to: $(context).find(expr)
-			} else {
-				return this.constructor( context ).find( selector );
-			}
-
-		// HANDLE: $(DOMElement)
-		} else if ( selector.nodeType ) {
-			this[ 0 ] = selector;
-			this.length = 1;
-			return this;
-
-		// HANDLE: $(function)
-		// Shortcut for document ready
-		} else if ( isFunction( selector ) ) {
-			return root.ready !== undefined ?
-				root.ready( selector ) :
-
-				// Execute immediately if ready is not present
-				selector( jQuery );
-		}
-
-		return jQuery.makeArray( selector, this );
-	};
-
-// Give the init function the jQuery prototype for later instantiation
-init.prototype = jQuery.fn;
-
-// Initialize central reference
-rootjQuery = jQuery( document );
-
-
-var rparentsprev = /^(?:parents|prev(?:Until|All))/,
-
-	// Methods guaranteed to produce a unique set when starting from a unique set
-	guaranteedUnique = {
-		children: true,
-		contents: true,
-		next: true,
-		prev: true
-	};
-
-jQuery.fn.extend( {
-	has: function( target ) {
-		var targets = jQuery( target, this ),
-			l = targets.length;
-
-		return this.filter( function() {
-			var i = 0;
-			for ( ; i < l; i++ ) {
-				if ( jQuery.contains( this, targets[ i ] ) ) {
-					return true;
-				}
-			}
-		} );
-	},
-
-	closest: function( selectors, context ) {
-		var cur,
-			i = 0,
-			l = this.length,
-			matched = [],
-			targets = typeof selectors !== "string" && jQuery( selectors );
-
-		// Positional selectors never match, since there's no _selection_ context
-		if ( !rneedsContext.test( selectors ) ) {
-			for ( ; i < l; i++ ) {
-				for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) {
-
-					// Always skip document fragments
-					if ( cur.nodeType < 11 && ( targets ?
-						targets.index( cur ) > -1 :
-
-						// Don't pass non-elements to Sizzle
-						cur.nodeType === 1 &&
-							jQuery.find.matchesSelector( cur, selectors ) ) ) {
-
-						matched.push( cur );
-						break;
-					}
-				}
-			}
-		}
-
-		return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched );
-	},
-
-	// Determine the position of an element within the set
-	index: function( elem ) {
-
-		// No argument, return index in parent
-		if ( !elem ) {
-			return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1;
-		}
-
-		// Index in selector
-		if ( typeof elem === "string" ) {
-			return indexOf.call( jQuery( elem ), this[ 0 ] );
-		}
-
-		// Locate the position of the desired element
-		return indexOf.call( this,
-
-			// If it receives a jQuery object, the first element is used
-			elem.jquery ? elem[ 0 ] : elem
-		);
-	},
-
-	add: function( selector, context ) {
-		return this.pushStack(
-			jQuery.uniqueSort(
-				jQuery.merge( this.get(), jQuery( selector, context ) )
-			)
-		);
-	},
-
-	addBack: function( selector ) {
-		return this.add( selector == null ?
-			this.prevObject : this.prevObject.filter( selector )
-		);
-	}
-} );
-
-function sibling( cur, dir ) {
-	while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {}
-	return cur;
-}
-
-jQuery.each( {
-	parent: function( elem ) {
-		var parent = elem.parentNode;
-		return parent && parent.nodeType !== 11 ? parent : null;
-	},
-	parents: function( elem ) {
-		return dir( elem, "parentNode" );
-	},
-	parentsUntil: function( elem, _i, until ) {
-		return dir( elem, "parentNode", until );
-	},
-	next: function( elem ) {
-		return sibling( elem, "nextSibling" );
-	},
-	prev: function( elem ) {
-		return sibling( elem, "previousSibling" );
-	},
-	nextAll: function( elem ) {
-		return dir( elem, "nextSibling" );
-	},
-	prevAll: function( elem ) {
-		return dir( elem, "previousSibling" );
-	},
-	nextUntil: function( elem, _i, until ) {
-		return dir( elem, "nextSibling", until );
-	},
-	prevUntil: function( elem, _i, until ) {
-		return dir( elem, "previousSibling", until );
-	},
-	siblings: function( elem ) {
-		return siblings( ( elem.parentNode || {} ).firstChild, elem );
-	},
-	children: function( elem ) {
-		return siblings( elem.firstChild );
-	},
-	contents: function( elem ) {
-		if ( elem.contentDocument != null &&
-
-			// Support: IE 11+
-			// <object> elements with no `data` attribute has an object
-			// `contentDocument` with a `null` prototype.
-			getProto( elem.contentDocument ) ) {
-
-			return elem.contentDocument;
-		}
-
-		// Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only
-		// Treat the template element as a regular one in browsers that
-		// don't support it.
-		if ( nodeName( elem, "template" ) ) {
-			elem = elem.content || elem;
-		}
-
-		return jQuery.merge( [], elem.childNodes );
-	}
-}, function( name, fn ) {
-	jQuery.fn[ name ] = function( until, selector ) {
-		var matched = jQuery.map( this, fn, until );
-
-		if ( name.slice( -5 ) !== "Until" ) {
-			selector = until;
-		}
-
-		if ( selector && typeof selector === "string" ) {
-			matched = jQuery.filter( selector, matched );
-		}
-
-		if ( this.length > 1 ) {
-
-			// Remove duplicates
-			if ( !guaranteedUnique[ name ] ) {
-				jQuery.uniqueSort( matched );
-			}
-
-			// Reverse order for parents* and prev-derivatives
-			if ( rparentsprev.test( name ) ) {
-				matched.reverse();
-			}
-		}
-
-		return this.pushStack( matched );
-	};
-} );
-var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g );
-
-
-
-// Convert String-formatted options into Object-formatted ones
-function createOptions( options ) {
-	var object = {};
-	jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) {
-		object[ flag ] = true;
-	} );
-	return object;
-}
-
-/*
- * Create a callback list using the following parameters:
- *
- *	options: an optional list of space-separated options that will change how
- *			the callback list behaves or a more traditional option object
- *
- * By default a callback list will act like an event callback list and can be
- * "fired" multiple times.
- *
- * Possible options:
- *
- *	once:			will ensure the callback list can only be fired once (like a Deferred)
- *
- *	memory:			will keep track of previous values and will call any callback added
- *					after the list has been fired right away with the latest "memorized"
- *					values (like a Deferred)
- *
- *	unique:			will ensure a callback can only be added once (no duplicate in the list)
- *
- *	stopOnFalse:	interrupt callings when a callback returns false
- *
- */
-jQuery.Callbacks = function( options ) {
-
-	// Convert options from String-formatted to Object-formatted if needed
-	// (we check in cache first)
-	options = typeof options === "string" ?
-		createOptions( options ) :
-		jQuery.extend( {}, options );
-
-	var // Flag to know if list is currently firing
-		firing,
-
-		// Last fire value for non-forgettable lists
-		memory,
-
-		// Flag to know if list was already fired
-		fired,
-
-		// Flag to prevent firing
-		locked,
-
-		// Actual callback list
-		list = [],
-
-		// Queue of execution data for repeatable lists
-		queue = [],
-
-		// Index of currently firing callback (modified by add/remove as needed)
-		firingIndex = -1,
-
-		// Fire callbacks
-		fire = function() {
-
-			// Enforce single-firing
-			locked = locked || options.once;
-
-			// Execute callbacks for all pending executions,
-			// respecting firingIndex overrides and runtime changes
-			fired = firing = true;
-			for ( ; queue.length; firingIndex = -1 ) {
-				memory = queue.shift();
-				while ( ++firingIndex < list.length ) {
-
-					// Run callback and check for early termination
-					if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false &&
-						options.stopOnFalse ) {
-
-						// Jump to end and forget the data so .add doesn't re-fire
-						firingIndex = list.length;
-						memory = false;
-					}
-				}
-			}
-
-			// Forget the data if we're done with it
-			if ( !options.memory ) {
-				memory = false;
-			}
-
-			firing = false;
-
-			// Clean up if we're done firing for good
-			if ( locked ) {
-
-				// Keep an empty list if we have data for future add calls
-				if ( memory ) {
-					list = [];
-
-				// Otherwise, this object is spent
-				} else {
-					list = "";
-				}
-			}
-		},
-
-		// Actual Callbacks object
-		self = {
-
-			// Add a callback or a collection of callbacks to the list
-			add: function() {
-				if ( list ) {
-
-					// If we have memory from a past run, we should fire after adding
-					if ( memory && !firing ) {
-						firingIndex = list.length - 1;
-						queue.push( memory );
-					}
-
-					( function add( args ) {
-						jQuery.each( args, function( _, arg ) {
-							if ( isFunction( arg ) ) {
-								if ( !options.unique || !self.has( arg ) ) {
-									list.push( arg );
-								}
-							} else if ( arg && arg.length && toType( arg ) !== "string" ) {
-
-								// Inspect recursively
-								add( arg );
-							}
-						} );
-					} )( arguments );
-
-					if ( memory && !firing ) {
-						fire();
-					}
-				}
-				return this;
-			},
-
-			// Remove a callback from the list
-			remove: function() {
-				jQuery.each( arguments, function( _, arg ) {
-					var index;
-					while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) {
-						list.splice( index, 1 );
-
-						// Handle firing indexes
-						if ( index <= firingIndex ) {
-							firingIndex--;
-						}
-					}
-				} );
-				return this;
-			},
-
-			// Check if a given callback is in the list.
-			// If no argument is given, return whether or not list has callbacks attached.
-			has: function( fn ) {
-				return fn ?
-					jQuery.inArray( fn, list ) > -1 :
-					list.length > 0;
-			},
-
-			// Remove all callbacks from the list
-			empty: function() {
-				if ( list ) {
-					list = [];
-				}
-				return this;
-			},
-
-			// Disable .fire and .add
-			// Abort any current/pending executions
-			// Clear all callbacks and values
-			disable: function() {
-				locked = queue = [];
-				list = memory = "";
-				return this;
-			},
-			disabled: function() {
-				return !list;
-			},
-
-			// Disable .fire
-			// Also disable .add unless we have memory (since it would have no effect)
-			// Abort any pending executions
-			lock: function() {
-				locked = queue = [];
-				if ( !memory && !firing ) {
-					list = memory = "";
-				}
-				return this;
-			},
-			locked: function() {
-				return !!locked;
-			},
-
-			// Call all callbacks with the given context and arguments
-			fireWith: function( context, args ) {
-				if ( !locked ) {
-					args = args || [];
-					args = [ context, args.slice ? args.slice() : args ];
-					queue.push( args );
-					if ( !firing ) {
-						fire();
-					}
-				}
-				return this;
-			},
-
-			// Call all the callbacks with the given arguments
-			fire: function() {
-				self.fireWith( this, arguments );
-				return this;
-			},
-
-			// To know if the callbacks have already been called at least once
-			fired: function() {
-				return !!fired;
-			}
-		};
-
-	return self;
-};
-
-
-function Identity( v ) {
-	return v;
-}
-function Thrower( ex ) {
-	throw ex;
-}
-
-function adoptValue( value, resolve, reject, noValue ) {
-	var method;
-
-	try {
-
-		// Check for promise aspect first to privilege synchronous behavior
-		if ( value && isFunction( ( method = value.promise ) ) ) {
-			method.call( value ).done( resolve ).fail( reject );
-
-		// Other thenables
-		} else if ( value && isFunction( ( method = value.then ) ) ) {
-			method.call( value, resolve, reject );
-
-		// Other non-thenables
-		} else {
-
-			// Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer:
-			// * false: [ value ].slice( 0 ) => resolve( value )
-			// * true: [ value ].slice( 1 ) => resolve()
-			resolve.apply( undefined, [ value ].slice( noValue ) );
-		}
-
-	// For Promises/A+, convert exceptions into rejections
-	// Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in
-	// Deferred#then to conditionally suppress rejection.
-	} catch ( value ) {
-
-		// Support: Android 4.0 only
-		// Strict mode functions invoked without .call/.apply get global-object context
-		reject.apply( undefined, [ value ] );
-	}
-}
-
-jQuery.extend( {
-
-	Deferred: function( func ) {
-		var tuples = [
-
-				// action, add listener, callbacks,
-				// ... .then handlers, argument index, [final state]
-				[ "notify", "progress", jQuery.Callbacks( "memory" ),
-					jQuery.Callbacks( "memory" ), 2 ],
-				[ "resolve", "done", jQuery.Callbacks( "once memory" ),
-					jQuery.Callbacks( "once memory" ), 0, "resolved" ],
-				[ "reject", "fail", jQuery.Callbacks( "once memory" ),
-					jQuery.Callbacks( "once memory" ), 1, "rejected" ]
-			],
-			state = "pending",
-			promise = {
-				state: function() {
-					return state;
-				},
-				always: function() {
-					deferred.done( arguments ).fail( arguments );
-					return this;
-				},
-				"catch": function( fn ) {
-					return promise.then( null, fn );
-				},
-
-				// Keep pipe for back-compat
-				pipe: function( /* fnDone, fnFail, fnProgress */ ) {
-					var fns = arguments;
-
-					return jQuery.Deferred( function( newDefer ) {
-						jQuery.each( tuples, function( _i, tuple ) {
-
-							// Map tuples (progress, done, fail) to arguments (done, fail, progress)
-							var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ];
-
-							// deferred.progress(function() { bind to newDefer or newDefer.notify })
-							// deferred.done(function() { bind to newDefer or newDefer.resolve })
-							// deferred.fail(function() { bind to newDefer or newDefer.reject })
-							deferred[ tuple[ 1 ] ]( function() {
-								var returned = fn && fn.apply( this, arguments );
-								if ( returned && isFunction( returned.promise ) ) {
-									returned.promise()
-										.progress( newDefer.notify )
-										.done( newDefer.resolve )
-										.fail( newDefer.reject );
-								} else {
-									newDefer[ tuple[ 0 ] + "With" ](
-										this,
-										fn ? [ returned ] : arguments
-									);
-								}
-							} );
-						} );
-						fns = null;
-					} ).promise();
-				},
-				then: function( onFulfilled, onRejected, onProgress ) {
-					var maxDepth = 0;
-					function resolve( depth, deferred, handler, special ) {
-						return function() {
-							var that = this,
-								args = arguments,
-								mightThrow = function() {
-									var returned, then;
-
-									// Support: Promises/A+ section 2.3.3.3.3
-									// https://promisesaplus.com/#point-59
-									// Ignore double-resolution attempts
-									if ( depth < maxDepth ) {
-										return;
-									}
-
-									returned = handler.apply( that, args );
-
-									// Support: Promises/A+ section 2.3.1
-									// https://promisesaplus.com/#point-48
-									if ( returned === deferred.promise() ) {
-										throw new TypeError( "Thenable self-resolution" );
-									}
-
-									// Support: Promises/A+ sections 2.3.3.1, 3.5
-									// https://promisesaplus.com/#point-54
-									// https://promisesaplus.com/#point-75
-									// Retrieve `then` only once
-									then = returned &&
-
-										// Support: Promises/A+ section 2.3.4
-										// https://promisesaplus.com/#point-64
-										// Only check objects and functions for thenability
-										( typeof returned === "object" ||
-											typeof returned === "function" ) &&
-										returned.then;
-
-									// Handle a returned thenable
-									if ( isFunction( then ) ) {
-
-										// Special processors (notify) just wait for resolution
-										if ( special ) {
-											then.call(
-												returned,
-												resolve( maxDepth, deferred, Identity, special ),
-												resolve( maxDepth, deferred, Thrower, special )
-											);
-
-										// Normal processors (resolve) also hook into progress
-										} else {
-
-											// ...and disregard older resolution values
-											maxDepth++;
-
-											then.call(
-												returned,
-												resolve( maxDepth, deferred, Identity, special ),
-												resolve( maxDepth, deferred, Thrower, special ),
-												resolve( maxDepth, deferred, Identity,
-													deferred.notifyWith )
-											);
-										}
-
-									// Handle all other returned values
-									} else {
-
-										// Only substitute handlers pass on context
-										// and multiple values (non-spec behavior)
-										if ( handler !== Identity ) {
-											that = undefined;
-											args = [ returned ];
-										}
-
-										// Process the value(s)
-										// Default process is resolve
-										( special || deferred.resolveWith )( that, args );
-									}
-								},
-
-								// Only normal processors (resolve) catch and reject exceptions
-								process = special ?
-									mightThrow :
-									function() {
-										try {
-											mightThrow();
-										} catch ( e ) {
-
-											if ( jQuery.Deferred.exceptionHook ) {
-												jQuery.Deferred.exceptionHook( e,
-													process.stackTrace );
-											}
-
-											// Support: Promises/A+ section 2.3.3.3.4.1
-											// https://promisesaplus.com/#point-61
-											// Ignore post-resolution exceptions
-											if ( depth + 1 >= maxDepth ) {
-
-												// Only substitute handlers pass on context
-												// and multiple values (non-spec behavior)
-												if ( handler !== Thrower ) {
-													that = undefined;
-													args = [ e ];
-												}
-
-												deferred.rejectWith( that, args );
-											}
-										}
-									};
-
-							// Support: Promises/A+ section 2.3.3.3.1
-							// https://promisesaplus.com/#point-57
-							// Re-resolve promises immediately to dodge false rejection from
-							// subsequent errors
-							if ( depth ) {
-								process();
-							} else {
-
-								// Call an optional hook to record the stack, in case of exception
-								// since it's otherwise lost when execution goes async
-								if ( jQuery.Deferred.getStackHook ) {
-									process.stackTrace = jQuery.Deferred.getStackHook();
-								}
-								window.setTimeout( process );
-							}
-						};
-					}
-
-					return jQuery.Deferred( function( newDefer ) {
-
-						// progress_handlers.add( ... )
-						tuples[ 0 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onProgress ) ?
-									onProgress :
-									Identity,
-								newDefer.notifyWith
-							)
-						);
-
-						// fulfilled_handlers.add( ... )
-						tuples[ 1 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onFulfilled ) ?
-									onFulfilled :
-									Identity
-							)
-						);
-
-						// rejected_handlers.add( ... )
-						tuples[ 2 ][ 3 ].add(
-							resolve(
-								0,
-								newDefer,
-								isFunction( onRejected ) ?
-									onRejected :
-									Thrower
-							)
-						);
-					} ).promise();
-				},
-
-				// Get a promise for this deferred
-				// If obj is provided, the promise aspect is added to the object
-				promise: function( obj ) {
-					return obj != null ? jQuery.extend( obj, promise ) : promise;
-				}
-			},
-			deferred = {};
-
-		// Add list-specific methods
-		jQuery.each( tuples, function( i, tuple ) {
-			var list = tuple[ 2 ],
-				stateString = tuple[ 5 ];
-
-			// promise.progress = list.add
-			// promise.done = list.add
-			// promise.fail = list.add
-			promise[ tuple[ 1 ] ] = list.add;
-
-			// Handle state
-			if ( stateString ) {
-				list.add(
-					function() {
-
-						// state = "resolved" (i.e., fulfilled)
-						// state = "rejected"
-						state = stateString;
-					},
-
-					// rejected_callbacks.disable
-					// fulfilled_callbacks.disable
-					tuples[ 3 - i ][ 2 ].disable,
-
-					// rejected_handlers.disable
-					// fulfilled_handlers.disable
-					tuples[ 3 - i ][ 3 ].disable,
-
-					// progress_callbacks.lock
-					tuples[ 0 ][ 2 ].lock,
-
-					// progress_handlers.lock
-					tuples[ 0 ][ 3 ].lock
-				);
-			}
-
-			// progress_handlers.fire
-			// fulfilled_handlers.fire
-			// rejected_handlers.fire
-			list.add( tuple[ 3 ].fire );
-
-			// deferred.notify = function() { deferred.notifyWith(...) }
-			// deferred.resolve = function() { deferred.resolveWith(...) }
-			// deferred.reject = function() { deferred.rejectWith(...) }
-			deferred[ tuple[ 0 ] ] = function() {
-				deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments );
-				return this;
-			};
-
-			// deferred.notifyWith = list.fireWith
-			// deferred.resolveWith = list.fireWith
-			// deferred.rejectWith = list.fireWith
-			deferred[ tuple[ 0 ] + "With" ] = list.fireWith;
-		} );
-
-		// Make the deferred a promise
-		promise.promise( deferred );
-
-		// Call given func if any
-		if ( func ) {
-			func.call( deferred, deferred );
-		}
-
-		// All done!
-		return deferred;
-	},
-
-	// Deferred helper
-	when: function( singleValue ) {
-		var
-
-			// count of uncompleted subordinates
-			remaining = arguments.length,
-
-			// count of unprocessed arguments
-			i = remaining,
-
-			// subordinate fulfillment data
-			resolveContexts = Array( i ),
-			resolveValues = slice.call( arguments ),
-
-			// the master Deferred
-			master = jQuery.Deferred(),
-
-			// subordinate callback factory
-			updateFunc = function( i ) {
-				return function( value ) {
-					resolveContexts[ i ] = this;
-					resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value;
-					if ( !( --remaining ) ) {
-						master.resolveWith( resolveContexts, resolveValues );
-					}
-				};
-			};
-
-		// Single- and empty arguments are adopted like Promise.resolve
-		if ( remaining <= 1 ) {
-			adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject,
-				!remaining );
-
-			// Use .then() to unwrap secondary thenables (cf. gh-3000)
-			if ( master.state() === "pending" ||
-				isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) {
-
-				return master.then();
-			}
-		}
-
-		// Multiple arguments are aggregated like Promise.all array elements
-		while ( i-- ) {
-			adoptValue( resolveValues[ i ], updateFunc( i ), master.reject );
-		}
-
-		return master.promise();
-	}
-} );
-
-
-// These usually indicate a programmer mistake during development,
-// warn about them ASAP rather than swallowing them by default.
-var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/;
-
-jQuery.Deferred.exceptionHook = function( error, stack ) {
-
-	// Support: IE 8 - 9 only
-	// Console exists when dev tools are open, which can happen at any time
-	if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) {
-		window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack );
-	}
-};
-
-
-
-
-jQuery.readyException = function( error ) {
-	window.setTimeout( function() {
-		throw error;
-	} );
-};
-
-
-
-
-// The deferred used on DOM ready
-var readyList = jQuery.Deferred();
-
-jQuery.fn.ready = function( fn ) {
-
-	readyList
-		.then( fn )
-
-		// Wrap jQuery.readyException in a function so that the lookup
-		// happens at the time of error handling instead of callback
-		// registration.
-		.catch( function( error ) {
-			jQuery.readyException( error );
-		} );
-
-	return this;
-};
-
-jQuery.extend( {
-
-	// Is the DOM ready to be used? Set to true once it occurs.
-	isReady: false,
-
-	// A counter to track how many items to wait for before
-	// the ready event fires. See #6781
-	readyWait: 1,
-
-	// Handle when the DOM is ready
-	ready: function( wait ) {
-
-		// Abort if there are pending holds or we're already ready
-		if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) {
-			return;
-		}
-
-		// Remember that the DOM is ready
-		jQuery.isReady = true;
-
-		// If a normal DOM Ready event fired, decrement, and wait if need be
-		if ( wait !== true && --jQuery.readyWait > 0 ) {
-			return;
-		}
-
-		// If there are functions bound, to execute
-		readyList.resolveWith( document, [ jQuery ] );
-	}
-} );
-
-jQuery.ready.then = readyList.then;
-
-// The ready event handler and self cleanup method
-function completed() {
-	document.removeEventListener( "DOMContentLoaded", completed );
-	window.removeEventListener( "load", completed );
-	jQuery.ready();
-}
-
-// Catch cases where $(document).ready() is called
-// after the browser event has already occurred.
-// Support: IE <=9 - 10 only
-// Older IE sometimes signals "interactive" too soon
-if ( document.readyState === "complete" ||
-	( document.readyState !== "loading" && !document.documentElement.doScroll ) ) {
-
-	// Handle it asynchronously to allow scripts the opportunity to delay ready
-	window.setTimeout( jQuery.ready );
-
-} else {
-
-	// Use the handy event callback
-	document.addEventListener( "DOMContentLoaded", completed );
-
-	// A fallback to window.onload, that will always work
-	window.addEventListener( "load", completed );
-}
-
-
-
-
-// Multifunctional method to get and set values of a collection
-// The value/s can optionally be executed if it's a function
-var access = function( elems, fn, key, value, chainable, emptyGet, raw ) {
-	var i = 0,
-		len = elems.length,
-		bulk = key == null;
-
-	// Sets many values
-	if ( toType( key ) === "object" ) {
-		chainable = true;
-		for ( i in key ) {
-			access( elems, fn, i, key[ i ], true, emptyGet, raw );
-		}
-
-	// Sets one value
-	} else if ( value !== undefined ) {
-		chainable = true;
-
-		if ( !isFunction( value ) ) {
-			raw = true;
-		}
-
-		if ( bulk ) {
-
-			// Bulk operations run against the entire set
-			if ( raw ) {
-				fn.call( elems, value );
-				fn = null;
-
-			// ...except when executing function values
-			} else {
-				bulk = fn;
-				fn = function( elem, _key, value ) {
-					return bulk.call( jQuery( elem ), value );
-				};
-			}
-		}
-
-		if ( fn ) {
-			for ( ; i < len; i++ ) {
-				fn(
-					elems[ i ], key, raw ?
-					value :
-					value.call( elems[ i ], i, fn( elems[ i ], key ) )
-				);
-			}
-		}
-	}
-
-	if ( chainable ) {
-		return elems;
-	}
-
-	// Gets
-	if ( bulk ) {
-		return fn.call( elems );
-	}
-
-	return len ? fn( elems[ 0 ], key ) : emptyGet;
-};
-
-
-// Matches dashed string for camelizing
-var rmsPrefix = /^-ms-/,
-	rdashAlpha = /-([a-z])/g;
-
-// Used by camelCase as callback to replace()
-function fcamelCase( _all, letter ) {
-	return letter.toUpperCase();
-}
-
-// Convert dashed to camelCase; used by the css and data modules
-// Support: IE <=9 - 11, Edge 12 - 15
-// Microsoft forgot to hump their vendor prefix (#9572)
-function camelCase( string ) {
-	return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase );
-}
-var acceptData = function( owner ) {
-
-	// Accepts only:
-	//  - Node
-	//    - Node.ELEMENT_NODE
-	//    - Node.DOCUMENT_NODE
-	//  - Object
-	//    - Any
-	return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType );
-};
-
-
-
-
-function Data() {
-	this.expando = jQuery.expando + Data.uid++;
-}
-
-Data.uid = 1;
-
-Data.prototype = {
-
-	cache: function( owner ) {
-
-		// Check if the owner object already has a cache
-		var value = owner[ this.expando ];
-
-		// If not, create one
-		if ( !value ) {
-			value = {};
-
-			// We can accept data for non-element nodes in modern browsers,
-			// but we should not, see #8335.
-			// Always return an empty object.
-			if ( acceptData( owner ) ) {
-
-				// If it is a node unlikely to be stringify-ed or looped over
-				// use plain assignment
-				if ( owner.nodeType ) {
-					owner[ this.expando ] = value;
-
-				// Otherwise secure it in a non-enumerable property
-				// configurable must be true to allow the property to be
-				// deleted when data is removed
-				} else {
-					Object.defineProperty( owner, this.expando, {
-						value: value,
-						configurable: true
-					} );
-				}
-			}
-		}
-
-		return value;
-	},
-	set: function( owner, data, value ) {
-		var prop,
-			cache = this.cache( owner );
-
-		// Handle: [ owner, key, value ] args
-		// Always use camelCase key (gh-2257)
-		if ( typeof data === "string" ) {
-			cache[ camelCase( data ) ] = value;
-
-		// Handle: [ owner, { properties } ] args
-		} else {
-
-			// Copy the properties one-by-one to the cache object
-			for ( prop in data ) {
-				cache[ camelCase( prop ) ] = data[ prop ];
-			}
-		}
-		return cache;
-	},
-	get: function( owner, key ) {
-		return key === undefined ?
-			this.cache( owner ) :
-
-			// Always use camelCase key (gh-2257)
-			owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ];
-	},
-	access: function( owner, key, value ) {
-
-		// In cases where either:
-		//
-		//   1. No key was specified
-		//   2. A string key was specified, but no value provided
-		//
-		// Take the "read" path and allow the get method to determine
-		// which value to return, respectively either:
-		//
-		//   1. The entire cache object
-		//   2. The data stored at the key
-		//
-		if ( key === undefined ||
-				( ( key && typeof key === "string" ) && value === undefined ) ) {
-
-			return this.get( owner, key );
-		}
-
-		// When the key is not a string, or both a key and value
-		// are specified, set or extend (existing objects) with either:
-		//
-		//   1. An object of properties
-		//   2. A key and value
-		//
-		this.set( owner, key, value );
-
-		// Since the "set" path can have two possible entry points
-		// return the expected data based on which path was taken[*]
-		return value !== undefined ? value : key;
-	},
-	remove: function( owner, key ) {
-		var i,
-			cache = owner[ this.expando ];
-
-		if ( cache === undefined ) {
-			return;
-		}
-
-		if ( key !== undefined ) {
-
-			// Support array or space separated string of keys
-			if ( Array.isArray( key ) ) {
-
-				// If key is an array of keys...
-				// We always set camelCase keys, so remove that.
-				key = key.map( camelCase );
-			} else {
-				key = camelCase( key );
-
-				// If a key with the spaces exists, use it.
-				// Otherwise, create an array by matching non-whitespace
-				key = key in cache ?
-					[ key ] :
-					( key.match( rnothtmlwhite ) || [] );
-			}
-
-			i = key.length;
-
-			while ( i-- ) {
-				delete cache[ key[ i ] ];
-			}
-		}
-
-		// Remove the expando if there's no more data
-		if ( key === undefined || jQuery.isEmptyObject( cache ) ) {
-
-			// Support: Chrome <=35 - 45
-			// Webkit & Blink performance suffers when deleting properties
-			// from DOM nodes, so set to undefined instead
-			// https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted)
-			if ( owner.nodeType ) {
-				owner[ this.expando ] = undefined;
-			} else {
-				delete owner[ this.expando ];
-			}
-		}
-	},
-	hasData: function( owner ) {
-		var cache = owner[ this.expando ];
-		return cache !== undefined && !jQuery.isEmptyObject( cache );
-	}
-};
-var dataPriv = new Data();
-
-var dataUser = new Data();
-
-
-
-//	Implementation Summary
-//
-//	1. Enforce API surface and semantic compatibility with 1.9.x branch
-//	2. Improve the module's maintainability by reducing the storage
-//		paths to a single mechanism.
-//	3. Use the same single mechanism to support "private" and "user" data.
-//	4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData)
-//	5. Avoid exposing implementation details on user objects (eg. expando properties)
-//	6. Provide a clear path for implementation upgrade to WeakMap in 2014
-
-var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/,
-	rmultiDash = /[A-Z]/g;
-
-function getData( data ) {
-	if ( data === "true" ) {
-		return true;
-	}
-
-	if ( data === "false" ) {
-		return false;
-	}
-
-	if ( data === "null" ) {
-		return null;
-	}
-
-	// Only convert to a number if it doesn't change the string
-	if ( data === +data + "" ) {
-		return +data;
-	}
-
-	if ( rbrace.test( data ) ) {
-		return JSON.parse( data );
-	}
-
-	return data;
-}
-
-function dataAttr( elem, key, data ) {
-	var name;
-
-	// If nothing was found internally, try to fetch any
-	// data from the HTML5 data-* attribute
-	if ( data === undefined && elem.nodeType === 1 ) {
-		name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase();
-		data = elem.getAttribute( name );
-
-		if ( typeof data === "string" ) {
-			try {
-				data = getData( data );
-			} catch ( e ) {}
-
-			// Make sure we set the data so it isn't changed later
-			dataUser.set( elem, key, data );
-		} else {
-			data = undefined;
-		}
-	}
-	return data;
-}
-
-jQuery.extend( {
-	hasData: function( elem ) {
-		return dataUser.hasData( elem ) || dataPriv.hasData( elem );
-	},
-
-	data: function( elem, name, data ) {
-		return dataUser.access( elem, name, data );
-	},
-
-	removeData: function( elem, name ) {
-		dataUser.remove( elem, name );
-	},
-
-	// TODO: Now that all calls to _data and _removeData have been replaced
-	// with direct calls to dataPriv methods, these can be deprecated.
-	_data: function( elem, name, data ) {
-		return dataPriv.access( elem, name, data );
-	},
-
-	_removeData: function( elem, name ) {
-		dataPriv.remove( elem, name );
-	}
-} );
-
-jQuery.fn.extend( {
-	data: function( key, value ) {
-		var i, name, data,
-			elem = this[ 0 ],
-			attrs = elem && elem.attributes;
-
-		// Gets all values
-		if ( key === undefined ) {
-			if ( this.length ) {
-				data = dataUser.get( elem );
-
-				if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) {
-					i = attrs.length;
-					while ( i-- ) {
-
-						// Support: IE 11 only
-						// The attrs elements can be null (#14894)
-						if ( attrs[ i ] ) {
-							name = attrs[ i ].name;
-							if ( name.indexOf( "data-" ) === 0 ) {
-								name = camelCase( name.slice( 5 ) );
-								dataAttr( elem, name, data[ name ] );
-							}
-						}
-					}
-					dataPriv.set( elem, "hasDataAttrs", true );
-				}
-			}
-
-			return data;
-		}
-
-		// Sets multiple values
-		if ( typeof key === "object" ) {
-			return this.each( function() {
-				dataUser.set( this, key );
-			} );
-		}
-
-		return access( this, function( value ) {
-			var data;
-
-			// The calling jQuery object (element matches) is not empty
-			// (and therefore has an element appears at this[ 0 ]) and the
-			// `value` parameter was not undefined. An empty jQuery object
-			// will result in `undefined` for elem = this[ 0 ] which will
-			// throw an exception if an attempt to read a data cache is made.
-			if ( elem && value === undefined ) {
-
-				// Attempt to get data from the cache
-				// The key will always be camelCased in Data
-				data = dataUser.get( elem, key );
-				if ( data !== undefined ) {
-					return data;
-				}
-
-				// Attempt to "discover" the data in
-				// HTML5 custom data-* attrs
-				data = dataAttr( elem, key );
-				if ( data !== undefined ) {
-					return data;
-				}
-
-				// We tried really hard, but the data doesn't exist.
-				return;
-			}
-
-			// Set the data...
-			this.each( function() {
-
-				// We always store the camelCased key
-				dataUser.set( this, key, value );
-			} );
-		}, null, value, arguments.length > 1, null, true );
-	},
-
-	removeData: function( key ) {
-		return this.each( function() {
-			dataUser.remove( this, key );
-		} );
-	}
-} );
-
-
-jQuery.extend( {
-	queue: function( elem, type, data ) {
-		var queue;
-
-		if ( elem ) {
-			type = ( type || "fx" ) + "queue";
-			queue = dataPriv.get( elem, type );
-
-			// Speed up dequeue by getting out quickly if this is just a lookup
-			if ( data ) {
-				if ( !queue || Array.isArray( data ) ) {
-					queue = dataPriv.access( elem, type, jQuery.makeArray( data ) );
-				} else {
-					queue.push( data );
-				}
-			}
-			return queue || [];
-		}
-	},
-
-	dequeue: function( elem, type ) {
-		type = type || "fx";
-
-		var queue = jQuery.queue( elem, type ),
-			startLength = queue.length,
-			fn = queue.shift(),
-			hooks = jQuery._queueHooks( elem, type ),
-			next = function() {
-				jQuery.dequeue( elem, type );
-			};
-
-		// If the fx queue is dequeued, always remove the progress sentinel
-		if ( fn === "inprogress" ) {
-			fn = queue.shift();
-			startLength--;
-		}
-
-		if ( fn ) {
-
-			// Add a progress sentinel to prevent the fx queue from being
-			// automatically dequeued
-			if ( type === "fx" ) {
-				queue.unshift( "inprogress" );
-			}
-
-			// Clear up the last queue stop function
-			delete hooks.stop;
-			fn.call( elem, next, hooks );
-		}
-
-		if ( !startLength && hooks ) {
-			hooks.empty.fire();
-		}
-	},
-
-	// Not public - generate a queueHooks object, or return the current one
-	_queueHooks: function( elem, type ) {
-		var key = type + "queueHooks";
-		return dataPriv.get( elem, key ) || dataPriv.access( elem, key, {
-			empty: jQuery.Callbacks( "once memory" ).add( function() {
-				dataPriv.remove( elem, [ type + "queue", key ] );
-			} )
-		} );
-	}
-} );
-
-jQuery.fn.extend( {
-	queue: function( type, data ) {
-		var setter = 2;
-
-		if ( typeof type !== "string" ) {
-			data = type;
-			type = "fx";
-			setter--;
-		}
-
-		if ( arguments.length < setter ) {
-			return jQuery.queue( this[ 0 ], type );
-		}
-
-		return data === undefined ?
-			this :
-			this.each( function() {
-				var queue = jQuery.queue( this, type, data );
-
-				// Ensure a hooks for this queue
-				jQuery._queueHooks( this, type );
-
-				if ( type === "fx" && queue[ 0 ] !== "inprogress" ) {
-					jQuery.dequeue( this, type );
-				}
-			} );
-	},
-	dequeue: function( type ) {
-		return this.each( function() {
-			jQuery.dequeue( this, type );
-		} );
-	},
-	clearQueue: function( type ) {
-		return this.queue( type || "fx", [] );
-	},
-
-	// Get a promise resolved when queues of a certain type
-	// are emptied (fx is the type by default)
-	promise: function( type, obj ) {
-		var tmp,
-			count = 1,
-			defer = jQuery.Deferred(),
-			elements = this,
-			i = this.length,
-			resolve = function() {
-				if ( !( --count ) ) {
-					defer.resolveWith( elements, [ elements ] );
-				}
-			};
-
-		if ( typeof type !== "string" ) {
-			obj = type;
-			type = undefined;
-		}
-		type = type || "fx";
-
-		while ( i-- ) {
-			tmp = dataPriv.get( elements[ i ], type + "queueHooks" );
-			if ( tmp && tmp.empty ) {
-				count++;
-				tmp.empty.add( resolve );
-			}
-		}
-		resolve();
-		return defer.promise( obj );
-	}
-} );
-var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source;
-
-var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" );
-
-
-var cssExpand = [ "Top", "Right", "Bottom", "Left" ];
-
-var documentElement = document.documentElement;
-
-
-
-	var isAttached = function( elem ) {
-			return jQuery.contains( elem.ownerDocument, elem );
-		},
-		composed = { composed: true };
-
-	// Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only
-	// Check attachment across shadow DOM boundaries when possible (gh-3504)
-	// Support: iOS 10.0-10.2 only
-	// Early iOS 10 versions support `attachShadow` but not `getRootNode`,
-	// leading to errors. We need to check for `getRootNode`.
-	if ( documentElement.getRootNode ) {
-		isAttached = function( elem ) {
-			return jQuery.contains( elem.ownerDocument, elem ) ||
-				elem.getRootNode( composed ) === elem.ownerDocument;
-		};
-	}
-var isHiddenWithinTree = function( elem, el ) {
-
-		// isHiddenWithinTree might be called from jQuery#filter function;
-		// in that case, element will be second argument
-		elem = el || elem;
-
-		// Inline style trumps all
-		return elem.style.display === "none" ||
-			elem.style.display === "" &&
-
-			// Otherwise, check computed style
-			// Support: Firefox <=43 - 45
-			// Disconnected elements can have computed display: none, so first confirm that elem is
-			// in the document.
-			isAttached( elem ) &&
-
-			jQuery.css( elem, "display" ) === "none";
-	};
-
-
-
-function adjustCSS( elem, prop, valueParts, tween ) {
-	var adjusted, scale,
-		maxIterations = 20,
-		currentValue = tween ?
-			function() {
-				return tween.cur();
-			} :
-			function() {
-				return jQuery.css( elem, prop, "" );
-			},
-		initial = currentValue(),
-		unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ),
-
-		// Starting value computation is required for potential unit mismatches
-		initialInUnit = elem.nodeType &&
-			( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) &&
-			rcssNum.exec( jQuery.css( elem, prop ) );
-
-	if ( initialInUnit && initialInUnit[ 3 ] !== unit ) {
-
-		// Support: Firefox <=54
-		// Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144)
-		initial = initial / 2;
-
-		// Trust units reported by jQuery.css
-		unit = unit || initialInUnit[ 3 ];
-
-		// Iteratively approximate from a nonzero starting point
-		initialInUnit = +initial || 1;
-
-		while ( maxIterations-- ) {
-
-			// Evaluate and update our best guess (doubling guesses that zero out).
-			// Finish if the scale equals or crosses 1 (making the old*new product non-positive).
-			jQuery.style( elem, prop, initialInUnit + unit );
-			if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) {
-				maxIterations = 0;
-			}
-			initialInUnit = initialInUnit / scale;
-
-		}
-
-		initialInUnit = initialInUnit * 2;
-		jQuery.style( elem, prop, initialInUnit + unit );
-
-		// Make sure we update the tween properties later on
-		valueParts = valueParts || [];
-	}
-
-	if ( valueParts ) {
-		initialInUnit = +initialInUnit || +initial || 0;
-
-		// Apply relative offset (+=/-=) if specified
-		adjusted = valueParts[ 1 ] ?
-			initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] :
-			+valueParts[ 2 ];
-		if ( tween ) {
-			tween.unit = unit;
-			tween.start = initialInUnit;
-			tween.end = adjusted;
-		}
-	}
-	return adjusted;
-}
-
-
-var defaultDisplayMap = {};
-
-function getDefaultDisplay( elem ) {
-	var temp,
-		doc = elem.ownerDocument,
-		nodeName = elem.nodeName,
-		display = defaultDisplayMap[ nodeName ];
-
-	if ( display ) {
-		return display;
-	}
-
-	temp = doc.body.appendChild( doc.createElement( nodeName ) );
-	display = jQuery.css( temp, "display" );
-
-	temp.parentNode.removeChild( temp );
-
-	if ( display === "none" ) {
-		display = "block";
-	}
-	defaultDisplayMap[ nodeName ] = display;
-
-	return display;
-}
-
-function showHide( elements, show ) {
-	var display, elem,
-		values = [],
-		index = 0,
-		length = elements.length;
-
-	// Determine new display value for elements that need to change
-	for ( ; index < length; index++ ) {
-		elem = elements[ index ];
-		if ( !elem.style ) {
-			continue;
-		}
-
-		display = elem.style.display;
-		if ( show ) {
-
-			// Since we force visibility upon cascade-hidden elements, an immediate (and slow)
-			// check is required in this first loop unless we have a nonempty display value (either
-			// inline or about-to-be-restored)
-			if ( display === "none" ) {
-				values[ index ] = dataPriv.get( elem, "display" ) || null;
-				if ( !values[ index ] ) {
-					elem.style.display = "";
-				}
-			}
-			if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) {
-				values[ index ] = getDefaultDisplay( elem );
-			}
-		} else {
-			if ( display !== "none" ) {
-				values[ index ] = "none";
-
-				// Remember what we're overwriting
-				dataPriv.set( elem, "display", display );
-			}
-		}
-	}
-
-	// Set the display of the elements in a second loop to avoid constant reflow
-	for ( index = 0; index < length; index++ ) {
-		if ( values[ index ] != null ) {
-			elements[ index ].style.display = values[ index ];
-		}
-	}
-
-	return elements;
-}
-
-jQuery.fn.extend( {
-	show: function() {
-		return showHide( this, true );
-	},
-	hide: function() {
-		return showHide( this );
-	},
-	toggle: function( state ) {
-		if ( typeof state === "boolean" ) {
-			return state ? this.show() : this.hide();
-		}
-
-		return this.each( function() {
-			if ( isHiddenWithinTree( this ) ) {
-				jQuery( this ).show();
-			} else {
-				jQuery( this ).hide();
-			}
-		} );
-	}
-} );
-var rcheckableType = ( /^(?:checkbox|radio)$/i );
-
-var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i );
-
-var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i );
-
-
-
-( function() {
-	var fragment = document.createDocumentFragment(),
-		div = fragment.appendChild( document.createElement( "div" ) ),
-		input = document.createElement( "input" );
-
-	// Support: Android 4.0 - 4.3 only
-	// Check state lost if the name is set (#11217)
-	// Support: Windows Web Apps (WWA)
-	// `name` and `type` must use .setAttribute for WWA (#14901)
-	input.setAttribute( "type", "radio" );
-	input.setAttribute( "checked", "checked" );
-	input.setAttribute( "name", "t" );
-
-	div.appendChild( input );
-
-	// Support: Android <=4.1 only
-	// Older WebKit doesn't clone checked state correctly in fragments
-	support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked;
-
-	// Support: IE <=11 only
-	// Make sure textarea (and checkbox) defaultValue is properly cloned
-	div.innerHTML = "<textarea>x</textarea>";
-	support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue;
-
-	// Support: IE <=9 only
-	// IE <=9 replaces <option> tags with their contents when inserted outside of
-	// the select element.
-	div.innerHTML = "<option></option>";
-	support.option = !!div.lastChild;
-} )();
-
-
-// We have to close these tags to support XHTML (#13200)
-var wrapMap = {
-
-	// XHTML parsers do not magically insert elements in the
-	// same way that tag soup parsers do. So we cannot shorten
-	// this by omitting <tbody> or other required elements.
-	thead: [ 1, "<table>", "</table>" ],
-	col: [ 2, "<table><colgroup>", "</colgroup></table>" ],
-	tr: [ 2, "<table><tbody>", "</tbody></table>" ],
-	td: [ 3, "<table><tbody><tr>", "</tr></tbody></table>" ],
-
-	_default: [ 0, "", "" ]
-};
-
-wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead;
-wrapMap.th = wrapMap.td;
-
-// Support: IE <=9 only
-if ( !support.option ) {
-	wrapMap.optgroup = wrapMap.option = [ 1, "<select multiple='multiple'>", "</select>" ];
-}
-
-
-function getAll( context, tag ) {
-
-	// Support: IE <=9 - 11 only
-	// Use typeof to avoid zero-argument method invocation on host objects (#15151)
-	var ret;
-
-	if ( typeof context.getElementsByTagName !== "undefined" ) {
-		ret = context.getElementsByTagName( tag || "*" );
-
-	} else if ( typeof context.querySelectorAll !== "undefined" ) {
-		ret = context.querySelectorAll( tag || "*" );
-
-	} else {
-		ret = [];
-	}
-
-	if ( tag === undefined || tag && nodeName( context, tag ) ) {
-		return jQuery.merge( [ context ], ret );
-	}
-
-	return ret;
-}
-
-
-// Mark scripts as having already been evaluated
-function setGlobalEval( elems, refElements ) {
-	var i = 0,
-		l = elems.length;
-
-	for ( ; i < l; i++ ) {
-		dataPriv.set(
-			elems[ i ],
-			"globalEval",
-			!refElements || dataPriv.get( refElements[ i ], "globalEval" )
-		);
-	}
-}
-
-
-var rhtml = /<|&#?\w+;/;
-
-function buildFragment( elems, context, scripts, selection, ignored ) {
-	var elem, tmp, tag, wrap, attached, j,
-		fragment = context.createDocumentFragment(),
-		nodes = [],
-		i = 0,
-		l = elems.length;
-
-	for ( ; i < l; i++ ) {
-		elem = elems[ i ];
-
-		if ( elem || elem === 0 ) {
-
-			// Add nodes directly
-			if ( toType( elem ) === "object" ) {
-
-				// Support: Android <=4.0 only, PhantomJS 1 only
-				// push.apply(_, arraylike) throws on ancient WebKit
-				jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem );
-
-			// Convert non-html into a text node
-			} else if ( !rhtml.test( elem ) ) {
-				nodes.push( context.createTextNode( elem ) );
-
-			// Convert html into DOM nodes
-			} else {
-				tmp = tmp || fragment.appendChild( context.createElement( "div" ) );
-
-				// Deserialize a standard representation
-				tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase();
-				wrap = wrapMap[ tag ] || wrapMap._default;
-				tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ];
-
-				// Descend through wrappers to the right content
-				j = wrap[ 0 ];
-				while ( j-- ) {
-					tmp = tmp.lastChild;
-				}
-
-				// Support: Android <=4.0 only, PhantomJS 1 only
-				// push.apply(_, arraylike) throws on ancient WebKit
-				jQuery.merge( nodes, tmp.childNodes );
-
-				// Remember the top-level container
-				tmp = fragment.firstChild;
-
-				// Ensure the created nodes are orphaned (#12392)
-				tmp.textContent = "";
-			}
-		}
-	}
-
-	// Remove wrapper from fragment
-	fragment.textContent = "";
-
-	i = 0;
-	while ( ( elem = nodes[ i++ ] ) ) {
-
-		// Skip elements already in the context collection (trac-4087)
-		if ( selection && jQuery.inArray( elem, selection ) > -1 ) {
-			if ( ignored ) {
-				ignored.push( elem );
-			}
-			continue;
-		}
-
-		attached = isAttached( elem );
-
-		// Append to fragment
-		tmp = getAll( fragment.appendChild( elem ), "script" );
-
-		// Preserve script evaluation history
-		if ( attached ) {
-			setGlobalEval( tmp );
-		}
-
-		// Capture executables
-		if ( scripts ) {
-			j = 0;
-			while ( ( elem = tmp[ j++ ] ) ) {
-				if ( rscriptType.test( elem.type || "" ) ) {
-					scripts.push( elem );
-				}
-			}
-		}
-	}
-
-	return fragment;
-}
-
-
-var
-	rkeyEvent = /^key/,
-	rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/,
-	rtypenamespace = /^([^.]*)(?:\.(.+)|)/;
-
-function returnTrue() {
-	return true;
-}
-
-function returnFalse() {
-	return false;
-}
-
-// Support: IE <=9 - 11+
-// focus() and blur() are asynchronous, except when they are no-op.
-// So expect focus to be synchronous when the element is already active,
-// and blur to be synchronous when the element is not already active.
-// (focus and blur are always synchronous in other supported browsers,
-// this just defines when we can count on it).
-function expectSync( elem, type ) {
-	return ( elem === safeActiveElement() ) === ( type === "focus" );
-}
-
-// Support: IE <=9 only
-// Accessing document.activeElement can throw unexpectedly
-// https://bugs.jquery.com/ticket/13393
-function safeActiveElement() {
-	try {
-		return document.activeElement;
-	} catch ( err ) { }
-}
-
-function on( elem, types, selector, data, fn, one ) {
-	var origFn, type;
-
-	// Types can be a map of types/handlers
-	if ( typeof types === "object" ) {
-
-		// ( types-Object, selector, data )
-		if ( typeof selector !== "string" ) {
-
-			// ( types-Object, data )
-			data = data || selector;
-			selector = undefined;
-		}
-		for ( type in types ) {
-			on( elem, type, selector, data, types[ type ], one );
-		}
-		return elem;
-	}
-
-	if ( data == null && fn == null ) {
-
-		// ( types, fn )
-		fn = selector;
-		data = selector = undefined;
-	} else if ( fn == null ) {
-		if ( typeof selector === "string" ) {
-
-			// ( types, selector, fn )
-			fn = data;
-			data = undefined;
-		} else {
-
-			// ( types, data, fn )
-			fn = data;
-			data = selector;
-			selector = undefined;
-		}
-	}
-	if ( fn === false ) {
-		fn = returnFalse;
-	} else if ( !fn ) {
-		return elem;
-	}
-
-	if ( one === 1 ) {
-		origFn = fn;
-		fn = function( event ) {
-
-			// Can use an empty set, since event contains the info
-			jQuery().off( event );
-			return origFn.apply( this, arguments );
-		};
-
-		// Use same guid so caller can remove using origFn
-		fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ );
-	}
-	return elem.each( function() {
-		jQuery.event.add( this, types, fn, data, selector );
-	} );
-}
-
-/*
- * Helper functions for managing events -- not part of the public interface.
- * Props to Dean Edwards' addEvent library for many of the ideas.
- */
-jQuery.event = {
-
-	global: {},
-
-	add: function( elem, types, handler, data, selector ) {
-
-		var handleObjIn, eventHandle, tmp,
-			events, t, handleObj,
-			special, handlers, type, namespaces, origType,
-			elemData = dataPriv.get( elem );
-
-		// Only attach events to objects that accept data
-		if ( !acceptData( elem ) ) {
-			return;
-		}
-
-		// Caller can pass in an object of custom data in lieu of the handler
-		if ( handler.handler ) {
-			handleObjIn = handler;
-			handler = handleObjIn.handler;
-			selector = handleObjIn.selector;
-		}
-
-		// Ensure that invalid selectors throw exceptions at attach time
-		// Evaluate against documentElement in case elem is a non-element node (e.g., document)
-		if ( selector ) {
-			jQuery.find.matchesSelector( documentElement, selector );
-		}
-
-		// Make sure that the handler has a unique ID, used to find/remove it later
-		if ( !handler.guid ) {
-			handler.guid = jQuery.guid++;
-		}
-
-		// Init the element's event structure and main handler, if this is the first
-		if ( !( events = elemData.events ) ) {
-			events = elemData.events = Object.create( null );
-		}
-		if ( !( eventHandle = elemData.handle ) ) {
-			eventHandle = elemData.handle = function( e ) {
-
-				// Discard the second event of a jQuery.event.trigger() and
-				// when an event is called after a page has unloaded
-				return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ?
-					jQuery.event.dispatch.apply( elem, arguments ) : undefined;
-			};
-		}
-
-		// Handle multiple events separated by a space
-		types = ( types || "" ).match( rnothtmlwhite ) || [ "" ];
-		t = types.length;
-		while ( t-- ) {
-			tmp = rtypenamespace.exec( types[ t ] ) || [];
-			type = origType = tmp[ 1 ];
-			namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort();
-
-			// There *must* be a type, no attaching namespace-only handlers
-			if ( !type ) {
-				continue;
-			}
-
-			// If event changes its type, use the special event handlers for the changed type
-			special = jQuery.event.special[ type ] || {};
-
-			// If selector defined, determine special event api type, otherwise given type
-			type = ( selector ? special.delegateType : special.bindType ) || type;
-
-			// Update special based on newly reset type
-			special = jQuery.event.special[ type ] || {};
-
-			// handleObj is passed to all event handlers
-			handleObj = jQuery.extend( {
-				type: type,
-				origType: origType,
-				data: data,
-				handler: handler,
-				guid: handler.guid,
-				selector: selector,
-				needsContext: selector && jQuery.expr.match.needsContext.test( selector ),
-				namespace: namespaces.join( "." )
-			}, handleObjIn );
-
-			// Init the event handler queue if we're the first
-			if ( !( handlers = events[ type ] ) ) {
-				handlers = events[ type ] = [];
-				handlers.delegateCount = 0;
-
-				// Only use addEventListener if the special events handler returns false
-				if ( !special.setup ||
-					special.setup.call( elem, data, namespaces, eventHandle ) === false ) {
-
-					if ( elem.addEventListener ) {
-						elem.addEventListener( type, eventHandle );
-					}
-				}
-			}
-
-			if ( special.add ) {
-				special.add.call( elem, handleObj );
-
-				if ( !handleObj.handler.guid ) {
-					handleObj.handler.guid = handler.guid;
-				}
-			}
-
-			// Add to the element's handler list, delegates in front
-			if ( selector ) {
-				handlers.splice( handlers.delegateCount++, 0, handleObj );
-			} else {
-				handlers.push( handleObj );
-			}
-
-			// Keep track of which events have ever been used, for event optimization
-			jQuery.event.global[ type ] = true;
-		}
-
-	},
-
-	// Detach an event or set of events from an element
-	remove: function( elem, types, handler, selector, mappedTypes ) {
-
-		var j, origCount, tmp,
-			events, t, handleObj,
-			special, handlers, type, namespaces, origType,
-			elemData = dataPriv.hasData( elem ) && dataPriv.get( elem );
-
-		if ( !elemData || !( events = elemData.events ) ) {
-			return;
-		}
-
-		// Once for each type.namespace in types; type may be omitted
-		types = ( types || "" ).match( rnothtmlwhite ) || [ "" ];
-		t = types.length;
-		while ( t-- ) {
-			tmp = rtypenamespace.exec( types[ t ] ) || [];
-			type = origType = tmp[ 1 ];
-			namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort();
-
-			// Unbind all events (on this namespace, if provided) for the element
-			if ( !type ) {
-				for ( type in events ) {
-					jQuery.event.remove( elem, type + types[ t ], handler, selector, true );
-				}
-				continue;
-			}
-
-			special = jQuery.event.special[ type ] || {};
-			type = ( selector ? special.delegateType : special.bindType ) || type;
-			handlers = events[ type ] || [];
-			tmp = tmp[ 2 ] &&
-				new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" );
-
-			// Remove matching events
-			origCount = j = handlers.length;
-			while ( j-- ) {
-				handleObj = handlers[ j ];
-
-				if ( ( mappedTypes || origType === handleObj.origType ) &&
-					( !handler || handler.guid === handleObj.guid ) &&
-					( !tmp || tmp.test( handleObj.namespace ) ) &&
-					( !selector || selector === handleObj.selector ||
-						selector === "**" && handleObj.selector ) ) {
-					handlers.splice( j, 1 );
-
-					if ( handleObj.selector ) {
-						handlers.delegateCount--;
-					}
-					if ( special.remove ) {
-						special.remove.call( elem, handleObj );
-					}
-				}
-			}
-
-			// Remove generic event handler if we removed something and no more handlers exist
-			// (avoids potential for endless recursion during removal of special event handlers)
-			if ( origCount && !handlers.length ) {
-				if ( !special.teardown ||
-					special.teardown.call( elem, namespaces, elemData.handle ) === false ) {
-
-					jQuery.removeEvent( elem, type, elemData.handle );
-				}
-
-				delete events[ type ];
-			}
-		}
-
-		// Remove data and the expando if it's no longer used
-		if ( jQuery.isEmptyObject( events ) ) {
-			dataPriv.remove( elem, "handle events" );
-		}
-	},
-
-	dispatch: function( nativeEvent ) {
-
-		var i, j, ret, matched, handleObj, handlerQueue,
-			args = new Array( arguments.length ),
-
-			// Make a writable jQuery.Event from the native event object
-			event = jQuery.event.fix( nativeEvent ),
-
-			handlers = (
-					dataPriv.get( this, "events" ) || Object.create( null )
-				)[ event.type ] || [],
-			special = jQuery.event.special[ event.type ] || {};
-
-		// Use the fix-ed jQuery.Event rather than the (read-only) native event
-		args[ 0 ] = event;
-
-		for ( i = 1; i < arguments.length; i++ ) {
-			args[ i ] = arguments[ i ];
-		}
-
-		event.delegateTarget = this;
-
-		// Call the preDispatch hook for the mapped type, and let it bail if desired
-		if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) {
-			return;
-		}
-
-		// Determine handlers
-		handlerQueue = jQuery.event.handlers.call( this, event, handlers );
-
-		// Run delegates first; they may want to stop propagation beneath us
-		i = 0;
-		while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) {
-			event.currentTarget = matched.elem;
-
-			j = 0;
-			while ( ( handleObj = matched.handlers[ j++ ] ) &&
-				!event.isImmediatePropagationStopped() ) {
-
-				// If the event is namespaced, then each handler is only invoked if it is
-				// specially universal or its namespaces are a superset of the event's.
-				if ( !event.rnamespace || handleObj.namespace === false ||
-					event.rnamespace.test( handleObj.namespace ) ) {
-
-					event.handleObj = handleObj;
-					event.data = handleObj.data;
-
-					ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle ||
-						handleObj.handler ).apply( matched.elem, args );
-
-					if ( ret !== undefined ) {
-						if ( ( event.result = ret ) === false ) {
-							event.preventDefault();
-							event.stopPropagation();
-						}
-					}
-				}
-			}
-		}
-
-		// Call the postDispatch hook for the mapped type
-		if ( special.postDispatch ) {
-			special.postDispatch.call( this, event );
-		}
-
-		return event.result;
-	},
-
-	handlers: function( event, handlers ) {
-		var i, handleObj, sel, matchedHandlers, matchedSelectors,
-			handlerQueue = [],
-			delegateCount = handlers.delegateCount,
-			cur = event.target;
-
-		// Find delegate handlers
-		if ( delegateCount &&
-
-			// Support: IE <=9
-			// Black-hole SVG <use> instance trees (trac-13180)
-			cur.nodeType &&
-
-			// Support: Firefox <=42
-			// Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861)
-			// https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click
-			// Support: IE 11 only
-			// ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343)
-			!( event.type === "click" && event.button >= 1 ) ) {
-
-			for ( ; cur !== this; cur = cur.parentNode || this ) {
-
-				// Don't check non-elements (#13208)
-				// Don't process clicks on disabled elements (#6911, #8165, #11382, #11764)
-				if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) {
-					matchedHandlers = [];
-					matchedSelectors = {};
-					for ( i = 0; i < delegateCount; i++ ) {
-						handleObj = handlers[ i ];
-
-						// Don't conflict with Object.prototype properties (#13203)
-						sel = handleObj.selector + " ";
-
-						if ( matchedSelectors[ sel ] === undefined ) {
-							matchedSelectors[ sel ] = handleObj.needsContext ?
-								jQuery( sel, this ).index( cur ) > -1 :
-								jQuery.find( sel, this, null, [ cur ] ).length;
-						}
-						if ( matchedSelectors[ sel ] ) {
-							matchedHandlers.push( handleObj );
-						}
-					}
-					if ( matchedHandlers.length ) {
-						handlerQueue.push( { elem: cur, handlers: matchedHandlers } );
-					}
-				}
-			}
-		}
-
-		// Add the remaining (directly-bound) handlers
-		cur = this;
-		if ( delegateCount < handlers.length ) {
-			handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } );
-		}
-
-		return handlerQueue;
-	},
-
-	addProp: function( name, hook ) {
-		Object.defineProperty( jQuery.Event.prototype, name, {
-			enumerable: true,
-			configurable: true,
-
-			get: isFunction( hook ) ?
-				function() {
-					if ( this.originalEvent ) {
-							return hook( this.originalEvent );
-					}
-				} :
-				function() {
-					if ( this.originalEvent ) {
-							return this.originalEvent[ name ];
-					}
-				},
-
-			set: function( value ) {
-				Object.defineProperty( this, name, {
-					enumerable: true,
-					configurable: true,
-					writable: true,
-					value: value
-				} );
-			}
-		} );
-	},
-
-	fix: function( originalEvent ) {
-		return originalEvent[ jQuery.expando ] ?
-			originalEvent :
-			new jQuery.Event( originalEvent );
-	},
-
-	special: {
-		load: {
-
-			// Prevent triggered image.load events from bubbling to window.load
-			noBubble: true
-		},
-		click: {
-
-			// Utilize native event to ensure correct state for checkable inputs
-			setup: function( data ) {
-
-				// For mutual compressibility with _default, replace `this` access with a local var.
-				// `|| data` is dead code meant only to preserve the variable through minification.
-				var el = this || data;
-
-				// Claim the first handler
-				if ( rcheckableType.test( el.type ) &&
-					el.click && nodeName( el, "input" ) ) {
-
-					// dataPriv.set( el, "click", ... )
-					leverageNative( el, "click", returnTrue );
-				}
-
-				// Return false to allow normal processing in the caller
-				return false;
-			},
-			trigger: function( data ) {
-
-				// For mutual compressibility with _default, replace `this` access with a local var.
-				// `|| data` is dead code meant only to preserve the variable through minification.
-				var el = this || data;
-
-				// Force setup before triggering a click
-				if ( rcheckableType.test( el.type ) &&
-					el.click && nodeName( el, "input" ) ) {
-
-					leverageNative( el, "click" );
-				}
-
-				// Return non-false to allow normal event-path propagation
-				return true;
-			},
-
-			// For cross-browser consistency, suppress native .click() on links
-			// Also prevent it if we're currently inside a leveraged native-event stack
-			_default: function( event ) {
-				var target = event.target;
-				return rcheckableType.test( target.type ) &&
-					target.click && nodeName( target, "input" ) &&
-					dataPriv.get( target, "click" ) ||
-					nodeName( target, "a" );
-			}
-		},
-
-		beforeunload: {
-			postDispatch: function( event ) {
-
-				// Support: Firefox 20+
-				// Firefox doesn't alert if the returnValue field is not set.
-				if ( event.result !== undefined && event.originalEvent ) {
-					event.originalEvent.returnValue = event.result;
-				}
-			}
-		}
-	}
-};
-
-// Ensure the presence of an event listener that handles manually-triggered
-// synthetic events by interrupting progress until reinvoked in response to
-// *native* events that it fires directly, ensuring that state changes have
-// already occurred before other listeners are invoked.
-function leverageNative( el, type, expectSync ) {
-
-	// Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add
-	if ( !expectSync ) {
-		if ( dataPriv.get( el, type ) === undefined ) {
-			jQuery.event.add( el, type, returnTrue );
-		}
-		return;
-	}
-
-	// Register the controller as a special universal handler for all event namespaces
-	dataPriv.set( el, type, false );
-	jQuery.event.add( el, type, {
-		namespace: false,
-		handler: function( event ) {
-			var notAsync, result,
-				saved = dataPriv.get( this, type );
-
-			if ( ( event.isTrigger & 1 ) && this[ type ] ) {
-
-				// Interrupt processing of the outer synthetic .trigger()ed event
-				// Saved data should be false in such cases, but might be a leftover capture object
-				// from an async native handler (gh-4350)
-				if ( !saved.length ) {
-
-					// Store arguments for use when handling the inner native event
-					// There will always be at least one argument (an event object), so this array
-					// will not be confused with a leftover capture object.
-					saved = slice.call( arguments );
-					dataPriv.set( this, type, saved );
-
-					// Trigger the native event and capture its result
-					// Support: IE <=9 - 11+
-					// focus() and blur() are asynchronous
-					notAsync = expectSync( this, type );
-					this[ type ]();
-					result = dataPriv.get( this, type );
-					if ( saved !== result || notAsync ) {
-						dataPriv.set( this, type, false );
-					} else {
-						result = {};
-					}
-					if ( saved !== result ) {
-
-						// Cancel the outer synthetic event
-						event.stopImmediatePropagation();
-						event.preventDefault();
-						return result.value;
-					}
-
-				// If this is an inner synthetic event for an event with a bubbling surrogate
-				// (focus or blur), assume that the surrogate already propagated from triggering the
-				// native event and prevent that from happening again here.
-				// This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the
-				// bubbling surrogate propagates *after* the non-bubbling base), but that seems
-				// less bad than duplication.
-				} else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) {
-					event.stopPropagation();
-				}
-
-			// If this is a native event triggered above, everything is now in order
-			// Fire an inner synthetic event with the original arguments
-			} else if ( saved.length ) {
-
-				// ...and capture the result
-				dataPriv.set( this, type, {
-					value: jQuery.event.trigger(
-
-						// Support: IE <=9 - 11+
-						// Extend with the prototype to reset the above stopImmediatePropagation()
-						jQuery.extend( saved[ 0 ], jQuery.Event.prototype ),
-						saved.slice( 1 ),
-						this
-					)
-				} );
-
-				// Abort handling of the native event
-				event.stopImmediatePropagation();
-			}
-		}
-	} );
-}
-
-jQuery.removeEvent = function( elem, type, handle ) {
-
-	// This "if" is needed for plain objects
-	if ( elem.removeEventListener ) {
-		elem.removeEventListener( type, handle );
-	}
-};
-
-jQuery.Event = function( src, props ) {
-
-	// Allow instantiation without the 'new' keyword
-	if ( !( this instanceof jQuery.Event ) ) {
-		return new jQuery.Event( src, props );
-	}
-
-	// Event object
-	if ( src && src.type ) {
-		this.originalEvent = src;
-		this.type = src.type;
-
-		// Events bubbling up the document may have been marked as prevented
-		// by a handler lower down the tree; reflect the correct value.
-		this.isDefaultPrevented = src.defaultPrevented ||
-				src.defaultPrevented === undefined &&
-
-				// Support: Android <=2.3 only
-				src.returnValue === false ?
-			returnTrue :
-			returnFalse;
-
-		// Create target properties
-		// Support: Safari <=6 - 7 only
-		// Target should not be a text node (#504, #13143)
-		this.target = ( src.target && src.target.nodeType === 3 ) ?
-			src.target.parentNode :
-			src.target;
-
-		this.currentTarget = src.currentTarget;
-		this.relatedTarget = src.relatedTarget;
-
-	// Event type
-	} else {
-		this.type = src;
-	}
-
-	// Put explicitly provided properties onto the event object
-	if ( props ) {
-		jQuery.extend( this, props );
-	}
-
-	// Create a timestamp if incoming event doesn't have one
-	this.timeStamp = src && src.timeStamp || Date.now();
-
-	// Mark it as fixed
-	this[ jQuery.expando ] = true;
-};
-
-// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding
-// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html
-jQuery.Event.prototype = {
-	constructor: jQuery.Event,
-	isDefaultPrevented: returnFalse,
-	isPropagationStopped: returnFalse,
-	isImmediatePropagationStopped: returnFalse,
-	isSimulated: false,
-
-	preventDefault: function() {
-		var e = this.originalEvent;
-
-		this.isDefaultPrevented = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.preventDefault();
-		}
-	},
-	stopPropagation: function() {
-		var e = this.originalEvent;
-
-		this.isPropagationStopped = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.stopPropagation();
-		}
-	},
-	stopImmediatePropagation: function() {
-		var e = this.originalEvent;
-
-		this.isImmediatePropagationStopped = returnTrue;
-
-		if ( e && !this.isSimulated ) {
-			e.stopImmediatePropagation();
-		}
-
-		this.stopPropagation();
-	}
-};
-
-// Includes all common event props including KeyEvent and MouseEvent specific props
-jQuery.each( {
-	altKey: true,
-	bubbles: true,
-	cancelable: true,
-	changedTouches: true,
-	ctrlKey: true,
-	detail: true,
-	eventPhase: true,
-	metaKey: true,
-	pageX: true,
-	pageY: true,
-	shiftKey: true,
-	view: true,
-	"char": true,
-	code: true,
-	charCode: true,
-	key: true,
-	keyCode: true,
-	button: true,
-	buttons: true,
-	clientX: true,
-	clientY: true,
-	offsetX: true,
-	offsetY: true,
-	pointerId: true,
-	pointerType: true,
-	screenX: true,
-	screenY: true,
-	targetTouches: true,
-	toElement: true,
-	touches: true,
-
-	which: function( event ) {
-		var button = event.button;
-
-		// Add which for key events
-		if ( event.which == null && rkeyEvent.test( event.type ) ) {
-			return event.charCode != null ? event.charCode : event.keyCode;
-		}
-
-		// Add which for click: 1 === left; 2 === middle; 3 === right
-		if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) {
-			if ( button & 1 ) {
-				return 1;
-			}
-
-			if ( button & 2 ) {
-				return 3;
-			}
-
-			if ( button & 4 ) {
-				return 2;
-			}
-
-			return 0;
-		}
-
-		return event.which;
-	}
-}, jQuery.event.addProp );
-
-jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) {
-	jQuery.event.special[ type ] = {
-
-		// Utilize native event if possible so blur/focus sequence is correct
-		setup: function() {
-
-			// Claim the first handler
-			// dataPriv.set( this, "focus", ... )
-			// dataPriv.set( this, "blur", ... )
-			leverageNative( this, type, expectSync );
-
-			// Return false to allow normal processing in the caller
-			return false;
-		},
-		trigger: function() {
-
-			// Force setup before trigger
-			leverageNative( this, type );
-
-			// Return non-false to allow normal event-path propagation
-			return true;
-		},
-
-		delegateType: delegateType
-	};
-} );
-
-// Create mouseenter/leave events using mouseover/out and event-time checks
-// so that event delegation works in jQuery.
-// Do the same for pointerenter/pointerleave and pointerover/pointerout
-//
-// Support: Safari 7 only
-// Safari sends mouseenter too often; see:
-// https://bugs.chromium.org/p/chromium/issues/detail?id=470258
-// for the description of the bug (it existed in older Chrome versions as well).
-jQuery.each( {
-	mouseenter: "mouseover",
-	mouseleave: "mouseout",
-	pointerenter: "pointerover",
-	pointerleave: "pointerout"
-}, function( orig, fix ) {
-	jQuery.event.special[ orig ] = {
-		delegateType: fix,
-		bindType: fix,
-
-		handle: function( event ) {
-			var ret,
-				target = this,
-				related = event.relatedTarget,
-				handleObj = event.handleObj;
-
-			// For mouseenter/leave call the handler if related is outside the target.
-			// NB: No relatedTarget if the mouse left/entered the browser window
-			if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) {
-				event.type = handleObj.origType;
-				ret = handleObj.handler.apply( this, arguments );
-				event.type = fix;
-			}
-			return ret;
-		}
-	};
-} );
-
-jQuery.fn.extend( {
-
-	on: function( types, selector, data, fn ) {
-		return on( this, types, selector, data, fn );
-	},
-	one: function( types, selector, data, fn ) {
-		return on( this, types, selector, data, fn, 1 );
-	},
-	off: function( types, selector, fn ) {
-		var handleObj, type;
-		if ( types && types.preventDefault && types.handleObj ) {
-
-			// ( event )  dispatched jQuery.Event
-			handleObj = types.handleObj;
-			jQuery( types.delegateTarget ).off(
-				handleObj.namespace ?
-					handleObj.origType + "." + handleObj.namespace :
-					handleObj.origType,
-				handleObj.selector,
-				handleObj.handler
-			);
-			return this;
-		}
-		if ( typeof types === "object" ) {
-
-			// ( types-object [, selector] )
-			for ( type in types ) {
-				this.off( type, selector, types[ type ] );
-			}
-			return this;
-		}
-		if ( selector === false || typeof selector === "function" ) {
-
-			// ( types [, fn] )
-			fn = selector;
-			selector = undefined;
-		}
-		if ( fn === false ) {
-			fn = returnFalse;
-		}
-		return this.each( function() {
-			jQuery.event.remove( this, types, fn, selector );
-		} );
-	}
-} );
-
-
-var
-
-	// Support: IE <=10 - 11, Edge 12 - 13 only
-	// In IE/Edge using regex groups here causes severe slowdowns.
-	// See https://connect.microsoft.com/IE/feedback/details/1736512/
-	rnoInnerhtml = /<script|<style|<link/i,
-
-	// checked="checked" or checked
-	rchecked = /checked\s*(?:[^=]|=\s*.checked.)/i,
-	rcleanScript = /^\s*<!(?:\[CDATA\[|--)|(?:\]\]|--)>\s*$/g;
-
-// Prefer a tbody over its parent table for containing new rows
-function manipulationTarget( elem, content ) {
-	if ( nodeName( elem, "table" ) &&
-		nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) {
-
-		return jQuery( elem ).children( "tbody" )[ 0 ] || elem;
-	}
-
-	return elem;
-}
-
-// Replace/restore the type attribute of script elements for safe DOM manipulation
-function disableScript( elem ) {
-	elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type;
-	return elem;
-}
-function restoreScript( elem ) {
-	if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) {
-		elem.type = elem.type.slice( 5 );
-	} else {
-		elem.removeAttribute( "type" );
-	}
-
-	return elem;
-}
-
-function cloneCopyEvent( src, dest ) {
-	var i, l, type, pdataOld, udataOld, udataCur, events;
-
-	if ( dest.nodeType !== 1 ) {
-		return;
-	}
-
-	// 1. Copy private data: events, handlers, etc.
-	if ( dataPriv.hasData( src ) ) {
-		pdataOld = dataPriv.get( src );
-		events = pdataOld.events;
-
-		if ( events ) {
-			dataPriv.remove( dest, "handle events" );
-
-			for ( type in events ) {
-				for ( i = 0, l = events[ type ].length; i < l; i++ ) {
-					jQuery.event.add( dest, type, events[ type ][ i ] );
-				}
-			}
-		}
-	}
-
-	// 2. Copy user data
-	if ( dataUser.hasData( src ) ) {
-		udataOld = dataUser.access( src );
-		udataCur = jQuery.extend( {}, udataOld );
-
-		dataUser.set( dest, udataCur );
-	}
-}
-
-// Fix IE bugs, see support tests
-function fixInput( src, dest ) {
-	var nodeName = dest.nodeName.toLowerCase();
-
-	// Fails to persist the checked state of a cloned checkbox or radio button.
-	if ( nodeName === "input" && rcheckableType.test( src.type ) ) {
-		dest.checked = src.checked;
-
-	// Fails to return the selected option to the default selected state when cloning options
-	} else if ( nodeName === "input" || nodeName === "textarea" ) {
-		dest.defaultValue = src.defaultValue;
-	}
-}
-
-function domManip( collection, args, callback, ignored ) {
-
-	// Flatten any nested arrays
-	args = flat( args );
-
-	var fragment, first, scripts, hasScripts, node, doc,
-		i = 0,
-		l = collection.length,
-		iNoClone = l - 1,
-		value = args[ 0 ],
-		valueIsFunction = isFunction( value );
-
-	// We can't cloneNode fragments that contain checked, in WebKit
-	if ( valueIsFunction ||
-			( l > 1 && typeof value === "string" &&
-				!support.checkClone && rchecked.test( value ) ) ) {
-		return collection.each( function( index ) {
-			var self = collection.eq( index );
-			if ( valueIsFunction ) {
-				args[ 0 ] = value.call( this, index, self.html() );
-			}
-			domManip( self, args, callback, ignored );
-		} );
-	}
-
-	if ( l ) {
-		fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored );
-		first = fragment.firstChild;
-
-		if ( fragment.childNodes.length === 1 ) {
-			fragment = first;
-		}
-
-		// Require either new content or an interest in ignored elements to invoke the callback
-		if ( first || ignored ) {
-			scripts = jQuery.map( getAll( fragment, "script" ), disableScript );
-			hasScripts = scripts.length;
-
-			// Use the original fragment for the last item
-			// instead of the first because it can end up
-			// being emptied incorrectly in certain situations (#8070).
-			for ( ; i < l; i++ ) {
-				node = fragment;
-
-				if ( i !== iNoClone ) {
-					node = jQuery.clone( node, true, true );
-
-					// Keep references to cloned scripts for later restoration
-					if ( hasScripts ) {
-
-						// Support: Android <=4.0 only, PhantomJS 1 only
-						// push.apply(_, arraylike) throws on ancient WebKit
-						jQuery.merge( scripts, getAll( node, "script" ) );
-					}
-				}
-
-				callback.call( collection[ i ], node, i );
-			}
-
-			if ( hasScripts ) {
-				doc = scripts[ scripts.length - 1 ].ownerDocument;
-
-				// Reenable scripts
-				jQuery.map( scripts, restoreScript );
-
-				// Evaluate executable scripts on first document insertion
-				for ( i = 0; i < hasScripts; i++ ) {
-					node = scripts[ i ];
-					if ( rscriptType.test( node.type || "" ) &&
-						!dataPriv.access( node, "globalEval" ) &&
-						jQuery.contains( doc, node ) ) {
-
-						if ( node.src && ( node.type || "" ).toLowerCase()  !== "module" ) {
-
-							// Optional AJAX dependency, but won't run scripts if not present
-							if ( jQuery._evalUrl && !node.noModule ) {
-								jQuery._evalUrl( node.src, {
-									nonce: node.nonce || node.getAttribute( "nonce" )
-								}, doc );
-							}
-						} else {
-							DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc );
-						}
-					}
-				}
-			}
-		}
-	}
-
-	return collection;
-}
-
-function remove( elem, selector, keepData ) {
-	var node,
-		nodes = selector ? jQuery.filter( selector, elem ) : elem,
-		i = 0;
-
-	for ( ; ( node = nodes[ i ] ) != null; i++ ) {
-		if ( !keepData && node.nodeType === 1 ) {
-			jQuery.cleanData( getAll( node ) );
-		}
-
-		if ( node.parentNode ) {
-			if ( keepData && isAttached( node ) ) {
-				setGlobalEval( getAll( node, "script" ) );
-			}
-			node.parentNode.removeChild( node );
-		}
-	}
-
-	return elem;
-}
-
-jQuery.extend( {
-	htmlPrefilter: function( html ) {
-		return html;
-	},
-
-	clone: function( elem, dataAndEvents, deepDataAndEvents ) {
-		var i, l, srcElements, destElements,
-			clone = elem.cloneNode( true ),
-			inPage = isAttached( elem );
-
-		// Fix IE cloning issues
-		if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) &&
-				!jQuery.isXMLDoc( elem ) ) {
-
-			// We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2
-			destElements = getAll( clone );
-			srcElements = getAll( elem );
-
-			for ( i = 0, l = srcElements.length; i < l; i++ ) {
-				fixInput( srcElements[ i ], destElements[ i ] );
-			}
-		}
-
-		// Copy the events from the original to the clone
-		if ( dataAndEvents ) {
-			if ( deepDataAndEvents ) {
-				srcElements = srcElements || getAll( elem );
-				destElements = destElements || getAll( clone );
-
-				for ( i = 0, l = srcElements.length; i < l; i++ ) {
-					cloneCopyEvent( srcElements[ i ], destElements[ i ] );
-				}
-			} else {
-				cloneCopyEvent( elem, clone );
-			}
-		}
-
-		// Preserve script evaluation history
-		destElements = getAll( clone, "script" );
-		if ( destElements.length > 0 ) {
-			setGlobalEval( destElements, !inPage && getAll( elem, "script" ) );
-		}
-
-		// Return the cloned set
-		return clone;
-	},
-
-	cleanData: function( elems ) {
-		var data, elem, type,
-			special = jQuery.event.special,
-			i = 0;
-
-		for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) {
-			if ( acceptData( elem ) ) {
-				if ( ( data = elem[ dataPriv.expando ] ) ) {
-					if ( data.events ) {
-						for ( type in data.events ) {
-							if ( special[ type ] ) {
-								jQuery.event.remove( elem, type );
-
-							// This is a shortcut to avoid jQuery.event.remove's overhead
-							} else {
-								jQuery.removeEvent( elem, type, data.handle );
-							}
-						}
-					}
-
-					// Support: Chrome <=35 - 45+
-					// Assign undefined instead of using delete, see Data#remove
-					elem[ dataPriv.expando ] = undefined;
-				}
-				if ( elem[ dataUser.expando ] ) {
-
-					// Support: Chrome <=35 - 45+
-					// Assign undefined instead of using delete, see Data#remove
-					elem[ dataUser.expando ] = undefined;
-				}
-			}
-		}
-	}
-} );
-
-jQuery.fn.extend( {
-	detach: function( selector ) {
-		return remove( this, selector, true );
-	},
-
-	remove: function( selector ) {
-		return remove( this, selector );
-	},
-
-	text: function( value ) {
-		return access( this, function( value ) {
-			return value === undefined ?
-				jQuery.text( this ) :
-				this.empty().each( function() {
-					if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-						this.textContent = value;
-					}
-				} );
-		}, null, value, arguments.length );
-	},
-
-	append: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-				var target = manipulationTarget( this, elem );
-				target.appendChild( elem );
-			}
-		} );
-	},
-
-	prepend: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) {
-				var target = manipulationTarget( this, elem );
-				target.insertBefore( elem, target.firstChild );
-			}
-		} );
-	},
-
-	before: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.parentNode ) {
-				this.parentNode.insertBefore( elem, this );
-			}
-		} );
-	},
-
-	after: function() {
-		return domManip( this, arguments, function( elem ) {
-			if ( this.parentNode ) {
-				this.parentNode.insertBefore( elem, this.nextSibling );
-			}
-		} );
-	},
-
-	empty: function() {
-		var elem,
-			i = 0;
-
-		for ( ; ( elem = this[ i ] ) != null; i++ ) {
-			if ( elem.nodeType === 1 ) {
-
-				// Prevent memory leaks
-				jQuery.cleanData( getAll( elem, false ) );
-
-				// Remove any remaining nodes
-				elem.textContent = "";
-			}
-		}
-
-		return this;
-	},
-
-	clone: function( dataAndEvents, deepDataAndEvents ) {
-		dataAndEvents = dataAndEvents == null ? false : dataAndEvents;
-		deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents;
-
-		return this.map( function() {
-			return jQuery.clone( this, dataAndEvents, deepDataAndEvents );
-		} );
-	},
-
-	html: function( value ) {
-		return access( this, function( value ) {
-			var elem = this[ 0 ] || {},
-				i = 0,
-				l = this.length;
-
-			if ( value === undefined && elem.nodeType === 1 ) {
-				return elem.innerHTML;
-			}
-
-			// See if we can take a shortcut and just use innerHTML
-			if ( typeof value === "string" && !rnoInnerhtml.test( value ) &&
-				!wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) {
-
-				value = jQuery.htmlPrefilter( value );
-
-				try {
-					for ( ; i < l; i++ ) {
-						elem = this[ i ] || {};
-
-						// Remove element nodes and prevent memory leaks
-						if ( elem.nodeType === 1 ) {
-							jQuery.cleanData( getAll( elem, false ) );
-							elem.innerHTML = value;
-						}
-					}
-
-					elem = 0;
-
-				// If using innerHTML throws an exception, use the fallback method
-				} catch ( e ) {}
-			}
-
-			if ( elem ) {
-				this.empty().append( value );
-			}
-		}, null, value, arguments.length );
-	},
-
-	replaceWith: function() {
-		var ignored = [];
-
-		// Make the changes, replacing each non-ignored context element with the new content
-		return domManip( this, arguments, function( elem ) {
-			var parent = this.parentNode;
-
-			if ( jQuery.inArray( this, ignored ) < 0 ) {
-				jQuery.cleanData( getAll( this ) );
-				if ( parent ) {
-					parent.replaceChild( elem, this );
-				}
-			}
-
-		// Force callback invocation
-		}, ignored );
-	}
-} );
-
-jQuery.each( {
-	appendTo: "append",
-	prependTo: "prepend",
-	insertBefore: "before",
-	insertAfter: "after",
-	replaceAll: "replaceWith"
-}, function( name, original ) {
-	jQuery.fn[ name ] = function( selector ) {
-		var elems,
-			ret = [],
-			insert = jQuery( selector ),
-			last = insert.length - 1,
-			i = 0;
-
-		for ( ; i <= last; i++ ) {
-			elems = i === last ? this : this.clone( true );
-			jQuery( insert[ i ] )[ original ]( elems );
-
-			// Support: Android <=4.0 only, PhantomJS 1 only
-			// .get() because push.apply(_, arraylike) throws on ancient WebKit
-			push.apply( ret, elems.get() );
-		}
-
-		return this.pushStack( ret );
-	};
-} );
-var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" );
-
-var getStyles = function( elem ) {
-
-		// Support: IE <=11 only, Firefox <=30 (#15098, #14150)
-		// IE throws on elements created in popups
-		// FF meanwhile throws on frame elements through "defaultView.getComputedStyle"
-		var view = elem.ownerDocument.defaultView;
-
-		if ( !view || !view.opener ) {
-			view = window;
-		}
-
-		return view.getComputedStyle( elem );
-	};
-
-var swap = function( elem, options, callback ) {
-	var ret, name,
-		old = {};
-
-	// Remember the old values, and insert the new ones
-	for ( name in options ) {
-		old[ name ] = elem.style[ name ];
-		elem.style[ name ] = options[ name ];
-	}
-
-	ret = callback.call( elem );
-
-	// Revert the old values
-	for ( name in options ) {
-		elem.style[ name ] = old[ name ];
-	}
-
-	return ret;
-};
-
-
-var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" );
-
-
-
-( function() {
-
-	// Executing both pixelPosition & boxSizingReliable tests require only one layout
-	// so they're executed at the same time to save the second computation.
-	function computeStyleTests() {
-
-		// This is a singleton, we need to execute it only once
-		if ( !div ) {
-			return;
-		}
-
-		container.style.cssText = "position:absolute;left:-11111px;width:60px;" +
-			"margin-top:1px;padding:0;border:0";
-		div.style.cssText =
-			"position:relative;display:block;box-sizing:border-box;overflow:scroll;" +
-			"margin:auto;border:1px;padding:1px;" +
-			"width:60%;top:1%";
-		documentElement.appendChild( container ).appendChild( div );
-
-		var divStyle = window.getComputedStyle( div );
-		pixelPositionVal = divStyle.top !== "1%";
-
-		// Support: Android 4.0 - 4.3 only, Firefox <=3 - 44
-		reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12;
-
-		// Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3
-		// Some styles come back with percentage values, even though they shouldn't
-		div.style.right = "60%";
-		pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36;
-
-		// Support: IE 9 - 11 only
-		// Detect misreporting of content dimensions for box-sizing:border-box elements
-		boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36;
-
-		// Support: IE 9 only
-		// Detect overflow:scroll screwiness (gh-3699)
-		// Support: Chrome <=64
-		// Don't get tricked when zoom affects offsetWidth (gh-4029)
-		div.style.position = "absolute";
-		scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12;
-
-		documentElement.removeChild( container );
-
-		// Nullify the div so it wouldn't be stored in the memory and
-		// it will also be a sign that checks already performed
-		div = null;
-	}
-
-	function roundPixelMeasures( measure ) {
-		return Math.round( parseFloat( measure ) );
-	}
-
-	var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal,
-		reliableTrDimensionsVal, reliableMarginLeftVal,
-		container = document.createElement( "div" ),
-		div = document.createElement( "div" );
-
-	// Finish early in limited (non-browser) environments
-	if ( !div.style ) {
-		return;
-	}
-
-	// Support: IE <=9 - 11 only
-	// Style of cloned element affects source element cloned (#8908)
-	div.style.backgroundClip = "content-box";
-	div.cloneNode( true ).style.backgroundClip = "";
-	support.clearCloneStyle = div.style.backgroundClip === "content-box";
-
-	jQuery.extend( support, {
-		boxSizingReliable: function() {
-			computeStyleTests();
-			return boxSizingReliableVal;
-		},
-		pixelBoxStyles: function() {
-			computeStyleTests();
-			return pixelBoxStylesVal;
-		},
-		pixelPosition: function() {
-			computeStyleTests();
-			return pixelPositionVal;
-		},
-		reliableMarginLeft: function() {
-			computeStyleTests();
-			return reliableMarginLeftVal;
-		},
-		scrollboxSize: function() {
-			computeStyleTests();
-			return scrollboxSizeVal;
-		},
-
-		// Support: IE 9 - 11+, Edge 15 - 18+
-		// IE/Edge misreport `getComputedStyle` of table rows with width/height
-		// set in CSS while `offset*` properties report correct values.
-		// Behavior in IE 9 is more subtle than in newer versions & it passes
-		// some versions of this test; make sure not to make it pass there!
-		reliableTrDimensions: function() {
-			var table, tr, trChild, trStyle;
-			if ( reliableTrDimensionsVal == null ) {
-				table = document.createElement( "table" );
-				tr = document.createElement( "tr" );
-				trChild = document.createElement( "div" );
-
-				table.style.cssText = "position:absolute;left:-11111px";
-				tr.style.height = "1px";
-				trChild.style.height = "9px";
-
-				documentElement
-					.appendChild( table )
-					.appendChild( tr )
-					.appendChild( trChild );
-
-				trStyle = window.getComputedStyle( tr );
-				reliableTrDimensionsVal = parseInt( trStyle.height ) > 3;
-
-				documentElement.removeChild( table );
-			}
-			return reliableTrDimensionsVal;
-		}
-	} );
-} )();
-
-
-function curCSS( elem, name, computed ) {
-	var width, minWidth, maxWidth, ret,
-
-		// Support: Firefox 51+
-		// Retrieving style before computed somehow
-		// fixes an issue with getting wrong values
-		// on detached elements
-		style = elem.style;
-
-	computed = computed || getStyles( elem );
-
-	// getPropertyValue is needed for:
-	//   .css('filter') (IE 9 only, #12537)
-	//   .css('--customProperty) (#3144)
-	if ( computed ) {
-		ret = computed.getPropertyValue( name ) || computed[ name ];
-
-		if ( ret === "" && !isAttached( elem ) ) {
-			ret = jQuery.style( elem, name );
-		}
-
-		// A tribute to the "awesome hack by Dean Edwards"
-		// Android Browser returns percentage for some values,
-		// but width seems to be reliably pixels.
-		// This is against the CSSOM draft spec:
-		// https://drafts.csswg.org/cssom/#resolved-values
-		if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) {
-
-			// Remember the original values
-			width = style.width;
-			minWidth = style.minWidth;
-			maxWidth = style.maxWidth;
-
-			// Put in the new values to get a computed value out
-			style.minWidth = style.maxWidth = style.width = ret;
-			ret = computed.width;
-
-			// Revert the changed values
-			style.width = width;
-			style.minWidth = minWidth;
-			style.maxWidth = maxWidth;
-		}
-	}
-
-	return ret !== undefined ?
-
-		// Support: IE <=9 - 11 only
-		// IE returns zIndex value as an integer.
-		ret + "" :
-		ret;
-}
-
-
-function addGetHookIf( conditionFn, hookFn ) {
-
-	// Define the hook, we'll check on the first run if it's really needed.
-	return {
-		get: function() {
-			if ( conditionFn() ) {
-
-				// Hook not needed (or it's not possible to use it due
-				// to missing dependency), remove it.
-				delete this.get;
-				return;
-			}
-
-			// Hook needed; redefine it so that the support test is not executed again.
-			return ( this.get = hookFn ).apply( this, arguments );
-		}
-	};
-}
-
-
-var cssPrefixes = [ "Webkit", "Moz", "ms" ],
-	emptyStyle = document.createElement( "div" ).style,
-	vendorProps = {};
-
-// Return a vendor-prefixed property or undefined
-function vendorPropName( name ) {
-
-	// Check for vendor prefixed names
-	var capName = name[ 0 ].toUpperCase() + name.slice( 1 ),
-		i = cssPrefixes.length;
-
-	while ( i-- ) {
-		name = cssPrefixes[ i ] + capName;
-		if ( name in emptyStyle ) {
-			return name;
-		}
-	}
-}
-
-// Return a potentially-mapped jQuery.cssProps or vendor prefixed property
-function finalPropName( name ) {
-	var final = jQuery.cssProps[ name ] || vendorProps[ name ];
-
-	if ( final ) {
-		return final;
-	}
-	if ( name in emptyStyle ) {
-		return name;
-	}
-	return vendorProps[ name ] = vendorPropName( name ) || name;
-}
-
-
-var
-
-	// Swappable if display is none or starts with table
-	// except "table", "table-cell", or "table-caption"
-	// See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display
-	rdisplayswap = /^(none|table(?!-c[ea]).+)/,
-	rcustomProp = /^--/,
-	cssShow = { position: "absolute", visibility: "hidden", display: "block" },
-	cssNormalTransform = {
-		letterSpacing: "0",
-		fontWeight: "400"
-	};
-
-function setPositiveNumber( _elem, value, subtract ) {
-
-	// Any relative (+/-) values have already been
-	// normalized at this point
-	var matches = rcssNum.exec( value );
-	return matches ?
-
-		// Guard against undefined "subtract", e.g., when used as in cssHooks
-		Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) :
-		value;
-}
-
-function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) {
-	var i = dimension === "width" ? 1 : 0,
-		extra = 0,
-		delta = 0;
-
-	// Adjustment may not be necessary
-	if ( box === ( isBorderBox ? "border" : "content" ) ) {
-		return 0;
-	}
-
-	for ( ; i < 4; i += 2 ) {
-
-		// Both box models exclude margin
-		if ( box === "margin" ) {
-			delta += jQuery.css( elem, box + cssExpand[ i ], true, styles );
-		}
-
-		// If we get here with a content-box, we're seeking "padding" or "border" or "margin"
-		if ( !isBorderBox ) {
-
-			// Add padding
-			delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles );
-
-			// For "border" or "margin", add border
-			if ( box !== "padding" ) {
-				delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-
-			// But still keep track of it otherwise
-			} else {
-				extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-			}
-
-		// If we get here with a border-box (content + padding + border), we're seeking "content" or
-		// "padding" or "margin"
-		} else {
-
-			// For "content", subtract padding
-			if ( box === "content" ) {
-				delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles );
-			}
-
-			// For "content" or "padding", subtract border
-			if ( box !== "margin" ) {
-				delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles );
-			}
-		}
-	}
-
-	// Account for positive content-box scroll gutter when requested by providing computedVal
-	if ( !isBorderBox && computedVal >= 0 ) {
-
-		// offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border
-		// Assuming integer scroll gutter, subtract the rest and round down
-		delta += Math.max( 0, Math.ceil(
-			elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] -
-			computedVal -
-			delta -
-			extra -
-			0.5
-
-		// If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter
-		// Use an explicit zero to avoid NaN (gh-3964)
-		) ) || 0;
-	}
-
-	return delta;
-}
-
-function getWidthOrHeight( elem, dimension, extra ) {
-
-	// Start with computed style
-	var styles = getStyles( elem ),
-
-		// To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322).
-		// Fake content-box until we know it's needed to know the true value.
-		boxSizingNeeded = !support.boxSizingReliable() || extra,
-		isBorderBox = boxSizingNeeded &&
-			jQuery.css( elem, "boxSizing", false, styles ) === "border-box",
-		valueIsBorderBox = isBorderBox,
-
-		val = curCSS( elem, dimension, styles ),
-		offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 );
-
-	// Support: Firefox <=54
-	// Return a confounding non-pixel value or feign ignorance, as appropriate.
-	if ( rnumnonpx.test( val ) ) {
-		if ( !extra ) {
-			return val;
-		}
-		val = "auto";
-	}
-
-
-	// Support: IE 9 - 11 only
-	// Use offsetWidth/offsetHeight for when box sizing is unreliable.
-	// In those cases, the computed value can be trusted to be border-box.
-	if ( ( !support.boxSizingReliable() && isBorderBox ||
-
-		// Support: IE 10 - 11+, Edge 15 - 18+
-		// IE/Edge misreport `getComputedStyle` of table rows with width/height
-		// set in CSS while `offset*` properties report correct values.
-		// Interestingly, in some cases IE 9 doesn't suffer from this issue.
-		!support.reliableTrDimensions() && nodeName( elem, "tr" ) ||
-
-		// Fall back to offsetWidth/offsetHeight when value is "auto"
-		// This happens for inline elements with no explicit setting (gh-3571)
-		val === "auto" ||
-
-		// Support: Android <=4.1 - 4.3 only
-		// Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602)
-		!parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) &&
-
-		// Make sure the element is visible & connected
-		elem.getClientRects().length ) {
-
-		isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box";
-
-		// Where available, offsetWidth/offsetHeight approximate border box dimensions.
-		// Where not available (e.g., SVG), assume unreliable box-sizing and interpret the
-		// retrieved value as a content box dimension.
-		valueIsBorderBox = offsetProp in elem;
-		if ( valueIsBorderBox ) {
-			val = elem[ offsetProp ];
-		}
-	}
-
-	// Normalize "" and auto
-	val = parseFloat( val ) || 0;
-
-	// Adjust for the element's box model
-	return ( val +
-		boxModelAdjustment(
-			elem,
-			dimension,
-			extra || ( isBorderBox ? "border" : "content" ),
-			valueIsBorderBox,
-			styles,
-
-			// Provide the current computed size to request scroll gutter calculation (gh-3589)
-			val
-		)
-	) + "px";
-}
-
-jQuery.extend( {
-
-	// Add in style property hooks for overriding the default
-	// behavior of getting and setting a style property
-	cssHooks: {
-		opacity: {
-			get: function( elem, computed ) {
-				if ( computed ) {
-
-					// We should always get a number back from opacity
-					var ret = curCSS( elem, "opacity" );
-					return ret === "" ? "1" : ret;
-				}
-			}
-		}
-	},
-
-	// Don't automatically add "px" to these possibly-unitless properties
-	cssNumber: {
-		"animationIterationCount": true,
-		"columnCount": true,
-		"fillOpacity": true,
-		"flexGrow": true,
-		"flexShrink": true,
-		"fontWeight": true,
-		"gridArea": true,
-		"gridColumn": true,
-		"gridColumnEnd": true,
-		"gridColumnStart": true,
-		"gridRow": true,
-		"gridRowEnd": true,
-		"gridRowStart": true,
-		"lineHeight": true,
-		"opacity": true,
-		"order": true,
-		"orphans": true,
-		"widows": true,
-		"zIndex": true,
-		"zoom": true
-	},
-
-	// Add in properties whose names you wish to fix before
-	// setting or getting the value
-	cssProps: {},
-
-	// Get and set the style property on a DOM Node
-	style: function( elem, name, value, extra ) {
-
-		// Don't set styles on text and comment nodes
-		if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) {
-			return;
-		}
-
-		// Make sure that we're working with the right name
-		var ret, type, hooks,
-			origName = camelCase( name ),
-			isCustomProp = rcustomProp.test( name ),
-			style = elem.style;
-
-		// Make sure that we're working with the right name. We don't
-		// want to query the value if it is a CSS custom property
-		// since they are user-defined.
-		if ( !isCustomProp ) {
-			name = finalPropName( origName );
-		}
-
-		// Gets hook for the prefixed version, then unprefixed version
-		hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ];
-
-		// Check if we're setting a value
-		if ( value !== undefined ) {
-			type = typeof value;
-
-			// Convert "+=" or "-=" to relative numbers (#7345)
-			if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) {
-				value = adjustCSS( elem, name, ret );
-
-				// Fixes bug #9237
-				type = "number";
-			}
-
-			// Make sure that null and NaN values aren't set (#7116)
-			if ( value == null || value !== value ) {
-				return;
-			}
-
-			// If a number was passed in, add the unit (except for certain CSS properties)
-			// The isCustomProp check can be removed in jQuery 4.0 when we only auto-append
-			// "px" to a few hardcoded values.
-			if ( type === "number" && !isCustomProp ) {
-				value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" );
-			}
-
-			// background-* props affect original clone's values
-			if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) {
-				style[ name ] = "inherit";
-			}
-
-			// If a hook was provided, use that value, otherwise just set the specified value
-			if ( !hooks || !( "set" in hooks ) ||
-				( value = hooks.set( elem, value, extra ) ) !== undefined ) {
-
-				if ( isCustomProp ) {
-					style.setProperty( name, value );
-				} else {
-					style[ name ] = value;
-				}
-			}
-
-		} else {
-
-			// If a hook was provided get the non-computed value from there
-			if ( hooks && "get" in hooks &&
-				( ret = hooks.get( elem, false, extra ) ) !== undefined ) {
-
-				return ret;
-			}
-
-			// Otherwise just get the value from the style object
-			return style[ name ];
-		}
-	},
-
-	css: function( elem, name, extra, styles ) {
-		var val, num, hooks,
-			origName = camelCase( name ),
-			isCustomProp = rcustomProp.test( name );
-
-		// Make sure that we're working with the right name. We don't
-		// want to modify the value if it is a CSS custom property
-		// since they are user-defined.
-		if ( !isCustomProp ) {
-			name = finalPropName( origName );
-		}
-
-		// Try prefixed name followed by the unprefixed name
-		hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ];
-
-		// If a hook was provided get the computed value from there
-		if ( hooks && "get" in hooks ) {
-			val = hooks.get( elem, true, extra );
-		}
-
-		// Otherwise, if a way to get the computed value exists, use that
-		if ( val === undefined ) {
-			val = curCSS( elem, name, styles );
-		}
-
-		// Convert "normal" to computed value
-		if ( val === "normal" && name in cssNormalTransform ) {
-			val = cssNormalTransform[ name ];
-		}
-
-		// Make numeric if forced or a qualifier was provided and val looks numeric
-		if ( extra === "" || extra ) {
-			num = parseFloat( val );
-			return extra === true || isFinite( num ) ? num || 0 : val;
-		}
-
-		return val;
-	}
-} );
-
-jQuery.each( [ "height", "width" ], function( _i, dimension ) {
-	jQuery.cssHooks[ dimension ] = {
-		get: function( elem, computed, extra ) {
-			if ( computed ) {
-
-				// Certain elements can have dimension info if we invisibly show them
-				// but it must have a current display style that would benefit
-				return rdisplayswap.test( jQuery.css( elem, "display" ) ) &&
-
-					// Support: Safari 8+
-					// Table columns in Safari have non-zero offsetWidth & zero
-					// getBoundingClientRect().width unless display is changed.
-					// Support: IE <=11 only
-					// Running getBoundingClientRect on a disconnected node
-					// in IE throws an error.
-					( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ?
-						swap( elem, cssShow, function() {
-							return getWidthOrHeight( elem, dimension, extra );
-						} ) :
-						getWidthOrHeight( elem, dimension, extra );
-			}
-		},
-
-		set: function( elem, value, extra ) {
-			var matches,
-				styles = getStyles( elem ),
-
-				// Only read styles.position if the test has a chance to fail
-				// to avoid forcing a reflow.
-				scrollboxSizeBuggy = !support.scrollboxSize() &&
-					styles.position === "absolute",
-
-				// To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991)
-				boxSizingNeeded = scrollboxSizeBuggy || extra,
-				isBorderBox = boxSizingNeeded &&
-					jQuery.css( elem, "boxSizing", false, styles ) === "border-box",
-				subtract = extra ?
-					boxModelAdjustment(
-						elem,
-						dimension,
-						extra,
-						isBorderBox,
-						styles
-					) :
-					0;
-
-			// Account for unreliable border-box dimensions by comparing offset* to computed and
-			// faking a content-box to get border and padding (gh-3699)
-			if ( isBorderBox && scrollboxSizeBuggy ) {
-				subtract -= Math.ceil(
-					elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] -
-					parseFloat( styles[ dimension ] ) -
-					boxModelAdjustment( elem, dimension, "border", false, styles ) -
-					0.5
-				);
-			}
-
-			// Convert to pixels if value adjustment is needed
-			if ( subtract && ( matches = rcssNum.exec( value ) ) &&
-				( matches[ 3 ] || "px" ) !== "px" ) {
-
-				elem.style[ dimension ] = value;
-				value = jQuery.css( elem, dimension );
-			}
-
-			return setPositiveNumber( elem, value, subtract );
-		}
-	};
-} );
-
-jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft,
-	function( elem, computed ) {
-		if ( computed ) {
-			return ( parseFloat( curCSS( elem, "marginLeft" ) ) ||
-				elem.getBoundingClientRect().left -
-					swap( elem, { marginLeft: 0 }, function() {
-						return elem.getBoundingClientRect().left;
-					} )
-				) + "px";
-		}
-	}
-);
-
-// These hooks are used by animate to expand properties
-jQuery.each( {
-	margin: "",
-	padding: "",
-	border: "Width"
-}, function( prefix, suffix ) {
-	jQuery.cssHooks[ prefix + suffix ] = {
-		expand: function( value ) {
-			var i = 0,
-				expanded = {},
-
-				// Assumes a single number if not a string
-				parts = typeof value === "string" ? value.split( " " ) : [ value ];
-
-			for ( ; i < 4; i++ ) {
-				expanded[ prefix + cssExpand[ i ] + suffix ] =
-					parts[ i ] || parts[ i - 2 ] || parts[ 0 ];
-			}
-
-			return expanded;
-		}
-	};
-
-	if ( prefix !== "margin" ) {
-		jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber;
-	}
-} );
-
-jQuery.fn.extend( {
-	css: function( name, value ) {
-		return access( this, function( elem, name, value ) {
-			var styles, len,
-				map = {},
-				i = 0;
-
-			if ( Array.isArray( name ) ) {
-				styles = getStyles( elem );
-				len = name.length;
-
-				for ( ; i < len; i++ ) {
-					map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles );
-				}
-
-				return map;
-			}
-
-			return value !== undefined ?
-				jQuery.style( elem, name, value ) :
-				jQuery.css( elem, name );
-		}, name, value, arguments.length > 1 );
-	}
-} );
-
-
-function Tween( elem, options, prop, end, easing ) {
-	return new Tween.prototype.init( elem, options, prop, end, easing );
-}
-jQuery.Tween = Tween;
-
-Tween.prototype = {
-	constructor: Tween,
-	init: function( elem, options, prop, end, easing, unit ) {
-		this.elem = elem;
-		this.prop = prop;
-		this.easing = easing || jQuery.easing._default;
-		this.options = options;
-		this.start = this.now = this.cur();
-		this.end = end;
-		this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" );
-	},
-	cur: function() {
-		var hooks = Tween.propHooks[ this.prop ];
-
-		return hooks && hooks.get ?
-			hooks.get( this ) :
-			Tween.propHooks._default.get( this );
-	},
-	run: function( percent ) {
-		var eased,
-			hooks = Tween.propHooks[ this.prop ];
-
-		if ( this.options.duration ) {
-			this.pos = eased = jQuery.easing[ this.easing ](
-				percent, this.options.duration * percent, 0, 1, this.options.duration
-			);
-		} else {
-			this.pos = eased = percent;
-		}
-		this.now = ( this.end - this.start ) * eased + this.start;
-
-		if ( this.options.step ) {
-			this.options.step.call( this.elem, this.now, this );
-		}
-
-		if ( hooks && hooks.set ) {
-			hooks.set( this );
-		} else {
-			Tween.propHooks._default.set( this );
-		}
-		return this;
-	}
-};
-
-Tween.prototype.init.prototype = Tween.prototype;
-
-Tween.propHooks = {
-	_default: {
-		get: function( tween ) {
-			var result;
-
-			// Use a property on the element directly when it is not a DOM element,
-			// or when there is no matching style property that exists.
-			if ( tween.elem.nodeType !== 1 ||
-				tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) {
-				return tween.elem[ tween.prop ];
-			}
-
-			// Passing an empty string as a 3rd parameter to .css will automatically
-			// attempt a parseFloat and fallback to a string if the parse fails.
-			// Simple values such as "10px" are parsed to Float;
-			// complex values such as "rotate(1rad)" are returned as-is.
-			result = jQuery.css( tween.elem, tween.prop, "" );
-
-			// Empty strings, null, undefined and "auto" are converted to 0.
-			return !result || result === "auto" ? 0 : result;
-		},
-		set: function( tween ) {
-
-			// Use step hook for back compat.
-			// Use cssHook if its there.
-			// Use .style if available and use plain properties where available.
-			if ( jQuery.fx.step[ tween.prop ] ) {
-				jQuery.fx.step[ tween.prop ]( tween );
-			} else if ( tween.elem.nodeType === 1 && (
-					jQuery.cssHooks[ tween.prop ] ||
-					tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) {
-				jQuery.style( tween.elem, tween.prop, tween.now + tween.unit );
-			} else {
-				tween.elem[ tween.prop ] = tween.now;
-			}
-		}
-	}
-};
-
-// Support: IE <=9 only
-// Panic based approach to setting things on disconnected nodes
-Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = {
-	set: function( tween ) {
-		if ( tween.elem.nodeType && tween.elem.parentNode ) {
-			tween.elem[ tween.prop ] = tween.now;
-		}
-	}
-};
-
-jQuery.easing = {
-	linear: function( p ) {
-		return p;
-	},
-	swing: function( p ) {
-		return 0.5 - Math.cos( p * Math.PI ) / 2;
-	},
-	_default: "swing"
-};
-
-jQuery.fx = Tween.prototype.init;
-
-// Back compat <1.8 extension point
-jQuery.fx.step = {};
-
-
-
-
-var
-	fxNow, inProgress,
-	rfxtypes = /^(?:toggle|show|hide)$/,
-	rrun = /queueHooks$/;
-
-function schedule() {
-	if ( inProgress ) {
-		if ( document.hidden === false && window.requestAnimationFrame ) {
-			window.requestAnimationFrame( schedule );
-		} else {
-			window.setTimeout( schedule, jQuery.fx.interval );
-		}
-
-		jQuery.fx.tick();
-	}
-}
-
-// Animations created synchronously will run synchronously
-function createFxNow() {
-	window.setTimeout( function() {
-		fxNow = undefined;
-	} );
-	return ( fxNow = Date.now() );
-}
-
-// Generate parameters to create a standard animation
-function genFx( type, includeWidth ) {
-	var which,
-		i = 0,
-		attrs = { height: type };
-
-	// If we include width, step value is 1 to do all cssExpand values,
-	// otherwise step value is 2 to skip over Left and Right
-	includeWidth = includeWidth ? 1 : 0;
-	for ( ; i < 4; i += 2 - includeWidth ) {
-		which = cssExpand[ i ];
-		attrs[ "margin" + which ] = attrs[ "padding" + which ] = type;
-	}
-
-	if ( includeWidth ) {
-		attrs.opacity = attrs.width = type;
-	}
-
-	return attrs;
-}
-
-function createTween( value, prop, animation ) {
-	var tween,
-		collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ),
-		index = 0,
-		length = collection.length;
-	for ( ; index < length; index++ ) {
-		if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) {
-
-			// We're done with this property
-			return tween;
-		}
-	}
-}
-
-function defaultPrefilter( elem, props, opts ) {
-	var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display,
-		isBox = "width" in props || "height" in props,
-		anim = this,
-		orig = {},
-		style = elem.style,
-		hidden = elem.nodeType && isHiddenWithinTree( elem ),
-		dataShow = dataPriv.get( elem, "fxshow" );
-
-	// Queue-skipping animations hijack the fx hooks
-	if ( !opts.queue ) {
-		hooks = jQuery._queueHooks( elem, "fx" );
-		if ( hooks.unqueued == null ) {
-			hooks.unqueued = 0;
-			oldfire = hooks.empty.fire;
-			hooks.empty.fire = function() {
-				if ( !hooks.unqueued ) {
-					oldfire();
-				}
-			};
-		}
-		hooks.unqueued++;
-
-		anim.always( function() {
-
-			// Ensure the complete handler is called before this completes
-			anim.always( function() {
-				hooks.unqueued--;
-				if ( !jQuery.queue( elem, "fx" ).length ) {
-					hooks.empty.fire();
-				}
-			} );
-		} );
-	}
-
-	// Detect show/hide animations
-	for ( prop in props ) {
-		value = props[ prop ];
-		if ( rfxtypes.test( value ) ) {
-			delete props[ prop ];
-			toggle = toggle || value === "toggle";
-			if ( value === ( hidden ? "hide" : "show" ) ) {
-
-				// Pretend to be hidden if this is a "show" and
-				// there is still data from a stopped show/hide
-				if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) {
-					hidden = true;
-
-				// Ignore all other no-op show/hide data
-				} else {
-					continue;
-				}
-			}
-			orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop );
-		}
-	}
-
-	// Bail out if this is a no-op like .hide().hide()
-	propTween = !jQuery.isEmptyObject( props );
-	if ( !propTween && jQuery.isEmptyObject( orig ) ) {
-		return;
-	}
-
-	// Restrict "overflow" and "display" styles during box animations
-	if ( isBox && elem.nodeType === 1 ) {
-
-		// Support: IE <=9 - 11, Edge 12 - 15
-		// Record all 3 overflow attributes because IE does not infer the shorthand
-		// from identically-valued overflowX and overflowY and Edge just mirrors
-		// the overflowX value there.
-		opts.overflow = [ style.overflow, style.overflowX, style.overflowY ];
-
-		// Identify a display type, preferring old show/hide data over the CSS cascade
-		restoreDisplay = dataShow && dataShow.display;
-		if ( restoreDisplay == null ) {
-			restoreDisplay = dataPriv.get( elem, "display" );
-		}
-		display = jQuery.css( elem, "display" );
-		if ( display === "none" ) {
-			if ( restoreDisplay ) {
-				display = restoreDisplay;
-			} else {
-
-				// Get nonempty value(s) by temporarily forcing visibility
-				showHide( [ elem ], true );
-				restoreDisplay = elem.style.display || restoreDisplay;
-				display = jQuery.css( elem, "display" );
-				showHide( [ elem ] );
-			}
-		}
-
-		// Animate inline elements as inline-block
-		if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) {
-			if ( jQuery.css( elem, "float" ) === "none" ) {
-
-				// Restore the original display value at the end of pure show/hide animations
-				if ( !propTween ) {
-					anim.done( function() {
-						style.display = restoreDisplay;
-					} );
-					if ( restoreDisplay == null ) {
-						display = style.display;
-						restoreDisplay = display === "none" ? "" : display;
-					}
-				}
-				style.display = "inline-block";
-			}
-		}
-	}
-
-	if ( opts.overflow ) {
-		style.overflow = "hidden";
-		anim.always( function() {
-			style.overflow = opts.overflow[ 0 ];
-			style.overflowX = opts.overflow[ 1 ];
-			style.overflowY = opts.overflow[ 2 ];
-		} );
-	}
-
-	// Implement show/hide animations
-	propTween = false;
-	for ( prop in orig ) {
-
-		// General show/hide setup for this element animation
-		if ( !propTween ) {
-			if ( dataShow ) {
-				if ( "hidden" in dataShow ) {
-					hidden = dataShow.hidden;
-				}
-			} else {
-				dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } );
-			}
-
-			// Store hidden/visible for toggle so `.stop().toggle()` "reverses"
-			if ( toggle ) {
-				dataShow.hidden = !hidden;
-			}
-
-			// Show elements before animating them
-			if ( hidden ) {
-				showHide( [ elem ], true );
-			}
-
-			/* eslint-disable no-loop-func */
-
-			anim.done( function() {
-
-			/* eslint-enable no-loop-func */
-
-				// The final step of a "hide" animation is actually hiding the element
-				if ( !hidden ) {
-					showHide( [ elem ] );
-				}
-				dataPriv.remove( elem, "fxshow" );
-				for ( prop in orig ) {
-					jQuery.style( elem, prop, orig[ prop ] );
-				}
-			} );
-		}
-
-		// Per-property setup
-		propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim );
-		if ( !( prop in dataShow ) ) {
-			dataShow[ prop ] = propTween.start;
-			if ( hidden ) {
-				propTween.end = propTween.start;
-				propTween.start = 0;
-			}
-		}
-	}
-}
-
-function propFilter( props, specialEasing ) {
-	var index, name, easing, value, hooks;
-
-	// camelCase, specialEasing and expand cssHook pass
-	for ( index in props ) {
-		name = camelCase( index );
-		easing = specialEasing[ name ];
-		value = props[ index ];
-		if ( Array.isArray( value ) ) {
-			easing = value[ 1 ];
-			value = props[ index ] = value[ 0 ];
-		}
-
-		if ( index !== name ) {
-			props[ name ] = value;
-			delete props[ index ];
-		}
-
-		hooks = jQuery.cssHooks[ name ];
-		if ( hooks && "expand" in hooks ) {
-			value = hooks.expand( value );
-			delete props[ name ];
-
-			// Not quite $.extend, this won't overwrite existing keys.
-			// Reusing 'index' because we have the correct "name"
-			for ( index in value ) {
-				if ( !( index in props ) ) {
-					props[ index ] = value[ index ];
-					specialEasing[ index ] = easing;
-				}
-			}
-		} else {
-			specialEasing[ name ] = easing;
-		}
-	}
-}
-
-function Animation( elem, properties, options ) {
-	var result,
-		stopped,
-		index = 0,
-		length = Animation.prefilters.length,
-		deferred = jQuery.Deferred().always( function() {
-
-			// Don't match elem in the :animated selector
-			delete tick.elem;
-		} ),
-		tick = function() {
-			if ( stopped ) {
-				return false;
-			}
-			var currentTime = fxNow || createFxNow(),
-				remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ),
-
-				// Support: Android 2.3 only
-				// Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497)
-				temp = remaining / animation.duration || 0,
-				percent = 1 - temp,
-				index = 0,
-				length = animation.tweens.length;
-
-			for ( ; index < length; index++ ) {
-				animation.tweens[ index ].run( percent );
-			}
-
-			deferred.notifyWith( elem, [ animation, percent, remaining ] );
-
-			// If there's more to do, yield
-			if ( percent < 1 && length ) {
-				return remaining;
-			}
-
-			// If this was an empty animation, synthesize a final progress notification
-			if ( !length ) {
-				deferred.notifyWith( elem, [ animation, 1, 0 ] );
-			}
-
-			// Resolve the animation and report its conclusion
-			deferred.resolveWith( elem, [ animation ] );
-			return false;
-		},
-		animation = deferred.promise( {
-			elem: elem,
-			props: jQuery.extend( {}, properties ),
-			opts: jQuery.extend( true, {
-				specialEasing: {},
-				easing: jQuery.easing._default
-			}, options ),
-			originalProperties: properties,
-			originalOptions: options,
-			startTime: fxNow || createFxNow(),
-			duration: options.duration,
-			tweens: [],
-			createTween: function( prop, end ) {
-				var tween = jQuery.Tween( elem, animation.opts, prop, end,
-						animation.opts.specialEasing[ prop ] || animation.opts.easing );
-				animation.tweens.push( tween );
-				return tween;
-			},
-			stop: function( gotoEnd ) {
-				var index = 0,
-
-					// If we are going to the end, we want to run all the tweens
-					// otherwise we skip this part
-					length = gotoEnd ? animation.tweens.length : 0;
-				if ( stopped ) {
-					return this;
-				}
-				stopped = true;
-				for ( ; index < length; index++ ) {
-					animation.tweens[ index ].run( 1 );
-				}
-
-				// Resolve when we played the last frame; otherwise, reject
-				if ( gotoEnd ) {
-					deferred.notifyWith( elem, [ animation, 1, 0 ] );
-					deferred.resolveWith( elem, [ animation, gotoEnd ] );
-				} else {
-					deferred.rejectWith( elem, [ animation, gotoEnd ] );
-				}
-				return this;
-			}
-		} ),
-		props = animation.props;
-
-	propFilter( props, animation.opts.specialEasing );
-
-	for ( ; index < length; index++ ) {
-		result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts );
-		if ( result ) {
-			if ( isFunction( result.stop ) ) {
-				jQuery._queueHooks( animation.elem, animation.opts.queue ).stop =
-					result.stop.bind( result );
-			}
-			return result;
-		}
-	}
-
-	jQuery.map( props, createTween, animation );
-
-	if ( isFunction( animation.opts.start ) ) {
-		animation.opts.start.call( elem, animation );
-	}
-
-	// Attach callbacks from options
-	animation
-		.progress( animation.opts.progress )
-		.done( animation.opts.done, animation.opts.complete )
-		.fail( animation.opts.fail )
-		.always( animation.opts.always );
-
-	jQuery.fx.timer(
-		jQuery.extend( tick, {
-			elem: elem,
-			anim: animation,
-			queue: animation.opts.queue
-		} )
-	);
-
-	return animation;
-}
-
-jQuery.Animation = jQuery.extend( Animation, {
-
-	tweeners: {
-		"*": [ function( prop, value ) {
-			var tween = this.createTween( prop, value );
-			adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween );
-			return tween;
-		} ]
-	},
-
-	tweener: function( props, callback ) {
-		if ( isFunction( props ) ) {
-			callback = props;
-			props = [ "*" ];
-		} else {
-			props = props.match( rnothtmlwhite );
-		}
-
-		var prop,
-			index = 0,
-			length = props.length;
-
-		for ( ; index < length; index++ ) {
-			prop = props[ index ];
-			Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || [];
-			Animation.tweeners[ prop ].unshift( callback );
-		}
-	},
-
-	prefilters: [ defaultPrefilter ],
-
-	prefilter: function( callback, prepend ) {
-		if ( prepend ) {
-			Animation.prefilters.unshift( callback );
-		} else {
-			Animation.prefilters.push( callback );
-		}
-	}
-} );
-
-jQuery.speed = function( speed, easing, fn ) {
-	var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : {
-		complete: fn || !fn && easing ||
-			isFunction( speed ) && speed,
-		duration: speed,
-		easing: fn && easing || easing && !isFunction( easing ) && easing
-	};
-
-	// Go to the end state if fx are off
-	if ( jQuery.fx.off ) {
-		opt.duration = 0;
-
-	} else {
-		if ( typeof opt.duration !== "number" ) {
-			if ( opt.duration in jQuery.fx.speeds ) {
-				opt.duration = jQuery.fx.speeds[ opt.duration ];
-
-			} else {
-				opt.duration = jQuery.fx.speeds._default;
-			}
-		}
-	}
-
-	// Normalize opt.queue - true/undefined/null -> "fx"
-	if ( opt.queue == null || opt.queue === true ) {
-		opt.queue = "fx";
-	}
-
-	// Queueing
-	opt.old = opt.complete;
-
-	opt.complete = function() {
-		if ( isFunction( opt.old ) ) {
-			opt.old.call( this );
-		}
-
-		if ( opt.queue ) {
-			jQuery.dequeue( this, opt.queue );
-		}
-	};
-
-	return opt;
-};
-
-jQuery.fn.extend( {
-	fadeTo: function( speed, to, easing, callback ) {
-
-		// Show any hidden elements after setting opacity to 0
-		return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show()
-
-			// Animate to the value specified
-			.end().animate( { opacity: to }, speed, easing, callback );
-	},
-	animate: function( prop, speed, easing, callback ) {
-		var empty = jQuery.isEmptyObject( prop ),
-			optall = jQuery.speed( speed, easing, callback ),
-			doAnimation = function() {
-
-				// Operate on a copy of prop so per-property easing won't be lost
-				var anim = Animation( this, jQuery.extend( {}, prop ), optall );
-
-				// Empty animations, or finishing resolves immediately
-				if ( empty || dataPriv.get( this, "finish" ) ) {
-					anim.stop( true );
-				}
-			};
-			doAnimation.finish = doAnimation;
-
-		return empty || optall.queue === false ?
-			this.each( doAnimation ) :
-			this.queue( optall.queue, doAnimation );
-	},
-	stop: function( type, clearQueue, gotoEnd ) {
-		var stopQueue = function( hooks ) {
-			var stop = hooks.stop;
-			delete hooks.stop;
-			stop( gotoEnd );
-		};
-
-		if ( typeof type !== "string" ) {
-			gotoEnd = clearQueue;
-			clearQueue = type;
-			type = undefined;
-		}
-		if ( clearQueue ) {
-			this.queue( type || "fx", [] );
-		}
-
-		return this.each( function() {
-			var dequeue = true,
-				index = type != null && type + "queueHooks",
-				timers = jQuery.timers,
-				data = dataPriv.get( this );
-
-			if ( index ) {
-				if ( data[ index ] && data[ index ].stop ) {
-					stopQueue( data[ index ] );
-				}
-			} else {
-				for ( index in data ) {
-					if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) {
-						stopQueue( data[ index ] );
-					}
-				}
-			}
-
-			for ( index = timers.length; index--; ) {
-				if ( timers[ index ].elem === this &&
-					( type == null || timers[ index ].queue === type ) ) {
-
-					timers[ index ].anim.stop( gotoEnd );
-					dequeue = false;
-					timers.splice( index, 1 );
-				}
-			}
-
-			// Start the next in the queue if the last step wasn't forced.
-			// Timers currently will call their complete callbacks, which
-			// will dequeue but only if they were gotoEnd.
-			if ( dequeue || !gotoEnd ) {
-				jQuery.dequeue( this, type );
-			}
-		} );
-	},
-	finish: function( type ) {
-		if ( type !== false ) {
-			type = type || "fx";
-		}
-		return this.each( function() {
-			var index,
-				data = dataPriv.get( this ),
-				queue = data[ type + "queue" ],
-				hooks = data[ type + "queueHooks" ],
-				timers = jQuery.timers,
-				length = queue ? queue.length : 0;
-
-			// Enable finishing flag on private data
-			data.finish = true;
-
-			// Empty the queue first
-			jQuery.queue( this, type, [] );
-
-			if ( hooks && hooks.stop ) {
-				hooks.stop.call( this, true );
-			}
-
-			// Look for any active animations, and finish them
-			for ( index = timers.length; index--; ) {
-				if ( timers[ index ].elem === this && timers[ index ].queue === type ) {
-					timers[ index ].anim.stop( true );
-					timers.splice( index, 1 );
-				}
-			}
-
-			// Look for any animations in the old queue and finish them
-			for ( index = 0; index < length; index++ ) {
-				if ( queue[ index ] && queue[ index ].finish ) {
-					queue[ index ].finish.call( this );
-				}
-			}
-
-			// Turn off finishing flag
-			delete data.finish;
-		} );
-	}
-} );
-
-jQuery.each( [ "toggle", "show", "hide" ], function( _i, name ) {
-	var cssFn = jQuery.fn[ name ];
-	jQuery.fn[ name ] = function( speed, easing, callback ) {
-		return speed == null || typeof speed === "boolean" ?
-			cssFn.apply( this, arguments ) :
-			this.animate( genFx( name, true ), speed, easing, callback );
-	};
-} );
-
-// Generate shortcuts for custom animations
-jQuery.each( {
-	slideDown: genFx( "show" ),
-	slideUp: genFx( "hide" ),
-	slideToggle: genFx( "toggle" ),
-	fadeIn: { opacity: "show" },
-	fadeOut: { opacity: "hide" },
-	fadeToggle: { opacity: "toggle" }
-}, function( name, props ) {
-	jQuery.fn[ name ] = function( speed, easing, callback ) {
-		return this.animate( props, speed, easing, callback );
-	};
-} );
-
-jQuery.timers = [];
-jQuery.fx.tick = function() {
-	var timer,
-		i = 0,
-		timers = jQuery.timers;
-
-	fxNow = Date.now();
-
-	for ( ; i < timers.length; i++ ) {
-		timer = timers[ i ];
-
-		// Run the timer and safely remove it when done (allowing for external removal)
-		if ( !timer() && timers[ i ] === timer ) {
-			timers.splice( i--, 1 );
-		}
-	}
-
-	if ( !timers.length ) {
-		jQuery.fx.stop();
-	}
-	fxNow = undefined;
-};
-
-jQuery.fx.timer = function( timer ) {
-	jQuery.timers.push( timer );
-	jQuery.fx.start();
-};
-
-jQuery.fx.interval = 13;
-jQuery.fx.start = function() {
-	if ( inProgress ) {
-		return;
-	}
-
-	inProgress = true;
-	schedule();
-};
-
-jQuery.fx.stop = function() {
-	inProgress = null;
-};
-
-jQuery.fx.speeds = {
-	slow: 600,
-	fast: 200,
-
-	// Default speed
-	_default: 400
-};
-
-
-// Based off of the plugin by Clint Helfers, with permission.
-// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/
-jQuery.fn.delay = function( time, type ) {
-	time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time;
-	type = type || "fx";
-
-	return this.queue( type, function( next, hooks ) {
-		var timeout = window.setTimeout( next, time );
-		hooks.stop = function() {
-			window.clearTimeout( timeout );
-		};
-	} );
-};
-
-
-( function() {
-	var input = document.createElement( "input" ),
-		select = document.createElement( "select" ),
-		opt = select.appendChild( document.createElement( "option" ) );
-
-	input.type = "checkbox";
-
-	// Support: Android <=4.3 only
-	// Default value for a checkbox should be "on"
-	support.checkOn = input.value !== "";
-
-	// Support: IE <=11 only
-	// Must access selectedIndex to make default options select
-	support.optSelected = opt.selected;
-
-	// Support: IE <=11 only
-	// An input loses its value after becoming a radio
-	input = document.createElement( "input" );
-	input.value = "t";
-	input.type = "radio";
-	support.radioValue = input.value === "t";
-} )();
-
-
-var boolHook,
-	attrHandle = jQuery.expr.attrHandle;
-
-jQuery.fn.extend( {
-	attr: function( name, value ) {
-		return access( this, jQuery.attr, name, value, arguments.length > 1 );
-	},
-
-	removeAttr: function( name ) {
-		return this.each( function() {
-			jQuery.removeAttr( this, name );
-		} );
-	}
-} );
-
-jQuery.extend( {
-	attr: function( elem, name, value ) {
-		var ret, hooks,
-			nType = elem.nodeType;
-
-		// Don't get/set attributes on text, comment and attribute nodes
-		if ( nType === 3 || nType === 8 || nType === 2 ) {
-			return;
-		}
-
-		// Fallback to prop when attributes are not supported
-		if ( typeof elem.getAttribute === "undefined" ) {
-			return jQuery.prop( elem, name, value );
-		}
-
-		// Attribute hooks are determined by the lowercase version
-		// Grab necessary hook if one is defined
-		if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) {
-			hooks = jQuery.attrHooks[ name.toLowerCase() ] ||
-				( jQuery.expr.match.bool.test( name ) ? boolHook : undefined );
-		}
-
-		if ( value !== undefined ) {
-			if ( value === null ) {
-				jQuery.removeAttr( elem, name );
-				return;
-			}
-
-			if ( hooks && "set" in hooks &&
-				( ret = hooks.set( elem, value, name ) ) !== undefined ) {
-				return ret;
-			}
-
-			elem.setAttribute( name, value + "" );
-			return value;
-		}
-
-		if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) {
-			return ret;
-		}
-
-		ret = jQuery.find.attr( elem, name );
-
-		// Non-existent attributes return null, we normalize to undefined
-		return ret == null ? undefined : ret;
-	},
-
-	attrHooks: {
-		type: {
-			set: function( elem, value ) {
-				if ( !support.radioValue && value === "radio" &&
-					nodeName( elem, "input" ) ) {
-					var val = elem.value;
-					elem.setAttribute( "type", value );
-					if ( val ) {
-						elem.value = val;
-					}
-					return value;
-				}
-			}
-		}
-	},
-
-	removeAttr: function( elem, value ) {
-		var name,
-			i = 0,
-
-			// Attribute names can contain non-HTML whitespace characters
-			// https://html.spec.whatwg.org/multipage/syntax.html#attributes-2
-			attrNames = value && value.match( rnothtmlwhite );
-
-		if ( attrNames && elem.nodeType === 1 ) {
-			while ( ( name = attrNames[ i++ ] ) ) {
-				elem.removeAttribute( name );
-			}
-		}
-	}
-} );
-
-// Hooks for boolean attributes
-boolHook = {
-	set: function( elem, value, name ) {
-		if ( value === false ) {
-
-			// Remove boolean attributes when set to false
-			jQuery.removeAttr( elem, name );
-		} else {
-			elem.setAttribute( name, name );
-		}
-		return name;
-	}
-};
-
-jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( _i, name ) {
-	var getter = attrHandle[ name ] || jQuery.find.attr;
-
-	attrHandle[ name ] = function( elem, name, isXML ) {
-		var ret, handle,
-			lowercaseName = name.toLowerCase();
-
-		if ( !isXML ) {
-
-			// Avoid an infinite loop by temporarily removing this function from the getter
-			handle = attrHandle[ lowercaseName ];
-			attrHandle[ lowercaseName ] = ret;
-			ret = getter( elem, name, isXML ) != null ?
-				lowercaseName :
-				null;
-			attrHandle[ lowercaseName ] = handle;
-		}
-		return ret;
-	};
-} );
-
-
-
-
-var rfocusable = /^(?:input|select|textarea|button)$/i,
-	rclickable = /^(?:a|area)$/i;
-
-jQuery.fn.extend( {
-	prop: function( name, value ) {
-		return access( this, jQuery.prop, name, value, arguments.length > 1 );
-	},
-
-	removeProp: function( name ) {
-		return this.each( function() {
-			delete this[ jQuery.propFix[ name ] || name ];
-		} );
-	}
-} );
-
-jQuery.extend( {
-	prop: function( elem, name, value ) {
-		var ret, hooks,
-			nType = elem.nodeType;
-
-		// Don't get/set properties on text, comment and attribute nodes
-		if ( nType === 3 || nType === 8 || nType === 2 ) {
-			return;
-		}
-
-		if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) {
-
-			// Fix name and attach hooks
-			name = jQuery.propFix[ name ] || name;
-			hooks = jQuery.propHooks[ name ];
-		}
-
-		if ( value !== undefined ) {
-			if ( hooks && "set" in hooks &&
-				( ret = hooks.set( elem, value, name ) ) !== undefined ) {
-				return ret;
-			}
-
-			return ( elem[ name ] = value );
-		}
-
-		if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) {
-			return ret;
-		}
-
-		return elem[ name ];
-	},
-
-	propHooks: {
-		tabIndex: {
-			get: function( elem ) {
-
-				// Support: IE <=9 - 11 only
-				// elem.tabIndex doesn't always return the
-				// correct value when it hasn't been explicitly set
-				// https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/
-				// Use proper attribute retrieval(#12072)
-				var tabindex = jQuery.find.attr( elem, "tabindex" );
-
-				if ( tabindex ) {
-					return parseInt( tabindex, 10 );
-				}
-
-				if (
-					rfocusable.test( elem.nodeName ) ||
-					rclickable.test( elem.nodeName ) &&
-					elem.href
-				) {
-					return 0;
-				}
-
-				return -1;
-			}
-		}
-	},
-
-	propFix: {
-		"for": "htmlFor",
-		"class": "className"
-	}
-} );
-
-// Support: IE <=11 only
-// Accessing the selectedIndex property
-// forces the browser to respect setting selected
-// on the option
-// The getter ensures a default option is selected
-// when in an optgroup
-// eslint rule "no-unused-expressions" is disabled for this code
-// since it considers such accessions noop
-if ( !support.optSelected ) {
-	jQuery.propHooks.selected = {
-		get: function( elem ) {
-
-			/* eslint no-unused-expressions: "off" */
-
-			var parent = elem.parentNode;
-			if ( parent && parent.parentNode ) {
-				parent.parentNode.selectedIndex;
-			}
-			return null;
-		},
-		set: function( elem ) {
-
-			/* eslint no-unused-expressions: "off" */
-
-			var parent = elem.parentNode;
-			if ( parent ) {
-				parent.selectedIndex;
-
-				if ( parent.parentNode ) {
-					parent.parentNode.selectedIndex;
-				}
-			}
-		}
-	};
-}
-
-jQuery.each( [
-	"tabIndex",
-	"readOnly",
-	"maxLength",
-	"cellSpacing",
-	"cellPadding",
-	"rowSpan",
-	"colSpan",
-	"useMap",
-	"frameBorder",
-	"contentEditable"
-], function() {
-	jQuery.propFix[ this.toLowerCase() ] = this;
-} );
-
-
-
-
-	// Strip and collapse whitespace according to HTML spec
-	// https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace
-	function stripAndCollapse( value ) {
-		var tokens = value.match( rnothtmlwhite ) || [];
-		return tokens.join( " " );
-	}
-
-
-function getClass( elem ) {
-	return elem.getAttribute && elem.getAttribute( "class" ) || "";
-}
-
-function classesToArray( value ) {
-	if ( Array.isArray( value ) ) {
-		return value;
-	}
-	if ( typeof value === "string" ) {
-		return value.match( rnothtmlwhite ) || [];
-	}
-	return [];
-}
-
-jQuery.fn.extend( {
-	addClass: function( value ) {
-		var classes, elem, cur, curValue, clazz, j, finalValue,
-			i = 0;
-
-		if ( isFunction( value ) ) {
-			return this.each( function( j ) {
-				jQuery( this ).addClass( value.call( this, j, getClass( this ) ) );
-			} );
-		}
-
-		classes = classesToArray( value );
-
-		if ( classes.length ) {
-			while ( ( elem = this[ i++ ] ) ) {
-				curValue = getClass( elem );
-				cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " );
-
-				if ( cur ) {
-					j = 0;
-					while ( ( clazz = classes[ j++ ] ) ) {
-						if ( cur.indexOf( " " + clazz + " " ) < 0 ) {
-							cur += clazz + " ";
-						}
-					}
-
-					// Only assign if different to avoid unneeded rendering.
-					finalValue = stripAndCollapse( cur );
-					if ( curValue !== finalValue ) {
-						elem.setAttribute( "class", finalValue );
-					}
-				}
-			}
-		}
-
-		return this;
-	},
-
-	removeClass: function( value ) {
-		var classes, elem, cur, curValue, clazz, j, finalValue,
-			i = 0;
-
-		if ( isFunction( value ) ) {
-			return this.each( function( j ) {
-				jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) );
-			} );
-		}
-
-		if ( !arguments.length ) {
-			return this.attr( "class", "" );
-		}
-
-		classes = classesToArray( value );
-
-		if ( classes.length ) {
-			while ( ( elem = this[ i++ ] ) ) {
-				curValue = getClass( elem );
-
-				// This expression is here for better compressibility (see addClass)
-				cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " );
-
-				if ( cur ) {
-					j = 0;
-					while ( ( clazz = classes[ j++ ] ) ) {
-
-						// Remove *all* instances
-						while ( cur.indexOf( " " + clazz + " " ) > -1 ) {
-							cur = cur.replace( " " + clazz + " ", " " );
-						}
-					}
-
-					// Only assign if different to avoid unneeded rendering.
-					finalValue = stripAndCollapse( cur );
-					if ( curValue !== finalValue ) {
-						elem.setAttribute( "class", finalValue );
-					}
-				}
-			}
-		}
-
-		return this;
-	},
-
-	toggleClass: function( value, stateVal ) {
-		var type = typeof value,
-			isValidValue = type === "string" || Array.isArray( value );
-
-		if ( typeof stateVal === "boolean" && isValidValue ) {
-			return stateVal ? this.addClass( value ) : this.removeClass( value );
-		}
-
-		if ( isFunction( value ) ) {
-			return this.each( function( i ) {
-				jQuery( this ).toggleClass(
-					value.call( this, i, getClass( this ), stateVal ),
-					stateVal
-				);
-			} );
-		}
-
-		return this.each( function() {
-			var className, i, self, classNames;
-
-			if ( isValidValue ) {
-
-				// Toggle individual class names
-				i = 0;
-				self = jQuery( this );
-				classNames = classesToArray( value );
-
-				while ( ( className = classNames[ i++ ] ) ) {
-
-					// Check each className given, space separated list
-					if ( self.hasClass( className ) ) {
-						self.removeClass( className );
-					} else {
-						self.addClass( className );
-					}
-				}
-
-			// Toggle whole class name
-			} else if ( value === undefined || type === "boolean" ) {
-				className = getClass( this );
-				if ( className ) {
-
-					// Store className if set
-					dataPriv.set( this, "__className__", className );
-				}
-
-				// If the element has a class name or if we're passed `false`,
-				// then remove the whole classname (if there was one, the above saved it).
-				// Otherwise bring back whatever was previously saved (if anything),
-				// falling back to the empty string if nothing was stored.
-				if ( this.setAttribute ) {
-					this.setAttribute( "class",
-						className || value === false ?
-						"" :
-						dataPriv.get( this, "__className__" ) || ""
-					);
-				}
-			}
-		} );
-	},
-
-	hasClass: function( selector ) {
-		var className, elem,
-			i = 0;
-
-		className = " " + selector + " ";
-		while ( ( elem = this[ i++ ] ) ) {
-			if ( elem.nodeType === 1 &&
-				( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) {
-					return true;
-			}
-		}
-
-		return false;
-	}
-} );
-
-
-
-
-var rreturn = /\r/g;
-
-jQuery.fn.extend( {
-	val: function( value ) {
-		var hooks, ret, valueIsFunction,
-			elem = this[ 0 ];
-
-		if ( !arguments.length ) {
-			if ( elem ) {
-				hooks = jQuery.valHooks[ elem.type ] ||
-					jQuery.valHooks[ elem.nodeName.toLowerCase() ];
-
-				if ( hooks &&
-					"get" in hooks &&
-					( ret = hooks.get( elem, "value" ) ) !== undefined
-				) {
-					return ret;
-				}
-
-				ret = elem.value;
-
-				// Handle most common string cases
-				if ( typeof ret === "string" ) {
-					return ret.replace( rreturn, "" );
-				}
-
-				// Handle cases where value is null/undef or number
-				return ret == null ? "" : ret;
-			}
-
-			return;
-		}
-
-		valueIsFunction = isFunction( value );
-
-		return this.each( function( i ) {
-			var val;
-
-			if ( this.nodeType !== 1 ) {
-				return;
-			}
-
-			if ( valueIsFunction ) {
-				val = value.call( this, i, jQuery( this ).val() );
-			} else {
-				val = value;
-			}
-
-			// Treat null/undefined as ""; convert numbers to string
-			if ( val == null ) {
-				val = "";
-
-			} else if ( typeof val === "number" ) {
-				val += "";
-
-			} else if ( Array.isArray( val ) ) {
-				val = jQuery.map( val, function( value ) {
-					return value == null ? "" : value + "";
-				} );
-			}
-
-			hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ];
-
-			// If set returns undefined, fall back to normal setting
-			if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) {
-				this.value = val;
-			}
-		} );
-	}
-} );
-
-jQuery.extend( {
-	valHooks: {
-		option: {
-			get: function( elem ) {
-
-				var val = jQuery.find.attr( elem, "value" );
-				return val != null ?
-					val :
-
-					// Support: IE <=10 - 11 only
-					// option.text throws exceptions (#14686, #14858)
-					// Strip and collapse whitespace
-					// https://html.spec.whatwg.org/#strip-and-collapse-whitespace
-					stripAndCollapse( jQuery.text( elem ) );
-			}
-		},
-		select: {
-			get: function( elem ) {
-				var value, option, i,
-					options = elem.options,
-					index = elem.selectedIndex,
-					one = elem.type === "select-one",
-					values = one ? null : [],
-					max = one ? index + 1 : options.length;
-
-				if ( index < 0 ) {
-					i = max;
-
-				} else {
-					i = one ? index : 0;
-				}
-
-				// Loop through all the selected options
-				for ( ; i < max; i++ ) {
-					option = options[ i ];
-
-					// Support: IE <=9 only
-					// IE8-9 doesn't update selected after form reset (#2551)
-					if ( ( option.selected || i === index ) &&
-
-							// Don't return options that are disabled or in a disabled optgroup
-							!option.disabled &&
-							( !option.parentNode.disabled ||
-								!nodeName( option.parentNode, "optgroup" ) ) ) {
-
-						// Get the specific value for the option
-						value = jQuery( option ).val();
-
-						// We don't need an array for one selects
-						if ( one ) {
-							return value;
-						}
-
-						// Multi-Selects return an array
-						values.push( value );
-					}
-				}
-
-				return values;
-			},
-
-			set: function( elem, value ) {
-				var optionSet, option,
-					options = elem.options,
-					values = jQuery.makeArray( value ),
-					i = options.length;
-
-				while ( i-- ) {
-					option = options[ i ];
-
-					/* eslint-disable no-cond-assign */
-
-					if ( option.selected =
-						jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1
-					) {
-						optionSet = true;
-					}
-
-					/* eslint-enable no-cond-assign */
-				}
-
-				// Force browsers to behave consistently when non-matching value is set
-				if ( !optionSet ) {
-					elem.selectedIndex = -1;
-				}
-				return values;
-			}
-		}
-	}
-} );
-
-// Radios and checkboxes getter/setter
-jQuery.each( [ "radio", "checkbox" ], function() {
-	jQuery.valHooks[ this ] = {
-		set: function( elem, value ) {
-			if ( Array.isArray( value ) ) {
-				return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 );
-			}
-		}
-	};
-	if ( !support.checkOn ) {
-		jQuery.valHooks[ this ].get = function( elem ) {
-			return elem.getAttribute( "value" ) === null ? "on" : elem.value;
-		};
-	}
-} );
-
-
-
-
-// Return jQuery for attributes-only inclusion
-
-
-support.focusin = "onfocusin" in window;
-
-
-var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/,
-	stopPropagationCallback = function( e ) {
-		e.stopPropagation();
-	};
-
-jQuery.extend( jQuery.event, {
-
-	trigger: function( event, data, elem, onlyHandlers ) {
-
-		var i, cur, tmp, bubbleType, ontype, handle, special, lastElement,
-			eventPath = [ elem || document ],
-			type = hasOwn.call( event, "type" ) ? event.type : event,
-			namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : [];
-
-		cur = lastElement = tmp = elem = elem || document;
-
-		// Don't do events on text and comment nodes
-		if ( elem.nodeType === 3 || elem.nodeType === 8 ) {
-			return;
-		}
-
-		// focus/blur morphs to focusin/out; ensure we're not firing them right now
-		if ( rfocusMorph.test( type + jQuery.event.triggered ) ) {
-			return;
-		}
-
-		if ( type.indexOf( "." ) > -1 ) {
-
-			// Namespaced trigger; create a regexp to match event type in handle()
-			namespaces = type.split( "." );
-			type = namespaces.shift();
-			namespaces.sort();
-		}
-		ontype = type.indexOf( ":" ) < 0 && "on" + type;
-
-		// Caller can pass in a jQuery.Event object, Object, or just an event type string
-		event = event[ jQuery.expando ] ?
-			event :
-			new jQuery.Event( type, typeof event === "object" && event );
-
-		// Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true)
-		event.isTrigger = onlyHandlers ? 2 : 3;
-		event.namespace = namespaces.join( "." );
-		event.rnamespace = event.namespace ?
-			new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) :
-			null;
-
-		// Clean up the event in case it is being reused
-		event.result = undefined;
-		if ( !event.target ) {
-			event.target = elem;
-		}
-
-		// Clone any incoming data and prepend the event, creating the handler arg list
-		data = data == null ?
-			[ event ] :
-			jQuery.makeArray( data, [ event ] );
-
-		// Allow special events to draw outside the lines
-		special = jQuery.event.special[ type ] || {};
-		if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) {
-			return;
-		}
-
-		// Determine event propagation path in advance, per W3C events spec (#9951)
-		// Bubble up to document, then to window; watch for a global ownerDocument var (#9724)
-		if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) {
-
-			bubbleType = special.delegateType || type;
-			if ( !rfocusMorph.test( bubbleType + type ) ) {
-				cur = cur.parentNode;
-			}
-			for ( ; cur; cur = cur.parentNode ) {
-				eventPath.push( cur );
-				tmp = cur;
-			}
-
-			// Only add window if we got to document (e.g., not plain obj or detached DOM)
-			if ( tmp === ( elem.ownerDocument || document ) ) {
-				eventPath.push( tmp.defaultView || tmp.parentWindow || window );
-			}
-		}
-
-		// Fire handlers on the event path
-		i = 0;
-		while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) {
-			lastElement = cur;
-			event.type = i > 1 ?
-				bubbleType :
-				special.bindType || type;
-
-			// jQuery handler
-			handle = (
-					dataPriv.get( cur, "events" ) || Object.create( null )
-				)[ event.type ] &&
-				dataPriv.get( cur, "handle" );
-			if ( handle ) {
-				handle.apply( cur, data );
-			}
-
-			// Native handler
-			handle = ontype && cur[ ontype ];
-			if ( handle && handle.apply && acceptData( cur ) ) {
-				event.result = handle.apply( cur, data );
-				if ( event.result === false ) {
-					event.preventDefault();
-				}
-			}
-		}
-		event.type = type;
-
-		// If nobody prevented the default action, do it now
-		if ( !onlyHandlers && !event.isDefaultPrevented() ) {
-
-			if ( ( !special._default ||
-				special._default.apply( eventPath.pop(), data ) === false ) &&
-				acceptData( elem ) ) {
-
-				// Call a native DOM method on the target with the same name as the event.
-				// Don't do default actions on window, that's where global variables be (#6170)
-				if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) {
-
-					// Don't re-trigger an onFOO event when we call its FOO() method
-					tmp = elem[ ontype ];
-
-					if ( tmp ) {
-						elem[ ontype ] = null;
-					}
-
-					// Prevent re-triggering of the same event, since we already bubbled it above
-					jQuery.event.triggered = type;
-
-					if ( event.isPropagationStopped() ) {
-						lastElement.addEventListener( type, stopPropagationCallback );
-					}
-
-					elem[ type ]();
-
-					if ( event.isPropagationStopped() ) {
-						lastElement.removeEventListener( type, stopPropagationCallback );
-					}
-
-					jQuery.event.triggered = undefined;
-
-					if ( tmp ) {
-						elem[ ontype ] = tmp;
-					}
-				}
-			}
-		}
-
-		return event.result;
-	},
-
-	// Piggyback on a donor event to simulate a different one
-	// Used only for `focus(in | out)` events
-	simulate: function( type, elem, event ) {
-		var e = jQuery.extend(
-			new jQuery.Event(),
-			event,
-			{
-				type: type,
-				isSimulated: true
-			}
-		);
-
-		jQuery.event.trigger( e, null, elem );
-	}
-
-} );
-
-jQuery.fn.extend( {
-
-	trigger: function( type, data ) {
-		return this.each( function() {
-			jQuery.event.trigger( type, data, this );
-		} );
-	},
-	triggerHandler: function( type, data ) {
-		var elem = this[ 0 ];
-		if ( elem ) {
-			return jQuery.event.trigger( type, data, elem, true );
-		}
-	}
-} );
-
-
-// Support: Firefox <=44
-// Firefox doesn't have focus(in | out) events
-// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787
-//
-// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1
-// focus(in | out) events fire after focus & blur events,
-// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order
-// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857
-if ( !support.focusin ) {
-	jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) {
-
-		// Attach a single capturing handler on the document while someone wants focusin/focusout
-		var handler = function( event ) {
-			jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) );
-		};
-
-		jQuery.event.special[ fix ] = {
-			setup: function() {
-
-				// Handle: regular nodes (via `this.ownerDocument`), window
-				// (via `this.document`) & document (via `this`).
-				var doc = this.ownerDocument || this.document || this,
-					attaches = dataPriv.access( doc, fix );
-
-				if ( !attaches ) {
-					doc.addEventListener( orig, handler, true );
-				}
-				dataPriv.access( doc, fix, ( attaches || 0 ) + 1 );
-			},
-			teardown: function() {
-				var doc = this.ownerDocument || this.document || this,
-					attaches = dataPriv.access( doc, fix ) - 1;
-
-				if ( !attaches ) {
-					doc.removeEventListener( orig, handler, true );
-					dataPriv.remove( doc, fix );
-
-				} else {
-					dataPriv.access( doc, fix, attaches );
-				}
-			}
-		};
-	} );
-}
-var location = window.location;
-
-var nonce = { guid: Date.now() };
-
-var rquery = ( /\?/ );
-
-
-
-// Cross-browser xml parsing
-jQuery.parseXML = function( data ) {
-	var xml;
-	if ( !data || typeof data !== "string" ) {
-		return null;
-	}
-
-	// Support: IE 9 - 11 only
-	// IE throws on parseFromString with invalid input.
-	try {
-		xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" );
-	} catch ( e ) {
-		xml = undefined;
-	}
-
-	if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) {
-		jQuery.error( "Invalid XML: " + data );
-	}
-	return xml;
-};
-
-
-var
-	rbracket = /\[\]$/,
-	rCRLF = /\r?\n/g,
-	rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i,
-	rsubmittable = /^(?:input|select|textarea|keygen)/i;
-
-function buildParams( prefix, obj, traditional, add ) {
-	var name;
-
-	if ( Array.isArray( obj ) ) {
-
-		// Serialize array item.
-		jQuery.each( obj, function( i, v ) {
-			if ( traditional || rbracket.test( prefix ) ) {
-
-				// Treat each array item as a scalar.
-				add( prefix, v );
-
-			} else {
-
-				// Item is non-scalar (array or object), encode its numeric index.
-				buildParams(
-					prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]",
-					v,
-					traditional,
-					add
-				);
-			}
-		} );
-
-	} else if ( !traditional && toType( obj ) === "object" ) {
-
-		// Serialize object item.
-		for ( name in obj ) {
-			buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add );
-		}
-
-	} else {
-
-		// Serialize scalar item.
-		add( prefix, obj );
-	}
-}
-
-// Serialize an array of form elements or a set of
-// key/values into a query string
-jQuery.param = function( a, traditional ) {
-	var prefix,
-		s = [],
-		add = function( key, valueOrFunction ) {
-
-			// If value is a function, invoke it and use its return value
-			var value = isFunction( valueOrFunction ) ?
-				valueOrFunction() :
-				valueOrFunction;
-
-			s[ s.length ] = encodeURIComponent( key ) + "=" +
-				encodeURIComponent( value == null ? "" : value );
-		};
-
-	if ( a == null ) {
-		return "";
-	}
-
-	// If an array was passed in, assume that it is an array of form elements.
-	if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) {
-
-		// Serialize the form elements
-		jQuery.each( a, function() {
-			add( this.name, this.value );
-		} );
-
-	} else {
-
-		// If traditional, encode the "old" way (the way 1.3.2 or older
-		// did it), otherwise encode params recursively.
-		for ( prefix in a ) {
-			buildParams( prefix, a[ prefix ], traditional, add );
-		}
-	}
-
-	// Return the resulting serialization
-	return s.join( "&" );
-};
-
-jQuery.fn.extend( {
-	serialize: function() {
-		return jQuery.param( this.serializeArray() );
-	},
-	serializeArray: function() {
-		return this.map( function() {
-
-			// Can add propHook for "elements" to filter or add form elements
-			var elements = jQuery.prop( this, "elements" );
-			return elements ? jQuery.makeArray( elements ) : this;
-		} )
-		.filter( function() {
-			var type = this.type;
-
-			// Use .is( ":disabled" ) so that fieldset[disabled] works
-			return this.name && !jQuery( this ).is( ":disabled" ) &&
-				rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) &&
-				( this.checked || !rcheckableType.test( type ) );
-		} )
-		.map( function( _i, elem ) {
-			var val = jQuery( this ).val();
-
-			if ( val == null ) {
-				return null;
-			}
-
-			if ( Array.isArray( val ) ) {
-				return jQuery.map( val, function( val ) {
-					return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) };
-				} );
-			}
-
-			return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) };
-		} ).get();
-	}
-} );
-
-
-var
-	r20 = /%20/g,
-	rhash = /#.*$/,
-	rantiCache = /([?&])_=[^&]*/,
-	rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg,
-
-	// #7653, #8125, #8152: local protocol detection
-	rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/,
-	rnoContent = /^(?:GET|HEAD)$/,
-	rprotocol = /^\/\//,
-
-	/* Prefilters
-	 * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example)
-	 * 2) These are called:
-	 *    - BEFORE asking for a transport
-	 *    - AFTER param serialization (s.data is a string if s.processData is true)
-	 * 3) key is the dataType
-	 * 4) the catchall symbol "*" can be used
-	 * 5) execution will start with transport dataType and THEN continue down to "*" if needed
-	 */
-	prefilters = {},
-
-	/* Transports bindings
-	 * 1) key is the dataType
-	 * 2) the catchall symbol "*" can be used
-	 * 3) selection will start with transport dataType and THEN go to "*" if needed
-	 */
-	transports = {},
-
-	// Avoid comment-prolog char sequence (#10098); must appease lint and evade compression
-	allTypes = "*/".concat( "*" ),
-
-	// Anchor tag for parsing the document origin
-	originAnchor = document.createElement( "a" );
-	originAnchor.href = location.href;
-
-// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport
-function addToPrefiltersOrTransports( structure ) {
-
-	// dataTypeExpression is optional and defaults to "*"
-	return function( dataTypeExpression, func ) {
-
-		if ( typeof dataTypeExpression !== "string" ) {
-			func = dataTypeExpression;
-			dataTypeExpression = "*";
-		}
-
-		var dataType,
-			i = 0,
-			dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || [];
-
-		if ( isFunction( func ) ) {
-
-			// For each dataType in the dataTypeExpression
-			while ( ( dataType = dataTypes[ i++ ] ) ) {
-
-				// Prepend if requested
-				if ( dataType[ 0 ] === "+" ) {
-					dataType = dataType.slice( 1 ) || "*";
-					( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func );
-
-				// Otherwise append
-				} else {
-					( structure[ dataType ] = structure[ dataType ] || [] ).push( func );
-				}
-			}
-		}
-	};
-}
-
-// Base inspection function for prefilters and transports
-function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) {
-
-	var inspected = {},
-		seekingTransport = ( structure === transports );
-
-	function inspect( dataType ) {
-		var selected;
-		inspected[ dataType ] = true;
-		jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) {
-			var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR );
-			if ( typeof dataTypeOrTransport === "string" &&
-				!seekingTransport && !inspected[ dataTypeOrTransport ] ) {
-
-				options.dataTypes.unshift( dataTypeOrTransport );
-				inspect( dataTypeOrTransport );
-				return false;
-			} else if ( seekingTransport ) {
-				return !( selected = dataTypeOrTransport );
-			}
-		} );
-		return selected;
-	}
-
-	return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" );
-}
-
-// A special extend for ajax options
-// that takes "flat" options (not to be deep extended)
-// Fixes #9887
-function ajaxExtend( target, src ) {
-	var key, deep,
-		flatOptions = jQuery.ajaxSettings.flatOptions || {};
-
-	for ( key in src ) {
-		if ( src[ key ] !== undefined ) {
-			( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ];
-		}
-	}
-	if ( deep ) {
-		jQuery.extend( true, target, deep );
-	}
-
-	return target;
-}
-
-/* Handles responses to an ajax request:
- * - finds the right dataType (mediates between content-type and expected dataType)
- * - returns the corresponding response
- */
-function ajaxHandleResponses( s, jqXHR, responses ) {
-
-	var ct, type, finalDataType, firstDataType,
-		contents = s.contents,
-		dataTypes = s.dataTypes;
-
-	// Remove auto dataType and get content-type in the process
-	while ( dataTypes[ 0 ] === "*" ) {
-		dataTypes.shift();
-		if ( ct === undefined ) {
-			ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" );
-		}
-	}
-
-	// Check if we're dealing with a known content-type
-	if ( ct ) {
-		for ( type in contents ) {
-			if ( contents[ type ] && contents[ type ].test( ct ) ) {
-				dataTypes.unshift( type );
-				break;
-			}
-		}
-	}
-
-	// Check to see if we have a response for the expected dataType
-	if ( dataTypes[ 0 ] in responses ) {
-		finalDataType = dataTypes[ 0 ];
-	} else {
-
-		// Try convertible dataTypes
-		for ( type in responses ) {
-			if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) {
-				finalDataType = type;
-				break;
-			}
-			if ( !firstDataType ) {
-				firstDataType = type;
-			}
-		}
-
-		// Or just use first one
-		finalDataType = finalDataType || firstDataType;
-	}
-
-	// If we found a dataType
-	// We add the dataType to the list if needed
-	// and return the corresponding response
-	if ( finalDataType ) {
-		if ( finalDataType !== dataTypes[ 0 ] ) {
-			dataTypes.unshift( finalDataType );
-		}
-		return responses[ finalDataType ];
-	}
-}
-
-/* Chain conversions given the request and the original response
- * Also sets the responseXXX fields on the jqXHR instance
- */
-function ajaxConvert( s, response, jqXHR, isSuccess ) {
-	var conv2, current, conv, tmp, prev,
-		converters = {},
-
-		// Work with a copy of dataTypes in case we need to modify it for conversion
-		dataTypes = s.dataTypes.slice();
-
-	// Create converters map with lowercased keys
-	if ( dataTypes[ 1 ] ) {
-		for ( conv in s.converters ) {
-			converters[ conv.toLowerCase() ] = s.converters[ conv ];
-		}
-	}
-
-	current = dataTypes.shift();
-
-	// Convert to each sequential dataType
-	while ( current ) {
-
-		if ( s.responseFields[ current ] ) {
-			jqXHR[ s.responseFields[ current ] ] = response;
-		}
-
-		// Apply the dataFilter if provided
-		if ( !prev && isSuccess && s.dataFilter ) {
-			response = s.dataFilter( response, s.dataType );
-		}
-
-		prev = current;
-		current = dataTypes.shift();
-
-		if ( current ) {
-
-			// There's only work to do if current dataType is non-auto
-			if ( current === "*" ) {
-
-				current = prev;
-
-			// Convert response if prev dataType is non-auto and differs from current
-			} else if ( prev !== "*" && prev !== current ) {
-
-				// Seek a direct converter
-				conv = converters[ prev + " " + current ] || converters[ "* " + current ];
-
-				// If none found, seek a pair
-				if ( !conv ) {
-					for ( conv2 in converters ) {
-
-						// If conv2 outputs current
-						tmp = conv2.split( " " );
-						if ( tmp[ 1 ] === current ) {
-
-							// If prev can be converted to accepted input
-							conv = converters[ prev + " " + tmp[ 0 ] ] ||
-								converters[ "* " + tmp[ 0 ] ];
-							if ( conv ) {
-
-								// Condense equivalence converters
-								if ( conv === true ) {
-									conv = converters[ conv2 ];
-
-								// Otherwise, insert the intermediate dataType
-								} else if ( converters[ conv2 ] !== true ) {
-									current = tmp[ 0 ];
-									dataTypes.unshift( tmp[ 1 ] );
-								}
-								break;
-							}
-						}
-					}
-				}
-
-				// Apply converter (if not an equivalence)
-				if ( conv !== true ) {
-
-					// Unless errors are allowed to bubble, catch and return them
-					if ( conv && s.throws ) {
-						response = conv( response );
-					} else {
-						try {
-							response = conv( response );
-						} catch ( e ) {
-							return {
-								state: "parsererror",
-								error: conv ? e : "No conversion from " + prev + " to " + current
-							};
-						}
-					}
-				}
-			}
-		}
-	}
-
-	return { state: "success", data: response };
-}
-
-jQuery.extend( {
-
-	// Counter for holding the number of active queries
-	active: 0,
-
-	// Last-Modified header cache for next request
-	lastModified: {},
-	etag: {},
-
-	ajaxSettings: {
-		url: location.href,
-		type: "GET",
-		isLocal: rlocalProtocol.test( location.protocol ),
-		global: true,
-		processData: true,
-		async: true,
-		contentType: "application/x-www-form-urlencoded; charset=UTF-8",
-
-		/*
-		timeout: 0,
-		data: null,
-		dataType: null,
-		username: null,
-		password: null,
-		cache: null,
-		throws: false,
-		traditional: false,
-		headers: {},
-		*/
-
-		accepts: {
-			"*": allTypes,
-			text: "text/plain",
-			html: "text/html",
-			xml: "application/xml, text/xml",
-			json: "application/json, text/javascript"
-		},
-
-		contents: {
-			xml: /\bxml\b/,
-			html: /\bhtml/,
-			json: /\bjson\b/
-		},
-
-		responseFields: {
-			xml: "responseXML",
-			text: "responseText",
-			json: "responseJSON"
-		},
-
-		// Data converters
-		// Keys separate source (or catchall "*") and destination types with a single space
-		converters: {
-
-			// Convert anything to text
-			"* text": String,
-
-			// Text to html (true = no transformation)
-			"text html": true,
-
-			// Evaluate text as a json expression
-			"text json": JSON.parse,
-
-			// Parse text as xml
-			"text xml": jQuery.parseXML
-		},
-
-		// For options that shouldn't be deep extended:
-		// you can add your own custom options here if
-		// and when you create one that shouldn't be
-		// deep extended (see ajaxExtend)
-		flatOptions: {
-			url: true,
-			context: true
-		}
-	},
-
-	// Creates a full fledged settings object into target
-	// with both ajaxSettings and settings fields.
-	// If target is omitted, writes into ajaxSettings.
-	ajaxSetup: function( target, settings ) {
-		return settings ?
-
-			// Building a settings object
-			ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) :
-
-			// Extending ajaxSettings
-			ajaxExtend( jQuery.ajaxSettings, target );
-	},
-
-	ajaxPrefilter: addToPrefiltersOrTransports( prefilters ),
-	ajaxTransport: addToPrefiltersOrTransports( transports ),
-
-	// Main method
-	ajax: function( url, options ) {
-
-		// If url is an object, simulate pre-1.5 signature
-		if ( typeof url === "object" ) {
-			options = url;
-			url = undefined;
-		}
-
-		// Force options to be an object
-		options = options || {};
-
-		var transport,
-
-			// URL without anti-cache param
-			cacheURL,
-
-			// Response headers
-			responseHeadersString,
-			responseHeaders,
-
-			// timeout handle
-			timeoutTimer,
-
-			// Url cleanup var
-			urlAnchor,
-
-			// Request state (becomes false upon send and true upon completion)
-			completed,
-
-			// To know if global events are to be dispatched
-			fireGlobals,
-
-			// Loop variable
-			i,
-
-			// uncached part of the url
-			uncached,
-
-			// Create the final options object
-			s = jQuery.ajaxSetup( {}, options ),
-
-			// Callbacks context
-			callbackContext = s.context || s,
-
-			// Context for global events is callbackContext if it is a DOM node or jQuery collection
-			globalEventContext = s.context &&
-				( callbackContext.nodeType || callbackContext.jquery ) ?
-					jQuery( callbackContext ) :
-					jQuery.event,
-
-			// Deferreds
-			deferred = jQuery.Deferred(),
-			completeDeferred = jQuery.Callbacks( "once memory" ),
-
-			// Status-dependent callbacks
-			statusCode = s.statusCode || {},
-
-			// Headers (they are sent all at once)
-			requestHeaders = {},
-			requestHeadersNames = {},
-
-			// Default abort message
-			strAbort = "canceled",
-
-			// Fake xhr
-			jqXHR = {
-				readyState: 0,
-
-				// Builds headers hashtable if needed
-				getResponseHeader: function( key ) {
-					var match;
-					if ( completed ) {
-						if ( !responseHeaders ) {
-							responseHeaders = {};
-							while ( ( match = rheaders.exec( responseHeadersString ) ) ) {
-								responseHeaders[ match[ 1 ].toLowerCase() + " " ] =
-									( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] )
-										.concat( match[ 2 ] );
-							}
-						}
-						match = responseHeaders[ key.toLowerCase() + " " ];
-					}
-					return match == null ? null : match.join( ", " );
-				},
-
-				// Raw string
-				getAllResponseHeaders: function() {
-					return completed ? responseHeadersString : null;
-				},
-
-				// Caches the header
-				setRequestHeader: function( name, value ) {
-					if ( completed == null ) {
-						name = requestHeadersNames[ name.toLowerCase() ] =
-							requestHeadersNames[ name.toLowerCase() ] || name;
-						requestHeaders[ name ] = value;
-					}
-					return this;
-				},
-
-				// Overrides response content-type header
-				overrideMimeType: function( type ) {
-					if ( completed == null ) {
-						s.mimeType = type;
-					}
-					return this;
-				},
-
-				// Status-dependent callbacks
-				statusCode: function( map ) {
-					var code;
-					if ( map ) {
-						if ( completed ) {
-
-							// Execute the appropriate callbacks
-							jqXHR.always( map[ jqXHR.status ] );
-						} else {
-
-							// Lazy-add the new callbacks in a way that preserves old ones
-							for ( code in map ) {
-								statusCode[ code ] = [ statusCode[ code ], map[ code ] ];
-							}
-						}
-					}
-					return this;
-				},
-
-				// Cancel the request
-				abort: function( statusText ) {
-					var finalText = statusText || strAbort;
-					if ( transport ) {
-						transport.abort( finalText );
-					}
-					done( 0, finalText );
-					return this;
-				}
-			};
-
-		// Attach deferreds
-		deferred.promise( jqXHR );
-
-		// Add protocol if not provided (prefilters might expect it)
-		// Handle falsy url in the settings object (#10093: consistency with old signature)
-		// We also use the url parameter if available
-		s.url = ( ( url || s.url || location.href ) + "" )
-			.replace( rprotocol, location.protocol + "//" );
-
-		// Alias method option to type as per ticket #12004
-		s.type = options.method || options.type || s.method || s.type;
-
-		// Extract dataTypes list
-		s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ];
-
-		// A cross-domain request is in order when the origin doesn't match the current origin.
-		if ( s.crossDomain == null ) {
-			urlAnchor = document.createElement( "a" );
-
-			// Support: IE <=8 - 11, Edge 12 - 15
-			// IE throws exception on accessing the href property if url is malformed,
-			// e.g. http://example.com:80x/
-			try {
-				urlAnchor.href = s.url;
-
-				// Support: IE <=8 - 11 only
-				// Anchor's host property isn't correctly set when s.url is relative
-				urlAnchor.href = urlAnchor.href;
-				s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !==
-					urlAnchor.protocol + "//" + urlAnchor.host;
-			} catch ( e ) {
-
-				// If there is an error parsing the URL, assume it is crossDomain,
-				// it can be rejected by the transport if it is invalid
-				s.crossDomain = true;
-			}
-		}
-
-		// Convert data if not already a string
-		if ( s.data && s.processData && typeof s.data !== "string" ) {
-			s.data = jQuery.param( s.data, s.traditional );
-		}
-
-		// Apply prefilters
-		inspectPrefiltersOrTransports( prefilters, s, options, jqXHR );
-
-		// If request was aborted inside a prefilter, stop there
-		if ( completed ) {
-			return jqXHR;
-		}
-
-		// We can fire global events as of now if asked to
-		// Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118)
-		fireGlobals = jQuery.event && s.global;
-
-		// Watch for a new set of requests
-		if ( fireGlobals && jQuery.active++ === 0 ) {
-			jQuery.event.trigger( "ajaxStart" );
-		}
-
-		// Uppercase the type
-		s.type = s.type.toUpperCase();
-
-		// Determine if request has content
-		s.hasContent = !rnoContent.test( s.type );
-
-		// Save the URL in case we're toying with the If-Modified-Since
-		// and/or If-None-Match header later on
-		// Remove hash to simplify url manipulation
-		cacheURL = s.url.replace( rhash, "" );
-
-		// More options handling for requests with no content
-		if ( !s.hasContent ) {
-
-			// Remember the hash so we can put it back
-			uncached = s.url.slice( cacheURL.length );
-
-			// If data is available and should be processed, append data to url
-			if ( s.data && ( s.processData || typeof s.data === "string" ) ) {
-				cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data;
-
-				// #9682: remove data so that it's not used in an eventual retry
-				delete s.data;
-			}
-
-			// Add or update anti-cache param if needed
-			if ( s.cache === false ) {
-				cacheURL = cacheURL.replace( rantiCache, "$1" );
-				uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce.guid++ ) +
-					uncached;
-			}
-
-			// Put hash and anti-cache on the URL that will be requested (gh-1732)
-			s.url = cacheURL + uncached;
-
-		// Change '%20' to '+' if this is encoded form body content (gh-2658)
-		} else if ( s.data && s.processData &&
-			( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) {
-			s.data = s.data.replace( r20, "+" );
-		}
-
-		// Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode.
-		if ( s.ifModified ) {
-			if ( jQuery.lastModified[ cacheURL ] ) {
-				jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] );
-			}
-			if ( jQuery.etag[ cacheURL ] ) {
-				jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] );
-			}
-		}
-
-		// Set the correct header, if data is being sent
-		if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) {
-			jqXHR.setRequestHeader( "Content-Type", s.contentType );
-		}
-
-		// Set the Accepts header for the server, depending on the dataType
-		jqXHR.setRequestHeader(
-			"Accept",
-			s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ?
-				s.accepts[ s.dataTypes[ 0 ] ] +
-					( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) :
-				s.accepts[ "*" ]
-		);
-
-		// Check for headers option
-		for ( i in s.headers ) {
-			jqXHR.setRequestHeader( i, s.headers[ i ] );
-		}
-
-		// Allow custom headers/mimetypes and early abort
-		if ( s.beforeSend &&
-			( s.beforeSend.call( callbackContext, jqXHR, s ) === false || completed ) ) {
-
-			// Abort if not done already and return
-			return jqXHR.abort();
-		}
-
-		// Aborting is no longer a cancellation
-		strAbort = "abort";
-
-		// Install callbacks on deferreds
-		completeDeferred.add( s.complete );
-		jqXHR.done( s.success );
-		jqXHR.fail( s.error );
-
-		// Get transport
-		transport = inspectPrefiltersOrTransports( transports, s, options, jqXHR );
-
-		// If no transport, we auto-abort
-		if ( !transport ) {
-			done( -1, "No Transport" );
-		} else {
-			jqXHR.readyState = 1;
-
-			// Send global event
-			if ( fireGlobals ) {
-				globalEventContext.trigger( "ajaxSend", [ jqXHR, s ] );
-			}
-
-			// If request was aborted inside ajaxSend, stop there
-			if ( completed ) {
-				return jqXHR;
-			}
-
-			// Timeout
-			if ( s.async && s.timeout > 0 ) {
-				timeoutTimer = window.setTimeout( function() {
-					jqXHR.abort( "timeout" );
-				}, s.timeout );
-			}
-
-			try {
-				completed = false;
-				transport.send( requestHeaders, done );
-			} catch ( e ) {
-
-				// Rethrow post-completion exceptions
-				if ( completed ) {
-					throw e;
-				}
-
-				// Propagate others as results
-				done( -1, e );
-			}
-		}
-
-		// Callback for when everything is done
-		function done( status, nativeStatusText, responses, headers ) {
-			var isSuccess, success, error, response, modified,
-				statusText = nativeStatusText;
-
-			// Ignore repeat invocations
-			if ( completed ) {
-				return;
-			}
-
-			completed = true;
-
-			// Clear timeout if it exists
-			if ( timeoutTimer ) {
-				window.clearTimeout( timeoutTimer );
-			}
-
-			// Dereference transport for early garbage collection
-			// (no matter how long the jqXHR object will be used)
-			transport = undefined;
-
-			// Cache response headers
-			responseHeadersString = headers || "";
-
-			// Set readyState
-			jqXHR.readyState = status > 0 ? 4 : 0;
-
-			// Determine if successful
-			isSuccess = status >= 200 && status < 300 || status === 304;
-
-			// Get response data
-			if ( responses ) {
-				response = ajaxHandleResponses( s, jqXHR, responses );
-			}
-
-			// Use a noop converter for missing script
-			if ( !isSuccess && jQuery.inArray( "script", s.dataTypes ) > -1 ) {
-				s.converters[ "text script" ] = function() {};
-			}
-
-			// Convert no matter what (that way responseXXX fields are always set)
-			response = ajaxConvert( s, response, jqXHR, isSuccess );
-
-			// If successful, handle type chaining
-			if ( isSuccess ) {
-
-				// Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode.
-				if ( s.ifModified ) {
-					modified = jqXHR.getResponseHeader( "Last-Modified" );
-					if ( modified ) {
-						jQuery.lastModified[ cacheURL ] = modified;
-					}
-					modified = jqXHR.getResponseHeader( "etag" );
-					if ( modified ) {
-						jQuery.etag[ cacheURL ] = modified;
-					}
-				}
-
-				// if no content
-				if ( status === 204 || s.type === "HEAD" ) {
-					statusText = "nocontent";
-
-				// if not modified
-				} else if ( status === 304 ) {
-					statusText = "notmodified";
-
-				// If we have data, let's convert it
-				} else {
-					statusText = response.state;
-					success = response.data;
-					error = response.error;
-					isSuccess = !error;
-				}
-			} else {
-
-				// Extract error from statusText and normalize for non-aborts
-				error = statusText;
-				if ( status || !statusText ) {
-					statusText = "error";
-					if ( status < 0 ) {
-						status = 0;
-					}
-				}
-			}
-
-			// Set data for the fake xhr object
-			jqXHR.status = status;
-			jqXHR.statusText = ( nativeStatusText || statusText ) + "";
-
-			// Success/Error
-			if ( isSuccess ) {
-				deferred.resolveWith( callbackContext, [ success, statusText, jqXHR ] );
-			} else {
-				deferred.rejectWith( callbackContext, [ jqXHR, statusText, error ] );
-			}
-
-			// Status-dependent callbacks
-			jqXHR.statusCode( statusCode );
-			statusCode = undefined;
-
-			if ( fireGlobals ) {
-				globalEventContext.trigger( isSuccess ? "ajaxSuccess" : "ajaxError",
-					[ jqXHR, s, isSuccess ? success : error ] );
-			}
-
-			// Complete
-			completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] );
-
-			if ( fireGlobals ) {
-				globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] );
-
-				// Handle the global AJAX counter
-				if ( !( --jQuery.active ) ) {
-					jQuery.event.trigger( "ajaxStop" );
-				}
-			}
-		}
-
-		return jqXHR;
-	},
-
-	getJSON: function( url, data, callback ) {
-		return jQuery.get( url, data, callback, "json" );
-	},
-
-	getScript: function( url, callback ) {
-		return jQuery.get( url, undefined, callback, "script" );
-	}
-} );
-
-jQuery.each( [ "get", "post" ], function( _i, method ) {
-	jQuery[ method ] = function( url, data, callback, type ) {
-
-		// Shift arguments if data argument was omitted
-		if ( isFunction( data ) ) {
-			type = type || callback;
-			callback = data;
-			data = undefined;
-		}
-
-		// The url can be an options object (which then must have .url)
-		return jQuery.ajax( jQuery.extend( {
-			url: url,
-			type: method,
-			dataType: type,
-			data: data,
-			success: callback
-		}, jQuery.isPlainObject( url ) && url ) );
-	};
-} );
-
-jQuery.ajaxPrefilter( function( s ) {
-	var i;
-	for ( i in s.headers ) {
-		if ( i.toLowerCase() === "content-type" ) {
-			s.contentType = s.headers[ i ] || "";
-		}
-	}
-} );
-
-
-jQuery._evalUrl = function( url, options, doc ) {
-	return jQuery.ajax( {
-		url: url,
-
-		// Make this explicit, since user can override this through ajaxSetup (#11264)
-		type: "GET",
-		dataType: "script",
-		cache: true,
-		async: false,
-		global: false,
-
-		// Only evaluate the response if it is successful (gh-4126)
-		// dataFilter is not invoked for failure responses, so using it instead
-		// of the default converter is kludgy but it works.
-		converters: {
-			"text script": function() {}
-		},
-		dataFilter: function( response ) {
-			jQuery.globalEval( response, options, doc );
-		}
-	} );
-};
-
-
-jQuery.fn.extend( {
-	wrapAll: function( html ) {
-		var wrap;
-
-		if ( this[ 0 ] ) {
-			if ( isFunction( html ) ) {
-				html = html.call( this[ 0 ] );
-			}
-
-			// The elements to wrap the target around
-			wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true );
-
-			if ( this[ 0 ].parentNode ) {
-				wrap.insertBefore( this[ 0 ] );
-			}
-
-			wrap.map( function() {
-				var elem = this;
-
-				while ( elem.firstElementChild ) {
-					elem = elem.firstElementChild;
-				}
-
-				return elem;
-			} ).append( this );
-		}
-
-		return this;
-	},
-
-	wrapInner: function( html ) {
-		if ( isFunction( html ) ) {
-			return this.each( function( i ) {
-				jQuery( this ).wrapInner( html.call( this, i ) );
-			} );
-		}
-
-		return this.each( function() {
-			var self = jQuery( this ),
-				contents = self.contents();
-
-			if ( contents.length ) {
-				contents.wrapAll( html );
-
-			} else {
-				self.append( html );
-			}
-		} );
-	},
-
-	wrap: function( html ) {
-		var htmlIsFunction = isFunction( html );
-
-		return this.each( function( i ) {
-			jQuery( this ).wrapAll( htmlIsFunction ? html.call( this, i ) : html );
-		} );
-	},
-
-	unwrap: function( selector ) {
-		this.parent( selector ).not( "body" ).each( function() {
-			jQuery( this ).replaceWith( this.childNodes );
-		} );
-		return this;
-	}
-} );
-
-
-jQuery.expr.pseudos.hidden = function( elem ) {
-	return !jQuery.expr.pseudos.visible( elem );
-};
-jQuery.expr.pseudos.visible = function( elem ) {
-	return !!( elem.offsetWidth || elem.offsetHeight || elem.getClientRects().length );
-};
-
-
-
-
-jQuery.ajaxSettings.xhr = function() {
-	try {
-		return new window.XMLHttpRequest();
-	} catch ( e ) {}
-};
-
-var xhrSuccessStatus = {
-
-		// File protocol always yields status code 0, assume 200
-		0: 200,
-
-		// Support: IE <=9 only
-		// #1450: sometimes IE returns 1223 when it should be 204
-		1223: 204
-	},
-	xhrSupported = jQuery.ajaxSettings.xhr();
-
-support.cors = !!xhrSupported && ( "withCredentials" in xhrSupported );
-support.ajax = xhrSupported = !!xhrSupported;
-
-jQuery.ajaxTransport( function( options ) {
-	var callback, errorCallback;
-
-	// Cross domain only allowed if supported through XMLHttpRequest
-	if ( support.cors || xhrSupported && !options.crossDomain ) {
-		return {
-			send: function( headers, complete ) {
-				var i,
-					xhr = options.xhr();
-
-				xhr.open(
-					options.type,
-					options.url,
-					options.async,
-					options.username,
-					options.password
-				);
-
-				// Apply custom fields if provided
-				if ( options.xhrFields ) {
-					for ( i in options.xhrFields ) {
-						xhr[ i ] = options.xhrFields[ i ];
-					}
-				}
-
-				// Override mime type if needed
-				if ( options.mimeType && xhr.overrideMimeType ) {
-					xhr.overrideMimeType( options.mimeType );
-				}
-
-				// X-Requested-With header
-				// For cross-domain requests, seeing as conditions for a preflight are
-				// akin to a jigsaw puzzle, we simply never set it to be sure.
-				// (it can always be set on a per-request basis or even using ajaxSetup)
-				// For same-domain requests, won't change header if already provided.
-				if ( !options.crossDomain && !headers[ "X-Requested-With" ] ) {
-					headers[ "X-Requested-With" ] = "XMLHttpRequest";
-				}
-
-				// Set headers
-				for ( i in headers ) {
-					xhr.setRequestHeader( i, headers[ i ] );
-				}
-
-				// Callback
-				callback = function( type ) {
-					return function() {
-						if ( callback ) {
-							callback = errorCallback = xhr.onload =
-								xhr.onerror = xhr.onabort = xhr.ontimeout =
-									xhr.onreadystatechange = null;
-
-							if ( type === "abort" ) {
-								xhr.abort();
-							} else if ( type === "error" ) {
-
-								// Support: IE <=9 only
-								// On a manual native abort, IE9 throws
-								// errors on any property access that is not readyState
-								if ( typeof xhr.status !== "number" ) {
-									complete( 0, "error" );
-								} else {
-									complete(
-
-										// File: protocol always yields status 0; see #8605, #14207
-										xhr.status,
-										xhr.statusText
-									);
-								}
-							} else {
-								complete(
-									xhrSuccessStatus[ xhr.status ] || xhr.status,
-									xhr.statusText,
-
-									// Support: IE <=9 only
-									// IE9 has no XHR2 but throws on binary (trac-11426)
-									// For XHR2 non-text, let the caller handle it (gh-2498)
-									( xhr.responseType || "text" ) !== "text"  ||
-									typeof xhr.responseText !== "string" ?
-										{ binary: xhr.response } :
-										{ text: xhr.responseText },
-									xhr.getAllResponseHeaders()
-								);
-							}
-						}
-					};
-				};
-
-				// Listen to events
-				xhr.onload = callback();
-				errorCallback = xhr.onerror = xhr.ontimeout = callback( "error" );
-
-				// Support: IE 9 only
-				// Use onreadystatechange to replace onabort
-				// to handle uncaught aborts
-				if ( xhr.onabort !== undefined ) {
-					xhr.onabort = errorCallback;
-				} else {
-					xhr.onreadystatechange = function() {
-
-						// Check readyState before timeout as it changes
-						if ( xhr.readyState === 4 ) {
-
-							// Allow onerror to be called first,
-							// but that will not handle a native abort
-							// Also, save errorCallback to a variable
-							// as xhr.onerror cannot be accessed
-							window.setTimeout( function() {
-								if ( callback ) {
-									errorCallback();
-								}
-							} );
-						}
-					};
-				}
-
-				// Create the abort callback
-				callback = callback( "abort" );
-
-				try {
-
-					// Do send the request (this may raise an exception)
-					xhr.send( options.hasContent && options.data || null );
-				} catch ( e ) {
-
-					// #14683: Only rethrow if this hasn't been notified as an error yet
-					if ( callback ) {
-						throw e;
-					}
-				}
-			},
-
-			abort: function() {
-				if ( callback ) {
-					callback();
-				}
-			}
-		};
-	}
-} );
-
-
-
-
-// Prevent auto-execution of scripts when no explicit dataType was provided (See gh-2432)
-jQuery.ajaxPrefilter( function( s ) {
-	if ( s.crossDomain ) {
-		s.contents.script = false;
-	}
-} );
-
-// Install script dataType
-jQuery.ajaxSetup( {
-	accepts: {
-		script: "text/javascript, application/javascript, " +
-			"application/ecmascript, application/x-ecmascript"
-	},
-	contents: {
-		script: /\b(?:java|ecma)script\b/
-	},
-	converters: {
-		"text script": function( text ) {
-			jQuery.globalEval( text );
-			return text;
-		}
-	}
-} );
-
-// Handle cache's special case and crossDomain
-jQuery.ajaxPrefilter( "script", function( s ) {
-	if ( s.cache === undefined ) {
-		s.cache = false;
-	}
-	if ( s.crossDomain ) {
-		s.type = "GET";
-	}
-} );
-
-// Bind script tag hack transport
-jQuery.ajaxTransport( "script", function( s ) {
-
-	// This transport only deals with cross domain or forced-by-attrs requests
-	if ( s.crossDomain || s.scriptAttrs ) {
-		var script, callback;
-		return {
-			send: function( _, complete ) {
-				script = jQuery( "<script>" )
-					.attr( s.scriptAttrs || {} )
-					.prop( { charset: s.scriptCharset, src: s.url } )
-					.on( "load error", callback = function( evt ) {
-						script.remove();
-						callback = null;
-						if ( evt ) {
-							complete( evt.type === "error" ? 404 : 200, evt.type );
-						}
-					} );
-
-				// Use native DOM manipulation to avoid our domManip AJAX trickery
-				document.head.appendChild( script[ 0 ] );
-			},
-			abort: function() {
-				if ( callback ) {
-					callback();
-				}
-			}
-		};
-	}
-} );
-
-
-
-
-var oldCallbacks = [],
-	rjsonp = /(=)\?(?=&|$)|\?\?/;
-
-// Default jsonp settings
-jQuery.ajaxSetup( {
-	jsonp: "callback",
-	jsonpCallback: function() {
-		var callback = oldCallbacks.pop() || ( jQuery.expando + "_" + ( nonce.guid++ ) );
-		this[ callback ] = true;
-		return callback;
-	}
-} );
-
-// Detect, normalize options and install callbacks for jsonp requests
-jQuery.ajaxPrefilter( "json jsonp", function( s, originalSettings, jqXHR ) {
-
-	var callbackName, overwritten, responseContainer,
-		jsonProp = s.jsonp !== false && ( rjsonp.test( s.url ) ?
-			"url" :
-			typeof s.data === "string" &&
-				( s.contentType || "" )
-					.indexOf( "application/x-www-form-urlencoded" ) === 0 &&
-				rjsonp.test( s.data ) && "data"
-		);
-
-	// Handle iff the expected data type is "jsonp" or we have a parameter to set
-	if ( jsonProp || s.dataTypes[ 0 ] === "jsonp" ) {
-
-		// Get callback name, remembering preexisting value associated with it
-		callbackName = s.jsonpCallback = isFunction( s.jsonpCallback ) ?
-			s.jsonpCallback() :
-			s.jsonpCallback;
-
-		// Insert callback into url or form data
-		if ( jsonProp ) {
-			s[ jsonProp ] = s[ jsonProp ].replace( rjsonp, "$1" + callbackName );
-		} else if ( s.jsonp !== false ) {
-			s.url += ( rquery.test( s.url ) ? "&" : "?" ) + s.jsonp + "=" + callbackName;
-		}
-
-		// Use data converter to retrieve json after script execution
-		s.converters[ "script json" ] = function() {
-			if ( !responseContainer ) {
-				jQuery.error( callbackName + " was not called" );
-			}
-			return responseContainer[ 0 ];
-		};
-
-		// Force json dataType
-		s.dataTypes[ 0 ] = "json";
-
-		// Install callback
-		overwritten = window[ callbackName ];
-		window[ callbackName ] = function() {
-			responseContainer = arguments;
-		};
-
-		// Clean-up function (fires after converters)
-		jqXHR.always( function() {
-
-			// If previous value didn't exist - remove it
-			if ( overwritten === undefined ) {
-				jQuery( window ).removeProp( callbackName );
-
-			// Otherwise restore preexisting value
-			} else {
-				window[ callbackName ] = overwritten;
-			}
-
-			// Save back as free
-			if ( s[ callbackName ] ) {
-
-				// Make sure that re-using the options doesn't screw things around
-				s.jsonpCallback = originalSettings.jsonpCallback;
-
-				// Save the callback name for future use
-				oldCallbacks.push( callbackName );
-			}
-
-			// Call if it was a function and we have a response
-			if ( responseContainer && isFunction( overwritten ) ) {
-				overwritten( responseContainer[ 0 ] );
-			}
-
-			responseContainer = overwritten = undefined;
-		} );
-
-		// Delegate to script
-		return "script";
-	}
-} );
-
-
-
-
-// Support: Safari 8 only
-// In Safari 8 documents created via document.implementation.createHTMLDocument
-// collapse sibling forms: the second one becomes a child of the first one.
-// Because of that, this security measure has to be disabled in Safari 8.
-// https://bugs.webkit.org/show_bug.cgi?id=137337
-support.createHTMLDocument = ( function() {
-	var body = document.implementation.createHTMLDocument( "" ).body;
-	body.innerHTML = "<form></form><form></form>";
-	return body.childNodes.length === 2;
-} )();
-
-
-// Argument "data" should be string of html
-// context (optional): If specified, the fragment will be created in this context,
-// defaults to document
-// keepScripts (optional): If true, will include scripts passed in the html string
-jQuery.parseHTML = function( data, context, keepScripts ) {
-	if ( typeof data !== "string" ) {
-		return [];
-	}
-	if ( typeof context === "boolean" ) {
-		keepScripts = context;
-		context = false;
-	}
-
-	var base, parsed, scripts;
-
-	if ( !context ) {
-
-		// Stop scripts or inline event handlers from being executed immediately
-		// by using document.implementation
-		if ( support.createHTMLDocument ) {
-			context = document.implementation.createHTMLDocument( "" );
-
-			// Set the base href for the created document
-			// so any parsed elements with URLs
-			// are based on the document's URL (gh-2965)
-			base = context.createElement( "base" );
-			base.href = document.location.href;
-			context.head.appendChild( base );
-		} else {
-			context = document;
-		}
-	}
-
-	parsed = rsingleTag.exec( data );
-	scripts = !keepScripts && [];
-
-	// Single tag
-	if ( parsed ) {
-		return [ context.createElement( parsed[ 1 ] ) ];
-	}
-
-	parsed = buildFragment( [ data ], context, scripts );
-
-	if ( scripts && scripts.length ) {
-		jQuery( scripts ).remove();
-	}
-
-	return jQuery.merge( [], parsed.childNodes );
-};
-
-
-/**
- * Load a url into a page
- */
-jQuery.fn.load = function( url, params, callback ) {
-	var selector, type, response,
-		self = this,
-		off = url.indexOf( " " );
-
-	if ( off > -1 ) {
-		selector = stripAndCollapse( url.slice( off ) );
-		url = url.slice( 0, off );
-	}
-
-	// If it's a function
-	if ( isFunction( params ) ) {
-
-		// We assume that it's the callback
-		callback = params;
-		params = undefined;
-
-	// Otherwise, build a param string
-	} else if ( params && typeof params === "object" ) {
-		type = "POST";
-	}
-
-	// If we have elements to modify, make the request
-	if ( self.length > 0 ) {
-		jQuery.ajax( {
-			url: url,
-
-			// If "type" variable is undefined, then "GET" method will be used.
-			// Make value of this field explicit since
-			// user can override it through ajaxSetup method
-			type: type || "GET",
-			dataType: "html",
-			data: params
-		} ).done( function( responseText ) {
-
-			// Save response for use in complete callback
-			response = arguments;
-
-			self.html( selector ?
-
-				// If a selector was specified, locate the right elements in a dummy div
-				// Exclude scripts to avoid IE 'Permission Denied' errors
-				jQuery( "<div>" ).append( jQuery.parseHTML( responseText ) ).find( selector ) :
-
-				// Otherwise use the full result
-				responseText );
-
-		// If the request succeeds, this function gets "data", "status", "jqXHR"
-		// but they are ignored because response was set above.
-		// If it fails, this function gets "jqXHR", "status", "error"
-		} ).always( callback && function( jqXHR, status ) {
-			self.each( function() {
-				callback.apply( this, response || [ jqXHR.responseText, status, jqXHR ] );
-			} );
-		} );
-	}
-
-	return this;
-};
-
-
-
-
-jQuery.expr.pseudos.animated = function( elem ) {
-	return jQuery.grep( jQuery.timers, function( fn ) {
-		return elem === fn.elem;
-	} ).length;
-};
-
-
-
-
-jQuery.offset = {
-	setOffset: function( elem, options, i ) {
-		var curPosition, curLeft, curCSSTop, curTop, curOffset, curCSSLeft, calculatePosition,
-			position = jQuery.css( elem, "position" ),
-			curElem = jQuery( elem ),
-			props = {};
-
-		// Set position first, in-case top/left are set even on static elem
-		if ( position === "static" ) {
-			elem.style.position = "relative";
-		}
-
-		curOffset = curElem.offset();
-		curCSSTop = jQuery.css( elem, "top" );
-		curCSSLeft = jQuery.css( elem, "left" );
-		calculatePosition = ( position === "absolute" || position === "fixed" ) &&
-			( curCSSTop + curCSSLeft ).indexOf( "auto" ) > -1;
-
-		// Need to be able to calculate position if either
-		// top or left is auto and position is either absolute or fixed
-		if ( calculatePosition ) {
-			curPosition = curElem.position();
-			curTop = curPosition.top;
-			curLeft = curPosition.left;
-
-		} else {
-			curTop = parseFloat( curCSSTop ) || 0;
-			curLeft = parseFloat( curCSSLeft ) || 0;
-		}
-
-		if ( isFunction( options ) ) {
-
-			// Use jQuery.extend here to allow modification of coordinates argument (gh-1848)
-			options = options.call( elem, i, jQuery.extend( {}, curOffset ) );
-		}
-
-		if ( options.top != null ) {
-			props.top = ( options.top - curOffset.top ) + curTop;
-		}
-		if ( options.left != null ) {
-			props.left = ( options.left - curOffset.left ) + curLeft;
-		}
-
-		if ( "using" in options ) {
-			options.using.call( elem, props );
-
-		} else {
-			if ( typeof props.top === "number" ) {
-				props.top += "px";
-			}
-			if ( typeof props.left === "number" ) {
-				props.left += "px";
-			}
-			curElem.css( props );
-		}
-	}
-};
-
-jQuery.fn.extend( {
-
-	// offset() relates an element's border box to the document origin
-	offset: function( options ) {
-
-		// Preserve chaining for setter
-		if ( arguments.length ) {
-			return options === undefined ?
-				this :
-				this.each( function( i ) {
-					jQuery.offset.setOffset( this, options, i );
-				} );
-		}
-
-		var rect, win,
-			elem = this[ 0 ];
-
-		if ( !elem ) {
-			return;
-		}
-
-		// Return zeros for disconnected and hidden (display: none) elements (gh-2310)
-		// Support: IE <=11 only
-		// Running getBoundingClientRect on a
-		// disconnected node in IE throws an error
-		if ( !elem.getClientRects().length ) {
-			return { top: 0, left: 0 };
-		}
-
-		// Get document-relative position by adding viewport scroll to viewport-relative gBCR
-		rect = elem.getBoundingClientRect();
-		win = elem.ownerDocument.defaultView;
-		return {
-			top: rect.top + win.pageYOffset,
-			left: rect.left + win.pageXOffset
-		};
-	},
-
-	// position() relates an element's margin box to its offset parent's padding box
-	// This corresponds to the behavior of CSS absolute positioning
-	position: function() {
-		if ( !this[ 0 ] ) {
-			return;
-		}
-
-		var offsetParent, offset, doc,
-			elem = this[ 0 ],
-			parentOffset = { top: 0, left: 0 };
-
-		// position:fixed elements are offset from the viewport, which itself always has zero offset
-		if ( jQuery.css( elem, "position" ) === "fixed" ) {
-
-			// Assume position:fixed implies availability of getBoundingClientRect
-			offset = elem.getBoundingClientRect();
-
-		} else {
-			offset = this.offset();
-
-			// Account for the *real* offset parent, which can be the document or its root element
-			// when a statically positioned element is identified
-			doc = elem.ownerDocument;
-			offsetParent = elem.offsetParent || doc.documentElement;
-			while ( offsetParent &&
-				( offsetParent === doc.body || offsetParent === doc.documentElement ) &&
-				jQuery.css( offsetParent, "position" ) === "static" ) {
-
-				offsetParent = offsetParent.parentNode;
-			}
-			if ( offsetParent && offsetParent !== elem && offsetParent.nodeType === 1 ) {
-
-				// Incorporate borders into its offset, since they are outside its content origin
-				parentOffset = jQuery( offsetParent ).offset();
-				parentOffset.top += jQuery.css( offsetParent, "borderTopWidth", true );
-				parentOffset.left += jQuery.css( offsetParent, "borderLeftWidth", true );
-			}
-		}
-
-		// Subtract parent offsets and element margins
-		return {
-			top: offset.top - parentOffset.top - jQuery.css( elem, "marginTop", true ),
-			left: offset.left - parentOffset.left - jQuery.css( elem, "marginLeft", true )
-		};
-	},
-
-	// This method will return documentElement in the following cases:
-	// 1) For the element inside the iframe without offsetParent, this method will return
-	//    documentElement of the parent window
-	// 2) For the hidden or detached element
-	// 3) For body or html element, i.e. in case of the html node - it will return itself
-	//
-	// but those exceptions were never presented as a real life use-cases
-	// and might be considered as more preferable results.
-	//
-	// This logic, however, is not guaranteed and can change at any point in the future
-	offsetParent: function() {
-		return this.map( function() {
-			var offsetParent = this.offsetParent;
-
-			while ( offsetParent && jQuery.css( offsetParent, "position" ) === "static" ) {
-				offsetParent = offsetParent.offsetParent;
-			}
-
-			return offsetParent || documentElement;
-		} );
-	}
-} );
-
-// Create scrollLeft and scrollTop methods
-jQuery.each( { scrollLeft: "pageXOffset", scrollTop: "pageYOffset" }, function( method, prop ) {
-	var top = "pageYOffset" === prop;
-
-	jQuery.fn[ method ] = function( val ) {
-		return access( this, function( elem, method, val ) {
-
-			// Coalesce documents and windows
-			var win;
-			if ( isWindow( elem ) ) {
-				win = elem;
-			} else if ( elem.nodeType === 9 ) {
-				win = elem.defaultView;
-			}
-
-			if ( val === undefined ) {
-				return win ? win[ prop ] : elem[ method ];
-			}
-
-			if ( win ) {
-				win.scrollTo(
-					!top ? val : win.pageXOffset,
-					top ? val : win.pageYOffset
-				);
-
-			} else {
-				elem[ method ] = val;
-			}
-		}, method, val, arguments.length );
-	};
-} );
-
-// Support: Safari <=7 - 9.1, Chrome <=37 - 49
-// Add the top/left cssHooks using jQuery.fn.position
-// Webkit bug: https://bugs.webkit.org/show_bug.cgi?id=29084
-// Blink bug: https://bugs.chromium.org/p/chromium/issues/detail?id=589347
-// getComputedStyle returns percent when specified for top/left/bottom/right;
-// rather than make the css module depend on the offset module, just check for it here
-jQuery.each( [ "top", "left" ], function( _i, prop ) {
-	jQuery.cssHooks[ prop ] = addGetHookIf( support.pixelPosition,
-		function( elem, computed ) {
-			if ( computed ) {
-				computed = curCSS( elem, prop );
-
-				// If curCSS returns percentage, fallback to offset
-				return rnumnonpx.test( computed ) ?
-					jQuery( elem ).position()[ prop ] + "px" :
-					computed;
-			}
-		}
-	);
-} );
-
-
-// Create innerHeight, innerWidth, height, width, outerHeight and outerWidth methods
-jQuery.each( { Height: "height", Width: "width" }, function( name, type ) {
-	jQuery.each( { padding: "inner" + name, content: type, "": "outer" + name },
-		function( defaultExtra, funcName ) {
-
-		// Margin is only for outerHeight, outerWidth
-		jQuery.fn[ funcName ] = function( margin, value ) {
-			var chainable = arguments.length && ( defaultExtra || typeof margin !== "boolean" ),
-				extra = defaultExtra || ( margin === true || value === true ? "margin" : "border" );
-
-			return access( this, function( elem, type, value ) {
-				var doc;
-
-				if ( isWindow( elem ) ) {
-
-					// $( window ).outerWidth/Height return w/h including scrollbars (gh-1729)
-					return funcName.indexOf( "outer" ) === 0 ?
-						elem[ "inner" + name ] :
-						elem.document.documentElement[ "client" + name ];
-				}
-
-				// Get document width or height
-				if ( elem.nodeType === 9 ) {
-					doc = elem.documentElement;
-
-					// Either scroll[Width/Height] or offset[Width/Height] or client[Width/Height],
-					// whichever is greatest
-					return Math.max(
-						elem.body[ "scroll" + name ], doc[ "scroll" + name ],
-						elem.body[ "offset" + name ], doc[ "offset" + name ],
-						doc[ "client" + name ]
-					);
-				}
-
-				return value === undefined ?
-
-					// Get width or height on the element, requesting but not forcing parseFloat
-					jQuery.css( elem, type, extra ) :
-
-					// Set width or height on the element
-					jQuery.style( elem, type, value, extra );
-			}, type, chainable ? margin : undefined, chainable );
-		};
-	} );
-} );
-
-
-jQuery.each( [
-	"ajaxStart",
-	"ajaxStop",
-	"ajaxComplete",
-	"ajaxError",
-	"ajaxSuccess",
-	"ajaxSend"
-], function( _i, type ) {
-	jQuery.fn[ type ] = function( fn ) {
-		return this.on( type, fn );
-	};
-} );
-
-
-
-
-jQuery.fn.extend( {
-
-	bind: function( types, data, fn ) {
-		return this.on( types, null, data, fn );
-	},
-	unbind: function( types, fn ) {
-		return this.off( types, null, fn );
-	},
-
-	delegate: function( selector, types, data, fn ) {
-		return this.on( types, selector, data, fn );
-	},
-	undelegate: function( selector, types, fn ) {
-
-		// ( namespace ) or ( selector, types [, fn] )
-		return arguments.length === 1 ?
-			this.off( selector, "**" ) :
-			this.off( types, selector || "**", fn );
-	},
-
-	hover: function( fnOver, fnOut ) {
-		return this.mouseenter( fnOver ).mouseleave( fnOut || fnOver );
-	}
-} );
-
-jQuery.each( ( "blur focus focusin focusout resize scroll click dblclick " +
-	"mousedown mouseup mousemove mouseover mouseout mouseenter mouseleave " +
-	"change select submit keydown keypress keyup contextmenu" ).split( " " ),
-	function( _i, name ) {
-
-		// Handle event binding
-		jQuery.fn[ name ] = function( data, fn ) {
-			return arguments.length > 0 ?
-				this.on( name, null, data, fn ) :
-				this.trigger( name );
-		};
-	} );
-
-
-
-
-// Support: Android <=4.0 only
-// Make sure we trim BOM and NBSP
-var rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g;
-
-// Bind a function to a context, optionally partially applying any
-// arguments.
-// jQuery.proxy is deprecated to promote standards (specifically Function#bind)
-// However, it is not slated for removal any time soon
-jQuery.proxy = function( fn, context ) {
-	var tmp, args, proxy;
-
-	if ( typeof context === "string" ) {
-		tmp = fn[ context ];
-		context = fn;
-		fn = tmp;
-	}
-
-	// Quick check to determine if target is callable, in the spec
-	// this throws a TypeError, but we will just return undefined.
-	if ( !isFunction( fn ) ) {
-		return undefined;
-	}
-
-	// Simulated bind
-	args = slice.call( arguments, 2 );
-	proxy = function() {
-		return fn.apply( context || this, args.concat( slice.call( arguments ) ) );
-	};
-
-	// Set the guid of unique handler to the same of original handler, so it can be removed
-	proxy.guid = fn.guid = fn.guid || jQuery.guid++;
-
-	return proxy;
-};
-
-jQuery.holdReady = function( hold ) {
-	if ( hold ) {
-		jQuery.readyWait++;
-	} else {
-		jQuery.ready( true );
-	}
-};
-jQuery.isArray = Array.isArray;
-jQuery.parseJSON = JSON.parse;
-jQuery.nodeName = nodeName;
-jQuery.isFunction = isFunction;
-jQuery.isWindow = isWindow;
-jQuery.camelCase = camelCase;
-jQuery.type = toType;
-
-jQuery.now = Date.now;
-
-jQuery.isNumeric = function( obj ) {
-
-	// As of jQuery 3.0, isNumeric is limited to
-	// strings and numbers (primitives or objects)
-	// that can be coerced to finite numbers (gh-2662)
-	var type = jQuery.type( obj );
-	return ( type === "number" || type === "string" ) &&
-
-		// parseFloat NaNs numeric-cast false positives ("")
-		// ...but misinterprets leading-number strings, particularly hex literals ("0x...")
-		// subtraction forces infinities to NaN
-		!isNaN( obj - parseFloat( obj ) );
-};
-
-jQuery.trim = function( text ) {
-	return text == null ?
-		"" :
-		( text + "" ).replace( rtrim, "" );
-};
-
-
-
-// Register as a named AMD module, since jQuery can be concatenated with other
-// files that may use define, but not via a proper concatenation script that
-// understands anonymous AMD modules. A named AMD is safest and most robust
-// way to register. Lowercase jquery is used because AMD module names are
-// derived from file names, and jQuery is normally delivered in a lowercase
-// file name. Do this after creating the global so that if an AMD module wants
-// to call noConflict to hide this version of jQuery, it will work.
-
-// Note that for maximum portability, libraries that are not jQuery should
-// declare themselves as anonymous modules, and avoid setting a global if an
-// AMD loader is present. jQuery is a special case. For more information, see
-// https://github.com/jrburke/requirejs/wiki/Updating-existing-libraries#wiki-anon
-
-if ( typeof define === "function" && define.amd ) {
-	define( "jquery", [], function() {
-		return jQuery;
-	} );
-}
-
-
-
-
-var
-
-	// Map over jQuery in case of overwrite
-	_jQuery = window.jQuery,
-
-	// Map over the $ in case of overwrite
-	_$ = window.$;
-
-jQuery.noConflict = function( deep ) {
-	if ( window.$ === jQuery ) {
-		window.$ = _$;
-	}
-
-	if ( deep && window.jQuery === jQuery ) {
-		window.jQuery = _jQuery;
-	}
-
-	return jQuery;
-};
-
-// Expose jQuery and $ identifiers, even in AMD
-// (#7102#comment:10, https://github.com/jquery/jquery/pull/557)
-// and CommonJS for browser emulators (#13566)
-if ( typeof noGlobal === "undefined" ) {
-	window.jQuery = window.$ = jQuery;
-}
-
-
-
-
-return jQuery;
-} );
diff --git a/_static/jquery.js b/_static/jquery.js
deleted file mode 100644
index b0614034a..000000000
--- a/_static/jquery.js
+++ /dev/null
@@ -1,2 +0,0 @@
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diff --git a/_static/jupyterlite_badge_logo.svg b/_static/jupyterlite_badge_logo.svg
new file mode 100644
index 000000000..5de36d7fd
--- /dev/null
+++ b/_static/jupyterlite_badge_logo.svg
@@ -0,0 +1,3 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
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diff --git a/_static/language_data.js b/_static/language_data.js
index ebe2f03bf..367b8ed81 100644
--- a/_static/language_data.js
+++ b/_static/language_data.js
@@ -5,15 +5,15 @@
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
 
-var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"];
+var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
 
 
-/* Non-minified version is copied as a separate JS file, is available */
+/* Non-minified version is copied as a separate JS file, if available */
 
 /**
  * Porter Stemmer
@@ -197,101 +197,3 @@ var Stemmer = function() {
   }
 }
 
-
-
-
-var splitChars = (function() {
-    var result = {};
-    var singles = [96, 180, 187, 191, 215, 247, 749, 885, 903, 907, 909, 930, 1014, 1648,
-         1748, 1809, 2416, 2473, 2481, 2526, 2601, 2609, 2612, 2615, 2653, 2702,
-         2706, 2729, 2737, 2740, 2857, 2865, 2868, 2910, 2928, 2948, 2961, 2971,
-         2973, 3085, 3089, 3113, 3124, 3213, 3217, 3241, 3252, 3295, 3341, 3345,
-         3369, 3506, 3516, 3633, 3715, 3721, 3736, 3744, 3748, 3750, 3756, 3761,
-         3781, 3912, 4239, 4347, 4681, 4695, 4697, 4745, 4785, 4799, 4801, 4823,
-         4881, 5760, 5901, 5997, 6313, 7405, 8024, 8026, 8028, 8030, 8117, 8125,
-         8133, 8181, 8468, 8485, 8487, 8489, 8494, 8527, 11311, 11359, 11687, 11695,
-         11703, 11711, 11719, 11727, 11735, 12448, 12539, 43010, 43014, 43019, 43587,
-         43696, 43713, 64286, 64297, 64311, 64317, 64319, 64322, 64325, 65141];
-    var i, j, start, end;
-    for (i = 0; i < singles.length; i++) {
-        result[singles[i]] = true;
-    }
-    var ranges = [[0, 47], [58, 64], [91, 94], [123, 169], [171, 177], [182, 184], [706, 709],
-         [722, 735], [741, 747], [751, 879], [888, 889], [894, 901], [1154, 1161],
-         [1318, 1328], [1367, 1368], [1370, 1376], [1416, 1487], [1515, 1519], [1523, 1568],
-         [1611, 1631], [1642, 1645], [1750, 1764], [1767, 1773], [1789, 1790], [1792, 1807],
-         [1840, 1868], [1958, 1968], [1970, 1983], [2027, 2035], [2038, 2041], [2043, 2047],
-         [2070, 2073], [2075, 2083], [2085, 2087], [2089, 2307], [2362, 2364], [2366, 2383],
-         [2385, 2391], [2402, 2405], [2419, 2424], [2432, 2436], [2445, 2446], [2449, 2450],
-         [2483, 2485], [2490, 2492], [2494, 2509], [2511, 2523], [2530, 2533], [2546, 2547],
-         [2554, 2564], [2571, 2574], [2577, 2578], [2618, 2648], [2655, 2661], [2672, 2673],
-         [2677, 2692], [2746, 2748], [2750, 2767], [2769, 2783], [2786, 2789], [2800, 2820],
-         [2829, 2830], [2833, 2834], [2874, 2876], [2878, 2907], [2914, 2917], [2930, 2946],
-         [2955, 2957], [2966, 2968], [2976, 2978], [2981, 2983], [2987, 2989], [3002, 3023],
-         [3025, 3045], [3059, 3076], [3130, 3132], [3134, 3159], [3162, 3167], [3170, 3173],
-         [3184, 3191], [3199, 3204], [3258, 3260], [3262, 3293], [3298, 3301], [3312, 3332],
-         [3386, 3388], [3390, 3423], [3426, 3429], [3446, 3449], [3456, 3460], [3479, 3481],
-         [3518, 3519], [3527, 3584], [3636, 3647], [3655, 3663], [3674, 3712], [3717, 3718],
-         [3723, 3724], [3726, 3731], [3752, 3753], [3764, 3772], [3774, 3775], [3783, 3791],
-         [3802, 3803], [3806, 3839], [3841, 3871], [3892, 3903], [3949, 3975], [3980, 4095],
-         [4139, 4158], [4170, 4175], [4182, 4185], [4190, 4192], [4194, 4196], [4199, 4205],
-         [4209, 4212], [4226, 4237], [4250, 4255], [4294, 4303], [4349, 4351], [4686, 4687],
-         [4702, 4703], [4750, 4751], [4790, 4791], [4806, 4807], [4886, 4887], [4955, 4968],
-         [4989, 4991], [5008, 5023], [5109, 5120], [5741, 5742], [5787, 5791], [5867, 5869],
-         [5873, 5887], [5906, 5919], [5938, 5951], [5970, 5983], [6001, 6015], [6068, 6102],
-         [6104, 6107], [6109, 6111], [6122, 6127], [6138, 6159], [6170, 6175], [6264, 6271],
-         [6315, 6319], [6390, 6399], [6429, 6469], [6510, 6511], [6517, 6527], [6572, 6592],
-         [6600, 6607], [6619, 6655], [6679, 6687], [6741, 6783], [6794, 6799], [6810, 6822],
-         [6824, 6916], [6964, 6980], [6988, 6991], [7002, 7042], [7073, 7085], [7098, 7167],
-         [7204, 7231], [7242, 7244], [7294, 7400], [7410, 7423], [7616, 7679], [7958, 7959],
-         [7966, 7967], [8006, 8007], [8014, 8015], [8062, 8063], [8127, 8129], [8141, 8143],
-         [8148, 8149], [8156, 8159], [8173, 8177], [8189, 8303], [8306, 8307], [8314, 8318],
-         [8330, 8335], [8341, 8449], [8451, 8454], [8456, 8457], [8470, 8472], [8478, 8483],
-         [8506, 8507], [8512, 8516], [8522, 8525], [8586, 9311], [9372, 9449], [9472, 10101],
-         [10132, 11263], [11493, 11498], [11503, 11516], [11518, 11519], [11558, 11567],
-         [11622, 11630], [11632, 11647], [11671, 11679], [11743, 11822], [11824, 12292],
-         [12296, 12320], [12330, 12336], [12342, 12343], [12349, 12352], [12439, 12444],
-         [12544, 12548], [12590, 12592], [12687, 12689], [12694, 12703], [12728, 12783],
-         [12800, 12831], [12842, 12880], [12896, 12927], [12938, 12976], [12992, 13311],
-         [19894, 19967], [40908, 40959], [42125, 42191], [42238, 42239], [42509, 42511],
-         [42540, 42559], [42592, 42593], [42607, 42622], [42648, 42655], [42736, 42774],
-         [42784, 42785], [42889, 42890], [42893, 43002], [43043, 43055], [43062, 43071],
-         [43124, 43137], [43188, 43215], [43226, 43249], [43256, 43258], [43260, 43263],
-         [43302, 43311], [43335, 43359], [43389, 43395], [43443, 43470], [43482, 43519],
-         [43561, 43583], [43596, 43599], [43610, 43615], [43639, 43641], [43643, 43647],
-         [43698, 43700], [43703, 43704], [43710, 43711], [43715, 43738], [43742, 43967],
-         [44003, 44015], [44026, 44031], [55204, 55215], [55239, 55242], [55292, 55295],
-         [57344, 63743], [64046, 64047], [64110, 64111], [64218, 64255], [64263, 64274],
-         [64280, 64284], [64434, 64466], [64830, 64847], [64912, 64913], [64968, 65007],
-         [65020, 65135], [65277, 65295], [65306, 65312], [65339, 65344], [65371, 65381],
-         [65471, 65473], [65480, 65481], [65488, 65489], [65496, 65497]];
-    for (i = 0; i < ranges.length; i++) {
-        start = ranges[i][0];
-        end = ranges[i][1];
-        for (j = start; j <= end; j++) {
-            result[j] = true;
-        }
-    }
-    return result;
-})();
-
-function splitQuery(query) {
-    var result = [];
-    var start = -1;
-    for (var i = 0; i < query.length; i++) {
-        if (splitChars[query.charCodeAt(i)]) {
-            if (start !== -1) {
-                result.push(query.slice(start, i));
-                start = -1;
-            }
-        } else if (start === -1) {
-            start = i;
-        }
-    }
-    if (start !== -1) {
-        result.push(query.slice(start));
-    }
-    return result;
-}
-
-
diff --git a/_static/pygments.css b/_static/pygments.css
index 691aeb82d..0d49244ed 100644
--- a/_static/pygments.css
+++ b/_static/pygments.css
@@ -17,6 +17,7 @@ span.linenos.special { color: #000000; background-color: #ffffc0; padding-left:
 .highlight .cs { color: #408090; background-color: #fff0f0 } /* Comment.Special */
 .highlight .gd { color: #A00000 } /* Generic.Deleted */
 .highlight .ge { font-style: italic } /* Generic.Emph */
+.highlight .ges { font-weight: bold; font-style: italic } /* Generic.EmphStrong */
 .highlight .gr { color: #FF0000 } /* Generic.Error */
 .highlight .gh { color: #000080; font-weight: bold } /* Generic.Heading */
 .highlight .gi { color: #00A000 } /* Generic.Inserted */
diff --git a/_static/searchtools.js b/_static/searchtools.js
index 0a44e8582..92da3f8b2 100644
--- a/_static/searchtools.js
+++ b/_static/searchtools.js
@@ -4,22 +4,24 @@
  *
  * Sphinx JavaScript utilities for the full-text search.
  *
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
+"use strict";
 
-if (!Scorer) {
-  /**
-   * Simple result scoring code.
-   */
+/**
+ * Simple result scoring code.
+ */
+if (typeof Scorer === "undefined") {
   var Scorer = {
     // Implement the following function to further tweak the score for each result
-    // The function takes a result array [filename, title, anchor, descr, score]
+    // The function takes a result array [docname, title, anchor, descr, score, filename]
     // and returns the new score.
     /*
-    score: function(result) {
-      return result[4];
+    score: result => {
+      const [docname, title, anchor, descr, score, filename] = result
+      return score
     },
     */
 
@@ -28,9 +30,11 @@ if (!Scorer) {
     // or matches in the last dotted part of the object name
     objPartialMatch: 6,
     // Additive scores depending on the priority of the object
-    objPrio: {0:  15,   // used to be importantResults
-              1:  5,   // used to be objectResults
-              2: -5},  // used to be unimportantResults
+    objPrio: {
+      0: 15, // used to be importantResults
+      1: 5, // used to be objectResults
+      2: -5, // used to be unimportantResults
+    },
     //  Used when the priority is not in the mapping.
     objPrioDefault: 0,
 
@@ -39,452 +43,548 @@ if (!Scorer) {
     partialTitle: 7,
     // query found in terms
     term: 5,
-    partialTerm: 2
+    partialTerm: 2,
   };
 }
 
-if (!splitQuery) {
-  function splitQuery(query) {
-    return query.split(/\s+/);
+const _removeChildren = (element) => {
+  while (element && element.lastChild) element.removeChild(element.lastChild);
+};
+
+/**
+ * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping
+ */
+const _escapeRegExp = (string) =>
+  string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string
+
+const _displayItem = (item, searchTerms, highlightTerms) => {
+  const docBuilder = DOCUMENTATION_OPTIONS.BUILDER;
+  const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX;
+  const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX;
+  const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY;
+  const contentRoot = document.documentElement.dataset.content_root;
+
+  const [docName, title, anchor, descr, score, _filename] = item;
+
+  let listItem = document.createElement("li");
+  let requestUrl;
+  let linkUrl;
+  if (docBuilder === "dirhtml") {
+    // dirhtml builder
+    let dirname = docName + "/";
+    if (dirname.match(/\/index\/$/))
+      dirname = dirname.substring(0, dirname.length - 6);
+    else if (dirname === "index/") dirname = "";
+    requestUrl = contentRoot + dirname;
+    linkUrl = requestUrl;
+  } else {
+    // normal html builders
+    requestUrl = contentRoot + docName + docFileSuffix;
+    linkUrl = docName + docLinkSuffix;
+  }
+  let linkEl = listItem.appendChild(document.createElement("a"));
+  linkEl.href = linkUrl + anchor;
+  linkEl.dataset.score = score;
+  linkEl.innerHTML = title;
+  if (descr) {
+    listItem.appendChild(document.createElement("span")).innerHTML =
+      " (" + descr + ")";
+    // highlight search terms in the description
+    if (SPHINX_HIGHLIGHT_ENABLED)  // set in sphinx_highlight.js
+      highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted"));
   }
+  else if (showSearchSummary)
+    fetch(requestUrl)
+      .then((responseData) => responseData.text())
+      .then((data) => {
+        if (data)
+          listItem.appendChild(
+            Search.makeSearchSummary(data, searchTerms, anchor)
+          );
+        // highlight search terms in the summary
+        if (SPHINX_HIGHLIGHT_ENABLED)  // set in sphinx_highlight.js
+          highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted"));
+      });
+  Search.output.appendChild(listItem);
+};
+const _finishSearch = (resultCount) => {
+  Search.stopPulse();
+  Search.title.innerText = _("Search Results");
+  if (!resultCount)
+    Search.status.innerText = Documentation.gettext(
+      "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories."
+    );
+  else
+    Search.status.innerText = _(
+      "Search finished, found ${resultCount} page(s) matching the search query."
+    ).replace('${resultCount}', resultCount);
+};
+const _displayNextItem = (
+  results,
+  resultCount,
+  searchTerms,
+  highlightTerms,
+) => {
+  // results left, load the summary and display it
+  // this is intended to be dynamic (don't sub resultsCount)
+  if (results.length) {
+    _displayItem(results.pop(), searchTerms, highlightTerms);
+    setTimeout(
+      () => _displayNextItem(results, resultCount, searchTerms, highlightTerms),
+      5
+    );
+  }
+  // search finished, update title and status message
+  else _finishSearch(resultCount);
+};
+// Helper function used by query() to order search results.
+// Each input is an array of [docname, title, anchor, descr, score, filename].
+// Order the results by score (in opposite order of appearance, since the
+// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
+const _orderResultsByScoreThenName = (a, b) => {
+  const leftScore = a[4];
+  const rightScore = b[4];
+  if (leftScore === rightScore) {
+    // same score: sort alphabetically
+    const leftTitle = a[1].toLowerCase();
+    const rightTitle = b[1].toLowerCase();
+    if (leftTitle === rightTitle) return 0;
+    return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
+  }
+  return leftScore > rightScore ? 1 : -1;
+};
+
+/**
+ * Default splitQuery function. Can be overridden in ``sphinx.search`` with a
+ * custom function per language.
+ *
+ * The regular expression works by splitting the string on consecutive characters
+ * that are not Unicode letters, numbers, underscores, or emoji characters.
+ * This is the same as ``\W+`` in Python, preserving the surrogate pair area.
+ */
+if (typeof splitQuery === "undefined") {
+  var splitQuery = (query) => query
+      .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu)
+      .filter(term => term)  // remove remaining empty strings
 }
 
 /**
  * Search Module
  */
-var Search = {
-
-  _index : null,
-  _queued_query : null,
-  _pulse_status : -1,
-
-  htmlToText : function(htmlString) {
-      var virtualDocument = document.implementation.createHTMLDocument('virtual');
-      var htmlElement = $(htmlString, virtualDocument);
-      htmlElement.find('.headerlink').remove();
-      docContent = htmlElement.find('[role=main]')[0];
-      if(docContent === undefined) {
-          console.warn("Content block not found. Sphinx search tries to obtain it " +
-                       "via '[role=main]'. Could you check your theme or template.");
-          return "";
-      }
-      return docContent.textContent || docContent.innerText;
-  },
+const Search = {
+  _index: null,
+  _queued_query: null,
+  _pulse_status: -1,
+
+  htmlToText: (htmlString, anchor) => {
+    const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html');
+    for (const removalQuery of [".headerlinks", "script", "style"]) {
+      htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() });
+    }
+    if (anchor) {
+      const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`);
+      if (anchorContent) return anchorContent.textContent;
 
-  init : function() {
-      var params = $.getQueryParameters();
-      if (params.q) {
-          var query = params.q[0];
-          $('input[name="q"]')[0].value = query;
-          this.performSearch(query);
-      }
+      console.warn(
+        `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.`
+      );
+    }
+
+    // if anchor not specified or not found, fall back to main content
+    const docContent = htmlElement.querySelector('[role="main"]');
+    if (docContent) return docContent.textContent;
+
+    console.warn(
+      "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template."
+    );
+    return "";
   },
 
-  loadIndex : function(url) {
-    $.ajax({type: "GET", url: url, data: null,
-            dataType: "script", cache: true,
-            complete: function(jqxhr, textstatus) {
-              if (textstatus != "success") {
-                document.getElementById("searchindexloader").src = url;
-              }
-            }});
+  init: () => {
+    const query = new URLSearchParams(window.location.search).get("q");
+    document
+      .querySelectorAll('input[name="q"]')
+      .forEach((el) => (el.value = query));
+    if (query) Search.performSearch(query);
   },
 
-  setIndex : function(index) {
-    var q;
-    this._index = index;
-    if ((q = this._queued_query) !== null) {
-      this._queued_query = null;
-      Search.query(q);
+  loadIndex: (url) =>
+    (document.body.appendChild(document.createElement("script")).src = url),
+
+  setIndex: (index) => {
+    Search._index = index;
+    if (Search._queued_query !== null) {
+      const query = Search._queued_query;
+      Search._queued_query = null;
+      Search.query(query);
     }
   },
 
-  hasIndex : function() {
-      return this._index !== null;
-  },
+  hasIndex: () => Search._index !== null,
 
-  deferQuery : function(query) {
-      this._queued_query = query;
-  },
+  deferQuery: (query) => (Search._queued_query = query),
 
-  stopPulse : function() {
-      this._pulse_status = 0;
-  },
+  stopPulse: () => (Search._pulse_status = -1),
 
-  startPulse : function() {
-    if (this._pulse_status >= 0)
-        return;
-    function pulse() {
-      var i;
+  startPulse: () => {
+    if (Search._pulse_status >= 0) return;
+
+    const pulse = () => {
       Search._pulse_status = (Search._pulse_status + 1) % 4;
-      var dotString = '';
-      for (i = 0; i < Search._pulse_status; i++)
-        dotString += '.';
-      Search.dots.text(dotString);
-      if (Search._pulse_status > -1)
-        window.setTimeout(pulse, 500);
-    }
+      Search.dots.innerText = ".".repeat(Search._pulse_status);
+      if (Search._pulse_status >= 0) window.setTimeout(pulse, 500);
+    };
     pulse();
   },
 
   /**
    * perform a search for something (or wait until index is loaded)
    */
-  performSearch : function(query) {
+  performSearch: (query) => {
     // create the required interface elements
-    this.out = $('#search-results');
-    this.title = $('<h2>' + _('Searching') + '</h2>').appendTo(this.out);
-    this.dots = $('<span></span>').appendTo(this.title);
-    this.status = $('<p class="search-summary">&nbsp;</p>').appendTo(this.out);
-    this.output = $('<ul class="search"/>').appendTo(this.out);
-
-    $('#search-progress').text(_('Preparing search...'));
-    this.startPulse();
+    const searchText = document.createElement("h2");
+    searchText.textContent = _("Searching");
+    const searchSummary = document.createElement("p");
+    searchSummary.classList.add("search-summary");
+    searchSummary.innerText = "";
+    const searchList = document.createElement("ul");
+    searchList.classList.add("search");
+
+    const out = document.getElementById("search-results");
+    Search.title = out.appendChild(searchText);
+    Search.dots = Search.title.appendChild(document.createElement("span"));
+    Search.status = out.appendChild(searchSummary);
+    Search.output = out.appendChild(searchList);
+
+    const searchProgress = document.getElementById("search-progress");
+    // Some themes don't use the search progress node
+    if (searchProgress) {
+      searchProgress.innerText = _("Preparing search...");
+    }
+    Search.startPulse();
 
     // index already loaded, the browser was quick!
-    if (this.hasIndex())
-      this.query(query);
-    else
-      this.deferQuery(query);
+    if (Search.hasIndex()) Search.query(query);
+    else Search.deferQuery(query);
   },
 
-  /**
-   * execute search (requires search index to be loaded)
-   */
-  query : function(query) {
-    var i;
-
-    // stem the searchterms and add them to the correct list
-    var stemmer = new Stemmer();
-    var searchterms = [];
-    var excluded = [];
-    var hlterms = [];
-    var tmp = splitQuery(query);
-    var objectterms = [];
-    for (i = 0; i < tmp.length; i++) {
-      if (tmp[i] !== "") {
-          objectterms.push(tmp[i].toLowerCase());
-      }
+  _parseQuery: (query) => {
+    // stem the search terms and add them to the correct list
+    const stemmer = new Stemmer();
+    const searchTerms = new Set();
+    const excludedTerms = new Set();
+    const highlightTerms = new Set();
+    const objectTerms = new Set(splitQuery(query.toLowerCase().trim()));
+    splitQuery(query.trim()).forEach((queryTerm) => {
+      const queryTermLower = queryTerm.toLowerCase();
+
+      // maybe skip this "word"
+      // stopwords array is from language_data.js
+      if (
+        stopwords.indexOf(queryTermLower) !== -1 ||
+        queryTerm.match(/^\d+$/)
+      )
+        return;
 
-      if ($u.indexOf(stopwords, tmp[i].toLowerCase()) != -1 || tmp[i] === "") {
-        // skip this "word"
-        continue;
-      }
       // stem the word
-      var word = stemmer.stemWord(tmp[i].toLowerCase());
-      var toAppend;
+      let word = stemmer.stemWord(queryTermLower);
       // select the correct list
-      if (word[0] == '-') {
-        toAppend = excluded;
-        word = word.substr(1);
-      }
+      if (word[0] === "-") excludedTerms.add(word.substr(1));
       else {
-        toAppend = searchterms;
-        hlterms.push(tmp[i].toLowerCase());
+        searchTerms.add(word);
+        highlightTerms.add(queryTermLower);
       }
-      // only add if not already in the list
-      if (!$u.contains(toAppend, word))
-        toAppend.push(word);
+    });
+
+    if (SPHINX_HIGHLIGHT_ENABLED) {  // set in sphinx_highlight.js
+      localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" "))
     }
-    var highlightstring = '?highlight=' + $.urlencode(hlterms.join(" "));
 
-    // console.debug('SEARCH: searching for:');
-    // console.info('required: ', searchterms);
-    // console.info('excluded: ', excluded);
+    // console.debug("SEARCH: searching for:");
+    // console.info("required: ", [...searchTerms]);
+    // console.info("excluded: ", [...excludedTerms]);
 
-    // prepare search
-    var terms = this._index.terms;
-    var titleterms = this._index.titleterms;
+    return [query, searchTerms, excludedTerms, highlightTerms, objectTerms];
+  },
 
-    // array of [filename, title, anchor, descr, score]
-    var results = [];
-    $('#search-progress').empty();
+  /**
+   * execute search (requires search index to be loaded)
+   */
+  _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => {
+    const filenames = Search._index.filenames;
+    const docNames = Search._index.docnames;
+    const titles = Search._index.titles;
+    const allTitles = Search._index.alltitles;
+    const indexEntries = Search._index.indexentries;
+
+    // Collect multiple result groups to be sorted separately and then ordered.
+    // Each is an array of [docname, title, anchor, descr, score, filename].
+    const normalResults = [];
+    const nonMainIndexResults = [];
+
+    _removeChildren(document.getElementById("search-progress"));
+
+    const queryLower = query.toLowerCase().trim();
+    for (const [title, foundTitles] of Object.entries(allTitles)) {
+      if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) {
+        for (const [file, id] of foundTitles) {
+          let score = Math.round(100 * queryLower.length / title.length)
+          normalResults.push([
+            docNames[file],
+            titles[file] !== title ? `${titles[file]} > ${title}` : title,
+            id !== null ? "#" + id : "",
+            null,
+            score,
+            filenames[file],
+          ]);
+        }
+      }
+    }
 
-    // lookup as object
-    for (i = 0; i < objectterms.length; i++) {
-      var others = [].concat(objectterms.slice(0, i),
-                             objectterms.slice(i+1, objectterms.length));
-      results = results.concat(this.performObjectSearch(objectterms[i], others));
+    // search for explicit entries in index directives
+    for (const [entry, foundEntries] of Object.entries(indexEntries)) {
+      if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) {
+        for (const [file, id, isMain] of foundEntries) {
+          const score = Math.round(100 * queryLower.length / entry.length);
+          const result = [
+            docNames[file],
+            titles[file],
+            id ? "#" + id : "",
+            null,
+            score,
+            filenames[file],
+          ];
+          if (isMain) {
+            normalResults.push(result);
+          } else {
+            nonMainIndexResults.push(result);
+          }
+        }
+      }
     }
 
+    // lookup as object
+    objectTerms.forEach((term) =>
+      normalResults.push(...Search.performObjectSearch(term, objectTerms))
+    );
+
     // lookup as search terms in fulltext
-    results = results.concat(this.performTermsSearch(searchterms, excluded, terms, titleterms));
+    normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms));
 
     // let the scorer override scores with a custom scoring function
     if (Scorer.score) {
-      for (i = 0; i < results.length; i++)
-        results[i][4] = Scorer.score(results[i]);
+      normalResults.forEach((item) => (item[4] = Scorer.score(item)));
+      nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item)));
     }
 
-    // now sort the results by score (in opposite order of appearance, since the
-    // display function below uses pop() to retrieve items) and then
-    // alphabetically
-    results.sort(function(a, b) {
-      var left = a[4];
-      var right = b[4];
-      if (left > right) {
-        return 1;
-      } else if (left < right) {
-        return -1;
-      } else {
-        // same score: sort alphabetically
-        left = a[1].toLowerCase();
-        right = b[1].toLowerCase();
-        return (left > right) ? -1 : ((left < right) ? 1 : 0);
+    // Sort each group of results by score and then alphabetically by name.
+    normalResults.sort(_orderResultsByScoreThenName);
+    nonMainIndexResults.sort(_orderResultsByScoreThenName);
+
+    // Combine the result groups in (reverse) order.
+    // Non-main index entries are typically arbitrary cross-references,
+    // so display them after other results.
+    let results = [...nonMainIndexResults, ...normalResults];
+
+    // remove duplicate search results
+    // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept
+    let seen = new Set();
+    results = results.reverse().reduce((acc, result) => {
+      let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(',');
+      if (!seen.has(resultStr)) {
+        acc.push(result);
+        seen.add(resultStr);
       }
-    });
+      return acc;
+    }, []);
+
+    return results.reverse();
+  },
+
+  query: (query) => {
+    const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query);
+    const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms);
 
     // for debugging
     //Search.lastresults = results.slice();  // a copy
-    //console.info('search results:', Search.lastresults);
+    // console.info("search results:", Search.lastresults);
 
     // print the results
-    var resultCount = results.length;
-    function displayNextItem() {
-      // results left, load the summary and display it
-      if (results.length) {
-        var item = results.pop();
-        var listItem = $('<li></li>');
-        var requestUrl = "";
-        var linkUrl = "";
-        if (DOCUMENTATION_OPTIONS.BUILDER === 'dirhtml') {
-          // dirhtml builder
-          var dirname = item[0] + '/';
-          if (dirname.match(/\/index\/$/)) {
-            dirname = dirname.substring(0, dirname.length-6);
-          } else if (dirname == 'index/') {
-            dirname = '';
-          }
-          requestUrl = DOCUMENTATION_OPTIONS.URL_ROOT + dirname;
-          linkUrl = requestUrl;
-
-        } else {
-          // normal html builders
-          requestUrl = DOCUMENTATION_OPTIONS.URL_ROOT + item[0] + DOCUMENTATION_OPTIONS.FILE_SUFFIX;
-          linkUrl = item[0] + DOCUMENTATION_OPTIONS.LINK_SUFFIX;
-        }
-        listItem.append($('<a/>').attr('href',
-            linkUrl +
-            highlightstring + item[2]).html(item[1]));
-        if (item[3]) {
-          listItem.append($('<span> (' + item[3] + ')</span>'));
-          Search.output.append(listItem);
-          setTimeout(function() {
-            displayNextItem();
-          }, 5);
-        } else if (DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY) {
-          $.ajax({url: requestUrl,
-                  dataType: "text",
-                  complete: function(jqxhr, textstatus) {
-                    var data = jqxhr.responseText;
-                    if (data !== '' && data !== undefined) {
-                      var summary = Search.makeSearchSummary(data, searchterms, hlterms);
-                      if (summary) {
-                        listItem.append(summary);
-                      }
-                    }
-                    Search.output.append(listItem);
-                    setTimeout(function() {
-                      displayNextItem();
-                    }, 5);
-                  }});
-        } else {
-          // just display title
-          Search.output.append(listItem);
-          setTimeout(function() {
-            displayNextItem();
-          }, 5);
-        }
-      }
-      // search finished, update title and status message
-      else {
-        Search.stopPulse();
-        Search.title.text(_('Search Results'));
-        if (!resultCount)
-          Search.status.text(_('Your search did not match any documents. Please make sure that all words are spelled correctly and that you\'ve selected enough categories.'));
-        else
-            Search.status.text(_('Search finished, found %s page(s) matching the search query.').replace('%s', resultCount));
-        Search.status.fadeIn(500);
-      }
-    }
-    displayNextItem();
+    _displayNextItem(results, results.length, searchTerms, highlightTerms);
   },
 
   /**
    * search for object names
    */
-  performObjectSearch : function(object, otherterms) {
-    var filenames = this._index.filenames;
-    var docnames = this._index.docnames;
-    var objects = this._index.objects;
-    var objnames = this._index.objnames;
-    var titles = this._index.titles;
-
-    var i;
-    var results = [];
-
-    for (var prefix in objects) {
-      for (var iMatch = 0; iMatch != objects[prefix].length; ++iMatch) {
-        var match = objects[prefix][iMatch];
-        var name = match[4];
-        var fullname = (prefix ? prefix + '.' : '') + name;
-        var fullnameLower = fullname.toLowerCase()
-        if (fullnameLower.indexOf(object) > -1) {
-          var score = 0;
-          var parts = fullnameLower.split('.');
-          // check for different match types: exact matches of full name or
-          // "last name" (i.e. last dotted part)
-          if (fullnameLower == object || parts[parts.length - 1] == object) {
-            score += Scorer.objNameMatch;
-          // matches in last name
-          } else if (parts[parts.length - 1].indexOf(object) > -1) {
-            score += Scorer.objPartialMatch;
-          }
-          var objname = objnames[match[1]][2];
-          var title = titles[match[0]];
-          // If more than one term searched for, we require other words to be
-          // found in the name/title/description
-          if (otherterms.length > 0) {
-            var haystack = (prefix + ' ' + name + ' ' +
-                            objname + ' ' + title).toLowerCase();
-            var allfound = true;
-            for (i = 0; i < otherterms.length; i++) {
-              if (haystack.indexOf(otherterms[i]) == -1) {
-                allfound = false;
-                break;
-              }
-            }
-            if (!allfound) {
-              continue;
-            }
-          }
-          var descr = objname + _(', in ') + title;
-
-          var anchor = match[3];
-          if (anchor === '')
-            anchor = fullname;
-          else if (anchor == '-')
-            anchor = objnames[match[1]][1] + '-' + fullname;
-          // add custom score for some objects according to scorer
-          if (Scorer.objPrio.hasOwnProperty(match[2])) {
-            score += Scorer.objPrio[match[2]];
-          } else {
-            score += Scorer.objPrioDefault;
-          }
-          results.push([docnames[match[0]], fullname, '#'+anchor, descr, score, filenames[match[0]]]);
-        }
+  performObjectSearch: (object, objectTerms) => {
+    const filenames = Search._index.filenames;
+    const docNames = Search._index.docnames;
+    const objects = Search._index.objects;
+    const objNames = Search._index.objnames;
+    const titles = Search._index.titles;
+
+    const results = [];
+
+    const objectSearchCallback = (prefix, match) => {
+      const name = match[4]
+      const fullname = (prefix ? prefix + "." : "") + name;
+      const fullnameLower = fullname.toLowerCase();
+      if (fullnameLower.indexOf(object) < 0) return;
+
+      let score = 0;
+      const parts = fullnameLower.split(".");
+
+      // check for different match types: exact matches of full name or
+      // "last name" (i.e. last dotted part)
+      if (fullnameLower === object || parts.slice(-1)[0] === object)
+        score += Scorer.objNameMatch;
+      else if (parts.slice(-1)[0].indexOf(object) > -1)
+        score += Scorer.objPartialMatch; // matches in last name
+
+      const objName = objNames[match[1]][2];
+      const title = titles[match[0]];
+
+      // If more than one term searched for, we require other words to be
+      // found in the name/title/description
+      const otherTerms = new Set(objectTerms);
+      otherTerms.delete(object);
+      if (otherTerms.size > 0) {
+        const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase();
+        if (
+          [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0)
+        )
+          return;
       }
-    }
 
+      let anchor = match[3];
+      if (anchor === "") anchor = fullname;
+      else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname;
+
+      const descr = objName + _(", in ") + title;
+
+      // add custom score for some objects according to scorer
+      if (Scorer.objPrio.hasOwnProperty(match[2]))
+        score += Scorer.objPrio[match[2]];
+      else score += Scorer.objPrioDefault;
+
+      results.push([
+        docNames[match[0]],
+        fullname,
+        "#" + anchor,
+        descr,
+        score,
+        filenames[match[0]],
+      ]);
+    };
+    Object.keys(objects).forEach((prefix) =>
+      objects[prefix].forEach((array) =>
+        objectSearchCallback(prefix, array)
+      )
+    );
     return results;
   },
 
-  /**
-   * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions
-   */
-  escapeRegExp : function(string) {
-    return string.replace(/[.*+\-?^${}()|[\]\\]/g, '\\$&'); // $& means the whole matched string
-  },
-
   /**
    * search for full-text terms in the index
    */
-  performTermsSearch : function(searchterms, excluded, terms, titleterms) {
-    var docnames = this._index.docnames;
-    var filenames = this._index.filenames;
-    var titles = this._index.titles;
+  performTermsSearch: (searchTerms, excludedTerms) => {
+    // prepare search
+    const terms = Search._index.terms;
+    const titleTerms = Search._index.titleterms;
+    const filenames = Search._index.filenames;
+    const docNames = Search._index.docnames;
+    const titles = Search._index.titles;
 
-    var i, j, file;
-    var fileMap = {};
-    var scoreMap = {};
-    var results = [];
+    const scoreMap = new Map();
+    const fileMap = new Map();
 
     // perform the search on the required terms
-    for (i = 0; i < searchterms.length; i++) {
-      var word = searchterms[i];
-      var files = [];
-      var _o = [
-        {files: terms[word], score: Scorer.term},
-        {files: titleterms[word], score: Scorer.title}
+    searchTerms.forEach((word) => {
+      const files = [];
+      const arr = [
+        { files: terms[word], score: Scorer.term },
+        { files: titleTerms[word], score: Scorer.title },
       ];
       // add support for partial matches
       if (word.length > 2) {
-        var word_regex = this.escapeRegExp(word);
-        for (var w in terms) {
-          if (w.match(word_regex) && !terms[word]) {
-            _o.push({files: terms[w], score: Scorer.partialTerm})
-          }
+        const escapedWord = _escapeRegExp(word);
+        if (!terms.hasOwnProperty(word)) {
+          Object.keys(terms).forEach((term) => {
+            if (term.match(escapedWord))
+              arr.push({ files: terms[term], score: Scorer.partialTerm });
+          });
         }
-        for (var w in titleterms) {
-          if (w.match(word_regex) && !titleterms[word]) {
-              _o.push({files: titleterms[w], score: Scorer.partialTitle})
-          }
+        if (!titleTerms.hasOwnProperty(word)) {
+          Object.keys(titleTerms).forEach((term) => {
+            if (term.match(escapedWord))
+              arr.push({ files: titleTerms[term], score: Scorer.partialTitle });
+          });
         }
       }
 
       // no match but word was a required one
-      if ($u.every(_o, function(o){return o.files === undefined;})) {
-        break;
-      }
+      if (arr.every((record) => record.files === undefined)) return;
+
       // found search word in contents
-      $u.each(_o, function(o) {
-        var _files = o.files;
-        if (_files === undefined)
-          return
-
-        if (_files.length === undefined)
-          _files = [_files];
-        files = files.concat(_files);
-
-        // set score for the word in each file to Scorer.term
-        for (j = 0; j < _files.length; j++) {
-          file = _files[j];
-          if (!(file in scoreMap))
-            scoreMap[file] = {};
-          scoreMap[file][word] = o.score;
-        }
+      arr.forEach((record) => {
+        if (record.files === undefined) return;
+
+        let recordFiles = record.files;
+        if (recordFiles.length === undefined) recordFiles = [recordFiles];
+        files.push(...recordFiles);
+
+        // set score for the word in each file
+        recordFiles.forEach((file) => {
+          if (!scoreMap.has(file)) scoreMap.set(file, {});
+          scoreMap.get(file)[word] = record.score;
+        });
       });
 
       // create the mapping
-      for (j = 0; j < files.length; j++) {
-        file = files[j];
-        if (file in fileMap && fileMap[file].indexOf(word) === -1)
-          fileMap[file].push(word);
-        else
-          fileMap[file] = [word];
-      }
-    }
+      files.forEach((file) => {
+        if (!fileMap.has(file)) fileMap.set(file, [word]);
+        else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word);
+      });
+    });
 
     // now check if the files don't contain excluded terms
-    for (file in fileMap) {
-      var valid = true;
-
+    const results = [];
+    for (const [file, wordList] of fileMap) {
       // check if all requirements are matched
-      var filteredTermCount = // as search terms with length < 3 are discarded: ignore
-        searchterms.filter(function(term){return term.length > 2}).length
+
+      // as search terms with length < 3 are discarded
+      const filteredTermCount = [...searchTerms].filter(
+        (term) => term.length > 2
+      ).length;
       if (
-        fileMap[file].length != searchterms.length &&
-        fileMap[file].length != filteredTermCount
-      ) continue;
+        wordList.length !== searchTerms.size &&
+        wordList.length !== filteredTermCount
+      )
+        continue;
 
       // ensure that none of the excluded terms is in the search result
-      for (i = 0; i < excluded.length; i++) {
-        if (terms[excluded[i]] == file ||
-            titleterms[excluded[i]] == file ||
-            $u.contains(terms[excluded[i]] || [], file) ||
-            $u.contains(titleterms[excluded[i]] || [], file)) {
-          valid = false;
-          break;
-        }
-      }
+      if (
+        [...excludedTerms].some(
+          (term) =>
+            terms[term] === file ||
+            titleTerms[term] === file ||
+            (terms[term] || []).includes(file) ||
+            (titleTerms[term] || []).includes(file)
+        )
+      )
+        break;
 
-      // if we have still a valid result we can add it to the result list
-      if (valid) {
-        // select one (max) score for the file.
-        // for better ranking, we should calculate ranking by using words statistics like basic tf-idf...
-        var score = $u.max($u.map(fileMap[file], function(w){return scoreMap[file][w]}));
-        results.push([docnames[file], titles[file], '', null, score, filenames[file]]);
-      }
+      // select one (max) score for the file.
+      const score = Math.max(...wordList.map((w) => scoreMap.get(file)[w]));
+      // add result to the result list
+      results.push([
+        docNames[file],
+        titles[file],
+        "",
+        null,
+        score,
+        filenames[file],
+      ]);
     }
     return results;
   },
@@ -492,34 +592,28 @@ var Search = {
   /**
    * helper function to return a node containing the
    * search summary for a given text. keywords is a list
-   * of stemmed words, hlwords is the list of normal, unstemmed
-   * words. the first one is used to find the occurrence, the
-   * latter for highlighting it.
+   * of stemmed words.
    */
-  makeSearchSummary : function(htmlText, keywords, hlwords) {
-    var text = Search.htmlToText(htmlText);
-    if (text == "") {
-      return null;
-    }
-    var textLower = text.toLowerCase();
-    var start = 0;
-    $.each(keywords, function() {
-      var i = textLower.indexOf(this.toLowerCase());
-      if (i > -1)
-        start = i;
-    });
-    start = Math.max(start - 120, 0);
-    var excerpt = ((start > 0) ? '...' : '') +
-      $.trim(text.substr(start, 240)) +
-      ((start + 240 - text.length) ? '...' : '');
-    var rv = $('<p class="context"></p>').text(excerpt);
-    $.each(hlwords, function() {
-      rv = rv.highlightText(this, 'highlighted');
-    });
-    return rv;
-  }
+  makeSearchSummary: (htmlText, keywords, anchor) => {
+    const text = Search.htmlToText(htmlText, anchor);
+    if (text === "") return null;
+
+    const textLower = text.toLowerCase();
+    const actualStartPosition = [...keywords]
+      .map((k) => textLower.indexOf(k.toLowerCase()))
+      .filter((i) => i > -1)
+      .slice(-1)[0];
+    const startWithContext = Math.max(actualStartPosition - 120, 0);
+
+    const top = startWithContext === 0 ? "" : "...";
+    const tail = startWithContext + 240 < text.length ? "..." : "";
+
+    let summary = document.createElement("p");
+    summary.classList.add("context");
+    summary.textContent = top + text.substr(startWithContext, 240).trim() + tail;
+
+    return summary;
+  },
 };
 
-$(document).ready(function() {
-  Search.init();
-});
+_ready(Search.init);
diff --git a/_static/sg_gallery-binder.css b/_static/sg_gallery-binder.css
index a33aa4204..420005d22 100644
--- a/_static/sg_gallery-binder.css
+++ b/_static/sg_gallery-binder.css
@@ -4,3 +4,8 @@ div.binder-badge {
   margin: 1em auto;
   vertical-align: middle;
 }
+
+div.lite-badge {
+  margin: 1em auto;
+  vertical-align: middle;
+}
diff --git a/_static/sg_gallery-dataframe.css b/_static/sg_gallery-dataframe.css
index f01e6b328..fac74c43b 100644
--- a/_static/sg_gallery-dataframe.css
+++ b/_static/sg_gallery-dataframe.css
@@ -1,17 +1,28 @@
 /* Pandas dataframe css */
 /* Taken from: https://github.com/spatialaudio/nbsphinx/blob/fb3ba670fc1ba5f54d4c487573dbc1b4ecf7e9ff/src/nbsphinx.py#L587-L619 */
+html[data-theme="light"] {
+  --sg-text-color: #000;
+  --sg-tr-odd-color: #f5f5f5;
+  --sg-tr-hover-color: rgba(66, 165, 245, 0.2);
+}
+html[data-theme="dark"] {
+  --sg-text-color: #fff;
+  --sg-tr-odd-color: #373737;
+  --sg-tr-hover-color: rgba(30, 81, 122, 0.2);
+}
 
 table.dataframe {
   border: none !important;
   border-collapse: collapse;
   border-spacing: 0;
   border-color: transparent;
-  color: black;
+  color: var(--sg-text-color);
   font-size: 12px;
   table-layout: fixed;
+  width: auto;
 }
 table.dataframe thead {
-  border-bottom: 1px solid black;
+  border-bottom: 1px solid var(--sg-text-color);
   vertical-align: bottom;
 }
 table.dataframe tr,
@@ -29,8 +40,8 @@ table.dataframe th {
   font-weight: bold;
 }
 table.dataframe tbody tr:nth-child(odd) {
-  background: #f5f5f5;
+  background: var(--sg-tr-odd-color);
 }
 table.dataframe tbody tr:hover {
-  background: rgba(66, 165, 245, 0.2);
+  background: var(--sg-tr-hover-color);
 }
diff --git a/_static/sg_gallery-rendered-html.css b/_static/sg_gallery-rendered-html.css
index cea21975c..93dc2ffb0 100644
--- a/_static/sg_gallery-rendered-html.css
+++ b/_static/sg_gallery-rendered-html.css
@@ -1,7 +1,21 @@
 /* Adapted from notebook/static/style/style.min.css */
+html[data-theme="light"] {
+  --sg-text-color: #000;
+  --sg-background-color: #ffffff;
+  --sg-code-background-color: #eff0f1;
+  --sg-tr-hover-color: rgba(66, 165, 245, 0.2);
+  --sg-tr-odd-color: #f5f5f5;
+}
+html[data-theme="dark"] {
+  --sg-text-color: #fff;
+  --sg-background-color: #121212;
+  --sg-code-background-color: #2f2f30;
+  --sg-tr-hover-color: rgba(66, 165, 245, 0.2);
+  --sg-tr-odd-color: #1f1f1f;
+}
 
 .rendered_html {
-  color: #000;
+  color: var(--sg-text-color);
   /* any extras will just be numbers: */
 }
 .rendered_html em {
@@ -112,27 +126,27 @@
   margin-top: 1em;
 }
 .rendered_html hr {
-  color: black;
-  background-color: black;
+  color: var(--sg-text-color);
+  background-color: var(--sg-text-color);
 }
 .rendered_html pre {
   margin: 1em 2em;
   padding: 0px;
-  background-color: #fff;
+  background-color: var(--sg-background-color);
 }
 .rendered_html code {
-  background-color: #eff0f1;
+  background-color: var(--sg-code-background-color);
 }
 .rendered_html p code {
   padding: 1px 5px;
 }
 .rendered_html pre code {
-  background-color: #fff;
+  background-color: var(--sg-background-color);
 }
 .rendered_html pre,
 .rendered_html code {
   border: 0;
-  color: #000;
+  color: var(--sg-text-color);
   font-size: 100%;
 }
 .rendered_html blockquote {
@@ -144,12 +158,12 @@
   border: none;
   border-collapse: collapse;
   border-spacing: 0;
-  color: black;
+  color: var(--sg-text-color);
   font-size: 12px;
   table-layout: fixed;
 }
 .rendered_html thead {
-  border-bottom: 1px solid black;
+  border-bottom: 1px solid var(--sg-text-color);
   vertical-align: bottom;
 }
 .rendered_html tr,
@@ -167,10 +181,11 @@
   font-weight: bold;
 }
 .rendered_html tbody tr:nth-child(odd) {
-  background: #f5f5f5;
+  background: var(--sg-tr-odd-color);
 }
 .rendered_html tbody tr:hover {
-  background: rgba(66, 165, 245, 0.2);
+  color: var(--sg-text-color);
+  background: var(--sg-tr-hover-color);
 }
 .rendered_html * + table {
   margin-top: 1em;
diff --git a/_static/sg_gallery.css b/_static/sg_gallery.css
index 5fdf7f249..72227837d 100644
--- a/_static/sg_gallery.css
+++ b/_static/sg_gallery.css
@@ -3,27 +3,158 @@ Sphinx-Gallery has compatible CSS to fix default sphinx themes
 Tested for Sphinx 1.3.1 for all themes: default, alabaster, sphinxdoc,
 scrolls, agogo, traditional, nature, haiku, pyramid
 Tested for Read the Docs theme 0.1.7 */
+
+/* Define light colors */
+:root, html[data-theme="light"], body[data-theme="light"]{
+  --sg-tooltip-foreground: black;
+  --sg-tooltip-background: rgba(250, 250, 250, 0.9);
+  --sg-tooltip-border: #ccc transparent;
+  --sg-thumb-box-shadow-color: #6c757d40;
+  --sg-thumb-hover-border: #0069d9;
+  --sg-script-out: #888;
+  --sg-script-pre: #fafae2;
+  --sg-pytb-foreground: #000;
+  --sg-pytb-background: #ffe4e4;
+  --sg-pytb-border-color: #f66;
+  --sg-download-a-background-color: #ffc;
+  --sg-download-a-background-image: linear-gradient(to bottom, #ffc, #d5d57e);
+  --sg-download-a-border-color: 1px solid #c2c22d;
+  --sg-download-a-color: #000;
+  --sg-download-a-hover-background-color: #d5d57e;
+  --sg-download-a-hover-box-shadow-1: rgba(255, 255, 255, 0.1);
+  --sg-download-a-hover-box-shadow-2: rgba(0, 0, 0, 0.25);
+}
+@media(prefers-color-scheme: light) {
+  :root[data-theme="auto"], html[data-theme="auto"], body[data-theme="auto"] {
+    --sg-tooltip-foreground: black;
+    --sg-tooltip-background: rgba(250, 250, 250, 0.9);
+    --sg-tooltip-border: #ccc transparent;
+    --sg-thumb-box-shadow-color: #6c757d40;
+    --sg-thumb-hover-border: #0069d9;
+    --sg-script-out: #888;
+    --sg-script-pre: #fafae2;
+    --sg-pytb-foreground: #000;
+    --sg-pytb-background: #ffe4e4;
+    --sg-pytb-border-color: #f66;
+    --sg-download-a-background-color: #ffc;
+    --sg-download-a-background-image: linear-gradient(to bottom, #ffc, #d5d57e);
+    --sg-download-a-border-color: 1px solid #c2c22d;
+    --sg-download-a-color: #000;
+    --sg-download-a-hover-background-color: #d5d57e;
+    --sg-download-a-hover-box-shadow-1: rgba(255, 255, 255, 0.1);
+    --sg-download-a-hover-box-shadow-2: rgba(0, 0, 0, 0.25);
+  }
+}
+
+html[data-theme="dark"], body[data-theme="dark"] {
+  --sg-tooltip-foreground: white;
+  --sg-tooltip-background: rgba(10, 10, 10, 0.9);
+  --sg-tooltip-border: #333 transparent;
+  --sg-thumb-box-shadow-color: #79848d40;
+  --sg-thumb-hover-border: #003975;
+  --sg-script-out: rgb(179, 179, 179);
+  --sg-script-pre: #2e2e22;
+  --sg-pytb-foreground: #fff;
+  --sg-pytb-background: #1b1717;
+  --sg-pytb-border-color: #622;
+  --sg-download-a-background-color: #443;
+  --sg-download-a-background-image: linear-gradient(to bottom, #443, #221);
+  --sg-download-a-border-color: 1px solid #3a3a0d;
+  --sg-download-a-color: #fff;
+  --sg-download-a-hover-background-color: #616135;
+  --sg-download-a-hover-box-shadow-1: rgba(0, 0, 0, 0.1);
+  --sg-download-a-hover-box-shadow-2: rgba(255, 255, 255, 0.25);
+}
+@media(prefers-color-scheme: dark){
+  html[data-theme="auto"], body[data-theme="auto"] {
+    --sg-tooltip-foreground: white;
+    --sg-tooltip-background: rgba(10, 10, 10, 0.9);
+    --sg-tooltip-border: #333 transparent;
+    --sg-thumb-box-shadow-color: #79848d40;
+    --sg-thumb-hover-border: #003975;
+    --sg-script-out: rgb(179, 179, 179);
+    --sg-script-pre: #2e2e22;
+    --sg-pytb-foreground: #fff;
+    --sg-pytb-background: #1b1717;
+    --sg-pytb-border-color: #622;
+    --sg-download-a-background-color: #443;
+    --sg-download-a-background-image: linear-gradient(to bottom, #443, #221);
+    --sg-download-a-border-color: 1px solid #3a3a0d;
+    --sg-download-a-color: #fff;
+    --sg-download-a-hover-background-color: #616135;
+    --sg-download-a-hover-box-shadow-1: rgba(0, 0, 0, 0.1);
+    --sg-download-a-hover-box-shadow-2: rgba(255, 255, 255, 0.25);
+  }
+}
+
+.sphx-glr-thumbnails {
+  width: 100%;
+  margin: 0px 0px 20px 0px;
+
+  /* align thumbnails on a grid */
+  justify-content: space-between;
+  display: grid;
+  /* each grid column should be at least 160px (this will determine
+  the actual number of columns) and then take as much of the
+  remaining width as possible */
+  grid-template-columns: repeat(auto-fill, minmax(160px, 1fr));
+  gap: 15px;
+}
+.sphx-glr-thumbnails .toctree-wrapper {
+  /* hide empty toctree divs added to the DOM
+  by sphinx even though the toctree is hidden
+  (they would fill grid places with empty divs) */
+  display: none;
+}
 .sphx-glr-thumbcontainer {
-  background: #fff;
-  border: solid #fff 1px;
+  background: transparent;
   -moz-border-radius: 5px;
   -webkit-border-radius: 5px;
   border-radius: 5px;
-  box-shadow: none;
-  float: left;
-  margin: 5px;
-  min-height: 230px;
-  padding-top: 5px;
+  box-shadow: 0 0 10px var(--sg-thumb-box-shadow-color);
+
+  /* useful to absolutely position link in div */
   position: relative;
+
+  /* thumbnail width should include padding and borders
+  and take all available space */
+  box-sizing: border-box;
+  width: 100%;
+  padding: 10px;
+  border: 1px solid transparent;
+
+  /* align content in thumbnail */
+  display: flex;
+  flex-direction: column;
+  align-items: center;
+  gap: 7px;
+}
+.sphx-glr-thumbcontainer p {
+  position: absolute;
+  top: 0;
+  left: 0;
+}
+.sphx-glr-thumbcontainer p,
+.sphx-glr-thumbcontainer p a {
+  /* link should cover the whole thumbnail div */
+  width: 100%;
+  height: 100%;
+}
+.sphx-glr-thumbcontainer p a span {
+  /* text within link should be masked
+  (we are just interested in the href) */
+  display: none;
 }
 .sphx-glr-thumbcontainer:hover {
-  border: solid #b4ddfc 1px;
-  box-shadow: 0 0 15px rgba(142, 176, 202, 0.5);
+  border: 1px solid;
+  border-color: var(--sg-thumb-hover-border);
+  cursor: pointer;
 }
 .sphx-glr-thumbcontainer a.internal {
   bottom: 0;
   display: block;
   left: 0;
+  box-sizing: border-box;
   padding: 150px 10px 0;
   position: absolute;
   right: 0;
@@ -36,7 +167,7 @@ thumbnail with its default link Background color */
 }
 
 .sphx-glr-thumbcontainer p {
-  margin: 0 0 .1em 0;
+  margin: 0 0 0.1em 0;
 }
 .sphx-glr-thumbcontainer .figure {
   margin: 10px;
@@ -48,49 +179,56 @@ thumbnail with its default link Background color */
   max-width: 160px;
 }
 .sphx-glr-thumbcontainer[tooltip]:hover:after {
-  background: rgba(0, 0, 0, 0.8);
-  -webkit-border-radius: 5px;
-  -moz-border-radius: 5px;
-  border-radius: 5px;
-  color: #fff;
+  background: var(--sg-tooltip-background);
+  -webkit-border-radius: 4px;
+  -moz-border-radius: 4px;
+  border-radius: 4px;
+  color: var(--sg-tooltip-foreground);
   content: attr(tooltip);
-  left: 95%;
-  padding: 5px 15px;
-  position: absolute;
+  padding: 10px;
   z-index: 98;
-  width: 220px;
-  bottom: 52%;
-}
-.sphx-glr-thumbcontainer[tooltip]:hover:before {
-  border: solid;
-  border-color: #333 transparent;
-  border-width: 18px 0 0 20px;
-  bottom: 58%;
-  content: '';
-  left: 85%;
+  width: 100%;
+  height: 100%;
   position: absolute;
-  z-index: 99;
+  pointer-events: none;
+  top: 0;
+  box-sizing: border-box;
+  overflow: hidden;
+  backdrop-filter: blur(3px);
 }
 
 .sphx-glr-script-out {
-  color: #888;
-  margin: 0;
-}
-p.sphx-glr-script-out {
-    padding-top: 0.7em;
+  color: var(--sg-script-out);
+  display: flex;
+  gap: 0.5em;
+}
+.sphx-glr-script-out::before {
+  content: "Out:";
+  /* These numbers come from the pre style in the pydata sphinx theme. This
+   * turns out to match perfectly on the rtd theme, but be a bit too low for
+   * the pydata sphinx theme. As I could not find a dimension to use that was
+   * scaled the same way, I just picked one option that worked pretty close for
+   * both. */
+  line-height: 1.4;
+  padding-top: 10px;
 }
 .sphx-glr-script-out .highlight {
   background-color: transparent;
-  margin-left: 2.5em;
-  margin-top: -2.1em;
+  /* These options make the div expand... */
+  flex-grow: 1;
+  /* ... but also keep it from overflowing its flex container. */
+  overflow: auto;
 }
 .sphx-glr-script-out .highlight pre {
-  background-color: #fafae2;
+  background-color: var(--sg-script-pre);
   border: 0;
   max-height: 30em;
   overflow: auto;
   padding-left: 1ex;
-  margin: 0px;
+  /* This margin is necessary in the pydata sphinx theme because pre has a box
+   * shadow which would be clipped by the overflow:auto in the parent div
+   * above. */
+  margin: 2px;
   word-break: break-word;
 }
 .sphx-glr-script-out + p {
@@ -100,15 +238,15 @@ blockquote.sphx-glr-script-out {
   margin-left: 0pt;
 }
 .sphx-glr-script-out.highlight-pytb .highlight pre {
-  color: #000;
-  background-color: #ffe4e4;
-  border: 1px solid #f66;
+  color: var(--sg-pytb-foreground);
+  background-color: var(--sg-pytb-background);
+  border: 1px solid var(--sg-pytb-border-color);
   margin-top: 10px;
   padding: 7px;
 }
 
 div.sphx-glr-footer {
-    text-align: center;
+  text-align: center;
 }
 
 div.sphx-glr-download {
@@ -117,11 +255,11 @@ div.sphx-glr-download {
 }
 
 div.sphx-glr-download a {
-  background-color: #ffc;
-  background-image: linear-gradient(to bottom, #FFC, #d5d57e);
+  background-color: var(--sg-download-a-background-color);
+  background-image: var(--sg-download-a-background-image);
   border-radius: 4px;
-  border: 1px solid #c2c22d;
-  color: #000;
+  border: 1px solid var(--sg-download-a-border-color);
+  color: var(--sg-download-a-color);
   display: inline-block;
   font-weight: bold;
   padding: 1ex;
@@ -139,10 +277,10 @@ div.sphx-glr-download code.download {
 }
 
 div.sphx-glr-download a:hover {
-  box-shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 5px rgba(0,0,0,.25);
+  box-shadow: inset 0 1px 0 var(--sg-download-a-hover-box-shadow-1), 0 1px 5px var(--sg-download-a-hover-box-shadow-2);
   text-decoration: none;
   background-image: none;
-  background-color: #d5d57e;
+  background-color: var(--sg-download-a-hover-background-color);
 }
 
 .sphx-glr-example-title:target::before {
@@ -180,7 +318,7 @@ div.sphx-glr-animation {
   display: block;
   max-width: 100%;
 }
-div.sphx-glr-animation .animation{
+div.sphx-glr-animation .animation {
   display: block;
 }
 
@@ -195,7 +333,7 @@ p.sphx-glr-signature a.reference.external {
   display: table;
 }
 
-.sphx-glr-clear{
+.sphx-glr-clear {
   clear: both;
 }
 
diff --git a/_static/sphinx_highlight.js b/_static/sphinx_highlight.js
new file mode 100644
index 000000000..8a96c69a1
--- /dev/null
+++ b/_static/sphinx_highlight.js
@@ -0,0 +1,154 @@
+/* Highlighting utilities for Sphinx HTML documentation. */
+"use strict";
+
+const SPHINX_HIGHLIGHT_ENABLED = true
+
+/**
+ * highlight a given string on a node by wrapping it in
+ * span elements with the given class name.
+ */
+const _highlight = (node, addItems, text, className) => {
+  if (node.nodeType === Node.TEXT_NODE) {
+    const val = node.nodeValue;
+    const parent = node.parentNode;
+    const pos = val.toLowerCase().indexOf(text);
+    if (
+      pos >= 0 &&
+      !parent.classList.contains(className) &&
+      !parent.classList.contains("nohighlight")
+    ) {
+      let span;
+
+      const closestNode = parent.closest("body, svg, foreignObject");
+      const isInSVG = closestNode && closestNode.matches("svg");
+      if (isInSVG) {
+        span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
+      } else {
+        span = document.createElement("span");
+        span.classList.add(className);
+      }
+
+      span.appendChild(document.createTextNode(val.substr(pos, text.length)));
+      const rest = document.createTextNode(val.substr(pos + text.length));
+      parent.insertBefore(
+        span,
+        parent.insertBefore(
+          rest,
+          node.nextSibling
+        )
+      );
+      node.nodeValue = val.substr(0, pos);
+      /* There may be more occurrences of search term in this node. So call this
+       * function recursively on the remaining fragment.
+       */
+      _highlight(rest, addItems, text, className);
+
+      if (isInSVG) {
+        const rect = document.createElementNS(
+          "http://www.w3.org/2000/svg",
+          "rect"
+        );
+        const bbox = parent.getBBox();
+        rect.x.baseVal.value = bbox.x;
+        rect.y.baseVal.value = bbox.y;
+        rect.width.baseVal.value = bbox.width;
+        rect.height.baseVal.value = bbox.height;
+        rect.setAttribute("class", className);
+        addItems.push({ parent: parent, target: rect });
+      }
+    }
+  } else if (node.matches && !node.matches("button, select, textarea")) {
+    node.childNodes.forEach((el) => _highlight(el, addItems, text, className));
+  }
+};
+const _highlightText = (thisNode, text, className) => {
+  let addItems = [];
+  _highlight(thisNode, addItems, text, className);
+  addItems.forEach((obj) =>
+    obj.parent.insertAdjacentElement("beforebegin", obj.target)
+  );
+};
+
+/**
+ * Small JavaScript module for the documentation.
+ */
+const SphinxHighlight = {
+
+  /**
+   * highlight the search words provided in localstorage in the text
+   */
+  highlightSearchWords: () => {
+    if (!SPHINX_HIGHLIGHT_ENABLED) return;  // bail if no highlight
+
+    // get and clear terms from localstorage
+    const url = new URL(window.location);
+    const highlight =
+        localStorage.getItem("sphinx_highlight_terms")
+        || url.searchParams.get("highlight")
+        || "";
+    localStorage.removeItem("sphinx_highlight_terms")
+    url.searchParams.delete("highlight");
+    window.history.replaceState({}, "", url);
+
+    // get individual terms from highlight string
+    const terms = highlight.toLowerCase().split(/\s+/).filter(x => x);
+    if (terms.length === 0) return; // nothing to do
+
+    // There should never be more than one element matching "div.body"
+    const divBody = document.querySelectorAll("div.body");
+    const body = divBody.length ? divBody[0] : document.querySelector("body");
+    window.setTimeout(() => {
+      terms.forEach((term) => _highlightText(body, term, "highlighted"));
+    }, 10);
+
+    const searchBox = document.getElementById("searchbox");
+    if (searchBox === null) return;
+    searchBox.appendChild(
+      document
+        .createRange()
+        .createContextualFragment(
+          '<p class="highlight-link">' +
+            '<a href="javascript:SphinxHighlight.hideSearchWords()">' +
+            _("Hide Search Matches") +
+            "</a></p>"
+        )
+    );
+  },
+
+  /**
+   * helper function to hide the search marks again
+   */
+  hideSearchWords: () => {
+    document
+      .querySelectorAll("#searchbox .highlight-link")
+      .forEach((el) => el.remove());
+    document
+      .querySelectorAll("span.highlighted")
+      .forEach((el) => el.classList.remove("highlighted"));
+    localStorage.removeItem("sphinx_highlight_terms")
+  },
+
+  initEscapeListener: () => {
+    // only install a listener if it is really needed
+    if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return;
+
+    document.addEventListener("keydown", (event) => {
+      // bail for input elements
+      if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return;
+      // bail with special keys
+      if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return;
+      if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) {
+        SphinxHighlight.hideSearchWords();
+        event.preventDefault();
+      }
+    });
+  },
+};
+
+_ready(() => {
+  /* Do not call highlightSearchWords() when we are on the search page.
+   * It will highlight words from the *previous* search query.
+   */
+  if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords();
+  SphinxHighlight.initEscapeListener();
+});
diff --git a/_static/underscore-1.13.1.js b/_static/underscore-1.13.1.js
deleted file mode 100644
index ffd77af96..000000000
--- a/_static/underscore-1.13.1.js
+++ /dev/null
@@ -1,2042 +0,0 @@
-(function (global, factory) {
-  typeof exports === 'object' && typeof module !== 'undefined' ? module.exports = factory() :
-  typeof define === 'function' && define.amd ? define('underscore', factory) :
-  (global = typeof globalThis !== 'undefined' ? globalThis : global || self, (function () {
-    var current = global._;
-    var exports = global._ = factory();
-    exports.noConflict = function () { global._ = current; return exports; };
-  }()));
-}(this, (function () {
-  //     Underscore.js 1.13.1
-  //     https://underscorejs.org
-  //     (c) 2009-2021 Jeremy Ashkenas, Julian Gonggrijp, and DocumentCloud and Investigative Reporters & Editors
-  //     Underscore may be freely distributed under the MIT license.
-
-  // Current version.
-  var VERSION = '1.13.1';
-
-  // Establish the root object, `window` (`self`) in the browser, `global`
-  // on the server, or `this` in some virtual machines. We use `self`
-  // instead of `window` for `WebWorker` support.
-  var root = typeof self == 'object' && self.self === self && self ||
-            typeof global == 'object' && global.global === global && global ||
-            Function('return this')() ||
-            {};
-
-  // Save bytes in the minified (but not gzipped) version:
-  var ArrayProto = Array.prototype, ObjProto = Object.prototype;
-  var SymbolProto = typeof Symbol !== 'undefined' ? Symbol.prototype : null;
-
-  // Create quick reference variables for speed access to core prototypes.
-  var push = ArrayProto.push,
-      slice = ArrayProto.slice,
-      toString = ObjProto.toString,
-      hasOwnProperty = ObjProto.hasOwnProperty;
-
-  // Modern feature detection.
-  var supportsArrayBuffer = typeof ArrayBuffer !== 'undefined',
-      supportsDataView = typeof DataView !== 'undefined';
-
-  // All **ECMAScript 5+** native function implementations that we hope to use
-  // are declared here.
-  var nativeIsArray = Array.isArray,
-      nativeKeys = Object.keys,
-      nativeCreate = Object.create,
-      nativeIsView = supportsArrayBuffer && ArrayBuffer.isView;
-
-  // Create references to these builtin functions because we override them.
-  var _isNaN = isNaN,
-      _isFinite = isFinite;
-
-  // Keys in IE < 9 that won't be iterated by `for key in ...` and thus missed.
-  var hasEnumBug = !{toString: null}.propertyIsEnumerable('toString');
-  var nonEnumerableProps = ['valueOf', 'isPrototypeOf', 'toString',
-    'propertyIsEnumerable', 'hasOwnProperty', 'toLocaleString'];
-
-  // The largest integer that can be represented exactly.
-  var MAX_ARRAY_INDEX = Math.pow(2, 53) - 1;
-
-  // Some functions take a variable number of arguments, or a few expected
-  // arguments at the beginning and then a variable number of values to operate
-  // on. This helper accumulates all remaining arguments past the function’s
-  // argument length (or an explicit `startIndex`), into an array that becomes
-  // the last argument. Similar to ES6’s "rest parameter".
-  function restArguments(func, startIndex) {
-    startIndex = startIndex == null ? func.length - 1 : +startIndex;
-    return function() {
-      var length = Math.max(arguments.length - startIndex, 0),
-          rest = Array(length),
-          index = 0;
-      for (; index < length; index++) {
-        rest[index] = arguments[index + startIndex];
-      }
-      switch (startIndex) {
-        case 0: return func.call(this, rest);
-        case 1: return func.call(this, arguments[0], rest);
-        case 2: return func.call(this, arguments[0], arguments[1], rest);
-      }
-      var args = Array(startIndex + 1);
-      for (index = 0; index < startIndex; index++) {
-        args[index] = arguments[index];
-      }
-      args[startIndex] = rest;
-      return func.apply(this, args);
-    };
-  }
-
-  // Is a given variable an object?
-  function isObject(obj) {
-    var type = typeof obj;
-    return type === 'function' || type === 'object' && !!obj;
-  }
-
-  // Is a given value equal to null?
-  function isNull(obj) {
-    return obj === null;
-  }
-
-  // Is a given variable undefined?
-  function isUndefined(obj) {
-    return obj === void 0;
-  }
-
-  // Is a given value a boolean?
-  function isBoolean(obj) {
-    return obj === true || obj === false || toString.call(obj) === '[object Boolean]';
-  }
-
-  // Is a given value a DOM element?
-  function isElement(obj) {
-    return !!(obj && obj.nodeType === 1);
-  }
-
-  // Internal function for creating a `toString`-based type tester.
-  function tagTester(name) {
-    var tag = '[object ' + name + ']';
-    return function(obj) {
-      return toString.call(obj) === tag;
-    };
-  }
-
-  var isString = tagTester('String');
-
-  var isNumber = tagTester('Number');
-
-  var isDate = tagTester('Date');
-
-  var isRegExp = tagTester('RegExp');
-
-  var isError = tagTester('Error');
-
-  var isSymbol = tagTester('Symbol');
-
-  var isArrayBuffer = tagTester('ArrayBuffer');
-
-  var isFunction = tagTester('Function');
-
-  // Optimize `isFunction` if appropriate. Work around some `typeof` bugs in old
-  // v8, IE 11 (#1621), Safari 8 (#1929), and PhantomJS (#2236).
-  var nodelist = root.document && root.document.childNodes;
-  if (typeof /./ != 'function' && typeof Int8Array != 'object' && typeof nodelist != 'function') {
-    isFunction = function(obj) {
-      return typeof obj == 'function' || false;
-    };
-  }
-
-  var isFunction$1 = isFunction;
-
-  var hasObjectTag = tagTester('Object');
-
-  // In IE 10 - Edge 13, `DataView` has string tag `'[object Object]'`.
-  // In IE 11, the most common among them, this problem also applies to
-  // `Map`, `WeakMap` and `Set`.
-  var hasStringTagBug = (
-        supportsDataView && hasObjectTag(new DataView(new ArrayBuffer(8)))
-      ),
-      isIE11 = (typeof Map !== 'undefined' && hasObjectTag(new Map));
-
-  var isDataView = tagTester('DataView');
-
-  // In IE 10 - Edge 13, we need a different heuristic
-  // to determine whether an object is a `DataView`.
-  function ie10IsDataView(obj) {
-    return obj != null && isFunction$1(obj.getInt8) && isArrayBuffer(obj.buffer);
-  }
-
-  var isDataView$1 = (hasStringTagBug ? ie10IsDataView : isDataView);
-
-  // Is a given value an array?
-  // Delegates to ECMA5's native `Array.isArray`.
-  var isArray = nativeIsArray || tagTester('Array');
-
-  // Internal function to check whether `key` is an own property name of `obj`.
-  function has$1(obj, key) {
-    return obj != null && hasOwnProperty.call(obj, key);
-  }
-
-  var isArguments = tagTester('Arguments');
-
-  // Define a fallback version of the method in browsers (ahem, IE < 9), where
-  // there isn't any inspectable "Arguments" type.
-  (function() {
-    if (!isArguments(arguments)) {
-      isArguments = function(obj) {
-        return has$1(obj, 'callee');
-      };
-    }
-  }());
-
-  var isArguments$1 = isArguments;
-
-  // Is a given object a finite number?
-  function isFinite$1(obj) {
-    return !isSymbol(obj) && _isFinite(obj) && !isNaN(parseFloat(obj));
-  }
-
-  // Is the given value `NaN`?
-  function isNaN$1(obj) {
-    return isNumber(obj) && _isNaN(obj);
-  }
-
-  // Predicate-generating function. Often useful outside of Underscore.
-  function constant(value) {
-    return function() {
-      return value;
-    };
-  }
-
-  // Common internal logic for `isArrayLike` and `isBufferLike`.
-  function createSizePropertyCheck(getSizeProperty) {
-    return function(collection) {
-      var sizeProperty = getSizeProperty(collection);
-      return typeof sizeProperty == 'number' && sizeProperty >= 0 && sizeProperty <= MAX_ARRAY_INDEX;
-    }
-  }
-
-  // Internal helper to generate a function to obtain property `key` from `obj`.
-  function shallowProperty(key) {
-    return function(obj) {
-      return obj == null ? void 0 : obj[key];
-    };
-  }
-
-  // Internal helper to obtain the `byteLength` property of an object.
-  var getByteLength = shallowProperty('byteLength');
-
-  // Internal helper to determine whether we should spend extensive checks against
-  // `ArrayBuffer` et al.
-  var isBufferLike = createSizePropertyCheck(getByteLength);
-
-  // Is a given value a typed array?
-  var typedArrayPattern = /\[object ((I|Ui)nt(8|16|32)|Float(32|64)|Uint8Clamped|Big(I|Ui)nt64)Array\]/;
-  function isTypedArray(obj) {
-    // `ArrayBuffer.isView` is the most future-proof, so use it when available.
-    // Otherwise, fall back on the above regular expression.
-    return nativeIsView ? (nativeIsView(obj) && !isDataView$1(obj)) :
-                  isBufferLike(obj) && typedArrayPattern.test(toString.call(obj));
-  }
-
-  var isTypedArray$1 = supportsArrayBuffer ? isTypedArray : constant(false);
-
-  // Internal helper to obtain the `length` property of an object.
-  var getLength = shallowProperty('length');
-
-  // Internal helper to create a simple lookup structure.
-  // `collectNonEnumProps` used to depend on `_.contains`, but this led to
-  // circular imports. `emulatedSet` is a one-off solution that only works for
-  // arrays of strings.
-  function emulatedSet(keys) {
-    var hash = {};
-    for (var l = keys.length, i = 0; i < l; ++i) hash[keys[i]] = true;
-    return {
-      contains: function(key) { return hash[key]; },
-      push: function(key) {
-        hash[key] = true;
-        return keys.push(key);
-      }
-    };
-  }
-
-  // Internal helper. Checks `keys` for the presence of keys in IE < 9 that won't
-  // be iterated by `for key in ...` and thus missed. Extends `keys` in place if
-  // needed.
-  function collectNonEnumProps(obj, keys) {
-    keys = emulatedSet(keys);
-    var nonEnumIdx = nonEnumerableProps.length;
-    var constructor = obj.constructor;
-    var proto = isFunction$1(constructor) && constructor.prototype || ObjProto;
-
-    // Constructor is a special case.
-    var prop = 'constructor';
-    if (has$1(obj, prop) && !keys.contains(prop)) keys.push(prop);
-
-    while (nonEnumIdx--) {
-      prop = nonEnumerableProps[nonEnumIdx];
-      if (prop in obj && obj[prop] !== proto[prop] && !keys.contains(prop)) {
-        keys.push(prop);
-      }
-    }
-  }
-
-  // Retrieve the names of an object's own properties.
-  // Delegates to **ECMAScript 5**'s native `Object.keys`.
-  function keys(obj) {
-    if (!isObject(obj)) return [];
-    if (nativeKeys) return nativeKeys(obj);
-    var keys = [];
-    for (var key in obj) if (has$1(obj, key)) keys.push(key);
-    // Ahem, IE < 9.
-    if (hasEnumBug) collectNonEnumProps(obj, keys);
-    return keys;
-  }
-
-  // Is a given array, string, or object empty?
-  // An "empty" object has no enumerable own-properties.
-  function isEmpty(obj) {
-    if (obj == null) return true;
-    // Skip the more expensive `toString`-based type checks if `obj` has no
-    // `.length`.
-    var length = getLength(obj);
-    if (typeof length == 'number' && (
-      isArray(obj) || isString(obj) || isArguments$1(obj)
-    )) return length === 0;
-    return getLength(keys(obj)) === 0;
-  }
-
-  // Returns whether an object has a given set of `key:value` pairs.
-  function isMatch(object, attrs) {
-    var _keys = keys(attrs), length = _keys.length;
-    if (object == null) return !length;
-    var obj = Object(object);
-    for (var i = 0; i < length; i++) {
-      var key = _keys[i];
-      if (attrs[key] !== obj[key] || !(key in obj)) return false;
-    }
-    return true;
-  }
-
-  // If Underscore is called as a function, it returns a wrapped object that can
-  // be used OO-style. This wrapper holds altered versions of all functions added
-  // through `_.mixin`. Wrapped objects may be chained.
-  function _$1(obj) {
-    if (obj instanceof _$1) return obj;
-    if (!(this instanceof _$1)) return new _$1(obj);
-    this._wrapped = obj;
-  }
-
-  _$1.VERSION = VERSION;
-
-  // Extracts the result from a wrapped and chained object.
-  _$1.prototype.value = function() {
-    return this._wrapped;
-  };
-
-  // Provide unwrapping proxies for some methods used in engine operations
-  // such as arithmetic and JSON stringification.
-  _$1.prototype.valueOf = _$1.prototype.toJSON = _$1.prototype.value;
-
-  _$1.prototype.toString = function() {
-    return String(this._wrapped);
-  };
-
-  // Internal function to wrap or shallow-copy an ArrayBuffer,
-  // typed array or DataView to a new view, reusing the buffer.
-  function toBufferView(bufferSource) {
-    return new Uint8Array(
-      bufferSource.buffer || bufferSource,
-      bufferSource.byteOffset || 0,
-      getByteLength(bufferSource)
-    );
-  }
-
-  // We use this string twice, so give it a name for minification.
-  var tagDataView = '[object DataView]';
-
-  // Internal recursive comparison function for `_.isEqual`.
-  function eq(a, b, aStack, bStack) {
-    // Identical objects are equal. `0 === -0`, but they aren't identical.
-    // See the [Harmony `egal` proposal](https://wiki.ecmascript.org/doku.php?id=harmony:egal).
-    if (a === b) return a !== 0 || 1 / a === 1 / b;
-    // `null` or `undefined` only equal to itself (strict comparison).
-    if (a == null || b == null) return false;
-    // `NaN`s are equivalent, but non-reflexive.
-    if (a !== a) return b !== b;
-    // Exhaust primitive checks
-    var type = typeof a;
-    if (type !== 'function' && type !== 'object' && typeof b != 'object') return false;
-    return deepEq(a, b, aStack, bStack);
-  }
-
-  // Internal recursive comparison function for `_.isEqual`.
-  function deepEq(a, b, aStack, bStack) {
-    // Unwrap any wrapped objects.
-    if (a instanceof _$1) a = a._wrapped;
-    if (b instanceof _$1) b = b._wrapped;
-    // Compare `[[Class]]` names.
-    var className = toString.call(a);
-    if (className !== toString.call(b)) return false;
-    // Work around a bug in IE 10 - Edge 13.
-    if (hasStringTagBug && className == '[object Object]' && isDataView$1(a)) {
-      if (!isDataView$1(b)) return false;
-      className = tagDataView;
-    }
-    switch (className) {
-      // These types are compared by value.
-      case '[object RegExp]':
-        // RegExps are coerced to strings for comparison (Note: '' + /a/i === '/a/i')
-      case '[object String]':
-        // Primitives and their corresponding object wrappers are equivalent; thus, `"5"` is
-        // equivalent to `new String("5")`.
-        return '' + a === '' + b;
-      case '[object Number]':
-        // `NaN`s are equivalent, but non-reflexive.
-        // Object(NaN) is equivalent to NaN.
-        if (+a !== +a) return +b !== +b;
-        // An `egal` comparison is performed for other numeric values.
-        return +a === 0 ? 1 / +a === 1 / b : +a === +b;
-      case '[object Date]':
-      case '[object Boolean]':
-        // Coerce dates and booleans to numeric primitive values. Dates are compared by their
-        // millisecond representations. Note that invalid dates with millisecond representations
-        // of `NaN` are not equivalent.
-        return +a === +b;
-      case '[object Symbol]':
-        return SymbolProto.valueOf.call(a) === SymbolProto.valueOf.call(b);
-      case '[object ArrayBuffer]':
-      case tagDataView:
-        // Coerce to typed array so we can fall through.
-        return deepEq(toBufferView(a), toBufferView(b), aStack, bStack);
-    }
-
-    var areArrays = className === '[object Array]';
-    if (!areArrays && isTypedArray$1(a)) {
-        var byteLength = getByteLength(a);
-        if (byteLength !== getByteLength(b)) return false;
-        if (a.buffer === b.buffer && a.byteOffset === b.byteOffset) return true;
-        areArrays = true;
-    }
-    if (!areArrays) {
-      if (typeof a != 'object' || typeof b != 'object') return false;
-
-      // Objects with different constructors are not equivalent, but `Object`s or `Array`s
-      // from different frames are.
-      var aCtor = a.constructor, bCtor = b.constructor;
-      if (aCtor !== bCtor && !(isFunction$1(aCtor) && aCtor instanceof aCtor &&
-                               isFunction$1(bCtor) && bCtor instanceof bCtor)
-                          && ('constructor' in a && 'constructor' in b)) {
-        return false;
-      }
-    }
-    // Assume equality for cyclic structures. The algorithm for detecting cyclic
-    // structures is adapted from ES 5.1 section 15.12.3, abstract operation `JO`.
-
-    // Initializing stack of traversed objects.
-    // It's done here since we only need them for objects and arrays comparison.
-    aStack = aStack || [];
-    bStack = bStack || [];
-    var length = aStack.length;
-    while (length--) {
-      // Linear search. Performance is inversely proportional to the number of
-      // unique nested structures.
-      if (aStack[length] === a) return bStack[length] === b;
-    }
-
-    // Add the first object to the stack of traversed objects.
-    aStack.push(a);
-    bStack.push(b);
-
-    // Recursively compare objects and arrays.
-    if (areArrays) {
-      // Compare array lengths to determine if a deep comparison is necessary.
-      length = a.length;
-      if (length !== b.length) return false;
-      // Deep compare the contents, ignoring non-numeric properties.
-      while (length--) {
-        if (!eq(a[length], b[length], aStack, bStack)) return false;
-      }
-    } else {
-      // Deep compare objects.
-      var _keys = keys(a), key;
-      length = _keys.length;
-      // Ensure that both objects contain the same number of properties before comparing deep equality.
-      if (keys(b).length !== length) return false;
-      while (length--) {
-        // Deep compare each member
-        key = _keys[length];
-        if (!(has$1(b, key) && eq(a[key], b[key], aStack, bStack))) return false;
-      }
-    }
-    // Remove the first object from the stack of traversed objects.
-    aStack.pop();
-    bStack.pop();
-    return true;
-  }
-
-  // Perform a deep comparison to check if two objects are equal.
-  function isEqual(a, b) {
-    return eq(a, b);
-  }
-
-  // Retrieve all the enumerable property names of an object.
-  function allKeys(obj) {
-    if (!isObject(obj)) return [];
-    var keys = [];
-    for (var key in obj) keys.push(key);
-    // Ahem, IE < 9.
-    if (hasEnumBug) collectNonEnumProps(obj, keys);
-    return keys;
-  }
-
-  // Since the regular `Object.prototype.toString` type tests don't work for
-  // some types in IE 11, we use a fingerprinting heuristic instead, based
-  // on the methods. It's not great, but it's the best we got.
-  // The fingerprint method lists are defined below.
-  function ie11fingerprint(methods) {
-    var length = getLength(methods);
-    return function(obj) {
-      if (obj == null) return false;
-      // `Map`, `WeakMap` and `Set` have no enumerable keys.
-      var keys = allKeys(obj);
-      if (getLength(keys)) return false;
-      for (var i = 0; i < length; i++) {
-        if (!isFunction$1(obj[methods[i]])) return false;
-      }
-      // If we are testing against `WeakMap`, we need to ensure that
-      // `obj` doesn't have a `forEach` method in order to distinguish
-      // it from a regular `Map`.
-      return methods !== weakMapMethods || !isFunction$1(obj[forEachName]);
-    };
-  }
-
-  // In the interest of compact minification, we write
-  // each string in the fingerprints only once.
-  var forEachName = 'forEach',
-      hasName = 'has',
-      commonInit = ['clear', 'delete'],
-      mapTail = ['get', hasName, 'set'];
-
-  // `Map`, `WeakMap` and `Set` each have slightly different
-  // combinations of the above sublists.
-  var mapMethods = commonInit.concat(forEachName, mapTail),
-      weakMapMethods = commonInit.concat(mapTail),
-      setMethods = ['add'].concat(commonInit, forEachName, hasName);
-
-  var isMap = isIE11 ? ie11fingerprint(mapMethods) : tagTester('Map');
-
-  var isWeakMap = isIE11 ? ie11fingerprint(weakMapMethods) : tagTester('WeakMap');
-
-  var isSet = isIE11 ? ie11fingerprint(setMethods) : tagTester('Set');
-
-  var isWeakSet = tagTester('WeakSet');
-
-  // Retrieve the values of an object's properties.
-  function values(obj) {
-    var _keys = keys(obj);
-    var length = _keys.length;
-    var values = Array(length);
-    for (var i = 0; i < length; i++) {
-      values[i] = obj[_keys[i]];
-    }
-    return values;
-  }
-
-  // Convert an object into a list of `[key, value]` pairs.
-  // The opposite of `_.object` with one argument.
-  function pairs(obj) {
-    var _keys = keys(obj);
-    var length = _keys.length;
-    var pairs = Array(length);
-    for (var i = 0; i < length; i++) {
-      pairs[i] = [_keys[i], obj[_keys[i]]];
-    }
-    return pairs;
-  }
-
-  // Invert the keys and values of an object. The values must be serializable.
-  function invert(obj) {
-    var result = {};
-    var _keys = keys(obj);
-    for (var i = 0, length = _keys.length; i < length; i++) {
-      result[obj[_keys[i]]] = _keys[i];
-    }
-    return result;
-  }
-
-  // Return a sorted list of the function names available on the object.
-  function functions(obj) {
-    var names = [];
-    for (var key in obj) {
-      if (isFunction$1(obj[key])) names.push(key);
-    }
-    return names.sort();
-  }
-
-  // An internal function for creating assigner functions.
-  function createAssigner(keysFunc, defaults) {
-    return function(obj) {
-      var length = arguments.length;
-      if (defaults) obj = Object(obj);
-      if (length < 2 || obj == null) return obj;
-      for (var index = 1; index < length; index++) {
-        var source = arguments[index],
-            keys = keysFunc(source),
-            l = keys.length;
-        for (var i = 0; i < l; i++) {
-          var key = keys[i];
-          if (!defaults || obj[key] === void 0) obj[key] = source[key];
-        }
-      }
-      return obj;
-    };
-  }
-
-  // Extend a given object with all the properties in passed-in object(s).
-  var extend = createAssigner(allKeys);
-
-  // Assigns a given object with all the own properties in the passed-in
-  // object(s).
-  // (https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Object/assign)
-  var extendOwn = createAssigner(keys);
-
-  // Fill in a given object with default properties.
-  var defaults = createAssigner(allKeys, true);
-
-  // Create a naked function reference for surrogate-prototype-swapping.
-  function ctor() {
-    return function(){};
-  }
-
-  // An internal function for creating a new object that inherits from another.
-  function baseCreate(prototype) {
-    if (!isObject(prototype)) return {};
-    if (nativeCreate) return nativeCreate(prototype);
-    var Ctor = ctor();
-    Ctor.prototype = prototype;
-    var result = new Ctor;
-    Ctor.prototype = null;
-    return result;
-  }
-
-  // Creates an object that inherits from the given prototype object.
-  // If additional properties are provided then they will be added to the
-  // created object.
-  function create(prototype, props) {
-    var result = baseCreate(prototype);
-    if (props) extendOwn(result, props);
-    return result;
-  }
-
-  // Create a (shallow-cloned) duplicate of an object.
-  function clone(obj) {
-    if (!isObject(obj)) return obj;
-    return isArray(obj) ? obj.slice() : extend({}, obj);
-  }
-
-  // Invokes `interceptor` with the `obj` and then returns `obj`.
-  // The primary purpose of this method is to "tap into" a method chain, in
-  // order to perform operations on intermediate results within the chain.
-  function tap(obj, interceptor) {
-    interceptor(obj);
-    return obj;
-  }
-
-  // Normalize a (deep) property `path` to array.
-  // Like `_.iteratee`, this function can be customized.
-  function toPath$1(path) {
-    return isArray(path) ? path : [path];
-  }
-  _$1.toPath = toPath$1;
-
-  // Internal wrapper for `_.toPath` to enable minification.
-  // Similar to `cb` for `_.iteratee`.
-  function toPath(path) {
-    return _$1.toPath(path);
-  }
-
-  // Internal function to obtain a nested property in `obj` along `path`.
-  function deepGet(obj, path) {
-    var length = path.length;
-    for (var i = 0; i < length; i++) {
-      if (obj == null) return void 0;
-      obj = obj[path[i]];
-    }
-    return length ? obj : void 0;
-  }
-
-  // Get the value of the (deep) property on `path` from `object`.
-  // If any property in `path` does not exist or if the value is
-  // `undefined`, return `defaultValue` instead.
-  // The `path` is normalized through `_.toPath`.
-  function get(object, path, defaultValue) {
-    var value = deepGet(object, toPath(path));
-    return isUndefined(value) ? defaultValue : value;
-  }
-
-  // Shortcut function for checking if an object has a given property directly on
-  // itself (in other words, not on a prototype). Unlike the internal `has`
-  // function, this public version can also traverse nested properties.
-  function has(obj, path) {
-    path = toPath(path);
-    var length = path.length;
-    for (var i = 0; i < length; i++) {
-      var key = path[i];
-      if (!has$1(obj, key)) return false;
-      obj = obj[key];
-    }
-    return !!length;
-  }
-
-  // Keep the identity function around for default iteratees.
-  function identity(value) {
-    return value;
-  }
-
-  // Returns a predicate for checking whether an object has a given set of
-  // `key:value` pairs.
-  function matcher(attrs) {
-    attrs = extendOwn({}, attrs);
-    return function(obj) {
-      return isMatch(obj, attrs);
-    };
-  }
-
-  // Creates a function that, when passed an object, will traverse that object’s
-  // properties down the given `path`, specified as an array of keys or indices.
-  function property(path) {
-    path = toPath(path);
-    return function(obj) {
-      return deepGet(obj, path);
-    };
-  }
-
-  // Internal function that returns an efficient (for current engines) version
-  // of the passed-in callback, to be repeatedly applied in other Underscore
-  // functions.
-  function optimizeCb(func, context, argCount) {
-    if (context === void 0) return func;
-    switch (argCount == null ? 3 : argCount) {
-      case 1: return function(value) {
-        return func.call(context, value);
-      };
-      // The 2-argument case is omitted because we’re not using it.
-      case 3: return function(value, index, collection) {
-        return func.call(context, value, index, collection);
-      };
-      case 4: return function(accumulator, value, index, collection) {
-        return func.call(context, accumulator, value, index, collection);
-      };
-    }
-    return function() {
-      return func.apply(context, arguments);
-    };
-  }
-
-  // An internal function to generate callbacks that can be applied to each
-  // element in a collection, returning the desired result — either `_.identity`,
-  // an arbitrary callback, a property matcher, or a property accessor.
-  function baseIteratee(value, context, argCount) {
-    if (value == null) return identity;
-    if (isFunction$1(value)) return optimizeCb(value, context, argCount);
-    if (isObject(value) && !isArray(value)) return matcher(value);
-    return property(value);
-  }
-
-  // External wrapper for our callback generator. Users may customize
-  // `_.iteratee` if they want additional predicate/iteratee shorthand styles.
-  // This abstraction hides the internal-only `argCount` argument.
-  function iteratee(value, context) {
-    return baseIteratee(value, context, Infinity);
-  }
-  _$1.iteratee = iteratee;
-
-  // The function we call internally to generate a callback. It invokes
-  // `_.iteratee` if overridden, otherwise `baseIteratee`.
-  function cb(value, context, argCount) {
-    if (_$1.iteratee !== iteratee) return _$1.iteratee(value, context);
-    return baseIteratee(value, context, argCount);
-  }
-
-  // Returns the results of applying the `iteratee` to each element of `obj`.
-  // In contrast to `_.map` it returns an object.
-  function mapObject(obj, iteratee, context) {
-    iteratee = cb(iteratee, context);
-    var _keys = keys(obj),
-        length = _keys.length,
-        results = {};
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys[index];
-      results[currentKey] = iteratee(obj[currentKey], currentKey, obj);
-    }
-    return results;
-  }
-
-  // Predicate-generating function. Often useful outside of Underscore.
-  function noop(){}
-
-  // Generates a function for a given object that returns a given property.
-  function propertyOf(obj) {
-    if (obj == null) return noop;
-    return function(path) {
-      return get(obj, path);
-    };
-  }
-
-  // Run a function **n** times.
-  function times(n, iteratee, context) {
-    var accum = Array(Math.max(0, n));
-    iteratee = optimizeCb(iteratee, context, 1);
-    for (var i = 0; i < n; i++) accum[i] = iteratee(i);
-    return accum;
-  }
-
-  // Return a random integer between `min` and `max` (inclusive).
-  function random(min, max) {
-    if (max == null) {
-      max = min;
-      min = 0;
-    }
-    return min + Math.floor(Math.random() * (max - min + 1));
-  }
-
-  // A (possibly faster) way to get the current timestamp as an integer.
-  var now = Date.now || function() {
-    return new Date().getTime();
-  };
-
-  // Internal helper to generate functions for escaping and unescaping strings
-  // to/from HTML interpolation.
-  function createEscaper(map) {
-    var escaper = function(match) {
-      return map[match];
-    };
-    // Regexes for identifying a key that needs to be escaped.
-    var source = '(?:' + keys(map).join('|') + ')';
-    var testRegexp = RegExp(source);
-    var replaceRegexp = RegExp(source, 'g');
-    return function(string) {
-      string = string == null ? '' : '' + string;
-      return testRegexp.test(string) ? string.replace(replaceRegexp, escaper) : string;
-    };
-  }
-
-  // Internal list of HTML entities for escaping.
-  var escapeMap = {
-    '&': '&amp;',
-    '<': '&lt;',
-    '>': '&gt;',
-    '"': '&quot;',
-    "'": '&#x27;',
-    '`': '&#x60;'
-  };
-
-  // Function for escaping strings to HTML interpolation.
-  var _escape = createEscaper(escapeMap);
-
-  // Internal list of HTML entities for unescaping.
-  var unescapeMap = invert(escapeMap);
-
-  // Function for unescaping strings from HTML interpolation.
-  var _unescape = createEscaper(unescapeMap);
-
-  // By default, Underscore uses ERB-style template delimiters. Change the
-  // following template settings to use alternative delimiters.
-  var templateSettings = _$1.templateSettings = {
-    evaluate: /<%([\s\S]+?)%>/g,
-    interpolate: /<%=([\s\S]+?)%>/g,
-    escape: /<%-([\s\S]+?)%>/g
-  };
-
-  // When customizing `_.templateSettings`, if you don't want to define an
-  // interpolation, evaluation or escaping regex, we need one that is
-  // guaranteed not to match.
-  var noMatch = /(.)^/;
-
-  // Certain characters need to be escaped so that they can be put into a
-  // string literal.
-  var escapes = {
-    "'": "'",
-    '\\': '\\',
-    '\r': 'r',
-    '\n': 'n',
-    '\u2028': 'u2028',
-    '\u2029': 'u2029'
-  };
-
-  var escapeRegExp = /\\|'|\r|\n|\u2028|\u2029/g;
-
-  function escapeChar(match) {
-    return '\\' + escapes[match];
-  }
-
-  // In order to prevent third-party code injection through
-  // `_.templateSettings.variable`, we test it against the following regular
-  // expression. It is intentionally a bit more liberal than just matching valid
-  // identifiers, but still prevents possible loopholes through defaults or
-  // destructuring assignment.
-  var bareIdentifier = /^\s*(\w|\$)+\s*$/;
-
-  // JavaScript micro-templating, similar to John Resig's implementation.
-  // Underscore templating handles arbitrary delimiters, preserves whitespace,
-  // and correctly escapes quotes within interpolated code.
-  // NB: `oldSettings` only exists for backwards compatibility.
-  function template(text, settings, oldSettings) {
-    if (!settings && oldSettings) settings = oldSettings;
-    settings = defaults({}, settings, _$1.templateSettings);
-
-    // Combine delimiters into one regular expression via alternation.
-    var matcher = RegExp([
-      (settings.escape || noMatch).source,
-      (settings.interpolate || noMatch).source,
-      (settings.evaluate || noMatch).source
-    ].join('|') + '|$', 'g');
-
-    // Compile the template source, escaping string literals appropriately.
-    var index = 0;
-    var source = "__p+='";
-    text.replace(matcher, function(match, escape, interpolate, evaluate, offset) {
-      source += text.slice(index, offset).replace(escapeRegExp, escapeChar);
-      index = offset + match.length;
-
-      if (escape) {
-        source += "'+\n((__t=(" + escape + "))==null?'':_.escape(__t))+\n'";
-      } else if (interpolate) {
-        source += "'+\n((__t=(" + interpolate + "))==null?'':__t)+\n'";
-      } else if (evaluate) {
-        source += "';\n" + evaluate + "\n__p+='";
-      }
-
-      // Adobe VMs need the match returned to produce the correct offset.
-      return match;
-    });
-    source += "';\n";
-
-    var argument = settings.variable;
-    if (argument) {
-      // Insure against third-party code injection. (CVE-2021-23358)
-      if (!bareIdentifier.test(argument)) throw new Error(
-        'variable is not a bare identifier: ' + argument
-      );
-    } else {
-      // If a variable is not specified, place data values in local scope.
-      source = 'with(obj||{}){\n' + source + '}\n';
-      argument = 'obj';
-    }
-
-    source = "var __t,__p='',__j=Array.prototype.join," +
-      "print=function(){__p+=__j.call(arguments,'');};\n" +
-      source + 'return __p;\n';
-
-    var render;
-    try {
-      render = new Function(argument, '_', source);
-    } catch (e) {
-      e.source = source;
-      throw e;
-    }
-
-    var template = function(data) {
-      return render.call(this, data, _$1);
-    };
-
-    // Provide the compiled source as a convenience for precompilation.
-    template.source = 'function(' + argument + '){\n' + source + '}';
-
-    return template;
-  }
-
-  // Traverses the children of `obj` along `path`. If a child is a function, it
-  // is invoked with its parent as context. Returns the value of the final
-  // child, or `fallback` if any child is undefined.
-  function result(obj, path, fallback) {
-    path = toPath(path);
-    var length = path.length;
-    if (!length) {
-      return isFunction$1(fallback) ? fallback.call(obj) : fallback;
-    }
-    for (var i = 0; i < length; i++) {
-      var prop = obj == null ? void 0 : obj[path[i]];
-      if (prop === void 0) {
-        prop = fallback;
-        i = length; // Ensure we don't continue iterating.
-      }
-      obj = isFunction$1(prop) ? prop.call(obj) : prop;
-    }
-    return obj;
-  }
-
-  // Generate a unique integer id (unique within the entire client session).
-  // Useful for temporary DOM ids.
-  var idCounter = 0;
-  function uniqueId(prefix) {
-    var id = ++idCounter + '';
-    return prefix ? prefix + id : id;
-  }
-
-  // Start chaining a wrapped Underscore object.
-  function chain(obj) {
-    var instance = _$1(obj);
-    instance._chain = true;
-    return instance;
-  }
-
-  // Internal function to execute `sourceFunc` bound to `context` with optional
-  // `args`. Determines whether to execute a function as a constructor or as a
-  // normal function.
-  function executeBound(sourceFunc, boundFunc, context, callingContext, args) {
-    if (!(callingContext instanceof boundFunc)) return sourceFunc.apply(context, args);
-    var self = baseCreate(sourceFunc.prototype);
-    var result = sourceFunc.apply(self, args);
-    if (isObject(result)) return result;
-    return self;
-  }
-
-  // Partially apply a function by creating a version that has had some of its
-  // arguments pre-filled, without changing its dynamic `this` context. `_` acts
-  // as a placeholder by default, allowing any combination of arguments to be
-  // pre-filled. Set `_.partial.placeholder` for a custom placeholder argument.
-  var partial = restArguments(function(func, boundArgs) {
-    var placeholder = partial.placeholder;
-    var bound = function() {
-      var position = 0, length = boundArgs.length;
-      var args = Array(length);
-      for (var i = 0; i < length; i++) {
-        args[i] = boundArgs[i] === placeholder ? arguments[position++] : boundArgs[i];
-      }
-      while (position < arguments.length) args.push(arguments[position++]);
-      return executeBound(func, bound, this, this, args);
-    };
-    return bound;
-  });
-
-  partial.placeholder = _$1;
-
-  // Create a function bound to a given object (assigning `this`, and arguments,
-  // optionally).
-  var bind = restArguments(function(func, context, args) {
-    if (!isFunction$1(func)) throw new TypeError('Bind must be called on a function');
-    var bound = restArguments(function(callArgs) {
-      return executeBound(func, bound, context, this, args.concat(callArgs));
-    });
-    return bound;
-  });
-
-  // Internal helper for collection methods to determine whether a collection
-  // should be iterated as an array or as an object.
-  // Related: https://people.mozilla.org/~jorendorff/es6-draft.html#sec-tolength
-  // Avoids a very nasty iOS 8 JIT bug on ARM-64. #2094
-  var isArrayLike = createSizePropertyCheck(getLength);
-
-  // Internal implementation of a recursive `flatten` function.
-  function flatten$1(input, depth, strict, output) {
-    output = output || [];
-    if (!depth && depth !== 0) {
-      depth = Infinity;
-    } else if (depth <= 0) {
-      return output.concat(input);
-    }
-    var idx = output.length;
-    for (var i = 0, length = getLength(input); i < length; i++) {
-      var value = input[i];
-      if (isArrayLike(value) && (isArray(value) || isArguments$1(value))) {
-        // Flatten current level of array or arguments object.
-        if (depth > 1) {
-          flatten$1(value, depth - 1, strict, output);
-          idx = output.length;
-        } else {
-          var j = 0, len = value.length;
-          while (j < len) output[idx++] = value[j++];
-        }
-      } else if (!strict) {
-        output[idx++] = value;
-      }
-    }
-    return output;
-  }
-
-  // Bind a number of an object's methods to that object. Remaining arguments
-  // are the method names to be bound. Useful for ensuring that all callbacks
-  // defined on an object belong to it.
-  var bindAll = restArguments(function(obj, keys) {
-    keys = flatten$1(keys, false, false);
-    var index = keys.length;
-    if (index < 1) throw new Error('bindAll must be passed function names');
-    while (index--) {
-      var key = keys[index];
-      obj[key] = bind(obj[key], obj);
-    }
-    return obj;
-  });
-
-  // Memoize an expensive function by storing its results.
-  function memoize(func, hasher) {
-    var memoize = function(key) {
-      var cache = memoize.cache;
-      var address = '' + (hasher ? hasher.apply(this, arguments) : key);
-      if (!has$1(cache, address)) cache[address] = func.apply(this, arguments);
-      return cache[address];
-    };
-    memoize.cache = {};
-    return memoize;
-  }
-
-  // Delays a function for the given number of milliseconds, and then calls
-  // it with the arguments supplied.
-  var delay = restArguments(function(func, wait, args) {
-    return setTimeout(function() {
-      return func.apply(null, args);
-    }, wait);
-  });
-
-  // Defers a function, scheduling it to run after the current call stack has
-  // cleared.
-  var defer = partial(delay, _$1, 1);
-
-  // Returns a function, that, when invoked, will only be triggered at most once
-  // during a given window of time. Normally, the throttled function will run
-  // as much as it can, without ever going more than once per `wait` duration;
-  // but if you'd like to disable the execution on the leading edge, pass
-  // `{leading: false}`. To disable execution on the trailing edge, ditto.
-  function throttle(func, wait, options) {
-    var timeout, context, args, result;
-    var previous = 0;
-    if (!options) options = {};
-
-    var later = function() {
-      previous = options.leading === false ? 0 : now();
-      timeout = null;
-      result = func.apply(context, args);
-      if (!timeout) context = args = null;
-    };
-
-    var throttled = function() {
-      var _now = now();
-      if (!previous && options.leading === false) previous = _now;
-      var remaining = wait - (_now - previous);
-      context = this;
-      args = arguments;
-      if (remaining <= 0 || remaining > wait) {
-        if (timeout) {
-          clearTimeout(timeout);
-          timeout = null;
-        }
-        previous = _now;
-        result = func.apply(context, args);
-        if (!timeout) context = args = null;
-      } else if (!timeout && options.trailing !== false) {
-        timeout = setTimeout(later, remaining);
-      }
-      return result;
-    };
-
-    throttled.cancel = function() {
-      clearTimeout(timeout);
-      previous = 0;
-      timeout = context = args = null;
-    };
-
-    return throttled;
-  }
-
-  // When a sequence of calls of the returned function ends, the argument
-  // function is triggered. The end of a sequence is defined by the `wait`
-  // parameter. If `immediate` is passed, the argument function will be
-  // triggered at the beginning of the sequence instead of at the end.
-  function debounce(func, wait, immediate) {
-    var timeout, previous, args, result, context;
-
-    var later = function() {
-      var passed = now() - previous;
-      if (wait > passed) {
-        timeout = setTimeout(later, wait - passed);
-      } else {
-        timeout = null;
-        if (!immediate) result = func.apply(context, args);
-        // This check is needed because `func` can recursively invoke `debounced`.
-        if (!timeout) args = context = null;
-      }
-    };
-
-    var debounced = restArguments(function(_args) {
-      context = this;
-      args = _args;
-      previous = now();
-      if (!timeout) {
-        timeout = setTimeout(later, wait);
-        if (immediate) result = func.apply(context, args);
-      }
-      return result;
-    });
-
-    debounced.cancel = function() {
-      clearTimeout(timeout);
-      timeout = args = context = null;
-    };
-
-    return debounced;
-  }
-
-  // Returns the first function passed as an argument to the second,
-  // allowing you to adjust arguments, run code before and after, and
-  // conditionally execute the original function.
-  function wrap(func, wrapper) {
-    return partial(wrapper, func);
-  }
-
-  // Returns a negated version of the passed-in predicate.
-  function negate(predicate) {
-    return function() {
-      return !predicate.apply(this, arguments);
-    };
-  }
-
-  // Returns a function that is the composition of a list of functions, each
-  // consuming the return value of the function that follows.
-  function compose() {
-    var args = arguments;
-    var start = args.length - 1;
-    return function() {
-      var i = start;
-      var result = args[start].apply(this, arguments);
-      while (i--) result = args[i].call(this, result);
-      return result;
-    };
-  }
-
-  // Returns a function that will only be executed on and after the Nth call.
-  function after(times, func) {
-    return function() {
-      if (--times < 1) {
-        return func.apply(this, arguments);
-      }
-    };
-  }
-
-  // Returns a function that will only be executed up to (but not including) the
-  // Nth call.
-  function before(times, func) {
-    var memo;
-    return function() {
-      if (--times > 0) {
-        memo = func.apply(this, arguments);
-      }
-      if (times <= 1) func = null;
-      return memo;
-    };
-  }
-
-  // Returns a function that will be executed at most one time, no matter how
-  // often you call it. Useful for lazy initialization.
-  var once = partial(before, 2);
-
-  // Returns the first key on an object that passes a truth test.
-  function findKey(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = keys(obj), key;
-    for (var i = 0, length = _keys.length; i < length; i++) {
-      key = _keys[i];
-      if (predicate(obj[key], key, obj)) return key;
-    }
-  }
-
-  // Internal function to generate `_.findIndex` and `_.findLastIndex`.
-  function createPredicateIndexFinder(dir) {
-    return function(array, predicate, context) {
-      predicate = cb(predicate, context);
-      var length = getLength(array);
-      var index = dir > 0 ? 0 : length - 1;
-      for (; index >= 0 && index < length; index += dir) {
-        if (predicate(array[index], index, array)) return index;
-      }
-      return -1;
-    };
-  }
-
-  // Returns the first index on an array-like that passes a truth test.
-  var findIndex = createPredicateIndexFinder(1);
-
-  // Returns the last index on an array-like that passes a truth test.
-  var findLastIndex = createPredicateIndexFinder(-1);
-
-  // Use a comparator function to figure out the smallest index at which
-  // an object should be inserted so as to maintain order. Uses binary search.
-  function sortedIndex(array, obj, iteratee, context) {
-    iteratee = cb(iteratee, context, 1);
-    var value = iteratee(obj);
-    var low = 0, high = getLength(array);
-    while (low < high) {
-      var mid = Math.floor((low + high) / 2);
-      if (iteratee(array[mid]) < value) low = mid + 1; else high = mid;
-    }
-    return low;
-  }
-
-  // Internal function to generate the `_.indexOf` and `_.lastIndexOf` functions.
-  function createIndexFinder(dir, predicateFind, sortedIndex) {
-    return function(array, item, idx) {
-      var i = 0, length = getLength(array);
-      if (typeof idx == 'number') {
-        if (dir > 0) {
-          i = idx >= 0 ? idx : Math.max(idx + length, i);
-        } else {
-          length = idx >= 0 ? Math.min(idx + 1, length) : idx + length + 1;
-        }
-      } else if (sortedIndex && idx && length) {
-        idx = sortedIndex(array, item);
-        return array[idx] === item ? idx : -1;
-      }
-      if (item !== item) {
-        idx = predicateFind(slice.call(array, i, length), isNaN$1);
-        return idx >= 0 ? idx + i : -1;
-      }
-      for (idx = dir > 0 ? i : length - 1; idx >= 0 && idx < length; idx += dir) {
-        if (array[idx] === item) return idx;
-      }
-      return -1;
-    };
-  }
-
-  // Return the position of the first occurrence of an item in an array,
-  // or -1 if the item is not included in the array.
-  // If the array is large and already in sort order, pass `true`
-  // for **isSorted** to use binary search.
-  var indexOf = createIndexFinder(1, findIndex, sortedIndex);
-
-  // Return the position of the last occurrence of an item in an array,
-  // or -1 if the item is not included in the array.
-  var lastIndexOf = createIndexFinder(-1, findLastIndex);
-
-  // Return the first value which passes a truth test.
-  function find(obj, predicate, context) {
-    var keyFinder = isArrayLike(obj) ? findIndex : findKey;
-    var key = keyFinder(obj, predicate, context);
-    if (key !== void 0 && key !== -1) return obj[key];
-  }
-
-  // Convenience version of a common use case of `_.find`: getting the first
-  // object containing specific `key:value` pairs.
-  function findWhere(obj, attrs) {
-    return find(obj, matcher(attrs));
-  }
-
-  // The cornerstone for collection functions, an `each`
-  // implementation, aka `forEach`.
-  // Handles raw objects in addition to array-likes. Treats all
-  // sparse array-likes as if they were dense.
-  function each(obj, iteratee, context) {
-    iteratee = optimizeCb(iteratee, context);
-    var i, length;
-    if (isArrayLike(obj)) {
-      for (i = 0, length = obj.length; i < length; i++) {
-        iteratee(obj[i], i, obj);
-      }
-    } else {
-      var _keys = keys(obj);
-      for (i = 0, length = _keys.length; i < length; i++) {
-        iteratee(obj[_keys[i]], _keys[i], obj);
-      }
-    }
-    return obj;
-  }
-
-  // Return the results of applying the iteratee to each element.
-  function map(obj, iteratee, context) {
-    iteratee = cb(iteratee, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length,
-        results = Array(length);
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      results[index] = iteratee(obj[currentKey], currentKey, obj);
-    }
-    return results;
-  }
-
-  // Internal helper to create a reducing function, iterating left or right.
-  function createReduce(dir) {
-    // Wrap code that reassigns argument variables in a separate function than
-    // the one that accesses `arguments.length` to avoid a perf hit. (#1991)
-    var reducer = function(obj, iteratee, memo, initial) {
-      var _keys = !isArrayLike(obj) && keys(obj),
-          length = (_keys || obj).length,
-          index = dir > 0 ? 0 : length - 1;
-      if (!initial) {
-        memo = obj[_keys ? _keys[index] : index];
-        index += dir;
-      }
-      for (; index >= 0 && index < length; index += dir) {
-        var currentKey = _keys ? _keys[index] : index;
-        memo = iteratee(memo, obj[currentKey], currentKey, obj);
-      }
-      return memo;
-    };
-
-    return function(obj, iteratee, memo, context) {
-      var initial = arguments.length >= 3;
-      return reducer(obj, optimizeCb(iteratee, context, 4), memo, initial);
-    };
-  }
-
-  // **Reduce** builds up a single result from a list of values, aka `inject`,
-  // or `foldl`.
-  var reduce = createReduce(1);
-
-  // The right-associative version of reduce, also known as `foldr`.
-  var reduceRight = createReduce(-1);
-
-  // Return all the elements that pass a truth test.
-  function filter(obj, predicate, context) {
-    var results = [];
-    predicate = cb(predicate, context);
-    each(obj, function(value, index, list) {
-      if (predicate(value, index, list)) results.push(value);
-    });
-    return results;
-  }
-
-  // Return all the elements for which a truth test fails.
-  function reject(obj, predicate, context) {
-    return filter(obj, negate(cb(predicate)), context);
-  }
-
-  // Determine whether all of the elements pass a truth test.
-  function every(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length;
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      if (!predicate(obj[currentKey], currentKey, obj)) return false;
-    }
-    return true;
-  }
-
-  // Determine if at least one element in the object passes a truth test.
-  function some(obj, predicate, context) {
-    predicate = cb(predicate, context);
-    var _keys = !isArrayLike(obj) && keys(obj),
-        length = (_keys || obj).length;
-    for (var index = 0; index < length; index++) {
-      var currentKey = _keys ? _keys[index] : index;
-      if (predicate(obj[currentKey], currentKey, obj)) return true;
-    }
-    return false;
-  }
-
-  // Determine if the array or object contains a given item (using `===`).
-  function contains(obj, item, fromIndex, guard) {
-    if (!isArrayLike(obj)) obj = values(obj);
-    if (typeof fromIndex != 'number' || guard) fromIndex = 0;
-    return indexOf(obj, item, fromIndex) >= 0;
-  }
-
-  // Invoke a method (with arguments) on every item in a collection.
-  var invoke = restArguments(function(obj, path, args) {
-    var contextPath, func;
-    if (isFunction$1(path)) {
-      func = path;
-    } else {
-      path = toPath(path);
-      contextPath = path.slice(0, -1);
-      path = path[path.length - 1];
-    }
-    return map(obj, function(context) {
-      var method = func;
-      if (!method) {
-        if (contextPath && contextPath.length) {
-          context = deepGet(context, contextPath);
-        }
-        if (context == null) return void 0;
-        method = context[path];
-      }
-      return method == null ? method : method.apply(context, args);
-    });
-  });
-
-  // Convenience version of a common use case of `_.map`: fetching a property.
-  function pluck(obj, key) {
-    return map(obj, property(key));
-  }
-
-  // Convenience version of a common use case of `_.filter`: selecting only
-  // objects containing specific `key:value` pairs.
-  function where(obj, attrs) {
-    return filter(obj, matcher(attrs));
-  }
-
-  // Return the maximum element (or element-based computation).
-  function max(obj, iteratee, context) {
-    var result = -Infinity, lastComputed = -Infinity,
-        value, computed;
-    if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) {
-      obj = isArrayLike(obj) ? obj : values(obj);
-      for (var i = 0, length = obj.length; i < length; i++) {
-        value = obj[i];
-        if (value != null && value > result) {
-          result = value;
-        }
-      }
-    } else {
-      iteratee = cb(iteratee, context);
-      each(obj, function(v, index, list) {
-        computed = iteratee(v, index, list);
-        if (computed > lastComputed || computed === -Infinity && result === -Infinity) {
-          result = v;
-          lastComputed = computed;
-        }
-      });
-    }
-    return result;
-  }
-
-  // Return the minimum element (or element-based computation).
-  function min(obj, iteratee, context) {
-    var result = Infinity, lastComputed = Infinity,
-        value, computed;
-    if (iteratee == null || typeof iteratee == 'number' && typeof obj[0] != 'object' && obj != null) {
-      obj = isArrayLike(obj) ? obj : values(obj);
-      for (var i = 0, length = obj.length; i < length; i++) {
-        value = obj[i];
-        if (value != null && value < result) {
-          result = value;
-        }
-      }
-    } else {
-      iteratee = cb(iteratee, context);
-      each(obj, function(v, index, list) {
-        computed = iteratee(v, index, list);
-        if (computed < lastComputed || computed === Infinity && result === Infinity) {
-          result = v;
-          lastComputed = computed;
-        }
-      });
-    }
-    return result;
-  }
-
-  // Sample **n** random values from a collection using the modern version of the
-  // [Fisher-Yates shuffle](https://en.wikipedia.org/wiki/Fisher–Yates_shuffle).
-  // If **n** is not specified, returns a single random element.
-  // The internal `guard` argument allows it to work with `_.map`.
-  function sample(obj, n, guard) {
-    if (n == null || guard) {
-      if (!isArrayLike(obj)) obj = values(obj);
-      return obj[random(obj.length - 1)];
-    }
-    var sample = isArrayLike(obj) ? clone(obj) : values(obj);
-    var length = getLength(sample);
-    n = Math.max(Math.min(n, length), 0);
-    var last = length - 1;
-    for (var index = 0; index < n; index++) {
-      var rand = random(index, last);
-      var temp = sample[index];
-      sample[index] = sample[rand];
-      sample[rand] = temp;
-    }
-    return sample.slice(0, n);
-  }
-
-  // Shuffle a collection.
-  function shuffle(obj) {
-    return sample(obj, Infinity);
-  }
-
-  // Sort the object's values by a criterion produced by an iteratee.
-  function sortBy(obj, iteratee, context) {
-    var index = 0;
-    iteratee = cb(iteratee, context);
-    return pluck(map(obj, function(value, key, list) {
-      return {
-        value: value,
-        index: index++,
-        criteria: iteratee(value, key, list)
-      };
-    }).sort(function(left, right) {
-      var a = left.criteria;
-      var b = right.criteria;
-      if (a !== b) {
-        if (a > b || a === void 0) return 1;
-        if (a < b || b === void 0) return -1;
-      }
-      return left.index - right.index;
-    }), 'value');
-  }
-
-  // An internal function used for aggregate "group by" operations.
-  function group(behavior, partition) {
-    return function(obj, iteratee, context) {
-      var result = partition ? [[], []] : {};
-      iteratee = cb(iteratee, context);
-      each(obj, function(value, index) {
-        var key = iteratee(value, index, obj);
-        behavior(result, value, key);
-      });
-      return result;
-    };
-  }
-
-  // Groups the object's values by a criterion. Pass either a string attribute
-  // to group by, or a function that returns the criterion.
-  var groupBy = group(function(result, value, key) {
-    if (has$1(result, key)) result[key].push(value); else result[key] = [value];
-  });
-
-  // Indexes the object's values by a criterion, similar to `_.groupBy`, but for
-  // when you know that your index values will be unique.
-  var indexBy = group(function(result, value, key) {
-    result[key] = value;
-  });
-
-  // Counts instances of an object that group by a certain criterion. Pass
-  // either a string attribute to count by, or a function that returns the
-  // criterion.
-  var countBy = group(function(result, value, key) {
-    if (has$1(result, key)) result[key]++; else result[key] = 1;
-  });
-
-  // Split a collection into two arrays: one whose elements all pass the given
-  // truth test, and one whose elements all do not pass the truth test.
-  var partition = group(function(result, value, pass) {
-    result[pass ? 0 : 1].push(value);
-  }, true);
-
-  // Safely create a real, live array from anything iterable.
-  var reStrSymbol = /[^\ud800-\udfff]|[\ud800-\udbff][\udc00-\udfff]|[\ud800-\udfff]/g;
-  function toArray(obj) {
-    if (!obj) return [];
-    if (isArray(obj)) return slice.call(obj);
-    if (isString(obj)) {
-      // Keep surrogate pair characters together.
-      return obj.match(reStrSymbol);
-    }
-    if (isArrayLike(obj)) return map(obj, identity);
-    return values(obj);
-  }
-
-  // Return the number of elements in a collection.
-  function size(obj) {
-    if (obj == null) return 0;
-    return isArrayLike(obj) ? obj.length : keys(obj).length;
-  }
-
-  // Internal `_.pick` helper function to determine whether `key` is an enumerable
-  // property name of `obj`.
-  function keyInObj(value, key, obj) {
-    return key in obj;
-  }
-
-  // Return a copy of the object only containing the allowed properties.
-  var pick = restArguments(function(obj, keys) {
-    var result = {}, iteratee = keys[0];
-    if (obj == null) return result;
-    if (isFunction$1(iteratee)) {
-      if (keys.length > 1) iteratee = optimizeCb(iteratee, keys[1]);
-      keys = allKeys(obj);
-    } else {
-      iteratee = keyInObj;
-      keys = flatten$1(keys, false, false);
-      obj = Object(obj);
-    }
-    for (var i = 0, length = keys.length; i < length; i++) {
-      var key = keys[i];
-      var value = obj[key];
-      if (iteratee(value, key, obj)) result[key] = value;
-    }
-    return result;
-  });
-
-  // Return a copy of the object without the disallowed properties.
-  var omit = restArguments(function(obj, keys) {
-    var iteratee = keys[0], context;
-    if (isFunction$1(iteratee)) {
-      iteratee = negate(iteratee);
-      if (keys.length > 1) context = keys[1];
-    } else {
-      keys = map(flatten$1(keys, false, false), String);
-      iteratee = function(value, key) {
-        return !contains(keys, key);
-      };
-    }
-    return pick(obj, iteratee, context);
-  });
-
-  // Returns everything but the last entry of the array. Especially useful on
-  // the arguments object. Passing **n** will return all the values in
-  // the array, excluding the last N.
-  function initial(array, n, guard) {
-    return slice.call(array, 0, Math.max(0, array.length - (n == null || guard ? 1 : n)));
-  }
-
-  // Get the first element of an array. Passing **n** will return the first N
-  // values in the array. The **guard** check allows it to work with `_.map`.
-  function first(array, n, guard) {
-    if (array == null || array.length < 1) return n == null || guard ? void 0 : [];
-    if (n == null || guard) return array[0];
-    return initial(array, array.length - n);
-  }
-
-  // Returns everything but the first entry of the `array`. Especially useful on
-  // the `arguments` object. Passing an **n** will return the rest N values in the
-  // `array`.
-  function rest(array, n, guard) {
-    return slice.call(array, n == null || guard ? 1 : n);
-  }
-
-  // Get the last element of an array. Passing **n** will return the last N
-  // values in the array.
-  function last(array, n, guard) {
-    if (array == null || array.length < 1) return n == null || guard ? void 0 : [];
-    if (n == null || guard) return array[array.length - 1];
-    return rest(array, Math.max(0, array.length - n));
-  }
-
-  // Trim out all falsy values from an array.
-  function compact(array) {
-    return filter(array, Boolean);
-  }
-
-  // Flatten out an array, either recursively (by default), or up to `depth`.
-  // Passing `true` or `false` as `depth` means `1` or `Infinity`, respectively.
-  function flatten(array, depth) {
-    return flatten$1(array, depth, false);
-  }
-
-  // Take the difference between one array and a number of other arrays.
-  // Only the elements present in just the first array will remain.
-  var difference = restArguments(function(array, rest) {
-    rest = flatten$1(rest, true, true);
-    return filter(array, function(value){
-      return !contains(rest, value);
-    });
-  });
-
-  // Return a version of the array that does not contain the specified value(s).
-  var without = restArguments(function(array, otherArrays) {
-    return difference(array, otherArrays);
-  });
-
-  // Produce a duplicate-free version of the array. If the array has already
-  // been sorted, you have the option of using a faster algorithm.
-  // The faster algorithm will not work with an iteratee if the iteratee
-  // is not a one-to-one function, so providing an iteratee will disable
-  // the faster algorithm.
-  function uniq(array, isSorted, iteratee, context) {
-    if (!isBoolean(isSorted)) {
-      context = iteratee;
-      iteratee = isSorted;
-      isSorted = false;
-    }
-    if (iteratee != null) iteratee = cb(iteratee, context);
-    var result = [];
-    var seen = [];
-    for (var i = 0, length = getLength(array); i < length; i++) {
-      var value = array[i],
-          computed = iteratee ? iteratee(value, i, array) : value;
-      if (isSorted && !iteratee) {
-        if (!i || seen !== computed) result.push(value);
-        seen = computed;
-      } else if (iteratee) {
-        if (!contains(seen, computed)) {
-          seen.push(computed);
-          result.push(value);
-        }
-      } else if (!contains(result, value)) {
-        result.push(value);
-      }
-    }
-    return result;
-  }
-
-  // Produce an array that contains the union: each distinct element from all of
-  // the passed-in arrays.
-  var union = restArguments(function(arrays) {
-    return uniq(flatten$1(arrays, true, true));
-  });
-
-  // Produce an array that contains every item shared between all the
-  // passed-in arrays.
-  function intersection(array) {
-    var result = [];
-    var argsLength = arguments.length;
-    for (var i = 0, length = getLength(array); i < length; i++) {
-      var item = array[i];
-      if (contains(result, item)) continue;
-      var j;
-      for (j = 1; j < argsLength; j++) {
-        if (!contains(arguments[j], item)) break;
-      }
-      if (j === argsLength) result.push(item);
-    }
-    return result;
-  }
-
-  // Complement of zip. Unzip accepts an array of arrays and groups
-  // each array's elements on shared indices.
-  function unzip(array) {
-    var length = array && max(array, getLength).length || 0;
-    var result = Array(length);
-
-    for (var index = 0; index < length; index++) {
-      result[index] = pluck(array, index);
-    }
-    return result;
-  }
-
-  // Zip together multiple lists into a single array -- elements that share
-  // an index go together.
-  var zip = restArguments(unzip);
-
-  // Converts lists into objects. Pass either a single array of `[key, value]`
-  // pairs, or two parallel arrays of the same length -- one of keys, and one of
-  // the corresponding values. Passing by pairs is the reverse of `_.pairs`.
-  function object(list, values) {
-    var result = {};
-    for (var i = 0, length = getLength(list); i < length; i++) {
-      if (values) {
-        result[list[i]] = values[i];
-      } else {
-        result[list[i][0]] = list[i][1];
-      }
-    }
-    return result;
-  }
-
-  // Generate an integer Array containing an arithmetic progression. A port of
-  // the native Python `range()` function. See
-  // [the Python documentation](https://docs.python.org/library/functions.html#range).
-  function range(start, stop, step) {
-    if (stop == null) {
-      stop = start || 0;
-      start = 0;
-    }
-    if (!step) {
-      step = stop < start ? -1 : 1;
-    }
-
-    var length = Math.max(Math.ceil((stop - start) / step), 0);
-    var range = Array(length);
-
-    for (var idx = 0; idx < length; idx++, start += step) {
-      range[idx] = start;
-    }
-
-    return range;
-  }
-
-  // Chunk a single array into multiple arrays, each containing `count` or fewer
-  // items.
-  function chunk(array, count) {
-    if (count == null || count < 1) return [];
-    var result = [];
-    var i = 0, length = array.length;
-    while (i < length) {
-      result.push(slice.call(array, i, i += count));
-    }
-    return result;
-  }
-
-  // Helper function to continue chaining intermediate results.
-  function chainResult(instance, obj) {
-    return instance._chain ? _$1(obj).chain() : obj;
-  }
-
-  // Add your own custom functions to the Underscore object.
-  function mixin(obj) {
-    each(functions(obj), function(name) {
-      var func = _$1[name] = obj[name];
-      _$1.prototype[name] = function() {
-        var args = [this._wrapped];
-        push.apply(args, arguments);
-        return chainResult(this, func.apply(_$1, args));
-      };
-    });
-    return _$1;
-  }
-
-  // Add all mutator `Array` functions to the wrapper.
-  each(['pop', 'push', 'reverse', 'shift', 'sort', 'splice', 'unshift'], function(name) {
-    var method = ArrayProto[name];
-    _$1.prototype[name] = function() {
-      var obj = this._wrapped;
-      if (obj != null) {
-        method.apply(obj, arguments);
-        if ((name === 'shift' || name === 'splice') && obj.length === 0) {
-          delete obj[0];
-        }
-      }
-      return chainResult(this, obj);
-    };
-  });
-
-  // Add all accessor `Array` functions to the wrapper.
-  each(['concat', 'join', 'slice'], function(name) {
-    var method = ArrayProto[name];
-    _$1.prototype[name] = function() {
-      var obj = this._wrapped;
-      if (obj != null) obj = method.apply(obj, arguments);
-      return chainResult(this, obj);
-    };
-  });
-
-  // Named Exports
-
-  var allExports = {
-    __proto__: null,
-    VERSION: VERSION,
-    restArguments: restArguments,
-    isObject: isObject,
-    isNull: isNull,
-    isUndefined: isUndefined,
-    isBoolean: isBoolean,
-    isElement: isElement,
-    isString: isString,
-    isNumber: isNumber,
-    isDate: isDate,
-    isRegExp: isRegExp,
-    isError: isError,
-    isSymbol: isSymbol,
-    isArrayBuffer: isArrayBuffer,
-    isDataView: isDataView$1,
-    isArray: isArray,
-    isFunction: isFunction$1,
-    isArguments: isArguments$1,
-    isFinite: isFinite$1,
-    isNaN: isNaN$1,
-    isTypedArray: isTypedArray$1,
-    isEmpty: isEmpty,
-    isMatch: isMatch,
-    isEqual: isEqual,
-    isMap: isMap,
-    isWeakMap: isWeakMap,
-    isSet: isSet,
-    isWeakSet: isWeakSet,
-    keys: keys,
-    allKeys: allKeys,
-    values: values,
-    pairs: pairs,
-    invert: invert,
-    functions: functions,
-    methods: functions,
-    extend: extend,
-    extendOwn: extendOwn,
-    assign: extendOwn,
-    defaults: defaults,
-    create: create,
-    clone: clone,
-    tap: tap,
-    get: get,
-    has: has,
-    mapObject: mapObject,
-    identity: identity,
-    constant: constant,
-    noop: noop,
-    toPath: toPath$1,
-    property: property,
-    propertyOf: propertyOf,
-    matcher: matcher,
-    matches: matcher,
-    times: times,
-    random: random,
-    now: now,
-    escape: _escape,
-    unescape: _unescape,
-    templateSettings: templateSettings,
-    template: template,
-    result: result,
-    uniqueId: uniqueId,
-    chain: chain,
-    iteratee: iteratee,
-    partial: partial,
-    bind: bind,
-    bindAll: bindAll,
-    memoize: memoize,
-    delay: delay,
-    defer: defer,
-    throttle: throttle,
-    debounce: debounce,
-    wrap: wrap,
-    negate: negate,
-    compose: compose,
-    after: after,
-    before: before,
-    once: once,
-    findKey: findKey,
-    findIndex: findIndex,
-    findLastIndex: findLastIndex,
-    sortedIndex: sortedIndex,
-    indexOf: indexOf,
-    lastIndexOf: lastIndexOf,
-    find: find,
-    detect: find,
-    findWhere: findWhere,
-    each: each,
-    forEach: each,
-    map: map,
-    collect: map,
-    reduce: reduce,
-    foldl: reduce,
-    inject: reduce,
-    reduceRight: reduceRight,
-    foldr: reduceRight,
-    filter: filter,
-    select: filter,
-    reject: reject,
-    every: every,
-    all: every,
-    some: some,
-    any: some,
-    contains: contains,
-    includes: contains,
-    include: contains,
-    invoke: invoke,
-    pluck: pluck,
-    where: where,
-    max: max,
-    min: min,
-    shuffle: shuffle,
-    sample: sample,
-    sortBy: sortBy,
-    groupBy: groupBy,
-    indexBy: indexBy,
-    countBy: countBy,
-    partition: partition,
-    toArray: toArray,
-    size: size,
-    pick: pick,
-    omit: omit,
-    first: first,
-    head: first,
-    take: first,
-    initial: initial,
-    last: last,
-    rest: rest,
-    tail: rest,
-    drop: rest,
-    compact: compact,
-    flatten: flatten,
-    without: without,
-    uniq: uniq,
-    unique: uniq,
-    union: union,
-    intersection: intersection,
-    difference: difference,
-    unzip: unzip,
-    transpose: unzip,
-    zip: zip,
-    object: object,
-    range: range,
-    chunk: chunk,
-    mixin: mixin,
-    'default': _$1
-  };
-
-  // Default Export
-
-  // Add all of the Underscore functions to the wrapper object.
-  var _ = mixin(allExports);
-  // Legacy Node.js API.
-  _._ = _;
-
-  return _;
-
-})));
-//# sourceMappingURL=underscore-umd.js.map
diff --git a/_static/underscore.js b/_static/underscore.js
deleted file mode 100644
index cf177d428..000000000
--- a/_static/underscore.js
+++ /dev/null
@@ -1,6 +0,0 @@
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-//     https://underscorejs.org
-//     (c) 2009-2021 Jeremy Ashkenas, Julian Gonggrijp, and DocumentCloud and Investigative Reporters & Editors
-//     Underscore may be freely distributed under the MIT license.
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\ No newline at end of file
diff --git a/align.html b/align.html
index 2047ce7ec..1151a9768 100644
--- a/align.html
+++ b/align.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
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     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Alignments &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Alignments &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
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+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
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@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,7 +37,7 @@
           <div class="body" role="main">
             
   <section id="alignments">
-<h1>Alignments<a class="headerlink" href="#alignments" title="Permalink to this headline">¶</a></h1>
+<h1>Alignments<a class="headerlink" href="#alignments" title="Link to this heading">¶</a></h1>
 <p>The <code class="docutils literal notranslate"><span class="pre">cortex.align</span></code> module.</p>
 <p>Aligning functional data, or finding where the brain is.</p>
 <p>To correctly visualise cortical activity, we need to know where cortical surface is in the functional data.
@@ -49,7 +48,7 @@ <h1>Alignments<a class="headerlink" href="#alignments" title="Permalink to this
 In most cases, this would be the temporal mean image. (You can also use something else like the first image, or whatever.)
 Let’s say the subject is <code class="docutils literal notranslate"><span class="pre">S1</span></code>, you are making a transform named <code class="docutils literal notranslate"><span class="pre">example-transform</span></code>, and the reference image is <code class="docutils literal notranslate"><span class="pre">ref-image.nii.gz</span></code>.</p>
 <section id="automatic-alignment">
-<h2>Automatic Alignment<a class="headerlink" href="#automatic-alignment" title="Permalink to this headline">¶</a></h2>
+<h2>Automatic Alignment<a class="headerlink" href="#automatic-alignment" title="Link to this heading">¶</a></h2>
 <p>Pycortex can automatically align the brain using FSL.
 This step creates a new transform folder in your pycortex store, and should be the first step for any alignment.</p>
 <p>To have pycortex automagically align the brain, simply call</p>
@@ -72,7 +71,7 @@ <h2>Automatic Alignment<a class="headerlink" href="#automatic-alignment" title="
 Setting <code class="docutils literal notranslate"><span class="pre">noclean</span></code> to <code class="docutils literal notranslate"><span class="pre">false</span></code> will keep those files there, which is useful for debugging.</p>
 </section>
 <section id="automatically-tweaking-alignments">
-<h2>Automatically Tweaking Alignments<a class="headerlink" href="#automatically-tweaking-alignments" title="Permalink to this headline">¶</a></h2>
+<h2>Automatically Tweaking Alignments<a class="headerlink" href="#automatically-tweaking-alignments" title="Link to this heading">¶</a></h2>
 <p>In theory, a pre-existing alignment can be tweaked automatically.
 Like the automatic alignment, this is done via FSL.
 However, in practice, the search range is too big to be practically useful, and tweaking should be done using manual alignment instead.</p>
@@ -81,7 +80,7 @@ <h2>Automatically Tweaking Alignments<a class="headerlink" href="#automatically-
 </div>
 </section>
 <section id="manual-alignment">
-<h2>Manual Alignment<a class="headerlink" href="#manual-alignment" title="Permalink to this headline">¶</a></h2>
+<h2>Manual Alignment<a class="headerlink" href="#manual-alignment" title="Link to this heading">¶</a></h2>
 <div class="admonition note">
 <p class="admonition-title">Note</p>
 <p>Currently the manual aligner only works on Ubuntu 14.04. The manual
@@ -98,50 +97,62 @@ <h2>Manual Alignment<a class="headerlink" href="#manual-alignment" title="Permal
 </div>
 <p>Note: if you are fixing a transform you had previous used for things, you will need to delete the mask files in the transform’s folder.</p>
 <p>You will see a window like this pop up:</p>
-<a class="reference internal image-reference" href="_images/snapshot1.png"><img alt="_images/snapshot1.png" src="_images/snapshot1.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/snapshot1.png"><img alt="_images/snapshot1.png" src="_images/snapshot1.png" style="width: 600px;" />
+</a>
 <p>There’s weird gray blobs - click anywhere to get rid of them.</p>
-<a class="reference internal image-reference" href="_images/snapshot2.png"><img alt="_images/snapshot2.png" src="_images/snapshot2.png" style="width: 600px;" /></a>
-<p>Here you see 4 different views, showing the saggital, coronal, and transverse slices, and also the three slices in 3D.
+<a class="reference internal image-reference" href="_images/snapshot2.png"><img alt="_images/snapshot2.png" src="_images/snapshot2.png" style="width: 600px;" />
+</a>
+<p>Here you see 4 different views, showing the sagittal, coronal, and transverse slices, and also the three slices in 3D.
 The background image is the reference image, and the mesh that you see is the surface that you will be aligning.
 You’ll be moving the mesh until it’s aligned as much as possible with the reference.</p>
 <p>To make things easier to see, the aligner offers different color options.</p>
 <section id="changing-the-views">
-<h3>Changing the views<a class="headerlink" href="#changing-the-views" title="Permalink to this headline">¶</a></h3>
+<h3>Changing the views<a class="headerlink" href="#changing-the-views" title="Link to this heading">¶</a></h3>
 <p>You can change the color scale for the images with the color map option:</p>
-<a class="reference internal image-reference" href="_images/colormap.png"><img alt="_images/colormap.png" src="_images/colormap.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/colormap.png"><img alt="_images/colormap.png" src="_images/colormap.png" style="width: 600px;" />
+</a>
 <p>Here, we’ve set it to the red-blue color map.</p>
-<a class="reference internal image-reference" href="_images/snapshot4.png"><img alt="_images/snapshot4.png" src="_images/snapshot4.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/snapshot4.png"><img alt="_images/snapshot4.png" src="_images/snapshot4.png" style="width: 600px;" />
+</a>
 <p><code class="docutils literal notranslate"><span class="pre">Fliplut</span></code> can be used to reverse the color map.</p>
-<a class="reference internal image-reference" href="_images/flipcolor.png"><img alt="_images/flipcolor.png" src="_images/flipcolor.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/flipcolor.png"><img alt="_images/flipcolor.png" src="_images/flipcolor.png" style="width: 600px;" />
+</a>
 <p>You can also use the <code class="docutils literal notranslate"><span class="pre">contrast</span></code> and <code class="docutils literal notranslate"><span class="pre">brightness</span></code> sliders to adjust the colors.</p>
-<a class="reference internal image-reference" href="_images/contrast.png"><img alt="_images/contrast.png" src="_images/contrast.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/contrast.png"><img alt="_images/contrast.png" src="_images/contrast.png" style="width: 600px;" />
+</a>
 <p>The <code class="docutils literal notranslate"><span class="pre">Outline</span> <span class="pre">color</span></code> and <code class="docutils literal notranslate"><span class="pre">Outline</span> <span class="pre">rep</span></code> can be used to change the surface color, and the surface from a mesh (the default), to points only, to a solid surface.
-Also, the sliders can be used to chane line and point weights.
+Also, the sliders can be used to change line and point weights.
 Here, we changed it to a green points only representation, with smaller points.</p>
-<a class="reference internal image-reference" href="_images/surface.png"><img alt="_images/surface.png" src="_images/surface.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/surface.png"><img alt="_images/surface.png" src="_images/surface.png" style="width: 600px;" />
+</a>
 <p>You will notice two black lines in each view. You can click anywhere in a view to select a different voxel.
 Selecting another voxel will update all the other views to show the slices that particular voxel belongs to.</p>
-<a class="reference internal image-reference" href="_images/lines1.png"><img alt="_images/lines1.png" src="_images/lines1.png" style="width: 600px;" /></a>
-<a class="reference internal image-reference" href="_images/snapshot13.png"><img alt="_images/snapshot13.png" src="_images/snapshot13.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/lines1.png"><img alt="_images/lines1.png" src="_images/lines1.png" style="width: 600px;" />
+</a>
+<a class="reference internal image-reference" href="_images/snapshot13.png"><img alt="_images/snapshot13.png" src="_images/snapshot13.png" style="width: 600px;" />
+</a>
 <p>Use these views to change the slices of the brain that you’re looking at, to line things up.</p>
 </section>
 <section id="manually-aligning-the-brain">
-<h3>Manually aligning the brain<a class="headerlink" href="#manually-aligning-the-brain" title="Permalink to this headline">¶</a></h3>
+<h3>Manually aligning the brain<a class="headerlink" href="#manually-aligning-the-brain" title="Link to this heading">¶</a></h3>
 <p>On each view, there is a ball surrounded by a ring. These can be used to adjust the brain using the mouse.
 Click and drag the center ball to translate in each view, and use the ball on the ring to rotate and scale.
 It will take a few seconds for the aligner to update the mesh position.</p>
-<a class="reference internal image-reference" href="_images/adjring.png"><img alt="_images/adjring.png" src="_images/adjring.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/adjring.png"><img alt="_images/adjring.png" src="_images/adjring.png" style="width: 600px;" />
+</a>
 <p><strong>Note</strong>: you should not use the ring to make adjustments. There is no way to fix the scaling, and the ring will screw the scaling up.</p>
 <p>You can also use the keyboard to make adjustments.
 Holding down the shift key allows you to make fine adjustments.
 The aligner will apply the transformation in whatever view currently under your mouse cursor.</p>
-<a class="reference internal image-reference" href="_images/key-controls.png"><img alt="_images/key-controls.png" src="_images/key-controls.png" style="width: 663.5px; height: 806.5px;" /></a>
+<a class="reference internal image-reference" href="_images/key-controls.png"><img alt="_images/key-controls.png" src="_images/key-controls.png" style="width: 663.5px; height: 806.5px;" />
+</a>
 <p><strong>Note</strong>: you shouldn’t touch the keys outlined in red. There is no reason to stretch the brain.</p>
 <p>To save the alignment, just click the <code class="docutils literal notranslate"><span class="pre">Save</span> <span class="pre">Transform</span></code> button and close the window.</p>
-<a class="reference internal image-reference" href="_images/save.png"><img alt="_images/save.png" src="_images/save.png" style="width: 600px;" /></a>
+<a class="reference internal image-reference" href="_images/save.png"><img alt="_images/save.png" src="_images/save.png" style="width: 600px;" />
+</a>
 </section>
 <section id="tips-for-aligning-the-brain">
-<h3>Tips for aligning the brain<a class="headerlink" href="#tips-for-aligning-the-brain" title="Permalink to this headline">¶</a></h3>
+<h3>Tips for aligning the brain<a class="headerlink" href="#tips-for-aligning-the-brain" title="Link to this heading">¶</a></h3>
 <ul class="simple">
 <li><p>Holding down the shift key while using the keyboard controls will let you move the brain in fine-tuned, smaller increments.</p></li>
 <li><p>The really deep sulci work great as landmarks to align stuff up.</p></li>
@@ -206,7 +217,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -214,8 +225,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -229,11 +240,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/align.rst.txt"
diff --git a/api_reference_flat.html b/api_reference_flat.html
index e25a7ccc9..8506bc68e 100644
--- a/api_reference_flat.html
+++ b/api_reference_flat.html
@@ -1,30 +1,29 @@
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     <link rel="index" title="Index" href="genindex.html" />
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     <link rel="prev" title="Create a 3D WebGL Viewer with Multiple Datasets" href="auto_examples/webgl/multiple_datasets.html" />
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -37,9 +36,9 @@
           <div class="body" role="main">
             
   <section id="python-api-reference">
-<span id="api-reference"></span><h1>Python API Reference<a class="headerlink" href="#python-api-reference" title="Permalink to this headline">¶</a></h1>
+<span id="api-reference"></span><h1>Python API Reference<a class="headerlink" href="#python-api-reference" title="Link to this heading">¶</a></h1>
 <p>These are the classes and functions in pycortex.</p>
-<div class="contents local topic" id="contents">
+<nav class="contents local" id="contents">
 <ul class="simple">
 <li><p><a class="reference internal" href="#most-commonly-used-modules" id="id1">Most commonly used modules</a></p>
 <ul>
@@ -65,16 +64,12 @@
 </ul>
 </li>
 </ul>
-</div>
+</nav>
 <section id="most-commonly-used-modules">
-<h2><a class="toc-backref" href="#id1">Most commonly used modules</a><a class="headerlink" href="#most-commonly-used-modules" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id1" role="doc-backlink">Most commonly used modules</a><a class="headerlink" href="#most-commonly-used-modules" title="Link to this heading">¶</a></h2>
 <section id="module-cortex.quickflat">
-<span id="quickflat"></span><h3><a class="toc-backref" href="#id2">quickflat</a><a class="headerlink" href="#module-cortex.quickflat" title="Permalink to this headline">¶</a></h3>
+<span id="quickflat"></span><h3><a class="toc-backref" href="#id2" role="doc-backlink">quickflat</a><a class="headerlink" href="#module-cortex.quickflat" title="Link to this heading">¶</a></h3>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.quickflat.make_figure.html#cortex.quickflat.make_figure" title="cortex.quickflat.make_figure"><code class="xref py py-obj docutils literal notranslate"><span class="pre">make_figure</span></code></a>(braindata[, recache, pixelwise, ...])</p></td>
 <td><p>Show a Volume or Vertex on a flatmap with matplotlib.</p></td>
@@ -89,31 +84,23 @@ <h2><a class="toc-backref" href="#id1">Most commonly used modules</a><a class="h
 </table>
 </section>
 <section id="module-cortex.webgl">
-<span id="webgl"></span><h3><a class="toc-backref" href="#id3">webgl</a><a class="headerlink" href="#module-cortex.webgl" title="Permalink to this headline">¶</a></h3>
+<span id="webgl"></span><h3><a class="toc-backref" href="#id3" role="doc-backlink">webgl</a><a class="headerlink" href="#module-cortex.webgl" title="Link to this heading">¶</a></h3>
 <p>Makes an interactive viewer for viewing data in a browser</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.webgl.show.html#cortex.webgl.show" title="cortex.webgl.show"><code class="xref py py-obj docutils literal notranslate"><span class="pre">show</span></code></a>(data[, types, recache, cmap, layout, ...])</p></td>
 <td><p>Creates a webGL MRI viewer that is dynamically served by a tornado server running inside the current python process.</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="generated/cortex.webgl.make_static.html#cortex.webgl.make_static" title="cortex.webgl.make_static"><code class="xref py py-obj docutils literal notranslate"><span class="pre">make_static</span></code></a>(outpath, data[, types, recache, ...])</p></td>
-<td><p>Creates a static webGL MRI viewer in your filesystem so that it can easily be posted publically for sharing or just saved for later viewing.</p></td>
+<td><p>Creates a static webGL MRI viewer in your filesystem so that it can easily be posted publicly for sharing or just saved for later viewing.</p></td>
 </tr>
 </tbody>
 </table>
 </section>
 <section id="module-cortex.dataset">
-<span id="dataset"></span><h3><a class="toc-backref" href="#id4">dataset</a><a class="headerlink" href="#module-cortex.dataset" title="Permalink to this headline">¶</a></h3>
+<span id="dataset"></span><h3><a class="toc-backref" href="#id4" role="doc-backlink">dataset</a><a class="headerlink" href="#module-cortex.dataset" title="Link to this heading">¶</a></h3>
 <p>Contains classes for representing brain data in either volumetric or vertex (surface-based) formats for visualization.</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.dataset.Volume.html#cortex.dataset.Volume" title="cortex.dataset.Volume"><code class="xref py py-obj docutils literal notranslate"><span class="pre">Volume</span></code></a>(data, subject, xfmname[, mask, cmap, ...])</p></td>
 <td><p>Encapsulates a 3D volume or 4D volumetric movie.</p></td>
@@ -141,21 +128,17 @@ <h2><a class="toc-backref" href="#id1">Most commonly used modules</a><a class="h
 </section>
 </section>
 <section id="all-the-other-modules">
-<h2><a class="toc-backref" href="#id5">All the other modules</a><a class="headerlink" href="#all-the-other-modules" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id5" role="doc-backlink">All the other modules</a><a class="headerlink" href="#all-the-other-modules" title="Link to this heading">¶</a></h2>
 <section id="module-cortex.align">
-<span id="align"></span><h3><a class="toc-backref" href="#id6">align</a><a class="headerlink" href="#module-cortex.align" title="Permalink to this headline">¶</a></h3>
+<span id="align"></span><h3><a class="toc-backref" href="#id6" role="doc-backlink">align</a><a class="headerlink" href="#module-cortex.align" title="Link to this heading">¶</a></h3>
 <p>Contains functions for making alignments between functional data and the surface, or, finding where the brain is.</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.align.manual.html#cortex.align.manual" title="cortex.align.manual"><code class="xref py py-obj docutils literal notranslate"><span class="pre">manual</span></code></a>(subject, xfmname[, output_name, ...])</p></td>
 <td><p>Open Freesurfer FreeView GUI for manually aligning/adjusting a functional volume to the cortical surface for <cite>subject</cite>.</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="generated/cortex.align.automatic.html#cortex.align.automatic" title="cortex.align.automatic"><code class="xref py py-obj docutils literal notranslate"><span class="pre">automatic</span></code></a>(subject, xfmname, reference[, ...])</p></td>
-<td><p>Create an automatic alignment using the FLIRT boundary-based alignment (BBR) from FSL.</p></td>
+<td><p>Perform automatic alignment using Freesurfer's boundary-based registration.</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.align.autotweak.html#cortex.align.autotweak" title="cortex.align.autotweak"><code class="xref py py-obj docutils literal notranslate"><span class="pre">autotweak</span></code></a>(subject, xfmname)</p></td>
 <td><p>Tweak an alignment using the FLIRT boundary-based alignment (BBR) from FSL.</p></td>
@@ -164,13 +147,9 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.anat">
-<span id="anat"></span><h3><a class="toc-backref" href="#id7">anat</a><a class="headerlink" href="#module-cortex.anat" title="Permalink to this headline">¶</a></h3>
+<span id="anat"></span><h3><a class="toc-backref" href="#id7" role="doc-backlink">anat</a><a class="headerlink" href="#module-cortex.anat" title="Link to this heading">¶</a></h3>
 <p>Contains functions for making a whitematter mask</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.anat.brainmask.html#cortex.anat.brainmask" title="cortex.anat.brainmask"><code class="xref py py-obj docutils literal notranslate"><span class="pre">brainmask</span></code></a>(outfile, subject)</p></td>
 <td><p></p></td>
@@ -185,13 +164,9 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.database">
-<span id="database"></span><h3><a class="toc-backref" href="#id8">database</a><a class="headerlink" href="#module-cortex.database" title="Permalink to this headline">¶</a></h3>
+<span id="database"></span><h3><a class="toc-backref" href="#id8" role="doc-backlink">database</a><a class="headerlink" href="#module-cortex.database" title="Link to this heading">¶</a></h3>
 <p>Contains a singleton object <cite>db</cite> of type <cite>Database</cite> which allows easy access to surface files, anatomical images, and transforms that are stored in the pycortex filestore.</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.database.Database.html#cortex.database.Database" title="cortex.database.Database"><code class="xref py py-obj docutils literal notranslate"><span class="pre">Database</span></code></a>()</p></td>
 <td><p>Surface database</p></td>
@@ -200,16 +175,12 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.freesurfer">
-<span id="freesurfer"></span><h3><a class="toc-backref" href="#id9">freesurfer</a><a class="headerlink" href="#module-cortex.freesurfer" title="Permalink to this headline">¶</a></h3>
+<span id="freesurfer"></span><h3><a class="toc-backref" href="#id9" role="doc-backlink">freesurfer</a><a class="headerlink" href="#module-cortex.freesurfer" title="Link to this heading">¶</a></h3>
 <p>Contains functions for interfacing with freesurfer</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.freesurfer.get_paths.html#cortex.freesurfer.get_paths" title="cortex.freesurfer.get_paths"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_paths</span></code></a>(fs_subject, hemi[, type, ...])</p></td>
-<td><p>Retrive paths for all surfaces for a subject processed by freesurfer</p></td>
+<td><p>Retrieve paths for all surfaces for a subject processed by freesurfer</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="generated/cortex.freesurfer.autorecon.html#cortex.freesurfer.autorecon" title="cortex.freesurfer.autorecon"><code class="xref py py-obj docutils literal notranslate"><span class="pre">autorecon</span></code></a>(fs_subject[, type, parallel, n_cores])</p></td>
 <td><p>Run Freesurfer's autorecon-all command for a given freesurfer subject</p></td>
@@ -217,7 +188,7 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.freesurfer.flatten.html#cortex.freesurfer.flatten" title="cortex.freesurfer.flatten"><code class="xref py py-obj docutils literal notranslate"><span class="pre">flatten</span></code></a>(fs_subject, hemi, patch[, ...])</p></td>
 <td><p>Perform flattening of a brain using freesurfer</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="generated/cortex.freesurfer.import_subj.html#cortex.freesurfer.import_subj" title="cortex.freesurfer.import_subj"><code class="xref py py-obj docutils literal notranslate"><span class="pre">import_subj</span></code></a>(fs_subject[, cx_subject, ...])</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="generated/cortex.freesurfer.import_subj.html#cortex.freesurfer.import_subj" title="cortex.freesurfer.import_subj"><code class="xref py py-obj docutils literal notranslate"><span class="pre">import_subj</span></code></a>(freesurfer_subject[, ...])</p></td>
 <td><p>Imports a subject from freesurfer</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.freesurfer.import_flat.html#cortex.freesurfer.import_flat" title="cortex.freesurfer.import_flat"><code class="xref py py-obj docutils literal notranslate"><span class="pre">import_flat</span></code></a>(fs_subject, patch[, hemis, ...])</p></td>
@@ -263,12 +234,8 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.mapper">
-<span id="mapper"></span><h3><a class="toc-backref" href="#id10">mapper</a><a class="headerlink" href="#module-cortex.mapper" title="Permalink to this headline">¶</a></h3>
+<span id="mapper"></span><h3><a class="toc-backref" href="#id10" role="doc-backlink">mapper</a><a class="headerlink" href="#module-cortex.mapper" title="Link to this heading">¶</a></h3>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.mapper.Mapper.html#cortex.mapper.Mapper" title="cortex.mapper.Mapper"><code class="xref py py-obj docutils literal notranslate"><span class="pre">Mapper</span></code></a>(left, right, shape, subject, xfmname)</p></td>
 <td><p>Maps data from epi volume onto surface using various projections</p></td>
@@ -280,14 +247,10 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.mni">
-<span id="mni"></span><h3><a class="toc-backref" href="#id11">mni</a><a class="headerlink" href="#module-cortex.mni" title="Permalink to this headline">¶</a></h3>
+<span id="mni"></span><h3><a class="toc-backref" href="#id11" role="doc-backlink">mni</a><a class="headerlink" href="#module-cortex.mni" title="Link to this heading">¶</a></h3>
 <p>Functions for finding MNI transforms for individual subjects and transforming
 functional data and surfaces to and from MNI space.</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.mni.compute_mni_transform.html#cortex.mni.compute_mni_transform" title="cortex.mni.compute_mni_transform"><code class="xref py py-obj docutils literal notranslate"><span class="pre">compute_mni_transform</span></code></a>(subject, xfm[, template])</p></td>
 <td><p>Compute transform from the space specified by <cite>xfm</cite> to MNI standard space.</p></td>
@@ -305,30 +268,22 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.polyutils">
-<span id="polyutils"></span><h3><a class="toc-backref" href="#id12">polyutils</a><a class="headerlink" href="#module-cortex.polyutils" title="Permalink to this headline">¶</a></h3>
+<span id="polyutils"></span><h3><a class="toc-backref" href="#id12" role="doc-backlink">polyutils</a><a class="headerlink" href="#module-cortex.polyutils" title="Link to this heading">¶</a></h3>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.polyutils.Surface.html#cortex.polyutils.Surface" title="cortex.polyutils.Surface"><code class="xref py py-obj docutils literal notranslate"><span class="pre">Surface</span></code></a>(pts, polys)</p></td>
 <td><p>Represents a single cortical hemisphere surface.</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="generated/cortex.polyutils.Distortion.html#cortex.polyutils.Distortion" title="cortex.polyutils.Distortion"><code class="xref py py-obj docutils literal notranslate"><span class="pre">Distortion</span></code></a>(flat, ref, polys)</p></td>
-<td><p>Used to compute distortion metrics between fiducial and another (e.g.</p></td>
+<td><p>Used to compute distortion metrics between fiducial and another (e.g. flat) surface.</p></td>
 </tr>
 </tbody>
 </table>
 </section>
 <section id="module-cortex.segment">
-<span id="segment"></span><h3><a class="toc-backref" href="#id13">segment</a><a class="headerlink" href="#module-cortex.segment" title="Permalink to this headline">¶</a></h3>
+<span id="segment"></span><h3><a class="toc-backref" href="#id13" role="doc-backlink">segment</a><a class="headerlink" href="#module-cortex.segment" title="Link to this heading">¶</a></h3>
 <p>Controls functions for segmentation of white/gray matter and other things in the brain.</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.segment.init_subject.html#cortex.segment.init_subject" title="cortex.segment.init_subject"><code class="xref py py-obj docutils literal notranslate"><span class="pre">init_subject</span></code></a>(subject, filenames[, ...])</p></td>
 <td><p>Run the first initial segmentation for a subject's anatomy (in Freesurfer).</p></td>
@@ -346,14 +301,10 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.surfinfo">
-<span id="surfinfo"></span><h3><a class="toc-backref" href="#id14">surfinfo</a><a class="headerlink" href="#module-cortex.surfinfo" title="Permalink to this headline">¶</a></h3>
+<span id="surfinfo"></span><h3><a class="toc-backref" href="#id14" role="doc-backlink">surfinfo</a><a class="headerlink" href="#module-cortex.surfinfo" title="Link to this heading">¶</a></h3>
 <p>Contains functions for computing various surface properties. Mostly wrappers
 for functions in <cite>polyutils.Surface</cite> and <cite>polyutils.Distortion</cite>.</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.surfinfo.curvature.html#cortex.surfinfo.curvature" title="cortex.surfinfo.curvature"><code class="xref py py-obj docutils literal notranslate"><span class="pre">curvature</span></code></a>(outfile, subject[, smooth])</p></td>
 <td><p>Compute smoothed mean curvature of the fiducial surface for the given  subject and save it to <cite>outfile</cite>.</p></td>
@@ -374,13 +325,9 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.utils">
-<span id="utils"></span><h3><a class="toc-backref" href="#id15">utils</a><a class="headerlink" href="#module-cortex.utils" title="Permalink to this headline">¶</a></h3>
+<span id="utils"></span><h3><a class="toc-backref" href="#id15" role="doc-backlink">utils</a><a class="headerlink" href="#module-cortex.utils" title="Link to this heading">¶</a></h3>
 <p>Contain utility functions</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.utils.add_roi.html#cortex.utils.add_roi" title="cortex.utils.add_roi"><code class="xref py py-obj docutils literal notranslate"><span class="pre">add_roi</span></code></a>(data[, name, open_inkscape, ...])</p></td>
 <td><p>Add new flatmap image to the ROI file for a subject.</p></td>
@@ -399,7 +346,7 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="generated/cortex.utils.get_ctmmap.html#cortex.utils.get_ctmmap" title="cortex.utils.get_ctmmap"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_ctmmap</span></code></a>(subject, **kwargs)</p></td>
 <td><p><dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><p></p></dd>
 </dl>
 </p></td>
@@ -430,7 +377,7 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.utils.vertex_to_voxel.html#cortex.utils.vertex_to_voxel" title="cortex.utils.vertex_to_voxel"><code class="xref py py-obj docutils literal notranslate"><span class="pre">vertex_to_voxel</span></code></a>(subject)</p></td>
 <td><p><dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><p></p></dd>
 </dl>
 </p></td>
@@ -439,13 +386,9 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.volume">
-<span id="volume"></span><h3><a class="toc-backref" href="#id16">volume</a><a class="headerlink" href="#module-cortex.volume" title="Permalink to this headline">¶</a></h3>
+<span id="volume"></span><h3><a class="toc-backref" href="#id16" role="doc-backlink">volume</a><a class="headerlink" href="#module-cortex.volume" title="Link to this heading">¶</a></h3>
 <p>Contains functions for working with volume data</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.volume.unmask.html#cortex.volume.unmask" title="cortex.volume.unmask"><code class="xref py py-obj docutils literal notranslate"><span class="pre">unmask</span></code></a>(mask, data)</p></td>
 <td><p>Unmask the data, assuming it's been masked.</p></td>
@@ -478,13 +421,9 @@ <h2><a class="toc-backref" href="#id5">All the other modules</a><a class="header
 </table>
 </section>
 <section id="module-cortex.xfm">
-<span id="xfm"></span><h3><a class="toc-backref" href="#id17">xfm</a><a class="headerlink" href="#module-cortex.xfm" title="Permalink to this headline">¶</a></h3>
+<span id="xfm"></span><h3><a class="toc-backref" href="#id17" role="doc-backlink">xfm</a><a class="headerlink" href="#module-cortex.xfm" title="Link to this heading">¶</a></h3>
 <p>Affine transformation class</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="generated/cortex.xfm.Transform.html#cortex.xfm.Transform" title="cortex.xfm.Transform"><code class="xref py py-obj docutils literal notranslate"><span class="pre">Transform</span></code></a>(xfm, reference)</p></td>
 <td><p>A standard affine transform.</p></td>
@@ -566,7 +505,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -574,8 +513,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -589,11 +528,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/api_reference_flat.rst.txt"
diff --git a/auto_examples/datasets/index.html b/auto_examples/datasets/index.html
new file mode 100644
index 000000000..1fad9ebcd
--- /dev/null
+++ b/auto_examples/datasets/index.html
@@ -0,0 +1,179 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+    <title>Datasets Examples &#8212; pycortex 1.2.8 documentation</title>
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
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+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="Dataset Arithmetic" href="plot_dataset_arithmetic.html" />
+    <link rel="prev" title="Example Gallery" href="../index.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
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+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="datasets-examples">
+<span id="sphx-glr-auto-examples-datasets"></span><h1>Datasets Examples<a class="headerlink" href="#datasets-examples" title="Link to this heading">¶</a></h1>
+<p>Examples demonstrating how to create, manipulate, plot datasets.</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><img alt="" src="../../_images/sphx_glr_plot_dataset_arithmetic_thumb.png" />
+<p><a class="reference internal" href="plot_dataset_arithmetic.html#sphx-glr-auto-examples-datasets-plot-dataset-arithmetic-py"><span class="std std-ref">Dataset Arithmetic</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Dataset Arithmetic</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="In order to move from Volume data to Vertex data, you start with data from voxels and then crea..."><img alt="" src="../../_images/sphx_glr_plot_volume_to_vertex_thumb.png" />
+<p><a class="reference internal" href="plot_volume_to_vertex.html#sphx-glr-auto-examples-datasets-plot-volume-to-vertex-py"><span class="std std-ref">Map from Volume to Vertex Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Map from Volume to Vertex Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><img alt="" src="../../_images/sphx_glr_plot_volume_thumb.png" />
+<p><a class="reference internal" href="plot_volume.html#sphx-glr-auto-examples-datasets-plot-volume-py"><span class="std std-ref">Plot Volume Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot Volume Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example vertex data onto an example subject, S1, onto a flatmap using quickflat. In ..."><img alt="" src="../../_images/sphx_glr_plot_vertex_thumb.png" />
+<p><a class="reference internal" href="plot_vertex.html#sphx-glr-auto-examples-datasets-plot-vertex-py"><span class="std std-ref">Plot Vertex Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot Vertex Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example 2D vertex data onto an example subject, S1, onto a flatmap using quickflat. ..."><img alt="" src="../../_images/sphx_glr_plot_vertex2D_thumb.png" />
+<p><a class="reference internal" href="plot_vertex2D.html#sphx-glr-auto-examples-datasets-plot-vertex2d-py"><span class="std std-ref">Plot 2D Vertex Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot 2D Vertex Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><img alt="" src="../../_images/sphx_glr_plot_volume2D_thumb.png" />
+<p><a class="reference internal" href="plot_volume2D.html#sphx-glr-auto-examples-datasets-plot-volume2d-py"><span class="std std-ref">Plot 2D Volume Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot 2D Volume Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example RGB vertex data onto an example subject, S1, onto a flatmap using quickflat...."><img alt="" src="../../_images/sphx_glr_plot_vertexRGB_thumb.png" />
+<p><a class="reference internal" href="plot_vertexRGB.html#sphx-glr-auto-examples-datasets-plot-vertexrgb-py"><span class="std std-ref">Plot RGB Vertex Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot RGB Vertex Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots an example RGB dataset onto an example subject, S1, onto a flatmap using quickflat. ..."><img alt="" src="../../_images/sphx_glr_plot_volumeRGB_thumb.png" />
+<p><a class="reference internal" href="plot_volumeRGB.html#sphx-glr-auto-examples-datasets-plot-volumergb-py"><span class="std std-ref">Plot RGB Volume Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot RGB Volume Data</div>
+</div></div><div class="toctree-wrapper compound">
+</div>
+</section>
+
+
+          </div>
+          
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+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
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+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
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+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
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+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="current reference internal" href="#">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
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+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  <li><a href="../index.html">Example Gallery</a><ul>
+      <li>Previous: <a href="../index.html" title="previous chapter">Example Gallery</a></li>
+      <li>Next: <a href="plot_dataset_arithmetic.html" title="next chapter">Dataset Arithmetic</a></li>
+  </ul></li>
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+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
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+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
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+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/auto_examples/datasets/index.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
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+</html>
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diff --git a/auto_examples/datasets/plot_dataset_arithmetic.html b/auto_examples/datasets/plot_dataset_arithmetic.html
index bf7a40d37..b3f5bc9fd 100644
--- a/auto_examples/datasets/plot_dataset_arithmetic.html
+++ b/auto_examples/datasets/plot_dataset_arithmetic.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+    <title>Dataset Arithmetic &#8212; pycortex 1.2.8 documentation</title>
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Map from Volume to Vertex Data" href="plot_volume_to_vertex.html" />
-    <link rel="prev" title="Example Gallery" href="../index.html" />
+    <link rel="prev" title="Datasets Examples" href="index.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-dataset-arithmetic-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-dataset-arithmetic-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="dataset-arithmetic">
-<span id="sphx-glr-auto-examples-datasets-plot-dataset-arithmetic-py"></span><h1>Dataset Arithmetic<a class="headerlink" href="#dataset-arithmetic" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-datasets-plot-dataset-arithmetic-py"></span><h1>Dataset Arithmetic<a class="headerlink" href="#dataset-arithmetic" title="Link to this heading">¶</a></h1>
 <p>This plots example volume data onto an example subject, S1, onto a flatmap
 using quickflat. In order for this to run, you have to have a flatmap for
 this subject in the pycortex filestore.</p>
@@ -54,26 +53,19 @@
 <li><img src="../../_images/sphx_glr_plot_dataset_arithmetic_002.png" srcset="../../_images/sphx_glr_plot_dataset_arithmetic_002.png" alt="plot dataset arithmetic" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_dataset_arithmetic_003.png" srcset="../../_images/sphx_glr_plot_dataset_arithmetic_003.png" alt="plot dataset arithmetic" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
 <div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Generating a flatmap cache
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 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
@@ -102,14 +94,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/54a8cbeb6468de47878805ed733e27c3/plot_dataset_arithmetic.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_dataset_arithmetic.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -149,23 +141,24 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Dataset Arithmetic</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume_to_vertex.html">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume.html">Plot Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex.html">Plot Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex2D.html">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume2D.html">Plot 2D Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertexRGB.html">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volumeRGB.html">Plot RGB Volume Data</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -178,13 +171,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="../index.html" title="previous chapter">Example Gallery</a></li>
+  <li><a href="index.html">Datasets Examples</a><ul>
+      <li>Previous: <a href="index.html" title="previous chapter">Datasets Examples</a></li>
       <li>Next: <a href="plot_volume_to_vertex.html" title="next chapter">Map from Volume to Vertex Data</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -192,8 +187,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -207,11 +202,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/datasets/plot_dataset_arithmetic.rst.txt"
diff --git a/auto_examples/datasets/plot_vertex.html b/auto_examples/datasets/plot_vertex.html
index 0145bed53..9d62b60d9 100644
--- a/auto_examples/datasets/plot_vertex.html
+++ b/auto_examples/datasets/plot_vertex.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot Vertex Data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot Vertex Data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot 2D Vertex Data" href="plot_vertex2D.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-vertex-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-vertex-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-vertex-data">
-<span id="sphx-glr-auto-examples-datasets-plot-vertex-py"></span><h1>Plot Vertex Data<a class="headerlink" href="#plot-vertex-data" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-datasets-plot-vertex-py"></span><h1>Plot Vertex Data<a class="headerlink" href="#plot-vertex-data" title="Link to this heading">¶</a></h1>
 <p>This plots example vertex data onto an example subject, S1, onto a flatmap
 using quickflat. In order for this to run, you have to have a flatmap for
 this subject in the pycortex filestore.</p>
@@ -59,21 +58,16 @@
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 <li><img src="../../_images/sphx_glr_plot_vertex_002.png" srcset="../../_images/sphx_glr_plot_vertex_002.png" alt="plot vertex" class = "sphx-glr-multi-img"/></li>
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+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
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 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">cortex.polyutils</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -108,14 +102,14 @@
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+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 3.304 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-datasets-plot-vertex-py">
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/e557fd06e0b65432b45cbb4010baa4d1/plot_vertex.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_vertex.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -155,23 +149,24 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_dataset_arithmetic.html">Dataset Arithmetic</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume_to_vertex.html">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume.html">Plot Volume Data</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex2D.html">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume2D.html">Plot 2D Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertexRGB.html">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volumeRGB.html">Plot RGB Volume Data</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -184,13 +179,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Datasets Examples</a><ul>
       <li>Previous: <a href="plot_volume.html" title="previous chapter">Plot Volume Data</a></li>
       <li>Next: <a href="plot_vertex2D.html" title="next chapter">Plot 2D Vertex Data</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -198,8 +195,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -213,11 +210,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/datasets/plot_vertex.rst.txt"
diff --git a/auto_examples/datasets/plot_vertex2D.html b/auto_examples/datasets/plot_vertex2D.html
index 514235bf5..f788b124a 100644
--- a/auto_examples/datasets/plot_vertex2D.html
+++ b/auto_examples/datasets/plot_vertex2D.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot 2D Vertex Data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot 2D Vertex Data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot 2D Volume Data" href="plot_volume2D.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,30 +38,27 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-vertex2d-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-vertex2d-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-2d-vertex-data">
-<span id="sphx-glr-auto-examples-datasets-plot-vertex2d-py"></span><h1>Plot 2D Vertex Data<a class="headerlink" href="#plot-2d-vertex-data" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-datasets-plot-vertex2d-py"></span><h1>Plot 2D Vertex Data<a class="headerlink" href="#plot-2d-vertex-data" title="Link to this heading">¶</a></h1>
 <p>This plots example 2D vertex data onto an example subject, S1, onto a flatmap
 using quickflat. In order for this to run, you have to have a flatmap for this
 subject in the pycortex filestore.</p>
 <p>The cortex.Vertex2D object is instantiated with two numpy arrays of the same
 size as the total number of vertices in that subject’s flatmap. Each pixel is
-colored according to both vlaues given for the nearest vertex in the flatmap.</p>
+colored according to both values given for the nearest vertex in the flatmap.</p>
 <p>Instead of random test data, you can replace these with any arrays that are
 the length of the all the vertices in the subject.</p>
-<img src="../../_images/sphx_glr_plot_vertex2D_001.png" srcset="../../_images/sphx_glr_plot_vertex2D_001.png" alt="plot vertex2D" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
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-** (inkscape:5161): CRITICAL **: 01:27:14.312: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5161): CRITICAL **: 01:27:14.312: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_vertex2D_001.png" srcset="../../_images/sphx_glr_plot_vertex2D_001.png" alt="plot vertex2D" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">cortex.polyutils</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
@@ -94,14 +90,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  1.972 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-datasets-plot-vertex2d-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/754fde0603a864be35c06d16e10d60fc/plot_vertex2D.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_vertex2D.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 1.433 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-datasets-plot-vertex2d-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/8cf11f78d8c4186f5276b30e9ad94586/plot_vertex2D.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_vertex2D.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/754fde0603a864be35c06d16e10d60fc/plot_vertex2D.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_vertex2D.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -141,23 +137,24 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_dataset_arithmetic.html">Dataset Arithmetic</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume_to_vertex.html">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume.html">Plot Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex.html">Plot Vertex Data</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume2D.html">Plot 2D Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertexRGB.html">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volumeRGB.html">Plot RGB Volume Data</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -170,13 +167,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Datasets Examples</a><ul>
       <li>Previous: <a href="plot_vertex.html" title="previous chapter">Plot Vertex Data</a></li>
       <li>Next: <a href="plot_volume2D.html" title="next chapter">Plot 2D Volume Data</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -184,8 +183,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -199,11 +198,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/datasets/plot_vertex2D.rst.txt"
diff --git a/auto_examples/datasets/plot_vertexRGB.html b/auto_examples/datasets/plot_vertexRGB.html
index 878ca5cb1..49d8f03d0 100644
--- a/auto_examples/datasets/plot_vertexRGB.html
+++ b/auto_examples/datasets/plot_vertexRGB.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot RGB Vertex Data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot RGB Vertex Data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot RGB Volume Data" href="plot_volumeRGB.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-vertexrgb-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-vertexrgb-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-rgb-vertex-data">
-<span id="sphx-glr-auto-examples-datasets-plot-vertexrgb-py"></span><h1>Plot RGB Vertex Data<a class="headerlink" href="#plot-rgb-vertex-data" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-datasets-plot-vertexrgb-py"></span><h1>Plot RGB Vertex Data<a class="headerlink" href="#plot-rgb-vertex-data" title="Link to this heading">¶</a></h1>
 <p>This plots example RGB vertex data onto an example subject, S1, onto a flatmap
 using quickflat. In order for this to run, you have to have a flatmap for this
 subject in the pycortex filestore.</p>
@@ -53,17 +52,14 @@
 <p>Here, two datasets are generated to look like gradients across the brain and
 a third dataset makes a series of random stripes across the brain. You can
 use any cortex.Vertex objects in their place though.</p>
-<img src="../../_images/sphx_glr_plot_vertexRGB_001.png" srcset="../../_images/sphx_glr_plot_vertexRGB_001.png" alt="plot vertexRGB" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
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-** (inkscape:5177): CRITICAL **: 01:27:22.876: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5177): CRITICAL **: 01:27:22.876: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_vertexRGB_001.png" srcset="../../_images/sphx_glr_plot_vertexRGB_001.png" alt="plot vertexRGB" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">cortex.polyutils</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -112,14 +108,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  1.988 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-datasets-plot-vertexrgb-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/d4dbe6d537ab3b8867c534a4e21a5c19/plot_vertexRGB.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_vertexRGB.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 1.425 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-datasets-plot-vertexrgb-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/88045a5ca44795160381b3e40115ed85/plot_vertexRGB.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_vertexRGB.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/d4dbe6d537ab3b8867c534a4e21a5c19/plot_vertexRGB.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_vertexRGB.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -159,23 +155,24 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_dataset_arithmetic.html">Dataset Arithmetic</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume_to_vertex.html">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume.html">Plot Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex.html">Plot Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex2D.html">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume2D.html">Plot 2D Volume Data</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volumeRGB.html">Plot RGB Volume Data</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
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@@ -188,13 +185,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Datasets Examples</a><ul>
       <li>Previous: <a href="plot_volume2D.html" title="previous chapter">Plot 2D Volume Data</a></li>
       <li>Next: <a href="plot_volumeRGB.html" title="next chapter">Plot RGB Volume Data</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -202,8 +201,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -217,11 +216,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/datasets/plot_vertexRGB.rst.txt"
diff --git a/auto_examples/datasets/plot_volume.html b/auto_examples/datasets/plot_volume.html
index fbee04424..c1905ce4a 100644
--- a/auto_examples/datasets/plot_volume.html
+++ b/auto_examples/datasets/plot_volume.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot Volume Data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot Volume Data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot Vertex Data" href="plot_vertex.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-volume-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-volume-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-volume-data">
-<span id="sphx-glr-auto-examples-datasets-plot-volume-py"></span><h1>Plot Volume Data<a class="headerlink" href="#plot-volume-data" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-datasets-plot-volume-py"></span><h1>Plot Volume Data<a class="headerlink" href="#plot-volume-data" title="Link to this heading">¶</a></h1>
 <p>This plots example volume data onto an example subject, S1, onto a flatmap
 using quickflat. In order for this to run, you have to have a flatmap for
 this subject in the pycortex filestore.</p>
@@ -59,25 +58,18 @@
 <li><img src="../../_images/sphx_glr_plot_volume_002.png" srcset="../../_images/sphx_glr_plot_volume_002.png" alt="plot volume" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_volume_003.png" srcset="../../_images/sphx_glr_plot_volume_003.png" alt="plot volume" class = "sphx-glr-multi-img"/></li>
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+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
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+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
@@ -107,14 +99,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
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-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 4.868 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-datasets-plot-volume-py">
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 <p><a class="reference download internal" download="" href="../../_downloads/6c38c4cf54bcaedfa877a93db30d0119/plot_volume.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_volume.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/41718c0228b5ac3da2783c089c13420f/plot_volume.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_volume.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
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@@ -154,23 +146,24 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_dataset_arithmetic.html">Dataset Arithmetic</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume_to_vertex.html">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex.html">Plot Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex2D.html">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume2D.html">Plot 2D Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertexRGB.html">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volumeRGB.html">Plot RGB Volume Data</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -183,13 +176,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Datasets Examples</a><ul>
       <li>Previous: <a href="plot_volume_to_vertex.html" title="previous chapter">Map from Volume to Vertex Data</a></li>
       <li>Next: <a href="plot_vertex.html" title="next chapter">Plot Vertex Data</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -197,8 +192,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -212,11 +207,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/datasets/plot_volume.rst.txt"
diff --git a/auto_examples/datasets/plot_volume2D.html b/auto_examples/datasets/plot_volume2D.html
index d05e2e203..c81968417 100644
--- a/auto_examples/datasets/plot_volume2D.html
+++ b/auto_examples/datasets/plot_volume2D.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot 2D Volume Data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot 2D Volume Data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot RGB Vertex Data" href="plot_vertexRGB.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-volume2d-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-volume2d-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-2d-volume-data">
-<span id="sphx-glr-auto-examples-datasets-plot-volume2d-py"></span><h1>Plot 2D Volume Data<a class="headerlink" href="#plot-2d-volume-data" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-datasets-plot-volume2d-py"></span><h1>Plot 2D Volume Data<a class="headerlink" href="#plot-2d-volume-data" title="Link to this heading">¶</a></h1>
 <p>This plots example volume data onto an example subject, S1, onto a flatmap
 using quickflat. In order for this to run, you have to have a flatmap for
 this subject in the pycortex filestore.</p>
@@ -63,29 +62,18 @@
 <li><img src="../../_images/sphx_glr_plot_volume2D_002.png" srcset="../../_images/sphx_glr_plot_volume2D_002.png" alt="plot volume2D" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_volume2D_003.png" srcset="../../_images/sphx_glr_plot_volume2D_003.png" alt="plot volume2D" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
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-/home/runner/work/pycortex/pycortex/cortex/quickflat/utils.py:497: UserWarning: Trying to register the cmap &#39;RdBu_covar&#39; which already exists.
-  cm.register_cmap(dataview.cmap, cmap)
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-** (inkscape:5171): CRITICAL **: 01:27:18.683: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
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 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
@@ -120,14 +108,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/9678ad75a5693c67b96cdc1c23d5700c/plot_volume2D.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_volume2D.py</span></code></a></p>
+</div>
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 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
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@@ -167,23 +155,24 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_dataset_arithmetic.html">Dataset Arithmetic</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume_to_vertex.html">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume.html">Plot Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex.html">Plot Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex2D.html">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot 2D Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertexRGB.html">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volumeRGB.html">Plot RGB Volume Data</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -196,13 +185,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Datasets Examples</a><ul>
       <li>Previous: <a href="plot_vertex2D.html" title="previous chapter">Plot 2D Vertex Data</a></li>
       <li>Next: <a href="plot_vertexRGB.html" title="next chapter">Plot RGB Vertex Data</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -210,8 +201,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -225,11 +216,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/datasets/plot_volume2D.rst.txt"
diff --git a/auto_examples/datasets/plot_volumeRGB.html b/auto_examples/datasets/plot_volumeRGB.html
index ac65c6772..cb9cba60b 100644
--- a/auto_examples/datasets/plot_volumeRGB.html
+++ b/auto_examples/datasets/plot_volumeRGB.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot RGB Volume Data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot RGB Volume Data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Import fmriprep output" href="../import_surface/import_fmriprep.html" />
+    <link rel="next" title="Examples with fsaverage" href="../fsaverage/index.html" />
     <link rel="prev" title="Plot RGB Vertex Data" href="plot_vertexRGB.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-volumergb-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-volumergb-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-rgb-volume-data">
-<span id="sphx-glr-auto-examples-datasets-plot-volumergb-py"></span><h1>Plot RGB Volume Data<a class="headerlink" href="#plot-rgb-volume-data" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-datasets-plot-volumergb-py"></span><h1>Plot RGB Volume Data<a class="headerlink" href="#plot-rgb-volume-data" title="Link to this heading">¶</a></h1>
 <p>This plots an example RGB dataset onto an example subject, S1, onto a flatmap
 using quickflat. In order for this to run, you have to a have a flatmap for
 this subject in the pycortex filestore.</p>
@@ -71,25 +70,18 @@
 <li><img src="../../_images/sphx_glr_plot_volumeRGB_002.png" srcset="../../_images/sphx_glr_plot_volumeRGB_002.png" alt="plot volumeRGB" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_volumeRGB_003.png" srcset="../../_images/sphx_glr_plot_volumeRGB_003.png" alt="plot volumeRGB" class = "sphx-glr-multi-img"/></li>
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 </div>
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 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
@@ -147,14 +139,14 @@
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-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 11.075 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-datasets-plot-volumergb-py">
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/143d83c2f8fe0044f498e638bde3f0a0/plot_volumeRGB.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_volumeRGB.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -194,23 +186,24 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_dataset_arithmetic.html">Dataset Arithmetic</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume_to_vertex.html">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume.html">Plot Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex.html">Plot Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex2D.html">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume2D.html">Plot 2D Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertexRGB.html">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot RGB Volume Data</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
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@@ -223,13 +216,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Datasets Examples</a><ul>
       <li>Previous: <a href="plot_vertexRGB.html" title="previous chapter">Plot RGB Vertex Data</a></li>
-      <li>Next: <a href="../import_surface/import_fmriprep.html" title="next chapter">Import fmriprep output</a></li>
+      <li>Next: <a href="../fsaverage/index.html" title="next chapter">Examples with fsaverage</a></li>
+  </ul></li>
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+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -237,8 +232,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -252,11 +247,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/datasets/plot_volumeRGB.rst.txt"
diff --git a/auto_examples/datasets/plot_volume_to_vertex.html b/auto_examples/datasets/plot_volume_to_vertex.html
index 0b642590e..3910554ef 100644
--- a/auto_examples/datasets/plot_volume_to_vertex.html
+++ b/auto_examples/datasets/plot_volume_to_vertex.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Map from Volume to Vertex Data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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     <link rel="next" title="Plot Volume Data" href="plot_volume.html" />
@@ -24,8 +22,9 @@
    
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+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-volume-to-vertex-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-datasets-plot-volume-to-vertex-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="map-from-volume-to-vertex-data">
-<span id="sphx-glr-auto-examples-datasets-plot-volume-to-vertex-py"></span><h1>Map from Volume to Vertex Data<a class="headerlink" href="#map-from-volume-to-vertex-data" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-datasets-plot-volume-to-vertex-py"></span><h1>Map from Volume to Vertex Data<a class="headerlink" href="#map-from-volume-to-vertex-data" title="Link to this heading">¶</a></h1>
 <p>In order to move from Volume data to Vertex data, you start with data from
 voxels and then create a cortex.Volume object. Then, you get a mapper to go
 between voxels and vertices for the specific subject and transform you are
@@ -53,22 +52,17 @@
 <li><img src="../../_images/sphx_glr_plot_volume_to_vertex_001.png" srcset="../../_images/sphx_glr_plot_volume_to_vertex_001.png" alt="plot volume to vertex" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_volume_to_vertex_002.png" srcset="../../_images/sphx_glr_plot_volume_to_vertex_002.png" alt="plot volume to vertex" class = "sphx-glr-multi-img"/></li>
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+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
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+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">cortex.polyutils</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -94,14 +88,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
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-</div>
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/c30a2339f912a1a9735b474029e920d0/plot_volume_to_vertex.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_volume_to_vertex.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -141,23 +135,24 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_dataset_arithmetic.html">Dataset Arithmetic</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume.html">Plot Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex.html">Plot Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertex2D.html">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volume2D.html">Plot 2D Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_vertexRGB.html">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_volumeRGB.html">Plot RGB Volume Data</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -170,13 +165,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Datasets Examples</a><ul>
       <li>Previous: <a href="plot_dataset_arithmetic.html" title="previous chapter">Dataset Arithmetic</a></li>
       <li>Next: <a href="plot_volume.html" title="next chapter">Plot Volume Data</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -184,8 +181,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -199,11 +196,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/auto_examples/datasets/plot_volume_to_vertex.rst.txt"
diff --git a/auto_examples/datasets/sg_execution_times.html b/auto_examples/datasets/sg_execution_times.html
index 2117f24ce..e984399f6 100644
--- a/auto_examples/datasets/sg_execution_times.html
+++ b/auto_examples/datasets/sg_execution_times.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Computation times &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
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@@ -36,49 +35,63 @@
           <div class="body" role="main">
             
   <section id="computation-times">
-<span id="sphx-glr-auto-examples-datasets-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Permalink to this headline">¶</a></h1>
-<p><strong>01:03.893</strong> total execution time for <strong>auto_examples_datasets</strong> files:</p>
-<table class="docutils align-default">
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-<col style="width: 84%" />
-<col style="width: 9%" />
-<col style="width: 7%" />
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-<tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_dataset_arithmetic.html#sphx-glr-auto-examples-datasets-plot-dataset-arithmetic-py"><span class="std std-ref">Dataset Arithmetic</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_dataset_arithmetic.py</span></code>)</p></td>
-<td><p>00:18.572</p></td>
-<td><p>0.0 MB</p></td>
+<span id="sphx-glr-auto-examples-datasets-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>00:47.006</strong> total execution time for 8 files <strong>from auto_examples/datasets</strong>:</p>
+<div class="docutils container">
+<style scoped>
+<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
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+<script type="text/javascript" class="init">
+$(document).ready( function () {
+    $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+} );
+</script><table class="table table-striped sg-datatable docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_volumeRGB.html#sphx-glr-auto-examples-datasets-plot-volumergb-py"><span class="std std-ref">Plot RGB Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_volumeRGB.py</span></code>)</p></td>
-<td><p>00:17.227</p></td>
-<td><p>0.0 MB</p></td>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_dataset_arithmetic.html#sphx-glr-auto-examples-datasets-plot-dataset-arithmetic-py"><span class="std std-ref">Dataset Arithmetic</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_dataset_arithmetic.py</span></code>)</p></td>
+<td><p>00:14.861</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_volume_to_vertex.html#sphx-glr-auto-examples-datasets-plot-volume-to-vertex-py"><span class="std std-ref">Map from Volume to Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_volume_to_vertex.py</span></code>)</p></td>
-<td><p>00:07.047</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_volumeRGB.html#sphx-glr-auto-examples-datasets-plot-volumergb-py"><span class="std std-ref">Plot RGB Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_volumeRGB.py</span></code>)</p></td>
+<td><p>00:11.075</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_volume.html#sphx-glr-auto-examples-datasets-plot-volume-py"><span class="std std-ref">Plot Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_volume.py</span></code>)</p></td>
-<td><p>00:06.435</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_volume_to_vertex.html#sphx-glr-auto-examples-datasets-plot-volume-to-vertex-py"><span class="std std-ref">Map from Volume to Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_volume_to_vertex.py</span></code>)</p></td>
+<td><p>00:05.438</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_volume2D.html#sphx-glr-auto-examples-datasets-plot-volume2d-py"><span class="std std-ref">Plot 2D Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_volume2D.py</span></code>)</p></td>
-<td><p>00:06.264</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_volume.html#sphx-glr-auto-examples-datasets-plot-volume-py"><span class="std std-ref">Plot Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_volume.py</span></code>)</p></td>
+<td><p>00:04.868</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_vertex.html#sphx-glr-auto-examples-datasets-plot-vertex-py"><span class="std std-ref">Plot Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_vertex.py</span></code>)</p></td>
-<td><p>00:04.388</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_volume2D.html#sphx-glr-auto-examples-datasets-plot-volume2d-py"><span class="std std-ref">Plot 2D Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_volume2D.py</span></code>)</p></td>
+<td><p>00:04.602</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_vertexRGB.html#sphx-glr-auto-examples-datasets-plot-vertexrgb-py"><span class="std std-ref">Plot RGB Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_vertexRGB.py</span></code>)</p></td>
-<td><p>00:01.988</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_vertex.html#sphx-glr-auto-examples-datasets-plot-vertex-py"><span class="std std-ref">Plot Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_vertex.py</span></code>)</p></td>
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 <tr class="row-even"><td><p><a class="reference internal" href="plot_vertex2D.html#sphx-glr-auto-examples-datasets-plot-vertex2d-py"><span class="std std-ref">Plot 2D Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_vertex2D.py</span></code>)</p></td>
-<td><p>00:01.972</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>00:01.433</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_vertexRGB.html#sphx-glr-auto-examples-datasets-plot-vertexrgb-py"><span class="std std-ref">Plot RGB Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_vertexRGB.py</span></code>)</p></td>
+<td><p>00:01.425</p></td>
+<td><p>0.0</p></td>
 </tr>
 </tbody>
 </table>
+</div>
 </section>
 
 
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new file mode 100644
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+<!DOCTYPE html>
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+<span id="sphx-glr-auto-examples-fsaverage"></span><h1>Examples with fsaverage<a class="headerlink" href="#examples-with-fsaverage" title="Link to this heading">¶</a></h1>
+<p>Examples showing how to use PyCortex to visualize data on fsaverage.</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="This example shows how data in a lower resolution fsaverage template  (e.g., fsaverage5 or fsav..."><img alt="" src="../../_images/sphx_glr_upsample_to_fsaverage_thumb.png" />
+<p><a class="reference internal" href="upsample_to_fsaverage.html#sphx-glr-auto-examples-fsaverage-upsample-to-fsaverage-py"><span class="std std-ref">Upsample data from a lower resolution fsaverage template to fsaverage for visualization</span></a></p>
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new file mode 100644
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@@ -0,0 +1,154 @@
+<!DOCTYPE html>
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+<span id="sphx-glr-auto-examples-fsaverage-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>00:00.000</strong> total execution time for 1 file <strong>from auto_examples/fsaverage</strong>:</p>
+<div class="docutils container">
+<style scoped>
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+</script><table class="table table-striped sg-datatable docutils align-default">
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+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference internal" href="upsample_to_fsaverage.html#sphx-glr-auto-examples-fsaverage-upsample-to-fsaverage-py"><span class="std std-ref">Upsample data from a lower resolution fsaverage template to fsaverage for visualization</span></a> (<code class="docutils literal notranslate"><span class="pre">upsample_to_fsaverage.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+</tbody>
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diff --git a/auto_examples/fsaverage/upsample_to_fsaverage.html b/auto_examples/fsaverage/upsample_to_fsaverage.html
new file mode 100644
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+++ b/auto_examples/fsaverage/upsample_to_fsaverage.html
@@ -0,0 +1,199 @@
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+    <title>Upsample data from a lower resolution fsaverage template to fsaverage for visualization &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+<p class="admonition-title">Note</p>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-fsaverage-upsample-to-fsaverage-py"><span class="std std-ref">Go to the end</span></a>
+to download the full example code</p>
+</div>
+<section class="sphx-glr-example-title" id="upsample-data-from-a-lower-resolution-fsaverage-template-to-fsaverage-for-visualization">
+<span id="sphx-glr-auto-examples-fsaverage-upsample-to-fsaverage-py"></span><h1>Upsample data from a lower resolution fsaverage template to fsaverage for visualization<a class="headerlink" href="#upsample-data-from-a-lower-resolution-fsaverage-template-to-fsaverage-for-visualization" title="Link to this heading">¶</a></h1>
+<p>This example shows how data in a lower resolution fsaverage template
+(e.g., fsaverage5 or fsaverage6) can be upsampled to the high resolution fsaverage
+template for visualization.</p>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
+<span class="kn">import</span> <span class="nn">cortex</span>
+
+<span class="n">subject</span> <span class="o">=</span> <span class="s2">&quot;fsaverage&quot;</span>
+
+<span class="c1"># First we check if the fsaverage template is already in the pycortex filestore. If not,</span>
+<span class="c1"># we download the template from the web and add it to the filestore.</span>
+<span class="k">if</span> <span class="n">subject</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">subjects</span><span class="p">:</span>
+    <span class="n">cortex</span><span class="o">.</span><span class="n">download_subject</span><span class="p">(</span><span class="n">subject</span><span class="p">)</span>
+
+<span class="c1"># Next we create some data on fsaverage5. Each hemisphere has 10242 vertices.</span>
+<span class="n">n_vertices_fsaverage5</span> <span class="o">=</span> <span class="mi">10242</span>
+<span class="n">data_fs5</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">n_vertices_fsaverage5</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+<span class="c1"># We concatenate the data to itself to create a vector of length 20484, corresponding to</span>
+<span class="c1"># the two hemispheres together.</span>
+<span class="n">data_fs5</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">data_fs5</span><span class="p">,</span> <span class="n">data_fs5</span><span class="p">))</span>
+<span class="c1"># Finally, we upsample the data to fsaverage.</span>
+<span class="n">data_fs7</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">freesurfer</span><span class="o">.</span><span class="n">upsample_to_fsaverage</span><span class="p">(</span><span class="n">data_fs5</span><span class="p">,</span> <span class="s2">&quot;fsaverage5&quot;</span><span class="p">)</span>
+
+<span class="c1"># Now that the data is in the fsaverage template, we can visualize it in PyCortex as any</span>
+<span class="c1"># other vertex dataset.</span>
+<span class="n">vtx</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Vertex</span><span class="p">(</span><span class="n">data_fs7</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="n">n_vertices_fsaverage5</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s2">&quot;turbo&quot;</span><span class="p">)</span>
+<span class="n">cortex</span><span class="o">.</span><span class="n">quickshow</span><span class="p">(</span><span class="n">vtx</span><span class="p">,</span> <span class="n">with_curvature</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">with_colorbar</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+<span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
+</pre></div>
+</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-fsaverage-upsample-to-fsaverage-py">
+<div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/7e89eee46d99514db8efb119976e80f8/upsample_to_fsaverage.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">upsample_to_fsaverage.ipynb</span></code></a></p>
+</div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/adbb113238e9e6eed6db37c575b87085/upsample_to_fsaverage.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">upsample_to_fsaverage.py</span></code></a></p>
+</div>
+</div>
+<p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
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+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
+</ul>
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+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Examples with fsaverage</a><ul>
+      <li>Previous: <a href="index.html" title="previous chapter">Examples with fsaverage</a></li>
+      <li>Next: <a href="../import_surface/index.html" title="next chapter">Importing Surfaces Examples</a></li>
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+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
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+
+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/auto_examples/fsaverage/upsample_to_fsaverage.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
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+  </body>
+</html>
\ No newline at end of file
diff --git a/auto_examples/import_surface/import_fmriprep.html b/auto_examples/import_surface/import_fmriprep.html
index 1834f02fd..ca76c5d2c 100644
--- a/auto_examples/import_surface/import_fmriprep.html
+++ b/auto_examples/import_surface/import_fmriprep.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Import fmriprep output &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Import fmriprep output &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Plot sulci on the flatmap" href="../quickflat/plot_sulci.html" />
-    <link rel="prev" title="Plot RGB Volume Data" href="../datasets/plot_volumeRGB.html" />
+    <link rel="next" title="Quickflat Examples" href="../quickflat/index.html" />
+    <link rel="prev" title="Importing Surfaces Examples" href="index.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,16 +38,16 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-import-surface-import-fmriprep-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-import-surface-import-fmriprep-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="import-fmriprep-output">
-<span id="sphx-glr-auto-examples-import-surface-import-fmriprep-py"></span><h1>Import fmriprep output<a class="headerlink" href="#import-fmriprep-output" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-import-surface-import-fmriprep-py"></span><h1>Import fmriprep output<a class="headerlink" href="#import-fmriprep-output" title="Link to this heading">¶</a></h1>
 <p>Recently, many people have start to use fmriprep as a complete preprocessing workflow of anatomical and functional data. Pycortex has a convenience function to import
 the output of this workflow.</p>
 <p>This example is based on the fmriprep 1.0.15 output of openfmri ds000164 that can be found on openneuro.org: <a class="reference external" href="https://openneuro.org/datasets/ds000164/versions/00001">https://openneuro.org/datasets/ds000164/versions/00001</a></p>
 <p>NB: <cite>cortex.fmriprep</cite> is a work-in-progress and cannot currently handle multiple datasets when the subject IDs are the same (see <a class="reference external" href="https://github.com/gallantlab/pycortex/issues/304">https://github.com/gallantlab/pycortex/issues/304</a>).</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">from</span> <span class="nn">cortex</span> <span class="kn">import</span> <span class="n">fmriprep</span>
 <span class="kn">from</span> <span class="nn">os</span> <span class="kn">import</span> <span class="n">path</span> <span class="k">as</span> <span class="n">op</span>
 
@@ -72,14 +71,13 @@
 <span class="n">cortex</span><span class="o">.</span><span class="n">webgl</span><span class="o">.</span><span class="n">show</span><span class="p">(</span><span class="n">ds</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-import-surface-import-fmriprep-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/6d9612f71399b48fcdf9be6a5d6c4b7f/import_fmriprep.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">import_fmriprep.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-import-surface-import-fmriprep-py">
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 <p><a class="reference download internal" download="" href="../../_downloads/bcb26d7471e165be66ecc1ea4a79a747/import_fmriprep.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">import_fmriprep.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/6d9612f71399b48fcdf9be6a5d6c4b7f/import_fmriprep.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">import_fmriprep.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -120,15 +118,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Import fmriprep output</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -141,13 +147,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="../datasets/plot_volumeRGB.html" title="previous chapter">Plot RGB Volume Data</a></li>
-      <li>Next: <a href="../quickflat/plot_sulci.html" title="next chapter">Plot sulci on the flatmap</a></li>
+  <li><a href="index.html">Importing Surfaces Examples</a><ul>
+      <li>Previous: <a href="index.html" title="previous chapter">Importing Surfaces Examples</a></li>
+      <li>Next: <a href="../quickflat/index.html" title="next chapter">Quickflat Examples</a></li>
+  </ul></li>
   </ul></li>
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+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
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@@ -155,8 +163,8 @@ <h3 id="searchlabel">Quick search</h3>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -170,11 +178,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/auto_examples/import_surface/import_fmriprep.rst.txt"
diff --git a/auto_examples/import_surface/index.html b/auto_examples/import_surface/index.html
new file mode 100644
index 000000000..5987ce981
--- /dev/null
+++ b/auto_examples/import_surface/index.html
@@ -0,0 +1,159 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+    <link rel="prev" title="Upsample data from a lower resolution fsaverage template to fsaverage for visualization" href="../fsaverage/upsample_to_fsaverage.html" />
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+            
+  <section id="importing-surfaces-examples">
+<span id="sphx-glr-auto-examples-import-surface"></span><h1>Importing Surfaces Examples<a class="headerlink" href="#importing-surfaces-examples" title="Link to this heading">¶</a></h1>
+<p>Examples demonstrating how to import surfraces from other software (e.g.
+FreeSurfer, fmriprep).</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="Recently, many people have start to use fmriprep as a complete preprocessing workflow of anatom..."><img alt="" src="../../_images/sphx_glr_import_fmriprep_thumb.png" />
+<p><a class="reference internal" href="import_fmriprep.html#sphx-glr-auto-examples-import-surface-import-fmriprep-py"><span class="std std-ref">Import fmriprep output</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Import fmriprep output</div>
+</div></div><div class="toctree-wrapper compound">
+</div>
+</section>
+
+
+          </div>
+          
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+      <li>Previous: <a href="../fsaverage/upsample_to_fsaverage.html" title="previous chapter">Upsample data from a lower resolution fsaverage template to fsaverage for visualization</a></li>
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diff --git a/auto_examples/import_surface/sg_execution_times.html b/auto_examples/import_surface/sg_execution_times.html
new file mode 100644
index 000000000..7449fd792
--- /dev/null
+++ b/auto_examples/import_surface/sg_execution_times.html
@@ -0,0 +1,154 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+<span id="sphx-glr-auto-examples-import-surface-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>00:00.000</strong> total execution time for 1 file <strong>from auto_examples/import_surface</strong>:</p>
+<div class="docutils container">
+<style scoped>
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+    $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+} );
+</script><table class="table table-striped sg-datatable docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference internal" href="import_fmriprep.html#sphx-glr-auto-examples-import-surface-import-fmriprep-py"><span class="std std-ref">Import fmriprep output</span></a> (<code class="docutils literal notranslate"><span class="pre">import_fmriprep.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+</tbody>
+</table>
+</div>
+</section>
+
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+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
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+          rel="nofollow">Page source</a>
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diff --git a/auto_examples/index.html b/auto_examples/index.html
index 9f12d1a88..4ec7c5a5a 100644
--- a/auto_examples/index.html
+++ b/auto_examples/index.html
@@ -1,31 +1,30 @@
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-<html>
+<html lang="en" data-content_root="../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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@@ -38,392 +37,187 @@
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   <section id="example-gallery">
-<span id="general-examples"></span><span id="sphx-glr-auto-examples"></span><h1>Example Gallery<a class="headerlink" href="#example-gallery" title="Permalink to this headline">¶</a></h1>
-<div class="contents local topic" id="contents">
+<span id="general-examples"></span><h1>Example Gallery<a class="headerlink" href="#example-gallery" title="Link to this heading">¶</a></h1>
+<nav class="contents local" id="contents">
 <p class="topic-title">Contents</p>
 <ul class="simple">
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-<li><p><a class="reference internal" href="#surface-analysis-examples" id="id48">Surface Analysis Examples</a></p></li>
-<li><p><a class="reference internal" href="#utility-examples" id="id49">Utility Examples</a></p></li>
-<li><p><a class="reference internal" href="#webgl-examples" id="id50">WebGL Examples</a></p></li>
+<li><p><a class="reference internal" href="#datasets-examples" id="id1">Datasets Examples</a></p></li>
+<li><p><a class="reference internal" href="#examples-with-fsaverage" id="id2">Examples with fsaverage</a></p></li>
+<li><p><a class="reference internal" href="#importing-surfaces-examples" id="id3">Importing Surfaces Examples</a></p></li>
+<li><p><a class="reference internal" href="#quickflat-examples" id="id4">Quickflat Examples</a></p></li>
+<li><p><a class="reference internal" href="#quickstart-examples" id="id5">Quickstart Examples</a></p></li>
+<li><p><a class="reference internal" href="#surface-analysis-examples" id="id6">Surface Analysis Examples</a></p></li>
+<li><p><a class="reference internal" href="#utility-examples" id="id7">Utility Examples</a></p></li>
+<li><p><a class="reference internal" href="#webgl-examples" id="id8">WebGL Examples</a></p></li>
 </ul>
-</div>
-<div class="sphx-glr-clear"></div><section id="datasets-examples">
-<span id="sphx-glr-auto-examples-datasets"></span><h2><a class="toc-backref" href="#id44">Datasets Examples</a><a class="headerlink" href="#datasets-examples" title="Permalink to this headline">¶</a></h2>
+</nav>
+<div class="sphx-glr-thumbnails"></div><section id="datasets-examples">
+<h2><a class="toc-backref" href="#id1" role="doc-backlink">Datasets Examples</a><a class="headerlink" href="#datasets-examples" title="Link to this heading">¶</a></h2>
 <p>Examples demonstrating how to create, manipulate, plot datasets.</p>
-<div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><figure class="align-default" id="id1">
-<img alt="Dataset Arithmetic" src="../_images/sphx_glr_plot_dataset_arithmetic_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="datasets/plot_dataset_arithmetic.html#sphx-glr-auto-examples-datasets-plot-dataset-arithmetic-py"><span class="std std-ref">Dataset Arithmetic</span></a></span><a class="headerlink" href="#id1" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="In order to move from Volume data to Vertex data, you start with data from voxels and then crea..."><figure class="align-default" id="id2">
-<img alt="Map from Volume to Vertex Data" src="../_images/sphx_glr_plot_volume_to_vertex_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="datasets/plot_volume_to_vertex.html#sphx-glr-auto-examples-datasets-plot-volume-to-vertex-py"><span class="std std-ref">Map from Volume to Vertex Data</span></a></span><a class="headerlink" href="#id2" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><figure class="align-default" id="id3">
-<img alt="Plot Volume Data" src="../_images/sphx_glr_plot_volume_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="datasets/plot_volume.html#sphx-glr-auto-examples-datasets-plot-volume-py"><span class="std std-ref">Plot Volume Data</span></a></span><a class="headerlink" href="#id3" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="This plots example vertex data onto an example subject, S1, onto a flatmap using quickflat. In ..."><figure class="align-default" id="id4">
-<img alt="Plot Vertex Data" src="../_images/sphx_glr_plot_vertex_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="datasets/plot_vertex.html#sphx-glr-auto-examples-datasets-plot-vertex-py"><span class="std std-ref">Plot Vertex Data</span></a></span><a class="headerlink" href="#id4" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="This plots example 2D vertex data onto an example subject, S1, onto a flatmap using quickflat. ..."><figure class="align-default" id="id5">
-<img alt="Plot 2D Vertex Data" src="../_images/sphx_glr_plot_vertex2D_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="datasets/plot_vertex2D.html#sphx-glr-auto-examples-datasets-plot-vertex2d-py"><span class="std std-ref">Plot 2D Vertex Data</span></a></span><a class="headerlink" href="#id5" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><figure class="align-default" id="id6">
-<img alt="Plot 2D Volume Data" src="../_images/sphx_glr_plot_volume2D_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="datasets/plot_volume2D.html#sphx-glr-auto-examples-datasets-plot-volume2d-py"><span class="std std-ref">Plot 2D Volume Data</span></a></span><a class="headerlink" href="#id6" title="Permalink to this image">¶</a></p>
-</figcaption>
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-</div><div class="toctree-wrapper compound">
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-<div class="sphx-glr-thumbcontainer" tooltip="This plots example RGB vertex data onto an example subject, S1, onto a flatmap using quickflat...."><figure class="align-default" id="id7">
-<img alt="Plot RGB Vertex Data" src="../_images/sphx_glr_plot_vertexRGB_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="datasets/plot_vertexRGB.html#sphx-glr-auto-examples-datasets-plot-vertexrgb-py"><span class="std std-ref">Plot RGB Vertex Data</span></a></span><a class="headerlink" href="#id7" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="This plots an example RGB dataset onto an example subject, S1, onto a flatmap using quickflat. ..."><figure class="align-default" id="id8">
-<img alt="Plot RGB Volume Data" src="../_images/sphx_glr_plot_volumeRGB_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="datasets/plot_volumeRGB.html#sphx-glr-auto-examples-datasets-plot-volumergb-py"><span class="std std-ref">Plot RGB Volume Data</span></a></span><a class="headerlink" href="#id8" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-clear"></div></section>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><img alt="" src="../_images/sphx_glr_plot_dataset_arithmetic_thumb.png" />
+<p><a class="reference internal" href="datasets/plot_dataset_arithmetic.html#sphx-glr-auto-examples-datasets-plot-dataset-arithmetic-py"><span class="std std-ref">Dataset Arithmetic</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Dataset Arithmetic</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="In order to move from Volume data to Vertex data, you start with data from voxels and then crea..."><img alt="" src="../_images/sphx_glr_plot_volume_to_vertex_thumb.png" />
+<p><a class="reference internal" href="datasets/plot_volume_to_vertex.html#sphx-glr-auto-examples-datasets-plot-volume-to-vertex-py"><span class="std std-ref">Map from Volume to Vertex Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Map from Volume to Vertex Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><img alt="" src="../_images/sphx_glr_plot_volume_thumb.png" />
+<p><a class="reference internal" href="datasets/plot_volume.html#sphx-glr-auto-examples-datasets-plot-volume-py"><span class="std std-ref">Plot Volume Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot Volume Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example vertex data onto an example subject, S1, onto a flatmap using quickflat. In ..."><img alt="" src="../_images/sphx_glr_plot_vertex_thumb.png" />
+<p><a class="reference internal" href="datasets/plot_vertex.html#sphx-glr-auto-examples-datasets-plot-vertex-py"><span class="std std-ref">Plot Vertex Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot Vertex Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example 2D vertex data onto an example subject, S1, onto a flatmap using quickflat. ..."><img alt="" src="../_images/sphx_glr_plot_vertex2D_thumb.png" />
+<p><a class="reference internal" href="datasets/plot_vertex2D.html#sphx-glr-auto-examples-datasets-plot-vertex2d-py"><span class="std std-ref">Plot 2D Vertex Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot 2D Vertex Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example volume data onto an example subject, S1, onto a flatmap using quickflat. In ..."><img alt="" src="../_images/sphx_glr_plot_volume2D_thumb.png" />
+<p><a class="reference internal" href="datasets/plot_volume2D.html#sphx-glr-auto-examples-datasets-plot-volume2d-py"><span class="std std-ref">Plot 2D Volume Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot 2D Volume Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots example RGB vertex data onto an example subject, S1, onto a flatmap using quickflat...."><img alt="" src="../_images/sphx_glr_plot_vertexRGB_thumb.png" />
+<p><a class="reference internal" href="datasets/plot_vertexRGB.html#sphx-glr-auto-examples-datasets-plot-vertexrgb-py"><span class="std std-ref">Plot RGB Vertex Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot RGB Vertex Data</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots an example RGB dataset onto an example subject, S1, onto a flatmap using quickflat. ..."><img alt="" src="../_images/sphx_glr_plot_volumeRGB_thumb.png" />
+<p><a class="reference internal" href="datasets/plot_volumeRGB.html#sphx-glr-auto-examples-datasets-plot-volumergb-py"><span class="std std-ref">Plot RGB Volume Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot RGB Volume Data</div>
+</div></div></section>
+<section id="examples-with-fsaverage">
+<h2><a class="toc-backref" href="#id2" role="doc-backlink">Examples with fsaverage</a><a class="headerlink" href="#examples-with-fsaverage" title="Link to this heading">¶</a></h2>
+<p>Examples showing how to use PyCortex to visualize data on fsaverage.</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="This example shows how data in a lower resolution fsaverage template  (e.g., fsaverage5 or fsav..."><img alt="" src="../_images/sphx_glr_upsample_to_fsaverage_thumb.png" />
+<p><a class="reference internal" href="fsaverage/upsample_to_fsaverage.html#sphx-glr-auto-examples-fsaverage-upsample-to-fsaverage-py"><span class="std std-ref">Upsample data from a lower resolution fsaverage template to fsaverage for visualization</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Upsample data from a lower resolution fsaverage template to fsaverage for visualization</div>
+</div></div></section>
 <section id="importing-surfaces-examples">
-<span id="sphx-glr-auto-examples-import-surface"></span><h2><a class="toc-backref" href="#id45">Importing Surfaces Examples</a><a class="headerlink" href="#importing-surfaces-examples" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id3" role="doc-backlink">Importing Surfaces Examples</a><a class="headerlink" href="#importing-surfaces-examples" title="Link to this heading">¶</a></h2>
 <p>Examples demonstrating how to import surfraces from other software (e.g.
 FreeSurfer, fmriprep).</p>
-<div class="sphx-glr-thumbcontainer" tooltip="Recently, many people have start to use fmriprep as a complete preprocessing workflow of anatom..."><figure class="align-default" id="id9">
-<img alt="Import fmriprep output" src="../_images/sphx_glr_import_fmriprep_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="import_surface/import_fmriprep.html#sphx-glr-auto-examples-import-surface-import-fmriprep-py"><span class="std std-ref">Import fmriprep output</span></a></span><a class="headerlink" href="#id9" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-clear"></div></section>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="Recently, many people have start to use fmriprep as a complete preprocessing workflow of anatom..."><img alt="" src="../_images/sphx_glr_import_fmriprep_thumb.png" />
+<p><a class="reference internal" href="import_surface/import_fmriprep.html#sphx-glr-auto-examples-import-surface-import-fmriprep-py"><span class="std std-ref">Import fmriprep output</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Import fmriprep output</div>
+</div></div></section>
 <section id="quickflat-examples">
-<span id="sphx-glr-auto-examples-quickflat"></span><h2><a class="toc-backref" href="#id46">Quickflat Examples</a><a class="headerlink" href="#quickflat-examples" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id4" role="doc-backlink">Quickflat Examples</a><a class="headerlink" href="#quickflat-examples" title="Link to this heading">¶</a></h2>
 <p>Examples demonstrating how to create flatmaps.</p>
-<div class="sphx-glr-thumbcontainer" tooltip="The sulci are defined in a sub-layer of the sulci layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg."><figure class="align-default" id="id10">
-<img alt="Plot sulci on the flatmap" src="../_images/sphx_glr_plot_sulci_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_sulci.html#sphx-glr-auto-examples-quickflat-plot-sulci-py"><span class="std std-ref">Plot sulci on the flatmap</span></a></span><a class="headerlink" href="#id10" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="A dropout region is a region with very low EPI signal. In pycortex a crosshatch is used to disp..."><figure class="align-default" id="id11">
-<img alt="Plot dropout regions on the flatmap" src="../_images/sphx_glr_plot_dropout_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_dropout.html#sphx-glr-auto-examples-quickflat-plot-dropout-py"><span class="std std-ref">Plot dropout regions on the flatmap</span></a></span><a class="headerlink" href="#id11" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as SVG file."><figure class="align-default" id="id12">
-<img alt="Save a 2D static flatmap as SVG" src="../_images/sphx_glr_plot_make_svg_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_make_svg.html#sphx-glr-auto-examples-quickflat-plot-make-svg-py"><span class="std std-ref">Save a 2D static flatmap as SVG</span></a></span><a class="headerlink" href="#id12" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as PNG file."><figure class="align-default" id="id13">
-<img alt="Save a 2D static flatmap as PNG" src="../_images/sphx_glr_plot_make_png_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_make_png.html#sphx-glr-auto-examples-quickflat-plot-make-png-py"><span class="std std-ref">Save a 2D static flatmap as PNG</span></a></span><a class="headerlink" href="#id13" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Cutouts are manually generated cuts of the cortical surface to highlight a region of interest."><figure class="align-default" id="id14">
-<img alt="Plot cutouts on the flatmap" src="../_images/sphx_glr_plot_cutouts_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_cutouts.html#sphx-glr-auto-examples-quickflat-plot-cutouts-py"><span class="std std-ref">Plot cutouts on the flatmap</span></a></span><a class="headerlink" href="#id14" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="ROIs are defined as sub-layers of the roi layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg"><figure class="align-default" id="id15">
-<img alt="Plot ROIs on the flatmap" src="../_images/sphx_glr_plot_rois_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_rois.html#sphx-glr-auto-examples-quickflat-plot-rois-py"><span class="std std-ref">Plot ROIs on the flatmap</span></a></span><a class="headerlink" href="#id15" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Show lines connecting vertices on the flatmap that are actually within the same voxels in a giv..."><figure class="align-default" id="id16">
-<img alt="Plot which vertices are inside the same voxels" src="../_images/sphx_glr_plot_connected_vertices_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_connected_vertices.html#sphx-glr-auto-examples-quickflat-plot-connected-vertices-py"><span class="std std-ref">Plot which vertices are inside the same voxels</span></a></span><a class="headerlink" href="#id16" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="A convenient way to compare two flat maps (e.g., prediction performance or tuning weights) is t..."><figure class="align-default" id="id17">
-<img alt="Animate a series of volumes as a GIF" src="../_images/sphx_glr_plot_make_gif_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_make_gif.html#sphx-glr-auto-examples-quickflat-plot-make-gif-py"><span class="std std-ref">Animate a series of volumes as a GIF</span></a></span><a class="headerlink" href="#id17" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="By default, pycortex quickshow averages across the thickness of the cortex for each pixel in th..."><figure class="align-default" id="id18">
-<img alt="Ignore NaN (not-a-number) values in thickness mapping" src="../_images/sphx_glr_plot_thickness_nanmean_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_thickness_nanmean.html#sphx-glr-auto-examples-quickflat-plot-thickness-nanmean-py"><span class="std std-ref">Ignore NaN (not-a-number) values in thickness mapping</span></a></span><a class="headerlink" href="#id18" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Sometimes it is useful to create a flatmap that is zoomed in one just a single ROI. The locatio..."><figure class="align-default" id="id19">
-<img alt="Plotting a zoomed view of one ROI" src="../_images/sphx_glr_plot_zoom_to_roi_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_zoom_to_roi.html#sphx-glr-auto-examples-quickflat-plot-zoom-to-roi-py"><span class="std std-ref">Plotting a zoomed view of one ROI</span></a></span><a class="headerlink" href="#id19" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="quickflat visualizations use matplotlib to generate figure-quality 2D flatmaps."><figure class="align-default" id="id20">
-<img alt="Plot a 2D static flatmap" src="../_images/sphx_glr_plot_make_figure_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_make_figure.html#sphx-glr-auto-examples-quickflat-plot-make-figure-py"><span class="std std-ref">Plot a 2D static flatmap</span></a></span><a class="headerlink" href="#id20" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="The way flatmap plotting works in pycortex is to create different image layers (data, ROIs, sul..."><figure class="align-default" id="id21">
-<img alt="Plot with advanced compositing" src="../_images/sphx_glr_plot_advanced_compositing_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickflat/plot_advanced_compositing.html#sphx-glr-auto-examples-quickflat-plot-advanced-compositing-py"><span class="std std-ref">Plot with advanced compositing</span></a></span><a class="headerlink" href="#id21" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-clear"></div></section>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="The sulci are defined in a sub-layer of the sulci layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg."><img alt="" src="../_images/sphx_glr_plot_sulci_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_sulci.html#sphx-glr-auto-examples-quickflat-plot-sulci-py"><span class="std std-ref">Plot sulci on the flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot sulci on the flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="A dropout region is a region with very low EPI signal. In pycortex a crosshatch is used to disp..."><img alt="" src="../_images/sphx_glr_plot_dropout_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_dropout.html#sphx-glr-auto-examples-quickflat-plot-dropout-py"><span class="std std-ref">Plot dropout regions on the flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot dropout regions on the flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as PNG file."><img alt="" src="../_images/sphx_glr_plot_make_png_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_make_png.html#sphx-glr-auto-examples-quickflat-plot-make-png-py"><span class="std std-ref">Save a 2D static flatmap as PNG</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Save a 2D static flatmap as PNG</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as SVG file."><img alt="" src="../_images/sphx_glr_plot_make_svg_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_make_svg.html#sphx-glr-auto-examples-quickflat-plot-make-svg-py"><span class="std std-ref">Save a 2D static flatmap as SVG</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Save a 2D static flatmap as SVG</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Cutouts are manually generated cuts of the cortical surface to highlight a region of interest."><img alt="" src="../_images/sphx_glr_plot_cutouts_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_cutouts.html#sphx-glr-auto-examples-quickflat-plot-cutouts-py"><span class="std std-ref">Plot cutouts on the flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot cutouts on the flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="ROIs are defined as sub-layers of the roi layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg"><img alt="" src="../_images/sphx_glr_plot_rois_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_rois.html#sphx-glr-auto-examples-quickflat-plot-rois-py"><span class="std std-ref">Plot ROIs on the flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot ROIs on the flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Show lines connecting vertices on the flatmap that are actually within the same voxels in a giv..."><img alt="" src="../_images/sphx_glr_plot_connected_vertices_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_connected_vertices.html#sphx-glr-auto-examples-quickflat-plot-connected-vertices-py"><span class="std std-ref">Plot which vertices are inside the same voxels</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot which vertices are inside the same voxels</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="A convenient way to compare two flat maps (e.g., prediction performance or tuning weights) is t..."><img alt="" src="../_images/sphx_glr_plot_make_gif_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_make_gif.html#sphx-glr-auto-examples-quickflat-plot-make-gif-py"><span class="std std-ref">Animate a series of volumes as a GIF</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Animate a series of volumes as a GIF</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="By default, pycortex quickshow averages across the thickness of the cortex for each pixel in th..."><img alt="" src="../_images/sphx_glr_plot_thickness_nanmean_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_thickness_nanmean.html#sphx-glr-auto-examples-quickflat-plot-thickness-nanmean-py"><span class="std std-ref">Ignore NaN (not-a-number) values in thickness mapping</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Ignore NaN (not-a-number) values in thickness mapping</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Sometimes it is useful to create a flatmap that is zoomed in one just a single ROI. The locatio..."><img alt="" src="../_images/sphx_glr_plot_zoom_to_roi_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_zoom_to_roi.html#sphx-glr-auto-examples-quickflat-plot-zoom-to-roi-py"><span class="std std-ref">Plotting a zoomed view of one ROI</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plotting a zoomed view of one ROI</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="quickflat visualizations use matplotlib to generate figure-quality 2D flatmaps."><img alt="" src="../_images/sphx_glr_plot_make_figure_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_make_figure.html#sphx-glr-auto-examples-quickflat-plot-make-figure-py"><span class="std std-ref">Plot a 2D static flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot a 2D static flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="The way flatmap plotting works in pycortex is to create different image layers (data, ROIs, sul..."><img alt="" src="../_images/sphx_glr_plot_advanced_compositing_thumb.png" />
+<p><a class="reference internal" href="quickflat/plot_advanced_compositing.html#sphx-glr-auto-examples-quickflat-plot-advanced-compositing-py"><span class="std std-ref">Plot with advanced compositing</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot with advanced compositing</div>
+</div></div></section>
 <section id="quickstart-examples">
-<span id="sphx-glr-auto-examples-quickstart"></span><h2><a class="toc-backref" href="#id47">Quickstart Examples</a><a class="headerlink" href="#quickstart-examples" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id5" role="doc-backlink">Quickstart Examples</a><a class="headerlink" href="#quickstart-examples" title="Link to this heading">¶</a></h2>
 <p>Examples demonstrating how to get started with pycortex.</p>
-<div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain in a web viewer. In ..."><figure class="align-default" id="id22">
-<img alt="Plot Example Retinotopy in Web Viewer" src="../_images/sphx_glr_retinotopy_webgl_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickstart/retinotopy_webgl.html#sphx-glr-auto-examples-quickstart-retinotopy-webgl-py"><span class="std std-ref">Plot Example Retinotopy in Web Viewer</span></a></span><a class="headerlink" href="#id22" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Easily locating your config file and filestore locations. This comes in useful when things don&#x27;..."><figure class="align-default" id="id23">
-<img alt="Finding out where the config and filestore are" src="../_images/sphx_glr_show_config_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickstart/show_config.html#sphx-glr-auto-examples-quickstart-show-config-py"><span class="std std-ref">Finding out where the config and filestore are</span></a></span><a class="headerlink" href="#id23" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain on a flatmap. In ord..."><figure class="align-default" id="id24">
-<img alt="Plot Example Retinotopy Flatmaps" src="../_images/sphx_glr_plot_retinotopy_flatmap_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="quickstart/plot_retinotopy_flatmap.html#sphx-glr-auto-examples-quickstart-plot-retinotopy-flatmap-py"><span class="std std-ref">Plot Example Retinotopy Flatmaps</span></a></span><a class="headerlink" href="#id24" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-clear"></div></section>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain in a web viewer. In ..."><img alt="" src="../_images/sphx_glr_retinotopy_webgl_thumb.png" />
+<p><a class="reference internal" href="quickstart/retinotopy_webgl.html#sphx-glr-auto-examples-quickstart-retinotopy-webgl-py"><span class="std std-ref">Plot Example Retinotopy in Web Viewer</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot Example Retinotopy in Web Viewer</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Easily locating your config file and filestore locations. This comes in useful when things don&#x27;..."><img alt="" src="../_images/sphx_glr_show_config_thumb.png" />
+<p><a class="reference internal" href="quickstart/show_config.html#sphx-glr-auto-examples-quickstart-show-config-py"><span class="std std-ref">Finding out where the config and filestore are</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Finding out where the config and filestore are</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain on a flatmap. In ord..."><img alt="" src="../_images/sphx_glr_plot_retinotopy_flatmap_thumb.png" />
+<p><a class="reference internal" href="quickstart/plot_retinotopy_flatmap.html#sphx-glr-auto-examples-quickstart-plot-retinotopy-flatmap-py"><span class="std std-ref">Plot Example Retinotopy Flatmaps</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot Example Retinotopy Flatmaps</div>
+</div></div></section>
 <section id="surface-analysis-examples">
-<span id="sphx-glr-auto-examples-surface-analyses"></span><h2><a class="toc-backref" href="#id48">Surface Analysis Examples</a><a class="headerlink" href="#surface-analysis-examples" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id6" role="doc-backlink">Surface Analysis Examples</a><a class="headerlink" href="#surface-analysis-examples" title="Link to this heading">¶</a></h2>
 <p>Examples demonstrating operations and analyses done on brain surfaces.</p>
-<div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si..."><figure class="align-default" id="id25">
-<img alt="Tissot's Indicatrix" src="../_images/sphx_glr_plot_tissots_indicatrix_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="surface_analyses/plot_tissots_indicatrix.html#sphx-glr-auto-examples-surface-analyses-plot-tissots-indicatrix-py"><span class="std std-ref">Tissot’s Indicatrix</span></a></span><a class="headerlink" href="#id25" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="This will plot a geodesic path between two vertices on the cortical surface. This path is based..."><figure class="align-default" id="id26">
-<img alt="Plotting Geodesic Paths" src="../_images/sphx_glr_plot_geodesic_path_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="surface_analyses/plot_geodesic_path.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-path-py"><span class="std std-ref">Plotting Geodesic Paths</span></a></span><a class="headerlink" href="#id26" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="This plots the distances (in mm) between a vertex or set of vertices and all other vertices on ..."><figure class="align-default" id="id27">
-<img alt="Plotting Geodesic Distances" src="../_images/sphx_glr_plot_geodesic_distance_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="surface_analyses/plot_geodesic_distance.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-distance-py"><span class="std std-ref">Plotting Geodesic Distances</span></a></span><a class="headerlink" href="#id27" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si..."><figure class="align-default" id="id28">
-<img alt="Flatmap Distortion" src="../_images/sphx_glr_plot_flatmap_distortion_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="surface_analyses/plot_flatmap_distortion.html#sphx-glr-auto-examples-surface-analyses-plot-flatmap-distortion-py"><span class="std std-ref">Flatmap Distortion</span></a></span><a class="headerlink" href="#id28" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Subsurfaces can be used for efficient operations on subsets of cortical surface"><figure class="align-default" id="id29">
-<img alt="Plot and Use Subsurface Tools" src="../_images/sphx_glr_plot_subsurfaces_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="surface_analyses/plot_subsurfaces.html#sphx-glr-auto-examples-surface-analyses-plot-subsurfaces-py"><span class="std std-ref">Plot and Use Subsurface Tools</span></a></span><a class="headerlink" href="#id29" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to interpolate data from a sparse collection of points to all the p..."><figure class="align-default" id="id30">
-<img alt="Interpolate Data" src="../_images/sphx_glr_plot_interpolate_data_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="surface_analyses/plot_interpolate_data.html#sphx-glr-auto-examples-surface-analyses-plot-interpolate-data-py"><span class="std std-ref">Interpolate Data</span></a></span><a class="headerlink" href="#id30" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-clear"></div></section>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si..."><img alt="" src="../_images/sphx_glr_plot_tissots_indicatrix_thumb.png" />
+<p><a class="reference internal" href="surface_analyses/plot_tissots_indicatrix.html#sphx-glr-auto-examples-surface-analyses-plot-tissots-indicatrix-py"><span class="std std-ref">Tissot’s Indicatrix</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Tissot's Indicatrix</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This will plot a geodesic path between two vertices on the cortical surface. This path is based..."><img alt="" src="../_images/sphx_glr_plot_geodesic_path_thumb.png" />
+<p><a class="reference internal" href="surface_analyses/plot_geodesic_path.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-path-py"><span class="std std-ref">Plotting Geodesic Paths</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plotting Geodesic Paths</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots the distances (in mm) between a vertex or set of vertices and all other vertices on ..."><img alt="" src="../_images/sphx_glr_plot_geodesic_distance_thumb.png" />
+<p><a class="reference internal" href="surface_analyses/plot_geodesic_distance.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-distance-py"><span class="std std-ref">Plotting Geodesic Distances</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plotting Geodesic Distances</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si..."><img alt="" src="../_images/sphx_glr_plot_flatmap_distortion_thumb.png" />
+<p><a class="reference internal" href="surface_analyses/plot_flatmap_distortion.html#sphx-glr-auto-examples-surface-analyses-plot-flatmap-distortion-py"><span class="std std-ref">Flatmap Distortion</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Flatmap Distortion</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Subsurfaces can be used for efficient operations on subsets of cortical surface"><img alt="" src="../_images/sphx_glr_plot_subsurfaces_thumb.png" />
+<p><a class="reference internal" href="surface_analyses/plot_subsurfaces.html#sphx-glr-auto-examples-surface-analyses-plot-subsurfaces-py"><span class="std std-ref">Plot and Use Subsurface Tools</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot and Use Subsurface Tools</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to interpolate data from a sparse collection of points to all the p..."><img alt="" src="../_images/sphx_glr_plot_interpolate_data_thumb.png" />
+<p><a class="reference internal" href="surface_analyses/plot_interpolate_data.html#sphx-glr-auto-examples-surface-analyses-plot-interpolate-data-py"><span class="std std-ref">Interpolate Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Interpolate Data</div>
+</div></div></section>
 <section id="utility-examples">
-<span id="sphx-glr-auto-examples-utils"></span><h2><a class="toc-backref" href="#id49">Utility Examples</a><a class="headerlink" href="#utility-examples" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id7" role="doc-backlink">Utility Examples</a><a class="headerlink" href="#utility-examples" title="Link to this heading">¶</a></h2>
 <p>Examples demonstrating how to do all sorts of beautiful things using pycortex.</p>
-<div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to get the vertices that are inside an ROI that was defined in the ..."><figure class="align-default" id="id31">
-<img alt="Get Vertices for an ROI" src="../_images/sphx_glr_plot_get_roi_vertices_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="utils/plot_get_roi_vertices.html#sphx-glr-auto-examples-utils-plot-get-roi-vertices-py"><span class="std std-ref">Get Vertices for an ROI</span></a></span><a class="headerlink" href="#id31" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="The utility function get_vox_dist returns the distance from each voxel in some space to the nea..."><figure class="align-default" id="id32">
-<img alt="Voxel distance from surface" src="../_images/sphx_glr_plot_voxel_distance_from_surface_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="utils/plot_voxel_distance_from_surface.html#sphx-glr-auto-examples-utils-plot-voxel-distance-from-surface-py"><span class="std std-ref">Voxel distance from surface</span></a></span><a class="headerlink" href="#id32" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="The function mosaic plots all of the slices in a volume in a matplotlib figure. Good for quick ..."><figure class="align-default" id="id33">
-<img alt="Mosaic plot" src="../_images/sphx_glr_plot_mosaic_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="utils/plot_mosaic.html#sphx-glr-auto-examples-utils-plot-mosaic-py"><span class="std std-ref">Mosaic plot</span></a></span><a class="headerlink" href="#id33" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s..."><figure class="align-default" id="id34">
-<img alt="Transform from Subject to MNI Space" src="../_images/sphx_glr_subject_to_mni_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="utils/subject_to_mni.html#sphx-glr-auto-examples-utils-subject-to-mni-py"><span class="std std-ref">Transform from Subject to MNI Space</span></a></span><a class="headerlink" href="#id34" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Get proportion of each voxel that exists within a named ROI (this  constitutes a probability ma..."><figure class="align-default" id="id35">
-<img alt="Get ROI Voxel Mask" src="../_images/sphx_glr_plot_roi_voxel_mask_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="utils/plot_roi_voxel_mask.html#sphx-glr-auto-examples-utils-plot-roi-voxel-mask-py"><span class="std std-ref">Get ROI Voxel Mask</span></a></span><a class="headerlink" href="#id35" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s..."><figure class="align-default" id="id36">
-<img alt="Transform from MNI to Subject Space" src="../_images/sphx_glr_mni_to_subject_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="utils/mni_to_subject.html#sphx-glr-auto-examples-utils-mni-to-subject-py"><span class="std std-ref">Transform from MNI to Subject Space</span></a></span><a class="headerlink" href="#id36" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="The function cortex.export.plot_panels plots a number of 3d views of a given volume, in the sam..."><figure class="align-default" id="id37">
-<img alt="Multi-panels figures" src="../_images/sphx_glr_multi_panels_plots_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="utils/multi_panels_plots.html#sphx-glr-auto-examples-utils-multi-panels-plots-py"><span class="std std-ref">Multi-panels figures</span></a></span><a class="headerlink" href="#id37" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Create an index volume (similar to the aseg masks in freesurfer) with a different  integer inde..."><figure class="align-default" id="id38">
-<img alt="Get ROI Index Volume" src="../_images/sphx_glr_plot_roi_voxel_index_volume_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="utils/plot_roi_voxel_index_volume.html#sphx-glr-auto-examples-utils-plot-roi-voxel-index-volume-py"><span class="std std-ref">Get ROI Index Volume</span></a></span><a class="headerlink" href="#id38" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-clear"></div></section>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to get the vertices that are inside an ROI that was defined in the ..."><img alt="" src="../_images/sphx_glr_plot_get_roi_vertices_thumb.png" />
+<p><a class="reference internal" href="utils/plot_get_roi_vertices.html#sphx-glr-auto-examples-utils-plot-get-roi-vertices-py"><span class="std std-ref">Get Vertices for an ROI</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Get Vertices for an ROI</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="The utility function get_vox_dist returns the distance from each voxel in some space to the nea..."><img alt="" src="../_images/sphx_glr_plot_voxel_distance_from_surface_thumb.png" />
+<p><a class="reference internal" href="utils/plot_voxel_distance_from_surface.html#sphx-glr-auto-examples-utils-plot-voxel-distance-from-surface-py"><span class="std std-ref">Voxel distance from surface</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Voxel distance from surface</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="The function mosaic plots all of the slices in a volume in a matplotlib figure. Good for quick ..."><img alt="" src="../_images/sphx_glr_plot_mosaic_thumb.png" />
+<p><a class="reference internal" href="utils/plot_mosaic.html#sphx-glr-auto-examples-utils-plot-mosaic-py"><span class="std std-ref">Mosaic plot</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Mosaic plot</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s..."><img alt="" src="../_images/sphx_glr_subject_to_mni_thumb.png" />
+<p><a class="reference internal" href="utils/subject_to_mni.html#sphx-glr-auto-examples-utils-subject-to-mni-py"><span class="std std-ref">Transform from Subject to MNI Space</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Transform from Subject to MNI Space</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Get proportion of each voxel that exists within a named ROI (this  constitutes a probability ma..."><img alt="" src="../_images/sphx_glr_plot_roi_voxel_mask_thumb.png" />
+<p><a class="reference internal" href="utils/plot_roi_voxel_mask.html#sphx-glr-auto-examples-utils-plot-roi-voxel-mask-py"><span class="std std-ref">Get ROI Voxel Mask</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Get ROI Voxel Mask</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s..."><img alt="" src="../_images/sphx_glr_mni_to_subject_thumb.png" />
+<p><a class="reference internal" href="utils/mni_to_subject.html#sphx-glr-auto-examples-utils-mni-to-subject-py"><span class="std std-ref">Transform from MNI to Subject Space</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Transform from MNI to Subject Space</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="The function cortex.export.plot_panels plots a number of 3d views of a given volume, in the sam..."><img alt="" src="../_images/sphx_glr_multi_panels_plots_thumb.png" />
+<p><a class="reference internal" href="utils/multi_panels_plots.html#sphx-glr-auto-examples-utils-multi-panels-plots-py"><span class="std std-ref">Multi-panels figures</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Multi-panels figures</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Create an index volume (similar to the aseg masks in freesurfer) with a different  integer inde..."><img alt="" src="../_images/sphx_glr_plot_roi_voxel_index_volume_thumb.png" />
+<p><a class="reference internal" href="utils/plot_roi_voxel_index_volume.html#sphx-glr-auto-examples-utils-plot-roi-voxel-index-volume-py"><span class="std std-ref">Get ROI Index Volume</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Get ROI Index Volume</div>
+</div></div></section>
 <section id="webgl-examples">
-<span id="sphx-glr-auto-examples-webgl"></span><h2><a class="toc-backref" href="#id50">WebGL Examples</a><a class="headerlink" href="#webgl-examples" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id8" role="doc-backlink">WebGL Examples</a><a class="headerlink" href="#webgl-examples" title="Link to this heading">¶</a></h2>
 <p>Examples demonstrating how to make beautiful interactive 3-D viewers</p>
-<div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser"><figure class="align-default" id="id39">
-<img alt="Create a 3D WebGL Viewer" src="../_images/sphx_glr_single_dataset_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="webgl/single_dataset.html#sphx-glr-auto-examples-webgl-single-dataset-py"><span class="std std-ref">Create a 3D WebGL Viewer</span></a></span><a class="headerlink" href="#id39" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="A static viewer is a brain viewer that exists permanently on a filesystem"><figure class="align-default" id="id40">
-<img alt="Create a static viewer" src="../_images/sphx_glr_static_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="webgl/static.html#sphx-glr-auto-examples-webgl-static-py"><span class="std std-ref">Create a static viewer</span></a></span><a class="headerlink" href="#id40" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ..."><figure class="align-default" id="id41">
-<img alt="Dynamic viewer with html template" src="../_images/sphx_glr_dynamic_with_custom_template_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="webgl/dynamic_with_custom_template.html#sphx-glr-auto-examples-webgl-dynamic-with-custom-template-py"><span class="std std-ref">Dynamic viewer with html template</span></a></span><a class="headerlink" href="#id41" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ..."><figure class="align-default" id="id42">
-<img alt="Static viewer with html template" src="../_images/sphx_glr_static_with_custom_template_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="webgl/static_with_custom_template.html#sphx-glr-auto-examples-webgl-static-with-custom-template-py"><span class="std std-ref">Static viewer with html template</span></a></span><a class="headerlink" href="#id42" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser"><figure class="align-default" id="id43">
-<img alt="Create a 3D WebGL Viewer with Multiple Datasets" src="../_images/sphx_glr_multiple_datasets_thumb.png" />
-<figcaption>
-<p><span class="caption-text"><a class="reference internal" href="webgl/multiple_datasets.html#sphx-glr-auto-examples-webgl-multiple-datasets-py"><span class="std std-ref">Create a 3D WebGL Viewer with Multiple Datasets</span></a></span><a class="headerlink" href="#id43" title="Permalink to this image">¶</a></p>
-</figcaption>
-</figure>
-</div><div class="toctree-wrapper compound">
-</div>
-<div class="sphx-glr-clear"></div><div class="sphx-glr-footer class sphx-glr-footer-gallery docutils container">
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser"><img alt="" src="../_images/sphx_glr_single_dataset_thumb.png" />
+<p><a class="reference internal" href="webgl/single_dataset.html#sphx-glr-auto-examples-webgl-single-dataset-py"><span class="std std-ref">Create a 3D WebGL Viewer</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Create a 3D WebGL Viewer</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="A static viewer is a brain viewer that exists permanently on a filesystem"><img alt="" src="../_images/sphx_glr_static_thumb.png" />
+<p><a class="reference internal" href="webgl/static.html#sphx-glr-auto-examples-webgl-static-py"><span class="std std-ref">Create a static viewer</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Create a static viewer</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ..."><img alt="" src="../_images/sphx_glr_dynamic_with_custom_template_thumb.png" />
+<p><a class="reference internal" href="webgl/dynamic_with_custom_template.html#sphx-glr-auto-examples-webgl-dynamic-with-custom-template-py"><span class="std std-ref">Dynamic viewer with html template</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Dynamic viewer with html template</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ..."><img alt="" src="../_images/sphx_glr_static_with_custom_template_thumb.png" />
+<p><a class="reference internal" href="webgl/static_with_custom_template.html#sphx-glr-auto-examples-webgl-static-with-custom-template-py"><span class="std std-ref">Static viewer with html template</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Static viewer with html template</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser"><img alt="" src="../_images/sphx_glr_multiple_datasets_thumb.png" />
+<p><a class="reference internal" href="webgl/multiple_datasets.html#sphx-glr-auto-examples-webgl-multiple-datasets-py"><span class="std std-ref">Create a 3D WebGL Viewer with Multiple Datasets</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Create a 3D WebGL Viewer with Multiple Datasets</div>
+</div></div><div class="toctree-wrapper compound">
+</div>
+<div class="sphx-glr-footer sphx-glr-footer-gallery docutils container">
 <div class="sphx-glr-download sphx-glr-download-python docutils container">
 <p><a class="reference download internal" download="" href="../_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">all</span> <span class="pre">examples</span> <span class="pre">in</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">auto_examples_python.zip</span></code></a></p>
 </div>
@@ -470,68 +264,22 @@ <h3>Navigation</h3>
 </ul>
 <ul class="current">
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Example Gallery</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="#datasets-examples">Datasets Examples</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="datasets/plot_dataset_arithmetic.html">Dataset Arithmetic</a></li>
-<li class="toctree-l3"><a class="reference internal" href="datasets/plot_volume_to_vertex.html">Map from Volume to Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="datasets/plot_volume.html">Plot Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="datasets/plot_vertex.html">Plot Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="datasets/plot_vertex2D.html">Plot 2D Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="datasets/plot_volume2D.html">Plot 2D Volume Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="datasets/plot_vertexRGB.html">Plot RGB Vertex Data</a></li>
-<li class="toctree-l3"><a class="reference internal" href="datasets/plot_volumeRGB.html">Plot RGB Volume Data</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="#importing-surfaces-examples">Importing Surfaces Examples</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="import_surface/import_fmriprep.html">Import fmriprep output</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="#quickflat-examples">Quickflat Examples</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickflat/plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="#quickstart-examples">Quickstart Examples</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="quickstart/retinotopy_webgl.html">Plot Example Retinotopy in Web Viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickstart/show_config.html">Finding out where the config and filestore are</a></li>
-<li class="toctree-l3"><a class="reference internal" href="quickstart/plot_retinotopy_flatmap.html">Plot Example Retinotopy Flatmaps</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="#surface-analysis-examples">Surface Analysis Examples</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="surface_analyses/plot_tissots_indicatrix.html">Tissot’s Indicatrix</a></li>
-<li class="toctree-l3"><a class="reference internal" href="surface_analyses/plot_geodesic_path.html">Plotting Geodesic Paths</a></li>
-<li class="toctree-l3"><a class="reference internal" href="surface_analyses/plot_geodesic_distance.html">Plotting Geodesic Distances</a></li>
-<li class="toctree-l3"><a class="reference internal" href="surface_analyses/plot_flatmap_distortion.html">Flatmap Distortion</a></li>
-<li class="toctree-l3"><a class="reference internal" href="surface_analyses/plot_subsurfaces.html">Plot and Use Subsurface Tools</a></li>
-<li class="toctree-l3"><a class="reference internal" href="surface_analyses/plot_interpolate_data.html">Interpolate Data</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="#utility-examples">Utility Examples</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="utils/plot_get_roi_vertices.html">Get Vertices for an ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="utils/plot_voxel_distance_from_surface.html">Voxel distance from surface</a></li>
-<li class="toctree-l3"><a class="reference internal" href="utils/plot_mosaic.html">Mosaic plot</a></li>
-<li class="toctree-l3"><a class="reference internal" href="utils/subject_to_mni.html">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="utils/plot_roi_voxel_mask.html">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3"><a class="reference internal" href="utils/mni_to_subject.html">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="utils/multi_panels_plots.html">Multi-panels figures</a></li>
-<li class="toctree-l3"><a class="reference internal" href="utils/plot_roi_voxel_index_volume.html">Get ROI Index Volume</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#examples-with-fsaverage">Examples with fsaverage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#importing-surfaces-examples">Importing Surfaces Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#quickflat-examples">Quickflat Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#quickstart-examples">Quickstart Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#utility-examples">Utility Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#webgl-examples">WebGL Examples</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="webgl/single_dataset.html">Create a 3D WebGL Viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="webgl/static.html">Create a static viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="webgl/dynamic_with_custom_template.html">Dynamic viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="webgl/static_with_custom_template.html">Static viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="webgl/multiple_datasets.html">Create a 3D WebGL Viewer with Multiple Datasets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="webgl/index.html">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -546,11 +294,11 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../index.html">Documentation overview</a><ul>
       <li>Previous: <a href="../colormaps.html" title="previous chapter">Colormaps</a></li>
-      <li>Next: <a href="datasets/plot_dataset_arithmetic.html" title="next chapter">Dataset Arithmetic</a></li>
+      <li>Next: <a href="datasets/index.html" title="next chapter">Datasets Examples</a></li>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -558,8 +306,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -573,11 +321,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../_sources/auto_examples/index.rst.txt"
diff --git a/auto_examples/quickflat/index.html b/auto_examples/quickflat/index.html
new file mode 100644
index 000000000..4c9a6119d
--- /dev/null
+++ b/auto_examples/quickflat/index.html
@@ -0,0 +1,191 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Quickflat Examples &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="Plot sulci on the flatmap" href="plot_sulci.html" />
+    <link rel="prev" title="Import fmriprep output" href="../import_surface/import_fmriprep.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="quickflat-examples">
+<span id="sphx-glr-auto-examples-quickflat"></span><h1>Quickflat Examples<a class="headerlink" href="#quickflat-examples" title="Link to this heading">¶</a></h1>
+<p>Examples demonstrating how to create flatmaps.</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="The sulci are defined in a sub-layer of the sulci layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg."><img alt="" src="../../_images/sphx_glr_plot_sulci_thumb.png" />
+<p><a class="reference internal" href="plot_sulci.html#sphx-glr-auto-examples-quickflat-plot-sulci-py"><span class="std std-ref">Plot sulci on the flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot sulci on the flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="A dropout region is a region with very low EPI signal. In pycortex a crosshatch is used to disp..."><img alt="" src="../../_images/sphx_glr_plot_dropout_thumb.png" />
+<p><a class="reference internal" href="plot_dropout.html#sphx-glr-auto-examples-quickflat-plot-dropout-py"><span class="std std-ref">Plot dropout regions on the flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot dropout regions on the flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as PNG file."><img alt="" src="../../_images/sphx_glr_plot_make_png_thumb.png" />
+<p><a class="reference internal" href="plot_make_png.html#sphx-glr-auto-examples-quickflat-plot-make-png-py"><span class="std std-ref">Save a 2D static flatmap as PNG</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Save a 2D static flatmap as PNG</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Plot a 2D static flatmap and save it as SVG file."><img alt="" src="../../_images/sphx_glr_plot_make_svg_thumb.png" />
+<p><a class="reference internal" href="plot_make_svg.html#sphx-glr-auto-examples-quickflat-plot-make-svg-py"><span class="std std-ref">Save a 2D static flatmap as SVG</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Save a 2D static flatmap as SVG</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Cutouts are manually generated cuts of the cortical surface to highlight a region of interest."><img alt="" src="../../_images/sphx_glr_plot_cutouts_thumb.png" />
+<p><a class="reference internal" href="plot_cutouts.html#sphx-glr-auto-examples-quickflat-plot-cutouts-py"><span class="std std-ref">Plot cutouts on the flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot cutouts on the flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="ROIs are defined as sub-layers of the roi layer in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg"><img alt="" src="../../_images/sphx_glr_plot_rois_thumb.png" />
+<p><a class="reference internal" href="plot_rois.html#sphx-glr-auto-examples-quickflat-plot-rois-py"><span class="std std-ref">Plot ROIs on the flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot ROIs on the flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Show lines connecting vertices on the flatmap that are actually within the same voxels in a giv..."><img alt="" src="../../_images/sphx_glr_plot_connected_vertices_thumb.png" />
+<p><a class="reference internal" href="plot_connected_vertices.html#sphx-glr-auto-examples-quickflat-plot-connected-vertices-py"><span class="std std-ref">Plot which vertices are inside the same voxels</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot which vertices are inside the same voxels</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="A convenient way to compare two flat maps (e.g., prediction performance or tuning weights) is t..."><img alt="" src="../../_images/sphx_glr_plot_make_gif_thumb.png" />
+<p><a class="reference internal" href="plot_make_gif.html#sphx-glr-auto-examples-quickflat-plot-make-gif-py"><span class="std std-ref">Animate a series of volumes as a GIF</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Animate a series of volumes as a GIF</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="By default, pycortex quickshow averages across the thickness of the cortex for each pixel in th..."><img alt="" src="../../_images/sphx_glr_plot_thickness_nanmean_thumb.png" />
+<p><a class="reference internal" href="plot_thickness_nanmean.html#sphx-glr-auto-examples-quickflat-plot-thickness-nanmean-py"><span class="std std-ref">Ignore NaN (not-a-number) values in thickness mapping</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Ignore NaN (not-a-number) values in thickness mapping</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Sometimes it is useful to create a flatmap that is zoomed in one just a single ROI. The locatio..."><img alt="" src="../../_images/sphx_glr_plot_zoom_to_roi_thumb.png" />
+<p><a class="reference internal" href="plot_zoom_to_roi.html#sphx-glr-auto-examples-quickflat-plot-zoom-to-roi-py"><span class="std std-ref">Plotting a zoomed view of one ROI</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plotting a zoomed view of one ROI</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="quickflat visualizations use matplotlib to generate figure-quality 2D flatmaps."><img alt="" src="../../_images/sphx_glr_plot_make_figure_thumb.png" />
+<p><a class="reference internal" href="plot_make_figure.html#sphx-glr-auto-examples-quickflat-plot-make-figure-py"><span class="std std-ref">Plot a 2D static flatmap</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot a 2D static flatmap</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="The way flatmap plotting works in pycortex is to create different image layers (data, ROIs, sul..."><img alt="" src="../../_images/sphx_glr_plot_advanced_compositing_thumb.png" />
+<p><a class="reference internal" href="plot_advanced_compositing.html#sphx-glr-auto-examples-quickflat-plot-advanced-compositing-py"><span class="std std-ref">Plot with advanced compositing</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot with advanced compositing</div>
+</div></div><div class="toctree-wrapper compound">
+</div>
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
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+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
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+  <li><a href="../../index.html">Documentation overview</a><ul>
+  <li><a href="../index.html">Example Gallery</a><ul>
+      <li>Previous: <a href="../import_surface/import_fmriprep.html" title="previous chapter">Import fmriprep output</a></li>
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\ No newline at end of file
diff --git a/auto_examples/quickflat/plot_advanced_compositing.html b/auto_examples/quickflat/plot_advanced_compositing.html
index 1a77c2f31..a0ede28fb 100644
--- a/auto_examples/quickflat/plot_advanced_compositing.html
+++ b/auto_examples/quickflat/plot_advanced_compositing.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot with advanced compositing &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot with advanced compositing &#8212; pycortex 1.2.8 documentation</title>
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     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Plot Example Retinotopy in Web Viewer" href="../quickstart/retinotopy_webgl.html" />
+    <link rel="next" title="Quickstart Examples" href="../quickstart/index.html" />
     <link rel="prev" title="Plot a 2D static flatmap" href="plot_make_figure.html" />
    
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+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,35 +38,28 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-advanced-compositing-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-advanced-compositing-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-with-advanced-compositing">
-<span id="sphx-glr-auto-examples-quickflat-plot-advanced-compositing-py"></span><h1>Plot with advanced compositing<a class="headerlink" href="#plot-with-advanced-compositing" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-advanced-compositing-py"></span><h1>Plot with advanced compositing<a class="headerlink" href="#plot-with-advanced-compositing" title="Link to this heading">¶</a></h1>
 <p>The way flatmap plotting works in pycortex is to create different image
 layers (data, ROIs, sulci, etc) and overlay each on top of the other.
 Usually, quickflat.make_figure() handles all this for you, but each
 layer can be manipulated independently for fancier effects with the
 quickflat.composite sub-module.</p>
-<img src="../../_images/sphx_glr_plot_advanced_compositing_001.png" srcset="../../_images/sphx_glr_plot_advanced_compositing_001.png" alt="plot advanced compositing" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
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+<img src="../../_images/sphx_glr_plot_advanced_compositing_001.png" srcset="../../_images/sphx_glr_plot_advanced_compositing_001.png" alt="plot advanced compositing" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
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 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
 <span class="c1"># Create a random volume</span>
@@ -104,14 +96,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
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-<p><a class="reference download internal" download="" href="../../_downloads/701ae012d88c539ecc33405291ee7710/plot_advanced_compositing.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_advanced_compositing.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 3.674 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-advanced-compositing-py">
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/701ae012d88c539ecc33405291ee7710/plot_advanced_compositing.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_advanced_compositing.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -152,26 +144,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
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 </ul>
@@ -184,13 +173,15 @@ <h3>Related Topics</h3>
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+  <li><a href="index.html">Quickflat Examples</a><ul>
       <li>Previous: <a href="plot_make_figure.html" title="previous chapter">Plot a 2D static flatmap</a></li>
-      <li>Next: <a href="../quickstart/retinotopy_webgl.html" title="next chapter">Plot Example Retinotopy in Web Viewer</a></li>
+      <li>Next: <a href="../quickstart/index.html" title="next chapter">Quickstart Examples</a></li>
+  </ul></li>
   </ul></li>
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+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -198,8 +189,8 @@ <h3 id="searchlabel">Quick search</h3>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -213,11 +204,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_advanced_compositing.rst.txt"
diff --git a/auto_examples/quickflat/plot_connected_vertices.html b/auto_examples/quickflat/plot_connected_vertices.html
index d643a5913..5ef3592db 100644
--- a/auto_examples/quickflat/plot_connected_vertices.html
+++ b/auto_examples/quickflat/plot_connected_vertices.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
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@@ -24,8 +22,9 @@
    
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,21 +38,18 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-connected-vertices-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-connected-vertices-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-which-vertices-are-inside-the-same-voxels">
-<span id="sphx-glr-auto-examples-quickflat-plot-connected-vertices-py"></span><h1>Plot which vertices are inside the same voxels<a class="headerlink" href="#plot-which-vertices-are-inside-the-same-voxels" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-connected-vertices-py"></span><h1>Plot which vertices are inside the same voxels<a class="headerlink" href="#plot-which-vertices-are-inside-the-same-voxels" title="Link to this heading">¶</a></h1>
 <p>Show lines connecting vertices on the flatmap that are actually within the same
 voxels in a given scan.</p>
 <p>Here, we used advanced compositing to be explicit about display options for the
 connecting lines.</p>
-<img src="../../_images/sphx_glr_plot_connected_vertices_001.png" srcset="../../_images/sphx_glr_plot_connected_vertices_001.png" alt="plot connected vertices" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Generating a flatmap cache
-Failed to get connection
-** (inkscape:5268): CRITICAL **: 01:28:18.292: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5268): CRITICAL **: 01:28:18.293: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5268): CRITICAL **: 01:28:18.293: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_connected_vertices_001.png" srcset="../../_images/sphx_glr_plot_connected_vertices_001.png" alt="plot connected vertices" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Generating a flatmap cache
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 Shared voxel array not found, generating...
 Caching mapper...
 </pre></div>
@@ -61,7 +57,7 @@
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
@@ -79,14 +75,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 2 minutes  3.094 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-connected-vertices-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/95f5839285364316848ed37387ec0724/plot_connected_vertices.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_connected_vertices.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (1 minutes 6.515 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-connected-vertices-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/3dca224e23400dbb33007465a7b359a6/plot_connected_vertices.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_connected_vertices.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/95f5839285364316848ed37387ec0724/plot_connected_vertices.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_connected_vertices.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -127,26 +123,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -159,13 +152,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Quickflat Examples</a><ul>
       <li>Previous: <a href="plot_rois.html" title="previous chapter">Plot ROIs on the flatmap</a></li>
       <li>Next: <a href="plot_make_gif.html" title="next chapter">Animate a series of volumes as a GIF</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -173,8 +168,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -188,11 +183,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_connected_vertices.rst.txt"
diff --git a/auto_examples/quickflat/plot_cutouts.html b/auto_examples/quickflat/plot_cutouts.html
index 7e7e7f78d..59e57a64c 100644
--- a/auto_examples/quickflat/plot_cutouts.html
+++ b/auto_examples/quickflat/plot_cutouts.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot cutouts on the flatmap &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot cutouts on the flatmap &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot ROIs on the flatmap" href="plot_rois.html" />
-    <link rel="prev" title="Save a 2D static flatmap as PNG" href="plot_make_png.html" />
+    <link rel="prev" title="Save a 2D static flatmap as SVG" href="plot_make_svg.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,32 +38,27 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-cutouts-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-cutouts-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-cutouts-on-the-flatmap">
-<span id="sphx-glr-auto-examples-quickflat-plot-cutouts-py"></span><h1>Plot cutouts on the flatmap<a class="headerlink" href="#plot-cutouts-on-the-flatmap" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-cutouts-py"></span><h1>Plot cutouts on the flatmap<a class="headerlink" href="#plot-cutouts-on-the-flatmap" title="Link to this heading">¶</a></h1>
 <p>Cutouts are manually generated cuts of the cortical surface to highlight
 a region of interest.</p>
 <p>Cutouts are defined as sub-layers of the <cite>cutouts</cite> layer
 in &lt;filestore&gt;/&lt;subject&gt;/overlays.svg.</p>
 <p>The parameter <cite>cutout</cite> of the <cite>quickflat.make_figure</cite> method should be the
 name of the flatmap cutout defined in the <cite>overlays.svg</cite> file.</p>
-<img src="../../_images/sphx_glr_plot_cutouts_001.png" srcset="../../_images/sphx_glr_plot_cutouts_001.png" alt="plot cutouts" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
-** (inkscape:5248): CRITICAL **: 01:28:04.376: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5248): CRITICAL **: 01:28:04.376: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5248): CRITICAL **: 01:28:04.376: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
-Failed to get connection
-** (inkscape:5251): CRITICAL **: 01:28:05.243: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5251): CRITICAL **: 01:28:05.243: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5251): CRITICAL **: 01:28:05.243: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_cutouts_001.png" srcset="../../_images/sphx_glr_plot_cutouts_001.png" alt="plot cutouts" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
 
@@ -81,14 +75,14 @@
                                  <span class="n">cutout</span><span class="o">=</span><span class="n">cutout_name</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  2.057 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-cutouts-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/ee49f7cc8bb2b8725352082af9591e0c/plot_cutouts.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_cutouts.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 1.811 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-cutouts-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/774806b543a93da25908653d426c15c1/plot_cutouts.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_cutouts.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/ee49f7cc8bb2b8725352082af9591e0c/plot_cutouts.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_cutouts.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
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@@ -129,26 +123,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -161,13 +152,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="plot_make_png.html" title="previous chapter">Save a 2D static flatmap as PNG</a></li>
+  <li><a href="index.html">Quickflat Examples</a><ul>
+      <li>Previous: <a href="plot_make_svg.html" title="previous chapter">Save a 2D static flatmap as SVG</a></li>
       <li>Next: <a href="plot_rois.html" title="next chapter">Plot ROIs on the flatmap</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -175,8 +168,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -190,11 +183,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_cutouts.rst.txt"
diff --git a/auto_examples/quickflat/plot_dropout.html b/auto_examples/quickflat/plot_dropout.html
index 755a4acdf..fe3e36ea9 100644
--- a/auto_examples/quickflat/plot_dropout.html
+++ b/auto_examples/quickflat/plot_dropout.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot dropout regions on the flatmap &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot dropout regions on the flatmap &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Save a 2D static flatmap as SVG" href="plot_make_svg.html" />
+    <link rel="next" title="Save a 2D static flatmap as PNG" href="plot_make_png.html" />
     <link rel="prev" title="Plot sulci on the flatmap" href="plot_sulci.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-dropout-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-dropout-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-dropout-regions-on-the-flatmap">
-<span id="sphx-glr-auto-examples-quickflat-plot-dropout-py"></span><h1>Plot dropout regions on the flatmap<a class="headerlink" href="#plot-dropout-regions-on-the-flatmap" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-dropout-py"></span><h1>Plot dropout regions on the flatmap<a class="headerlink" href="#plot-dropout-regions-on-the-flatmap" title="Link to this heading">¶</a></h1>
 <p>A dropout region is a region with very low EPI signal. In pycortex a
 crosshatch is used to display such dropout regions.</p>
 <p>The crosshatches are created using the reference nifti image file
@@ -60,17 +59,14 @@
 normdata = (1 - normdata) ** power</p>
 </div></blockquote>
 </div></blockquote>
-<img src="../../_images/sphx_glr_plot_dropout_001.png" srcset="../../_images/sphx_glr_plot_dropout_001.png" alt="plot dropout" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
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-** (inkscape:5219): CRITICAL **: 01:27:52.317: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_dropout_001.png" srcset="../../_images/sphx_glr_plot_dropout_001.png" alt="plot dropout" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
 
@@ -84,14 +80,14 @@
                                  <span class="n">with_dropout</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 </pre></div>
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-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  3.200 seconds)</p>
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-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/50f7ff32b015808bb6f782d90f74e737/plot_dropout.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_dropout.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 2.353 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-dropout-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/38bd34ef15da8508933ae951daa9dfc6/plot_dropout.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_dropout.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/50f7ff32b015808bb6f782d90f74e737/plot_dropout.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_dropout.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -132,26 +128,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -164,13 +157,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Quickflat Examples</a><ul>
       <li>Previous: <a href="plot_sulci.html" title="previous chapter">Plot sulci on the flatmap</a></li>
-      <li>Next: <a href="plot_make_svg.html" title="next chapter">Save a 2D static flatmap as SVG</a></li>
+      <li>Next: <a href="plot_make_png.html" title="next chapter">Save a 2D static flatmap as PNG</a></li>
+  </ul></li>
   </ul></li>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -178,8 +173,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -193,11 +188,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_dropout.rst.txt"
diff --git a/auto_examples/quickflat/plot_make_figure.html b/auto_examples/quickflat/plot_make_figure.html
index 1db0d9509..a05ce2932 100644
--- a/auto_examples/quickflat/plot_make_figure.html
+++ b/auto_examples/quickflat/plot_make_figure.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot a 2D static flatmap &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot a 2D static flatmap &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot with advanced compositing" href="plot_advanced_compositing.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-make-figure-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-make-figure-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-a-2d-static-flatmap">
-<span id="sphx-glr-auto-examples-quickflat-plot-make-figure-py"></span><h1>Plot a 2D static flatmap<a class="headerlink" href="#plot-a-2d-static-flatmap" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-make-figure-py"></span><h1>Plot a 2D static flatmap<a class="headerlink" href="#plot-a-2d-static-flatmap" title="Link to this heading">¶</a></h1>
 <p>quickflat visualizations use matplotlib to generate figure-quality 2D flatmaps.</p>
 <p>Similar to webgl, this tool uses pixel-based mapping to project functional data
 onto the cortical surfaces.</p>
@@ -65,33 +64,22 @@
 <li><img src="../../_images/sphx_glr_plot_make_figure_005.png" srcset="../../_images/sphx_glr_plot_make_figure_005.png" alt="plot make figure" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_make_figure_006.png" srcset="../../_images/sphx_glr_plot_make_figure_006.png" alt="plot make figure" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
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-Failed to get connection
-** (inkscape:5406): CRITICAL **: 01:31:12.783: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5406): CRITICAL **: 01:31:12.783: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
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+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
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+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
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+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
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+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -135,14 +123,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
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+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 8.499 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-make-figure-py">
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+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/6bf346d46f057497cb56d8bff9a090cb/plot_make_figure.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_make_figure.py</span></code></a></p>
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@@ -183,26 +171,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
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-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
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-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
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-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
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+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
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+</ul>
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@@ -215,13 +200,15 @@ <h3>Related Topics</h3>
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+  <li><a href="index.html">Quickflat Examples</a><ul>
       <li>Previous: <a href="plot_zoom_to_roi.html" title="previous chapter">Plotting a zoomed view of one ROI</a></li>
       <li>Next: <a href="plot_advanced_compositing.html" title="next chapter">Plot with advanced compositing</a></li>
   </ul></li>
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+  </ul></li>
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-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -229,8 +216,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -244,11 +231,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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diff --git a/auto_examples/quickflat/plot_make_gif.html b/auto_examples/quickflat/plot_make_gif.html
index bc91b5e8a..9415493c5 100644
--- a/auto_examples/quickflat/plot_make_gif.html
+++ b/auto_examples/quickflat/plot_make_gif.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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-    <title>Animate a series of volumes as a GIF &#8212; pycortex 1.2.4 documentation</title>
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@@ -24,8 +22,9 @@
    
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+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,27 +38,27 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-make-gif-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-make-gif-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="animate-a-series-of-volumes-as-a-gif">
-<span id="sphx-glr-auto-examples-quickflat-plot-make-gif-py"></span><h1>Animate a series of volumes as a GIF<a class="headerlink" href="#animate-a-series-of-volumes-as-a-gif" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-make-gif-py"></span><h1>Animate a series of volumes as a GIF<a class="headerlink" href="#animate-a-series-of-volumes-as-a-gif" title="Link to this heading">¶</a></h1>
 <p>A convenient way to compare two flat maps (e.g., prediction performance or
 tuning weights) is to flip back and forth between them. This example shows how
 to make an animated gif in which each frame is a flatmap.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
 </pre></div>
 </div>
 <p>Create several pycortex Volumes</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">volumes</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;first&#39;</span><span class="p">:</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Volume</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="n">subject</span><span class="o">=</span><span class="s1">&#39;S1&#39;</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="s1">&#39;fullhead&#39;</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">2</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s2">&quot;RdBu_r&quot;</span><span class="p">),</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">volumes</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;first&#39;</span><span class="p">:</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Volume</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="n">subject</span><span class="o">=</span><span class="s1">&#39;S1&#39;</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="s1">&#39;fullhead&#39;</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">2</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s2">&quot;RdBu_r&quot;</span><span class="p">),</span>
            <span class="s1">&#39;second&#39;</span><span class="p">:</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Volume</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="n">subject</span><span class="o">=</span><span class="s1">&#39;S1&#39;</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="s1">&#39;fullhead&#39;</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">2</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s2">&quot;RdBu_r&quot;</span><span class="p">)}</span>
 </pre></div>
 </div>
 <p>Plot flat maps individually</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">_</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">quickflat</span><span class="o">.</span><span class="n">make_figure</span><span class="p">(</span><span class="n">volumes</span><span class="p">[</span><span class="s1">&#39;first&#39;</span><span class="p">],</span> <span class="n">colorbar_location</span><span class="o">=</span><span class="s2">&quot;right&quot;</span><span class="p">)</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">_</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">quickflat</span><span class="o">.</span><span class="n">make_figure</span><span class="p">(</span><span class="n">volumes</span><span class="p">[</span><span class="s1">&#39;first&#39;</span><span class="p">],</span> <span class="n">colorbar_location</span><span class="o">=</span><span class="s2">&quot;right&quot;</span><span class="p">)</span>
 <span class="n">_</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">quickflat</span><span class="o">.</span><span class="n">make_figure</span><span class="p">(</span><span class="n">volumes</span><span class="p">[</span><span class="s1">&#39;second&#39;</span><span class="p">],</span> <span class="n">colorbar_location</span><span class="o">=</span><span class="s2">&quot;right&quot;</span><span class="p">)</span>
 <span class="n">_</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
@@ -68,35 +67,25 @@
 <li><img src="../../_images/sphx_glr_plot_make_gif_001.png" srcset="../../_images/sphx_glr_plot_make_gif_001.png" alt="plot make gif" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_make_gif_002.png" srcset="../../_images/sphx_glr_plot_make_gif_002.png" alt="plot make gif" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
-** (inkscape:5327): CRITICAL **: 01:30:14.896: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5327): CRITICAL **: 01:30:14.896: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5327): CRITICAL **: 01:30:14.896: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
-Failed to get connection
-** (inkscape:5332): CRITICAL **: 01:30:15.933: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5332): CRITICAL **: 01:30:15.933: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5332): CRITICAL **: 01:30:15.933: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <p>Generate an animated gif that switches between frames every 1.5 seconds</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">filename</span> <span class="o">=</span> <span class="s2">&quot;./flatmap_comparison.gif&quot;</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">filename</span> <span class="o">=</span> <span class="s2">&quot;./flatmap_comparison.gif&quot;</span>
 <span class="n">cortex</span><span class="o">.</span><span class="n">quickflat</span><span class="o">.</span><span class="n">make_gif</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">volumes</span><span class="p">,</span> <span class="n">frame_duration</span><span class="o">=</span><span class="mf">1.5</span><span class="p">,</span> <span class="n">colorbar_location</span><span class="o">=</span><span class="s2">&quot;right&quot;</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
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-** (inkscape:5341): CRITICAL **: 01:30:21.049: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <p>Display gif inline in an IPython notebook</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">io</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">io</span>
 <span class="kn">from</span> <span class="nn">IPython.display</span> <span class="kn">import</span> <span class="n">Image</span>
 
 <span class="n">stream</span> <span class="o">=</span> <span class="n">io</span><span class="o">.</span><span class="n">BytesIO</span><span class="p">()</span>
@@ -105,28 +94,23 @@
 <span class="n">Image</span><span class="p">(</span><span class="n">stream</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
 </pre></div>
 </div>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
-** (inkscape:5347): CRITICAL **: 01:30:23.595: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5347): CRITICAL **: 01:30:23.595: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5347): CRITICAL **: 01:30:23.595: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
-Failed to get connection
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-** (inkscape:5351): CRITICAL **: 01:30:25.381: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5351): CRITICAL **: 01:30:25.381: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
 &lt;IPython.core.display.Image object&gt;
 </pre></div>
 </div>
 <img alt="../../_images/flatmap_comparison.gif" src="../../_images/flatmap_comparison.gif" />
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  12.570 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-make-gif-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/041f818a934f2ae0af134690683b8c0a/plot_make_gif.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_make_gif.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 9.046 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-make-gif-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/0171ca85d45eca4cef1870c2e499de10/plot_make_gif.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_make_gif.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/041f818a934f2ae0af134690683b8c0a/plot_make_gif.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_make_gif.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -167,26 +151,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -199,13 +180,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Quickflat Examples</a><ul>
       <li>Previous: <a href="plot_connected_vertices.html" title="previous chapter">Plot which vertices are inside the same voxels</a></li>
       <li>Next: <a href="plot_thickness_nanmean.html" title="next chapter">Ignore NaN (not-a-number) values in thickness mapping</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -213,8 +196,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -228,11 +211,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_make_gif.rst.txt"
diff --git a/auto_examples/quickflat/plot_make_png.html b/auto_examples/quickflat/plot_make_png.html
index 626bbbdf9..2050e9c2d 100644
--- a/auto_examples/quickflat/plot_make_png.html
+++ b/auto_examples/quickflat/plot_make_png.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Save a 2D static flatmap as PNG &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Save a 2D static flatmap as PNG &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Plot cutouts on the flatmap" href="plot_cutouts.html" />
-    <link rel="prev" title="Save a 2D static flatmap as SVG" href="plot_make_svg.html" />
+    <link rel="next" title="Save a 2D static flatmap as SVG" href="plot_make_svg.html" />
+    <link rel="prev" title="Plot dropout regions on the flatmap" href="plot_dropout.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-make-png-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-make-png-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="save-a-2d-static-flatmap-as-png">
-<span id="sphx-glr-auto-examples-quickflat-plot-make-png-py"></span><h1>Save a 2D static flatmap as PNG<a class="headerlink" href="#save-a-2d-static-flatmap-as-png" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-make-png-py"></span><h1>Save a 2D static flatmap as PNG<a class="headerlink" href="#save-a-2d-static-flatmap-as-png" title="Link to this heading">¶</a></h1>
 <p>Plot a 2D static flatmap and save it as PNG file.</p>
 <p><strong>Some words on the `recache` parameter before we begin:</strong></p>
 <p>Setting the <cite>recache=True</cite> parameter recaches the flatmap cache located in
@@ -55,21 +54,16 @@
 <cite>quickflat.make_figure</cite> to fail but it nevertheless fails. Try it, it’s magic!</p>
 <p>The default background is set to be a transparent image. If you want to change
 that use the parameter <cite>bgcolor</cite>.</p>
-<img src="../../_images/sphx_glr_plot_make_png_001.png" srcset="../../_images/sphx_glr_plot_make_png_001.png" alt="plot make png" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
-** (inkscape:5233): CRITICAL **: 01:27:59.628: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5233): CRITICAL **: 01:27:59.628: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5233): CRITICAL **: 01:27:59.628: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
-Failed to get connection
-** (inkscape:5238): CRITICAL **: 01:28:00.663: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5238): CRITICAL **: 01:28:00.663: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5238): CRITICAL **: 01:28:00.663: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_make_png_001.png" srcset="../../_images/sphx_glr_plot_make_png_001.png" alt="plot make png" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -86,14 +80,14 @@
 <span class="n">_</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">quickflat</span><span class="o">.</span><span class="n">make_png</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">volume</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  4.446 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-make-png-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/18f82df3ca2286b724085a35ee372a66/plot_make_png.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_make_png.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 3.343 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-make-png-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/d9b4e151ce75aace67a450abc15967b6/plot_make_png.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_make_png.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/18f82df3ca2286b724085a35ee372a66/plot_make_png.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_make_png.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -134,26 +128,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -166,13 +157,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="plot_make_svg.html" title="previous chapter">Save a 2D static flatmap as SVG</a></li>
-      <li>Next: <a href="plot_cutouts.html" title="next chapter">Plot cutouts on the flatmap</a></li>
+  <li><a href="index.html">Quickflat Examples</a><ul>
+      <li>Previous: <a href="plot_dropout.html" title="previous chapter">Plot dropout regions on the flatmap</a></li>
+      <li>Next: <a href="plot_make_svg.html" title="next chapter">Save a 2D static flatmap as SVG</a></li>
+  </ul></li>
   </ul></li>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -180,8 +173,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -195,11 +188,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_make_png.rst.txt"
diff --git a/auto_examples/quickflat/plot_make_svg.html b/auto_examples/quickflat/plot_make_svg.html
index 24060ddaf..c501a490e 100644
--- a/auto_examples/quickflat/plot_make_svg.html
+++ b/auto_examples/quickflat/plot_make_svg.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Save a 2D static flatmap as SVG &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Save a 2D static flatmap as SVG &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Save a 2D static flatmap as PNG" href="plot_make_png.html" />
-    <link rel="prev" title="Plot dropout regions on the flatmap" href="plot_dropout.html" />
+    <link rel="next" title="Plot cutouts on the flatmap" href="plot_cutouts.html" />
+    <link rel="prev" title="Save a 2D static flatmap as PNG" href="plot_make_png.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-make-svg-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-make-svg-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="save-a-2d-static-flatmap-as-svg">
-<span id="sphx-glr-auto-examples-quickflat-plot-make-svg-py"></span><h1>Save a 2D static flatmap as SVG<a class="headerlink" href="#save-a-2d-static-flatmap-as-svg" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-make-svg-py"></span><h1>Save a 2D static flatmap as SVG<a class="headerlink" href="#save-a-2d-static-flatmap-as-svg" title="Link to this heading">¶</a></h1>
 <p>Plot a 2D static flatmap and save it as SVG file.</p>
 <p><strong>Some words on the `rechache` parameter before we begin:</strong></p>
 <p>Setting the <cite>recache=True</cite> parameter recaches the flatmap cache located in
@@ -55,21 +54,16 @@
 <cite>quickflat.make_figure</cite> to fail but it nevertheless fails. Try it, it’s magic!</p>
 <p>The default background is set to be a transparent image. If you want to change
 that use the parameter <cite>bgcolor</cite>.</p>
-<img src="../../_images/sphx_glr_plot_make_svg_001.png" srcset="../../_images/sphx_glr_plot_make_svg_001.png" alt="plot make svg" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
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-** (inkscape:5223): CRITICAL **: 01:27:55.257: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
-Failed to get connection
-** (inkscape:5226): CRITICAL **: 01:27:56.295: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5226): CRITICAL **: 01:27:56.295: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5226): CRITICAL **: 01:27:56.295: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_make_svg_001.png" srcset="../../_images/sphx_glr_plot_make_svg_001.png" alt="plot make svg" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -86,14 +80,14 @@
 <span class="n">_</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">quickflat</span><span class="o">.</span><span class="n">make_png</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">volume</span><span class="p">,</span> <span class="n">recache</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  4.189 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-make-svg-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/ed5d35a50b5cf2aef05b05a6e9bc34c8/plot_make_svg.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_make_svg.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 3.335 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-make-svg-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/93df78f3116af947a5f503a4a33c9ddd/plot_make_svg.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_make_svg.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/ed5d35a50b5cf2aef05b05a6e9bc34c8/plot_make_svg.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_make_svg.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -134,26 +128,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -166,13 +157,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="plot_dropout.html" title="previous chapter">Plot dropout regions on the flatmap</a></li>
-      <li>Next: <a href="plot_make_png.html" title="next chapter">Save a 2D static flatmap as PNG</a></li>
+  <li><a href="index.html">Quickflat Examples</a><ul>
+      <li>Previous: <a href="plot_make_png.html" title="previous chapter">Save a 2D static flatmap as PNG</a></li>
+      <li>Next: <a href="plot_cutouts.html" title="next chapter">Plot cutouts on the flatmap</a></li>
+  </ul></li>
   </ul></li>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -180,8 +173,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -195,11 +188,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_make_svg.rst.txt"
diff --git a/auto_examples/quickflat/plot_rois.html b/auto_examples/quickflat/plot_rois.html
index 2cf31805b..811564c34 100644
--- a/auto_examples/quickflat/plot_rois.html
+++ b/auto_examples/quickflat/plot_rois.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot ROIs on the flatmap &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot ROIs on the flatmap &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot which vertices are inside the same voxels" href="plot_connected_vertices.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-rois-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-rois-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-rois-on-the-flatmap">
-<span id="sphx-glr-auto-examples-quickflat-plot-rois-py"></span><h1>Plot ROIs on the flatmap<a class="headerlink" href="#plot-rois-on-the-flatmap" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-rois-py"></span><h1>Plot ROIs on the flatmap<a class="headerlink" href="#plot-rois-on-the-flatmap" title="Link to this heading">¶</a></h1>
 <p>ROIs are defined as sub-layers of the <cite>roi</cite> layer in
 &lt;filestore&gt;/&lt;subject&gt;/overlays.svg</p>
 <p>By default, ROIs and ROI labels are displayed when a flatmap is plotted using
@@ -55,21 +54,16 @@
 <li><img src="../../_images/sphx_glr_plot_rois_002.png" srcset="../../_images/sphx_glr_plot_rois_002.png" alt="plot rois" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_rois_003.png" srcset="../../_images/sphx_glr_plot_rois_003.png" alt="plot rois" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
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-** (inkscape:5256): CRITICAL **: 01:28:06.354: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
-Failed to get connection
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-** (inkscape:5260): CRITICAL **: 01:28:07.392: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5260): CRITICAL **: 01:28:07.392: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -91,14 +85,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  5.128 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-rois-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/5d14f4f9c6e0bbb965ff76d1a765dce7/plot_rois.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_rois.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 3.855 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-rois-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/6346ec4b05719b3c67f1d74a7c94ee9d/plot_rois.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_rois.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/5d14f4f9c6e0bbb965ff76d1a765dce7/plot_rois.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_rois.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -139,26 +133,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -171,13 +162,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Quickflat Examples</a><ul>
       <li>Previous: <a href="plot_cutouts.html" title="previous chapter">Plot cutouts on the flatmap</a></li>
       <li>Next: <a href="plot_connected_vertices.html" title="next chapter">Plot which vertices are inside the same voxels</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -185,8 +178,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -200,11 +193,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_rois.rst.txt"
diff --git a/auto_examples/quickflat/plot_sulci.html b/auto_examples/quickflat/plot_sulci.html
index e0f494abd..a2d01d9df 100644
--- a/auto_examples/quickflat/plot_sulci.html
+++ b/auto_examples/quickflat/plot_sulci.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot sulci on the flatmap &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot sulci on the flatmap &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot dropout regions on the flatmap" href="plot_dropout.html" />
-    <link rel="prev" title="Import fmriprep output" href="../import_surface/import_fmriprep.html" />
+    <link rel="prev" title="Quickflat Examples" href="index.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,33 +38,26 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-sulci-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-sulci-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-sulci-on-the-flatmap">
-<span id="sphx-glr-auto-examples-quickflat-plot-sulci-py"></span><h1>Plot sulci on the flatmap<a class="headerlink" href="#plot-sulci-on-the-flatmap" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-sulci-py"></span><h1>Plot sulci on the flatmap<a class="headerlink" href="#plot-sulci-on-the-flatmap" title="Link to this heading">¶</a></h1>
 <p>The sulci are defined in a sub-layer of the sulci layer in
 &lt;filestore&gt;/&lt;subject&gt;/overlays.svg.</p>
 <p>The parameter <cite>with_sulci</cite> in <cite>quickflat.make_figure</cite> controls
 displaying the sulci on the surface.</p>
-<img src="../../_images/sphx_glr_plot_sulci_001.png" srcset="../../_images/sphx_glr_plot_sulci_001.png" alt="plot sulci" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Generating curvature surface info...
-/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
-Failed to get connection
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-Failed to get connection
-** (inkscape:5213): CRITICAL **: 01:27:48.884: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5213): CRITICAL **: 01:27:48.884: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5213): CRITICAL **: 01:27:48.884: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_sulci_001.png" srcset="../../_images/sphx_glr_plot_sulci_001.png" alt="plot sulci" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Generating curvature surface info...
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
 
@@ -79,14 +71,14 @@
                                  <span class="n">with_sulci</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  9.313 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-sulci-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/39c6d9d181f5ba83d0d67e817aa2a20a/plot_sulci.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_sulci.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 7.101 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-sulci-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/85a1ab66519fd897a9f08ef615f4ac6b/plot_sulci.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_sulci.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/39c6d9d181f5ba83d0d67e817aa2a20a/plot_sulci.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_sulci.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -127,26 +119,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
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-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
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+</ul>
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@@ -159,13 +148,15 @@ <h3>Related Topics</h3>
 <ul>
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   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="../import_surface/import_fmriprep.html" title="previous chapter">Import fmriprep output</a></li>
+  <li><a href="index.html">Quickflat Examples</a><ul>
+      <li>Previous: <a href="index.html" title="previous chapter">Quickflat Examples</a></li>
       <li>Next: <a href="plot_dropout.html" title="next chapter">Plot dropout regions on the flatmap</a></li>
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+<search id="searchbox" style="display: none" role="search">
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-<script>$('#searchbox').show(0);</script>
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@@ -188,11 +179,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_sulci.rst.txt"
diff --git a/auto_examples/quickflat/plot_thickness_nanmean.html b/auto_examples/quickflat/plot_thickness_nanmean.html
index 6567edbfe..4a02f43bf 100644
--- a/auto_examples/quickflat/plot_thickness_nanmean.html
+++ b/auto_examples/quickflat/plot_thickness_nanmean.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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-    <title>Ignore NaN (not-a-number) values in thickness mapping &#8212; pycortex 1.2.4 documentation</title>
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+
+    <title>Ignore NaN (not-a-number) values in thickness mapping &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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     <link rel="search" title="Search" href="../../search.html" />
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@@ -24,8 +22,9 @@
    
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-thickness-nanmean-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-thickness-nanmean-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="ignore-nan-not-a-number-values-in-thickness-mapping">
-<span id="sphx-glr-auto-examples-quickflat-plot-thickness-nanmean-py"></span><h1>Ignore NaN (not-a-number) values in thickness mapping<a class="headerlink" href="#ignore-nan-not-a-number-values-in-thickness-mapping" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-thickness-nanmean-py"></span><h1>Ignore NaN (not-a-number) values in thickness mapping<a class="headerlink" href="#ignore-nan-not-a-number-values-in-thickness-mapping" title="Link to this heading">¶</a></h1>
 <p>By default, pycortex quickshow averages across the thickness of the cortex
 for each pixel in the resulting flatmap. If any of these layers contain a value
 of NaN (not-a-number), then the result of the average will also be Nan. This
@@ -56,21 +55,16 @@
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 <li><img src="../../_images/sphx_glr_plot_thickness_nanmean_002.png" srcset="../../_images/sphx_glr_plot_thickness_nanmean_002.png" alt="plot thickness nanmean" class = "sphx-glr-multi-img"/></li>
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+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
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 </div>
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 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">pyplot</span> <span class="k">as</span> <span class="n">plt</span>
 
@@ -100,14 +94,14 @@
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-</div>
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+<div class="sphx-glr-download sphx-glr-download-python docutils container">
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@@ -148,26 +142,23 @@ <h3>Navigation</h3>
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-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
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-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_zoom_to_roi.html">Plotting a zoomed view of one ROI</a></li>
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-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
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+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
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@@ -180,13 +171,15 @@ <h3>Related Topics</h3>
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       <li>Next: <a href="plot_zoom_to_roi.html" title="next chapter">Plotting a zoomed view of one ROI</a></li>
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+<search id="searchbox" style="display: none" role="search">
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@@ -194,8 +187,8 @@ <h3 id="searchlabel">Quick search</h3>
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@@ -209,11 +202,11 @@ <h3 id="searchlabel">Quick search</h3>
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+      &#169;2012, James Gao.
       
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/auto_examples/quickflat/plot_thickness_nanmean.rst.txt"
diff --git a/auto_examples/quickflat/plot_zoom_to_roi.html b/auto_examples/quickflat/plot_zoom_to_roi.html
index 65d4caa45..34f79a537 100644
--- a/auto_examples/quickflat/plot_zoom_to_roi.html
+++ b/auto_examples/quickflat/plot_zoom_to_roi.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+    <title>Plotting a zoomed view of one ROI &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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@@ -24,8 +22,9 @@
    
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
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@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-zoom-to-roi-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickflat-plot-zoom-to-roi-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plotting-a-zoomed-view-of-one-roi">
-<span id="sphx-glr-auto-examples-quickflat-plot-zoom-to-roi-py"></span><h1>Plotting a zoomed view of one ROI<a class="headerlink" href="#plotting-a-zoomed-view-of-one-roi" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickflat-plot-zoom-to-roi-py"></span><h1>Plotting a zoomed view of one ROI<a class="headerlink" href="#plotting-a-zoomed-view-of-one-roi" title="Link to this heading">¶</a></h1>
 <p>Sometimes it is useful to create a flatmap that is zoomed in one just a single
 ROI. The location of the ROI can be inferred automatically, making it easy to
 show just the region around that ROI.</p>
@@ -51,22 +50,17 @@
 <li><img src="../../_images/sphx_glr_plot_zoom_to_roi_001.png" srcset="../../_images/sphx_glr_plot_zoom_to_roi_001.png" alt="plot zoom to roi" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_zoom_to_roi_002.png" srcset="../../_images/sphx_glr_plot_zoom_to_roi_002.png" alt="plot zoom to roi" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Failed to get connection
-** (inkscape:5375): CRITICAL **: 01:30:32.250: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5375): CRITICAL **: 01:30:32.251: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5375): CRITICAL **: 01:30:32.251: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 Generating a flatmap cache
-Failed to get connection
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-** (inkscape:5393): CRITICAL **: 01:31:05.967: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5393): CRITICAL **: 01:31:05.967: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 3921 x 2048 pixels (192 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># sphinx_gallery_thumbnail_number = 2</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="c1"># sphinx_gallery_thumbnail_number = 2</span>
 
 <span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
@@ -103,14 +97,14 @@
 <span class="n">zoom_to_roi</span><span class="p">(</span><span class="s1">&#39;S1&#39;</span><span class="p">,</span> <span class="s1">&#39;AC&#39;</span><span class="p">,</span> <span class="s1">&#39;left&#39;</span><span class="p">)</span>
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-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 36.630 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickflat-plot-zoom-to-roi-py">
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/47c96fe612df9e0740f56f228180766d/plot_zoom_to_roi.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_zoom_to_roi.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -151,26 +145,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_sulci.html">Plot sulci on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_dropout.html">Plot dropout regions on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_svg.html">Save a 2D static flatmap as SVG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_png.html">Save a 2D static flatmap as PNG</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_cutouts.html">Plot cutouts on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_rois.html">Plot ROIs on the flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_connected_vertices.html">Plot which vertices are inside the same voxels</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_gif.html">Animate a series of volumes as a GIF</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_thickness_nanmean.html">Ignore NaN (not-a-number) values in thickness mapping</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plotting a zoomed view of one ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_make_figure.html">Plot a 2D static flatmap</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_advanced_compositing.html">Plot with advanced compositing</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -183,13 +174,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Quickflat Examples</a><ul>
       <li>Previous: <a href="plot_thickness_nanmean.html" title="previous chapter">Ignore NaN (not-a-number) values in thickness mapping</a></li>
       <li>Next: <a href="plot_make_figure.html" title="next chapter">Plot a 2D static flatmap</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -197,8 +190,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -212,11 +205,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/plot_zoom_to_roi.rst.txt"
diff --git a/auto_examples/quickflat/sg_execution_times.html b/auto_examples/quickflat/sg_execution_times.html
index a5ced18e0..2928bbe58 100644
--- a/auto_examples/quickflat/sg_execution_times.html
+++ b/auto_examples/quickflat/sg_execution_times.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Computation times &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Computation times &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,65 +35,79 @@
           <div class="body" role="main">
             
   <section id="computation-times">
-<span id="sphx-glr-auto-examples-quickflat-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Permalink to this headline">¶</a></h1>
-<p><strong>03:43.983</strong> total execution time for <strong>auto_examples_quickflat</strong> files:</p>
-<table class="docutils align-default">
-<colgroup>
-<col style="width: 85%" />
-<col style="width: 9%" />
-<col style="width: 6%" />
-</colgroup>
-<tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_connected_vertices.html#sphx-glr-auto-examples-quickflat-plot-connected-vertices-py"><span class="std std-ref">Plot which vertices are inside the same voxels</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_connected_vertices.py</span></code>)</p></td>
-<td><p>02:03.094</p></td>
-<td><p>0.0 MB</p></td>
+<span id="sphx-glr-auto-examples-quickflat-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>02:29.541</strong> total execution time for 12 files <strong>from auto_examples/quickflat</strong>:</p>
+<div class="docutils container">
+<style scoped>
+<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
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+<script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
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+<script type="text/javascript" class="init">
+$(document).ready( function () {
+    $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+} );
+</script><table class="table table-striped sg-datatable docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_zoom_to_roi.html#sphx-glr-auto-examples-quickflat-plot-zoom-to-roi-py"><span class="std std-ref">Plotting a zoomed view of one ROI</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_zoom_to_roi.py</span></code>)</p></td>
-<td><p>00:39.235</p></td>
-<td><p>0.0 MB</p></td>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_connected_vertices.html#sphx-glr-auto-examples-quickflat-plot-connected-vertices-py"><span class="std std-ref">Plot which vertices are inside the same voxels</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_connected_vertices.py</span></code>)</p></td>
+<td><p>01:06.515</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_make_gif.html#sphx-glr-auto-examples-quickflat-plot-make-gif-py"><span class="std std-ref">Animate a series of volumes as a GIF</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_make_gif.py</span></code>)</p></td>
-<td><p>00:12.570</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_zoom_to_roi.html#sphx-glr-auto-examples-quickflat-plot-zoom-to-roi-py"><span class="std std-ref">Plotting a zoomed view of one ROI</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_zoom_to_roi.py</span></code>)</p></td>
+<td><p>00:36.630</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_make_figure.html#sphx-glr-auto-examples-quickflat-plot-make-figure-py"><span class="std std-ref">Plot a 2D static flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_make_figure.py</span></code>)</p></td>
-<td><p>00:11.182</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_make_gif.html#sphx-glr-auto-examples-quickflat-plot-make-gif-py"><span class="std std-ref">Animate a series of volumes as a GIF</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_make_gif.py</span></code>)</p></td>
+<td><p>00:09.046</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_sulci.html#sphx-glr-auto-examples-quickflat-plot-sulci-py"><span class="std std-ref">Plot sulci on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_sulci.py</span></code>)</p></td>
-<td><p>00:09.313</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_make_figure.html#sphx-glr-auto-examples-quickflat-plot-make-figure-py"><span class="std std-ref">Plot a 2D static flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_make_figure.py</span></code>)</p></td>
+<td><p>00:08.499</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_advanced_compositing.html#sphx-glr-auto-examples-quickflat-plot-advanced-compositing-py"><span class="std std-ref">Plot with advanced compositing</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_advanced_compositing.py</span></code>)</p></td>
-<td><p>00:05.141</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_sulci.html#sphx-glr-auto-examples-quickflat-plot-sulci-py"><span class="std std-ref">Plot sulci on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_sulci.py</span></code>)</p></td>
+<td><p>00:07.101</p></td>
+<td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="plot_rois.html#sphx-glr-auto-examples-quickflat-plot-rois-py"><span class="std std-ref">Plot ROIs on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_rois.py</span></code>)</p></td>
-<td><p>00:05.128</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>00:03.855</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_make_png.html#sphx-glr-auto-examples-quickflat-plot-make-png-py"><span class="std std-ref">Save a 2D static flatmap as PNG</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_make_png.py</span></code>)</p></td>
-<td><p>00:04.446</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_advanced_compositing.html#sphx-glr-auto-examples-quickflat-plot-advanced-compositing-py"><span class="std std-ref">Plot with advanced compositing</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_advanced_compositing.py</span></code>)</p></td>
+<td><p>00:03.674</p></td>
+<td><p>0.0</p></td>
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 <tr class="row-odd"><td><p><a class="reference internal" href="plot_thickness_nanmean.html#sphx-glr-auto-examples-quickflat-plot-thickness-nanmean-py"><span class="std std-ref">Ignore NaN (not-a-number) values in thickness mapping</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_thickness_nanmean.py</span></code>)</p></td>
-<td><p>00:04.428</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>00:03.378</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_make_png.html#sphx-glr-auto-examples-quickflat-plot-make-png-py"><span class="std std-ref">Save a 2D static flatmap as PNG</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_make_png.py</span></code>)</p></td>
+<td><p>00:03.343</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_make_svg.html#sphx-glr-auto-examples-quickflat-plot-make-svg-py"><span class="std std-ref">Save a 2D static flatmap as SVG</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_make_svg.py</span></code>)</p></td>
-<td><p>00:04.189</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_make_svg.html#sphx-glr-auto-examples-quickflat-plot-make-svg-py"><span class="std std-ref">Save a 2D static flatmap as SVG</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_make_svg.py</span></code>)</p></td>
+<td><p>00:03.335</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_dropout.html#sphx-glr-auto-examples-quickflat-plot-dropout-py"><span class="std std-ref">Plot dropout regions on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_dropout.py</span></code>)</p></td>
-<td><p>00:03.200</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_dropout.html#sphx-glr-auto-examples-quickflat-plot-dropout-py"><span class="std std-ref">Plot dropout regions on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_dropout.py</span></code>)</p></td>
+<td><p>00:02.353</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_cutouts.html#sphx-glr-auto-examples-quickflat-plot-cutouts-py"><span class="std std-ref">Plot cutouts on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_cutouts.py</span></code>)</p></td>
-<td><p>00:02.057</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_cutouts.html#sphx-glr-auto-examples-quickflat-plot-cutouts-py"><span class="std std-ref">Plot cutouts on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_cutouts.py</span></code>)</p></td>
+<td><p>00:01.811</p></td>
+<td><p>0.0</p></td>
 </tr>
 </tbody>
 </table>
+</div>
 </section>
 
 
@@ -144,7 +157,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -152,8 +165,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -167,11 +180,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickflat/sg_execution_times.rst.txt"
diff --git a/auto_examples/quickstart/index.html b/auto_examples/quickstart/index.html
new file mode 100644
index 000000000..6826c31f5
--- /dev/null
+++ b/auto_examples/quickstart/index.html
@@ -0,0 +1,164 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Quickstart Examples &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="Plot Example Retinotopy in Web Viewer" href="retinotopy_webgl.html" />
+    <link rel="prev" title="Plot with advanced compositing" href="../quickflat/plot_advanced_compositing.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="quickstart-examples">
+<span id="sphx-glr-auto-examples-quickstart"></span><h1>Quickstart Examples<a class="headerlink" href="#quickstart-examples" title="Link to this heading">¶</a></h1>
+<p>Examples demonstrating how to get started with pycortex.</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain in a web viewer. In ..."><img alt="" src="../../_images/sphx_glr_retinotopy_webgl_thumb.png" />
+<p><a class="reference internal" href="retinotopy_webgl.html#sphx-glr-auto-examples-quickstart-retinotopy-webgl-py"><span class="std std-ref">Plot Example Retinotopy in Web Viewer</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot Example Retinotopy in Web Viewer</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Easily locating your config file and filestore locations. This comes in useful when things don&#x27;..."><img alt="" src="../../_images/sphx_glr_show_config_thumb.png" />
+<p><a class="reference internal" href="show_config.html#sphx-glr-auto-examples-quickstart-show-config-py"><span class="std std-ref">Finding out where the config and filestore are</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Finding out where the config and filestore are</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This demo shows how to plot example retinotopy data onto a subject&#x27;s brain on a flatmap. In ord..."><img alt="" src="../../_images/sphx_glr_plot_retinotopy_flatmap_thumb.png" />
+<p><a class="reference internal" href="plot_retinotopy_flatmap.html#sphx-glr-auto-examples-quickstart-plot-retinotopy-flatmap-py"><span class="std std-ref">Plot Example Retinotopy Flatmaps</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot Example Retinotopy Flatmaps</div>
+</div></div><div class="toctree-wrapper compound">
+</div>
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
+
+
+
+
+
+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3 current"><a class="current reference internal" href="#">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
+</ul>
+
+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  <li><a href="../index.html">Example Gallery</a><ul>
+      <li>Previous: <a href="../quickflat/plot_advanced_compositing.html" title="previous chapter">Plot with advanced compositing</a></li>
+      <li>Next: <a href="retinotopy_webgl.html" title="next chapter">Plot Example Retinotopy in Web Viewer</a></li>
+  </ul></li>
+  </ul></li>
+</ul>
+</div>
+<search id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
+
+
+
+
+
+
+
+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/auto_examples/quickstart/index.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
+
+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/auto_examples/quickstart/plot_retinotopy_flatmap.html b/auto_examples/quickstart/plot_retinotopy_flatmap.html
index 89c37a746..bdd451ab4 100644
--- a/auto_examples/quickstart/plot_retinotopy_flatmap.html
+++ b/auto_examples/quickstart/plot_retinotopy_flatmap.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot Example Retinotopy Flatmaps &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot Example Retinotopy Flatmaps &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Tissot’s Indicatrix" href="../surface_analyses/plot_tissots_indicatrix.html" />
+    <link rel="next" title="Surface Analysis Examples" href="../surface_analyses/index.html" />
     <link rel="prev" title="Finding out where the config and filestore are" href="show_config.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,14 +38,14 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickstart-plot-retinotopy-flatmap-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickstart-plot-retinotopy-flatmap-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-example-retinotopy-flatmaps">
-<span id="sphx-glr-auto-examples-quickstart-plot-retinotopy-flatmap-py"></span><h1>Plot Example Retinotopy Flatmaps<a class="headerlink" href="#plot-example-retinotopy-flatmaps" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickstart-plot-retinotopy-flatmap-py"></span><h1>Plot Example Retinotopy Flatmaps<a class="headerlink" href="#plot-example-retinotopy-flatmaps" title="Link to this heading">¶</a></h1>
 <p>This demo shows how to plot example retinotopy data onto a subject’s brain
 on a flatmap. In order for this demo to work, you need to download this
-<a class="reference external" href="http://gallantlab.org/pycortex/S1_retinotopy.hdf">dataset</a>, but that can also be done automatically through the <cite>urllib</cite>
+<a class="reference external" href="https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf">dataset</a>, but that can also be done automatically through the <cite>urllib</cite>
 command that is included.</p>
 <p>S1 is the example subject that comes with pycortex, but if you want to plot
 data onto a different subject, you will need to have them in your filestore,
@@ -55,33 +54,26 @@
 <li><img src="../../_images/sphx_glr_plot_retinotopy_flatmap_001.png" srcset="../../_images/sphx_glr_plot_retinotopy_flatmap_001.png" alt="plot retinotopy flatmap" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_retinotopy_flatmap_002.png" srcset="../../_images/sphx_glr_plot_retinotopy_flatmap_002.png" alt="plot retinotopy flatmap" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
 <div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Mask not found, generating...
-Failed to get connection
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-** (inkscape:5434): CRITICAL **: 01:31:30.200: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
-Failed to get connection
-** (inkscape:5438): CRITICAL **: 01:31:31.326: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5438): CRITICAL **: 01:31:31.326: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
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+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">six</span>
-<span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="k">if</span> <span class="n">six</span><span class="o">.</span><span class="n">PY2</span><span class="p">:</span>
-    <span class="kn">from</span> <span class="nn">urllib</span> <span class="kn">import</span> <span class="n">urlretrieve</span>
-<span class="k">elif</span> <span class="n">six</span><span class="o">.</span><span class="n">PY3</span><span class="p">:</span>
-    <span class="kn">from</span> <span class="nn">urllib.request</span> <span class="kn">import</span> <span class="n">urlretrieve</span>
+<span class="kn">from</span> <span class="nn">urllib.request</span> <span class="kn">import</span> <span class="n">urlretrieve</span>
 
 
 <span class="c1"># Download the dataset and load it</span>
-<span class="n">_</span> <span class="o">=</span> <span class="n">urlretrieve</span><span class="p">(</span><span class="s2">&quot;http://gallantlab.org/pycortex/S1_retinotopy.hdf&quot;</span><span class="p">,</span>
-                <span class="s2">&quot;S1_retinotopy.hdf&quot;</span><span class="p">)</span>
+<span class="n">_</span> <span class="o">=</span> <span class="n">urlretrieve</span><span class="p">(</span>
+    <span class="s2">&quot;https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;S1_retinotopy.hdf&quot;</span>
+<span class="p">)</span>
 <span class="n">ret_data</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;S1_retinotopy.hdf&quot;</span><span class="p">)</span>
 
 <span class="c1"># The retinotopy data has to be divided into left and right hemispheres</span>
@@ -100,14 +92,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  6.018 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickstart-plot-retinotopy-flatmap-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/5df5411f55d86f3318a24a2deffe16fe/plot_retinotopy_flatmap.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_retinotopy_flatmap.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 5.836 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickstart-plot-retinotopy-flatmap-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/598490201234cf5d8e4a3f5a8dc8c372/plot_retinotopy_flatmap.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_retinotopy_flatmap.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/5df5411f55d86f3318a24a2deffe16fe/plot_retinotopy_flatmap.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_retinotopy_flatmap.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -148,17 +140,23 @@ <h3>Navigation</h3>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="retinotopy_webgl.html">Plot Example Retinotopy in Web Viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="show_config.html">Finding out where the config and filestore are</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot Example Retinotopy Flatmaps</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
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@@ -171,13 +169,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Quickstart Examples</a><ul>
       <li>Previous: <a href="show_config.html" title="previous chapter">Finding out where the config and filestore are</a></li>
-      <li>Next: <a href="../surface_analyses/plot_tissots_indicatrix.html" title="next chapter">Tissot’s Indicatrix</a></li>
+      <li>Next: <a href="../surface_analyses/index.html" title="next chapter">Surface Analysis Examples</a></li>
+  </ul></li>
   </ul></li>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -185,8 +185,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -200,11 +200,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickstart/plot_retinotopy_flatmap.rst.txt"
diff --git a/auto_examples/quickstart/retinotopy_webgl.html b/auto_examples/quickstart/retinotopy_webgl.html
index 2edbe0a47..cb17a7b2c 100644
--- a/auto_examples/quickstart/retinotopy_webgl.html
+++ b/auto_examples/quickstart/retinotopy_webgl.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot Example Retinotopy in Web Viewer &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot Example Retinotopy in Web Viewer &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Finding out where the config and filestore are" href="show_config.html" />
-    <link rel="prev" title="Plot with advanced compositing" href="../quickflat/plot_advanced_compositing.html" />
+    <link rel="prev" title="Quickstart Examples" href="index.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,44 +38,42 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickstart-retinotopy-webgl-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickstart-retinotopy-webgl-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-example-retinotopy-in-web-viewer">
-<span id="sphx-glr-auto-examples-quickstart-retinotopy-webgl-py"></span><h1>Plot Example Retinotopy in Web Viewer<a class="headerlink" href="#plot-example-retinotopy-in-web-viewer" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickstart-retinotopy-webgl-py"></span><h1>Plot Example Retinotopy in Web Viewer<a class="headerlink" href="#plot-example-retinotopy-in-web-viewer" title="Link to this heading">¶</a></h1>
 <p>This demo shows how to plot example retinotopy data onto a subject’s brain
 in a web viewer. In order for this demo to work, you need to download this
-<a class="reference external" href="http://gallantlab.org/pycortex/S1_retinotopy.hdf">dataset</a>, but that can also be done automatically through the <cite>urllib</cite>
+<a class="reference external" href="https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf">dataset</a>, but that can also be done automatically through the <cite>urllib</cite>
 command that is included.</p>
 <p>S1 is the example subject that comes with pycortex, but if you want to plot
 data onto a different subject, you will need to have them in your filestore.</p>
 <p>This demo will not actually open the web viewer for you, but if you run it
 yourself you will get a viewer showing something like the following.</p>
 <img alt="../../_images/angle_left.png" src="../../_images/angle_left.png" />
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
-<span class="k">try</span><span class="p">:</span> <span class="c1">#  python 2</span>
-    <span class="kn">from</span> <span class="nn">urllib</span> <span class="kn">import</span> <span class="n">urlretrieve</span>
-<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>  <span class="c1"># python 3</span>
-    <span class="kn">from</span> <span class="nn">urllib.request</span> <span class="kn">import</span> <span class="n">urlretrieve</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<span class="kn">from</span> <span class="nn">urllib.request</span> <span class="kn">import</span> <span class="n">urlretrieve</span>
 
 
 <span class="c1"># Download and load in retinotopy data</span>
-<span class="n">_</span> <span class="o">=</span> <span class="n">urlretrieve</span><span class="p">(</span><span class="s2">&quot;http://gallantlab.org/pycortex/S1_retinotopy.hdf&quot;</span><span class="p">,</span>
-                <span class="s2">&quot;S1_retinotopy.hdf&quot;</span><span class="p">)</span>
+<span class="n">_</span> <span class="o">=</span> <span class="n">urlretrieve</span><span class="p">(</span>
+    <span class="s2">&quot;https://s3.us-west-1.wasabisys.com/glab-public-datasets/S1_retinotopy.hdf&quot;</span><span class="p">,</span>
+    <span class="s2">&quot;S1_retinotopy.hdf&quot;</span>
+<span class="p">)</span>
 <span class="n">ret_data</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="s2">&quot;S1_retinotopy.hdf&quot;</span><span class="p">)</span>
 
 <span class="c1"># Open the webviewer</span>
 <span class="n">cortex</span><span class="o">.</span><span class="n">webshow</span><span class="p">(</span><span class="n">ret_data</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickstart-retinotopy-webgl-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/b2aa18c33412ed6283b23512eb23c3b9/retinotopy_webgl.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">retinotopy_webgl.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickstart-retinotopy-webgl-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/42acd7dd246f3d3b2522140c0edb86ef/retinotopy_webgl.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">retinotopy_webgl.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/b2aa18c33412ed6283b23512eb23c3b9/retinotopy_webgl.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">retinotopy_webgl.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -117,17 +114,23 @@ <h3>Navigation</h3>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plot Example Retinotopy in Web Viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="show_config.html">Finding out where the config and filestore are</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_retinotopy_flatmap.html">Plot Example Retinotopy Flatmaps</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
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@@ -140,13 +143,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="../quickflat/plot_advanced_compositing.html" title="previous chapter">Plot with advanced compositing</a></li>
+  <li><a href="index.html">Quickstart Examples</a><ul>
+      <li>Previous: <a href="index.html" title="previous chapter">Quickstart Examples</a></li>
       <li>Next: <a href="show_config.html" title="next chapter">Finding out where the config and filestore are</a></li>
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+  </ul></li>
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+<search id="searchbox" style="display: none" role="search">
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@@ -154,8 +159,8 @@ <h3 id="searchlabel">Quick search</h3>
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-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -169,11 +174,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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diff --git a/auto_examples/quickstart/sg_execution_times.html b/auto_examples/quickstart/sg_execution_times.html
index 10142466e..6f6795008 100644
--- a/auto_examples/quickstart/sg_execution_times.html
+++ b/auto_examples/quickstart/sg_execution_times.html
@@ -1,29 +1,28 @@
-
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-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,29 +35,43 @@
           <div class="body" role="main">
             
   <section id="computation-times">
-<span id="sphx-glr-auto-examples-quickstart-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Permalink to this headline">¶</a></h1>
-<p><strong>00:06.018</strong> total execution time for <strong>auto_examples_quickstart</strong> files:</p>
-<table class="docutils align-default">
-<colgroup>
-<col style="width: 84%" />
-<col style="width: 9%" />
-<col style="width: 7%" />
-</colgroup>
+<span id="sphx-glr-auto-examples-quickstart-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>00:05.836</strong> total execution time for 3 files <strong>from auto_examples/quickstart</strong>:</p>
+<div class="docutils container">
+<style scoped>
+<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+<link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+</style>
+<script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+<script type="text/javascript" class="init">
+$(document).ready( function () {
+    $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+} );
+</script><table class="table table-striped sg-datatable docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
+</tr>
+</thead>
 <tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_retinotopy_flatmap.html#sphx-glr-auto-examples-quickstart-plot-retinotopy-flatmap-py"><span class="std std-ref">Plot Example Retinotopy Flatmaps</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_retinotopy_flatmap.py</span></code>)</p></td>
-<td><p>00:06.018</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_retinotopy_flatmap.html#sphx-glr-auto-examples-quickstart-plot-retinotopy-flatmap-py"><span class="std std-ref">Plot Example Retinotopy Flatmaps</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_retinotopy_flatmap.py</span></code>)</p></td>
+<td><p>00:05.836</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="retinotopy_webgl.html#sphx-glr-auto-examples-quickstart-retinotopy-webgl-py"><span class="std std-ref">Plot Example Retinotopy in Web Viewer</span></a> (<code class="docutils literal notranslate"><span class="pre">retinotopy_webgl.py</span></code>)</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="retinotopy_webgl.html#sphx-glr-auto-examples-quickstart-retinotopy-webgl-py"><span class="std std-ref">Plot Example Retinotopy in Web Viewer</span></a> (<code class="docutils literal notranslate"><span class="pre">retinotopy_webgl.py</span></code>)</p></td>
 <td><p>00:00.000</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="show_config.html#sphx-glr-auto-examples-quickstart-show-config-py"><span class="std std-ref">Finding out where the config and filestore are</span></a> (<code class="docutils literal notranslate"><span class="pre">show_config.py</span></code>)</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="show_config.html#sphx-glr-auto-examples-quickstart-show-config-py"><span class="std std-ref">Finding out where the config and filestore are</span></a> (<code class="docutils literal notranslate"><span class="pre">show_config.py</span></code>)</p></td>
 <td><p>00:00.000</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>0.0</p></td>
 </tr>
 </tbody>
 </table>
+</div>
 </section>
 
 
@@ -108,7 +121,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -116,8 +129,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -131,11 +144,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickstart/sg_execution_times.rst.txt"
diff --git a/auto_examples/quickstart/show_config.html b/auto_examples/quickstart/show_config.html
index 1e42755ac..4c36502c7 100644
--- a/auto_examples/quickstart/show_config.html
+++ b/auto_examples/quickstart/show_config.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Finding out where the config and filestore are &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Finding out where the config and filestore are &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot Example Retinotopy Flatmaps" href="plot_retinotopy_flatmap.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,35 +38,35 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-quickstart-show-config-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-quickstart-show-config-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="finding-out-where-the-config-and-filestore-are">
-<span id="sphx-glr-auto-examples-quickstart-show-config-py"></span><h1>Finding out where the config and filestore are<a class="headerlink" href="#finding-out-where-the-config-and-filestore-are" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-quickstart-show-config-py"></span><h1>Finding out where the config and filestore are<a class="headerlink" href="#finding-out-where-the-config-and-filestore-are" title="Link to this heading">¶</a></h1>
 <p>Easily locating your config file and filestore locations.
 This comes in useful when things don’t work because the config file is not set correctly.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">print_function</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="kn">import</span> <span class="n">print_function</span>
 <span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">from</span> <span class="nn">cortex.options</span> <span class="kn">import</span> <span class="n">config</span>
 </pre></div>
 </div>
 <p>Finding where your config file is.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="nb">print</span><span class="p">(</span><span class="n">cortex</span><span class="o">.</span><span class="n">options</span><span class="o">.</span><span class="n">usercfg</span><span class="p">)</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="nb">print</span><span class="p">(</span><span class="n">cortex</span><span class="o">.</span><span class="n">options</span><span class="o">.</span><span class="n">usercfg</span><span class="p">)</span>
 </pre></div>
 </div>
 <p>Finding where the current filestore is.
 Useful for when your subjects don’t show up in cortex.db, and all you have is S1.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="nb">print</span><span class="p">(</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;basic&#39;</span><span class="p">,</span> <span class="s1">&#39;filestore&#39;</span><span class="p">))</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="nb">print</span><span class="p">(</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;basic&#39;</span><span class="p">,</span> <span class="s1">&#39;filestore&#39;</span><span class="p">))</span>
 </pre></div>
 </div>
 <p>Finding where pycortex is looking for colormaps.
 Useful for when you get color map not found messages.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="nb">print</span><span class="p">(</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;webgl&#39;</span><span class="p">,</span> <span class="s1">&#39;colormaps&#39;</span><span class="p">))</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="nb">print</span><span class="p">(</span><span class="n">config</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;webgl&#39;</span><span class="p">,</span> <span class="s1">&#39;colormaps&#39;</span><span class="p">))</span>
 </pre></div>
 </div>
 <p>To look at your config file, it is recommended that you open it with a text editor.
 However, you <em>can</em> still look at options from within pycortex.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># sections gets the upper-level sections in the config file</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="c1"># sections gets the upper-level sections in the config file</span>
 <span class="n">sections</span> <span class="o">=</span> <span class="n">config</span><span class="o">.</span><span class="n">sections</span><span class="p">()</span>
 <span class="nb">print</span><span class="p">(</span><span class="n">sections</span><span class="p">)</span>
 
@@ -76,14 +75,13 @@
 <span class="nb">print</span><span class="p">(</span><span class="n">basic_config</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickstart-show-config-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/666897a80f1a48025449c65195a53802/show_config.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">show_config.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-quickstart-show-config-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/5ec582772cb6c68c66aedc35da2aec38/show_config.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">show_config.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/666897a80f1a48025449c65195a53802/show_config.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">show_config.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -124,17 +122,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="retinotopy_webgl.html">Plot Example Retinotopy in Web Viewer</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Finding out where the config and filestore are</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_retinotopy_flatmap.html">Plot Example Retinotopy Flatmaps</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
 </ul>
 </li>
 </ul>
@@ -147,13 +151,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Quickstart Examples</a><ul>
       <li>Previous: <a href="retinotopy_webgl.html" title="previous chapter">Plot Example Retinotopy in Web Viewer</a></li>
       <li>Next: <a href="plot_retinotopy_flatmap.html" title="next chapter">Plot Example Retinotopy Flatmaps</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -161,8 +167,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -176,11 +182,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/quickstart/show_config.rst.txt"
diff --git a/auto_examples/sg_execution_times.html b/auto_examples/sg_execution_times.html
new file mode 100644
index 000000000..df8ed81be
--- /dev/null
+++ b/auto_examples/sg_execution_times.html
@@ -0,0 +1,154 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Computation times &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+   
+  <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="computation-times">
+<span id="sphx-glr-auto-examples-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>00:00.000</strong> total execution time for 0 files <strong>from auto_examples</strong>:</p>
+<div class="docutils container">
+<style scoped>
+<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+<link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
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+</tr>
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+<li class="toctree-l1"><a class="reference internal" href="../database.html">Surface Database</a></li>
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diff --git a/auto_examples/surface_analyses/index.html b/auto_examples/surface_analyses/index.html
new file mode 100644
index 000000000..6ac205856
--- /dev/null
+++ b/auto_examples/surface_analyses/index.html
@@ -0,0 +1,173 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Surface Analysis Examples &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="Tissot’s Indicatrix" href="plot_tissots_indicatrix.html" />
+    <link rel="prev" title="Plot Example Retinotopy Flatmaps" href="../quickstart/plot_retinotopy_flatmap.html" />
+   
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+            
+  <section id="surface-analysis-examples">
+<span id="sphx-glr-auto-examples-surface-analyses"></span><h1>Surface Analysis Examples<a class="headerlink" href="#surface-analysis-examples" title="Link to this heading">¶</a></h1>
+<p>Examples demonstrating operations and analyses done on brain surfaces.</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si..."><img alt="" src="../../_images/sphx_glr_plot_tissots_indicatrix_thumb.png" />
+<p><a class="reference internal" href="plot_tissots_indicatrix.html#sphx-glr-auto-examples-surface-analyses-plot-tissots-indicatrix-py"><span class="std std-ref">Tissot’s Indicatrix</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Tissot's Indicatrix</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This will plot a geodesic path between two vertices on the cortical surface. This path is based..."><img alt="" src="../../_images/sphx_glr_plot_geodesic_path_thumb.png" />
+<p><a class="reference internal" href="plot_geodesic_path.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-path-py"><span class="std std-ref">Plotting Geodesic Paths</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plotting Geodesic Paths</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="This plots the distances (in mm) between a vertex or set of vertices and all other vertices on ..."><img alt="" src="../../_images/sphx_glr_plot_geodesic_distance_thumb.png" />
+<p><a class="reference internal" href="plot_geodesic_distance.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-distance-py"><span class="std std-ref">Plotting Geodesic Distances</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plotting Geodesic Distances</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Creating a flatmap from a folded cortical surface always introduces some distortion. This is si..."><img alt="" src="../../_images/sphx_glr_plot_flatmap_distortion_thumb.png" />
+<p><a class="reference internal" href="plot_flatmap_distortion.html#sphx-glr-auto-examples-surface-analyses-plot-flatmap-distortion-py"><span class="std std-ref">Flatmap Distortion</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Flatmap Distortion</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Subsurfaces can be used for efficient operations on subsets of cortical surface"><img alt="" src="../../_images/sphx_glr_plot_subsurfaces_thumb.png" />
+<p><a class="reference internal" href="plot_subsurfaces.html#sphx-glr-auto-examples-surface-analyses-plot-subsurfaces-py"><span class="std std-ref">Plot and Use Subsurface Tools</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Plot and Use Subsurface Tools</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to interpolate data from a sparse collection of points to all the p..."><img alt="" src="../../_images/sphx_glr_plot_interpolate_data_thumb.png" />
+<p><a class="reference internal" href="plot_interpolate_data.html#sphx-glr-auto-examples-surface-analyses-plot-interpolate-data-py"><span class="std std-ref">Interpolate Data</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Interpolate Data</div>
+</div></div><div class="toctree-wrapper compound">
+</div>
+</section>
+
+
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+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
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+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
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+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
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+<li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3 current"><a class="current reference internal" href="#">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
+</ul>
+
+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  <li><a href="../index.html">Example Gallery</a><ul>
+      <li>Previous: <a href="../quickstart/plot_retinotopy_flatmap.html" title="previous chapter">Plot Example Retinotopy Flatmaps</a></li>
+      <li>Next: <a href="plot_tissots_indicatrix.html" title="next chapter">Tissot’s Indicatrix</a></li>
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+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
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+<script>document.getElementById('searchbox').style.display = "block"</script>
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+      <div class="clearer"></div>
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+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/auto_examples/surface_analyses/index.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
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+</html>
\ No newline at end of file
diff --git a/auto_examples/surface_analyses/plot_flatmap_distortion.html b/auto_examples/surface_analyses/plot_flatmap_distortion.html
index cfcfe5d24..efc1bf2bf 100644
--- a/auto_examples/surface_analyses/plot_flatmap_distortion.html
+++ b/auto_examples/surface_analyses/plot_flatmap_distortion.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Flatmap Distortion &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
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-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Flatmap Distortion &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Plot and Use Subsurface Tools" href="plot_subsurfaces.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-flatmap-distortion-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-flatmap-distortion-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="flatmap-distortion">
-<span id="sphx-glr-auto-examples-surface-analyses-plot-flatmap-distortion-py"></span><h1>Flatmap Distortion<a class="headerlink" href="#flatmap-distortion" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-surface-analyses-plot-flatmap-distortion-py"></span><h1>Flatmap Distortion<a class="headerlink" href="#flatmap-distortion" title="Link to this heading">¶</a></h1>
 <p>Creating a flatmap from a folded cortical surface always introduces some
 distortion. This is similar to what happens when a map of the globe is flattened
 into a 2-D map like a Mercator projection. For the cortical surface the amount
@@ -61,25 +60,20 @@
 <li><img src="../../_images/sphx_glr_plot_flatmap_distortion_001.png" srcset="../../_images/sphx_glr_plot_flatmap_distortion_001.png" alt="plot flatmap distortion" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_flatmap_distortion_002.png" srcset="../../_images/sphx_glr_plot_flatmap_distortion_002.png" alt="plot flatmap distortion" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in true_divide
+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in divide
   vertratios /= np.bincount(self.polys.ravel(), minlength=len(self.ref))
 Generating distortion surface info...
-/home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in true_divide
+/home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in divide
   vertratios /= np.bincount(self.polys.ravel(), minlength=len(self.ref))
-/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
-/home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in true_divide
+/home/runner/work/pycortex/pycortex/cortex/polyutils/distortion.py:57: RuntimeWarning: invalid value encountered in divide
   vertratios /= np.bincount(self.polys.ravel(), minlength=len(self.ref))
-/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
 Generating distortion surface info...
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">from</span> <span class="nn">cortex.polyutils</span> <span class="kn">import</span> <span class="n">Distortion</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
@@ -125,14 +119,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  30.161 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-surface-analyses-plot-flatmap-distortion-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/3c5f6f5da98c420a04d0752d32c918b0/plot_flatmap_distortion.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_flatmap_distortion.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 23.561 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-surface-analyses-plot-flatmap-distortion-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/3c5f6f5da98c420a04d0752d32c918b0/plot_flatmap_distortion.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_flatmap_distortion.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
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@@ -173,20 +167,23 @@ <h3>Navigation</h3>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
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       <li>Next: <a href="plot_subsurfaces.html" title="next chapter">Plot and Use Subsurface Tools</a></li>
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+<search id="searchbox" style="display: none" role="search">
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@@ -213,8 +212,8 @@ <h3 id="searchlabel">Quick search</h3>
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-<script>$('#searchbox').show(0);</script>
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@@ -228,11 +227,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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+      &#169;2012, James Gao.
       
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/auto_examples/surface_analyses/plot_flatmap_distortion.rst.txt"
diff --git a/auto_examples/surface_analyses/plot_geodesic_distance.html b/auto_examples/surface_analyses/plot_geodesic_distance.html
index 2808a3c41..61a6d7461 100644
--- a/auto_examples/surface_analyses/plot_geodesic_distance.html
+++ b/auto_examples/surface_analyses/plot_geodesic_distance.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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@@ -24,8 +22,9 @@
    
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@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-geodesic-distance-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-geodesic-distance-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plotting-geodesic-distances">
-<span id="sphx-glr-auto-examples-surface-analyses-plot-geodesic-distance-py"></span><h1>Plotting Geodesic Distances<a class="headerlink" href="#plotting-geodesic-distances" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-surface-analyses-plot-geodesic-distance-py"></span><h1>Plotting Geodesic Distances<a class="headerlink" href="#plotting-geodesic-distances" title="Link to this heading">¶</a></h1>
 <p>This plots the distances (in mm) between a vertex or set of vertices and
 all other vertices on a surface. These two operations take the exact same
 amount of time to run.</p>
@@ -57,23 +56,16 @@
 <li><img src="../../_images/sphx_glr_plot_geodesic_distance_001.png" srcset="../../_images/sphx_glr_plot_geodesic_distance_001.png" alt="plot geodesic distance" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_geodesic_distance_002.png" srcset="../../_images/sphx_glr_plot_geodesic_distance_002.png" alt="plot geodesic distance" class = "sphx-glr-multi-img"/></li>
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+<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
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 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">cortex.polyutils</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
@@ -113,14 +105,14 @@
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/6f21d9b4cf1e506c27a0e3ae52a74bce/plot_geodesic_distance.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_geodesic_distance.py</span></code></a></p>
+</div>
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-<li class="toctree-l3"><a class="reference internal" href="plot_interpolate_data.html">Interpolate Data</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
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@@ -216,11 +213,11 @@ <h3 id="searchlabel">Quick search</h3>
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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diff --git a/auto_examples/surface_analyses/plot_geodesic_path.html b/auto_examples/surface_analyses/plot_geodesic_path.html
index 64565c7eb..863473186 100644
--- a/auto_examples/surface_analyses/plot_geodesic_path.html
+++ b/auto_examples/surface_analyses/plot_geodesic_path.html
@@ -1,22 +1,20 @@
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@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-geodesic-path-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-geodesic-path-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plotting-geodesic-paths">
-<span id="sphx-glr-auto-examples-surface-analyses-plot-geodesic-path-py"></span><h1>Plotting Geodesic Paths<a class="headerlink" href="#plotting-geodesic-paths" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-surface-analyses-plot-geodesic-path-py"></span><h1>Plotting Geodesic Paths<a class="headerlink" href="#plotting-geodesic-paths" title="Link to this heading">¶</a></h1>
 <p>This will plot a geodesic path between two vertices on the cortical surface.
 This path is based on geodesic distances across the surface. The path starts
 at the given endpoint and selects the neighbor of that point in the surface
@@ -52,19 +51,14 @@
 <p>All you need to do is supply a surface object and two vertices on that surface
 and you can find the geodesic path. This script additionally makes a plot to
 show all of the vertices listed in the path.</p>
-<img src="../../_images/sphx_glr_plot_geodesic_path_001.png" srcset="../../_images/sphx_glr_plot_geodesic_path_001.png" alt="plot geodesic path" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
-Failed to get connection
-** (inkscape:5462): CRITICAL **: 01:32:15.597: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5462): CRITICAL **: 01:32:15.597: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5462): CRITICAL **: 01:32:15.597: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_geodesic_path_001.png" srcset="../../_images/sphx_glr_plot_geodesic_path_001.png" alt="plot geodesic path" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">cortex.polyutils</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
@@ -75,6 +69,8 @@
 <span class="n">surfs</span> <span class="o">=</span> <span class="p">[</span><span class="n">cortex</span><span class="o">.</span><span class="n">polyutils</span><span class="o">.</span><span class="n">Surface</span><span class="p">(</span><span class="o">*</span><span class="n">d</span><span class="p">)</span>
          <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s2">&quot;fiducial&quot;</span><span class="p">)]</span>
 <span class="n">numl</span> <span class="o">=</span> <span class="n">surfs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">pts</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+<span class="n">numr</span> <span class="o">=</span> <span class="n">surfs</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">pts</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+<span class="n">num_vertices</span> <span class="o">=</span> <span class="n">numl</span> <span class="o">+</span> <span class="n">numr</span>
 
 <span class="c1"># Now we need to pick the start and end points of the line we will draw</span>
 <span class="n">pt_a</span> <span class="o">=</span> <span class="mi">100</span>
@@ -84,25 +80,25 @@
 <span class="n">path</span> <span class="o">=</span> <span class="n">surfs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">geodesic_path</span><span class="p">(</span><span class="n">pt_a</span><span class="p">,</span> <span class="n">pt_b</span><span class="p">)</span>
 
 <span class="c1"># In order to plot this on the cortical surface, we need an array that is the</span>
-<span class="c1"># same size as the number of vertices in the left hemisphere</span>
-<span class="n">path_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">numl</span><span class="p">)</span>
+<span class="c1"># same size as the number of vertices</span>
+<span class="n">path_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">num_vertices</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
 <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">path</span><span class="p">:</span>
     <span class="n">path_data</span><span class="p">[</span><span class="n">v</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
 
 <span class="c1"># And now plot these distances onto the cortical surface</span>
-<span class="n">path_verts</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Vertex</span><span class="p">(</span><span class="n">path_data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s2">&quot;Blues_r&quot;</span><span class="p">)</span>
-<span class="n">cortex</span><span class="o">.</span><span class="n">quickshow</span><span class="p">(</span><span class="n">path_verts</span><span class="p">,</span> <span class="n">with_colorbar</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+<span class="n">path_verts</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Vertex</span><span class="p">(</span><span class="n">path_data</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s2">&quot;Reds&quot;</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+<span class="n">cortex</span><span class="o">.</span><span class="n">quickshow</span><span class="p">(</span><span class="n">path_verts</span><span class="p">,</span> <span class="n">with_colorbar</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">with_curvature</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  8.814 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-surface-analyses-plot-geodesic-path-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/2c1d4ccc800c14e88c119609426fa416/plot_geodesic_path.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_geodesic_path.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 7.153 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-surface-analyses-plot-geodesic-path-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/f23fbcea3c616b715df90ee0cbac9bdf/plot_geodesic_path.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_geodesic_path.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/2c1d4ccc800c14e88c119609426fa416/plot_geodesic_path.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_geodesic_path.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -143,20 +139,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_tissots_indicatrix.html">Tissot’s Indicatrix</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Plotting Geodesic Paths</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_geodesic_distance.html">Plotting Geodesic Distances</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_flatmap_distortion.html">Flatmap Distortion</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_subsurfaces.html">Plot and Use Subsurface Tools</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_interpolate_data.html">Interpolate Data</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -169,13 +168,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Surface Analysis Examples</a><ul>
       <li>Previous: <a href="plot_tissots_indicatrix.html" title="previous chapter">Tissot’s Indicatrix</a></li>
       <li>Next: <a href="plot_geodesic_distance.html" title="next chapter">Plotting Geodesic Distances</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -183,8 +184,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -198,11 +199,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/surface_analyses/plot_geodesic_path.rst.txt"
diff --git a/auto_examples/surface_analyses/plot_interpolate_data.html b/auto_examples/surface_analyses/plot_interpolate_data.html
index 753969566..9cb52b7a0 100644
--- a/auto_examples/surface_analyses/plot_interpolate_data.html
+++ b/auto_examples/surface_analyses/plot_interpolate_data.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Interpolate Data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Interpolate Data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Get Vertices for an ROI" href="../utils/plot_get_roi_vertices.html" />
+    <link rel="next" title="Utility Examples" href="../utils/index.html" />
     <link rel="prev" title="Plot and Use Subsurface Tools" href="plot_subsurfaces.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,25 +38,17 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-interpolate-data-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-interpolate-data-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="interpolate-data">
-<span id="sphx-glr-auto-examples-surface-analyses-plot-interpolate-data-py"></span><h1>Interpolate Data<a class="headerlink" href="#interpolate-data" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-surface-analyses-plot-interpolate-data-py"></span><h1>Interpolate Data<a class="headerlink" href="#interpolate-data" title="Link to this heading">¶</a></h1>
 <p>In this example we show how to interpolate data from a sparse collection of points
 to all the points in the cortical surface.</p>
 <p>The method used here is biharmonic interpolation, which finds the solution with
 the minimum squared Laplacian (fourth derivative) that still passes through all
 the selected points. This is similar to thin plate splines.</p>
-<img src="../../_images/sphx_glr_plot_interpolate_data_001.png" srcset="../../_images/sphx_glr_plot_interpolate_data_001.png" alt="plot interpolate data" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
-</pre></div>
-</div>
-<div class="line-block">
-<div class="line"><br /></div>
-</div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<img src="../../_images/sphx_glr_plot_interpolate_data_001.png" srcset="../../_images/sphx_glr_plot_interpolate_data_001.png" alt="plot interpolate data" class = "sphx-glr-single-img"/><div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">from</span> <span class="nn">cortex.polyutils</span> <span class="kn">import</span> <span class="n">Surface</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -107,14 +98,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  15.640 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-surface-analyses-plot-interpolate-data-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/37fd1e74f57ee9d9d970be8b602dc355/plot_interpolate_data.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_interpolate_data.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 11.818 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-surface-analyses-plot-interpolate-data-py">
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 <p><a class="reference download internal" download="" href="../../_downloads/638db29a2498956b03e341d19f7c71df/plot_interpolate_data.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_interpolate_data.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/37fd1e74f57ee9d9d970be8b602dc355/plot_interpolate_data.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_interpolate_data.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -155,20 +146,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_tissots_indicatrix.html">Tissot’s Indicatrix</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_geodesic_path.html">Plotting Geodesic Paths</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_geodesic_distance.html">Plotting Geodesic Distances</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_flatmap_distortion.html">Flatmap Distortion</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_subsurfaces.html">Plot and Use Subsurface Tools</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Interpolate Data</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
 </ul>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
 </ul>
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 </ul>
@@ -181,13 +175,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Surface Analysis Examples</a><ul>
       <li>Previous: <a href="plot_subsurfaces.html" title="previous chapter">Plot and Use Subsurface Tools</a></li>
-      <li>Next: <a href="../utils/plot_get_roi_vertices.html" title="next chapter">Get Vertices for an ROI</a></li>
+      <li>Next: <a href="../utils/index.html" title="next chapter">Utility Examples</a></li>
+  </ul></li>
   </ul></li>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -195,8 +191,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -210,11 +206,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/surface_analyses/plot_interpolate_data.rst.txt"
diff --git a/auto_examples/surface_analyses/plot_subsurfaces.html b/auto_examples/surface_analyses/plot_subsurfaces.html
index 3034c3d3e..4755f9754 100644
--- a/auto_examples/surface_analyses/plot_subsurfaces.html
+++ b/auto_examples/surface_analyses/plot_subsurfaces.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Plot and Use Subsurface Tools &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Plot and Use Subsurface Tools &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Interpolate Data" href="plot_interpolate_data.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,13 +38,13 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-subsurfaces-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-subsurfaces-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="plot-and-use-subsurface-tools">
-<span id="sphx-glr-auto-examples-surface-analyses-plot-subsurfaces-py"></span><h1>Plot and Use Subsurface Tools<a class="headerlink" href="#plot-and-use-subsurface-tools" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-surface-analyses-plot-subsurfaces-py"></span><h1>Plot and Use Subsurface Tools<a class="headerlink" href="#plot-and-use-subsurface-tools" title="Link to this heading">¶</a></h1>
 <p>Subsurfaces can be used for efficient operations on subsets of cortical surface</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">tempfile</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">tempfile</span>
 
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
@@ -61,44 +60,34 @@
 </pre></div>
 </div>
 <p>create subsurface</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">center</span> <span class="o">=</span> <span class="mi">125000</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">center</span> <span class="o">=</span> <span class="mi">125000</span>
 <span class="n">radius</span> <span class="o">=</span> <span class="mi">7</span>
 
 <span class="n">patch</span> <span class="o">=</span> <span class="n">left_surface</span><span class="o">.</span><span class="n">get_geodesic_patch</span><span class="p">(</span><span class="n">center</span><span class="p">,</span> <span class="n">radius</span><span class="o">=</span><span class="n">radius</span><span class="p">)</span>
 <span class="n">subsurface</span> <span class="o">=</span> <span class="n">left_surface</span><span class="o">.</span><span class="n">create_subsurface</span><span class="p">(</span><span class="n">vertex_mask</span><span class="o">=</span><span class="n">patch</span><span class="p">[</span><span class="s1">&#39;vertex_mask&#39;</span><span class="p">])</span>
 </pre></div>
 </div>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
-</pre></div>
-</div>
 <p>plot data on subsurface</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">data</span> <span class="o">=</span> <span class="n">subsurface</span><span class="o">.</span><span class="n">geodesic_distance</span><span class="p">([</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="mi">20</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">data</span> <span class="o">=</span> <span class="n">subsurface</span><span class="o">.</span><span class="n">geodesic_distance</span><span class="p">([</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="mi">20</span>
 <span class="n">dataset</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Vertex</span><span class="p">(</span><span class="n">subsurface</span><span class="o">.</span><span class="n">lift_subsurface_data</span><span class="p">(</span><span class="n">data</span><span class="p">),</span> <span class="n">subject</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;viridis&#39;</span><span class="p">)</span>
 <span class="n">cortex</span><span class="o">.</span><span class="n">quickshow</span><span class="p">(</span><span class="n">dataset</span><span class="p">)</span>
 <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;example subsurface data&#39;</span><span class="p">)</span>
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<img src="../../_images/sphx_glr_plot_subsurfaces_001.png" srcset="../../_images/sphx_glr_plot_subsurfaces_001.png" alt="example subsurface data" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
-Failed to get connection
-** (inkscape:5499): CRITICAL **: 01:33:03.252: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5499): CRITICAL **: 01:33:03.252: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5499): CRITICAL **: 01:33:03.252: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_subsurfaces_001.png" srcset="../../_images/sphx_glr_plot_subsurfaces_001.png" alt="example subsurface data" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <p>plot subsurface as gif</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">f</span><span class="p">,</span> <span class="n">path</span> <span class="o">=</span> <span class="n">tempfile</span><span class="o">.</span><span class="n">mkstemp</span><span class="p">()</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">f</span><span class="p">,</span> <span class="n">path</span> <span class="o">=</span> <span class="n">tempfile</span><span class="o">.</span><span class="n">mkstemp</span><span class="p">()</span>
 <span class="n">path</span> <span class="o">=</span> <span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;.gif&#39;</span>
 <span class="c1"># subsurface.plot_subsurface_rotating_gif(path=path)</span>
 </pre></div>
 </div>
 <img alt="../../_images/example_subsurface.gif" src="../../_images/example_subsurface.gif" />
 <p>create many patches</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">patches</span> <span class="o">=</span> <span class="n">left_surface</span><span class="o">.</span><span class="n">get_geodesic_patches</span><span class="p">(</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">patches</span> <span class="o">=</span> <span class="n">left_surface</span><span class="o">.</span><span class="n">get_geodesic_patches</span><span class="p">(</span>
     <span class="n">seeds</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">150000</span><span class="p">,</span> <span class="mi">1000</span><span class="p">),</span>
     <span class="n">radius</span><span class="o">=</span><span class="mi">8</span><span class="p">,</span>
 <span class="p">)</span>
@@ -115,17 +104,12 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<img src="../../_images/sphx_glr_plot_subsurfaces_002.png" srcset="../../_images/sphx_glr_plot_subsurfaces_002.png" alt="patches" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
-Failed to get connection
-** (inkscape:5506): CRITICAL **: 01:33:09.549: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5506): CRITICAL **: 01:33:09.549: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5506): CRITICAL **: 01:33:09.549: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+<img src="../../_images/sphx_glr_plot_subsurfaces_002.png" srcset="../../_images/sphx_glr_plot_subsurfaces_002.png" alt="patches" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <p>create geodesic strip patch</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">patch</span> <span class="o">=</span> <span class="n">left_surface</span><span class="o">.</span><span class="n">get_geodesic_strip_patch</span><span class="p">(</span><span class="n">v0</span><span class="o">=</span><span class="mi">70000</span><span class="p">,</span> <span class="n">v1</span><span class="o">=</span><span class="mi">125000</span><span class="p">,</span> <span class="n">radius</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">patch</span> <span class="o">=</span> <span class="n">left_surface</span><span class="o">.</span><span class="n">get_geodesic_strip_patch</span><span class="p">(</span><span class="n">v0</span><span class="o">=</span><span class="mi">70000</span><span class="p">,</span> <span class="n">v1</span><span class="o">=</span><span class="mi">125000</span><span class="p">,</span> <span class="n">radius</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
 
 <span class="n">dataset</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Vertex</span><span class="p">(</span><span class="n">patch</span><span class="p">[</span><span class="s1">&#39;vertex_mask&#39;</span><span class="p">],</span> <span class="n">subject</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">1</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;viridis&#39;</span><span class="p">)</span>
 <span class="n">cortex</span><span class="o">.</span><span class="n">quickshow</span><span class="p">(</span><span class="n">dataset</span><span class="p">)</span>
@@ -148,31 +132,22 @@
 <li><img src="../../_images/sphx_glr_plot_subsurfaces_004.png" srcset="../../_images/sphx_glr_plot_subsurfaces_004.png" alt="first coordinate, distance along central geodesic axis" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_subsurfaces_005.png" srcset="../../_images/sphx_glr_plot_subsurfaces_005.png" alt="second coordinate, distance from central geodesic axis" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
-Failed to get connection
-** (inkscape:5514): CRITICAL **: 01:33:20.494: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5514): CRITICAL **: 01:33:20.494: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
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+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/d1b7d62a14297494745367355b59d04d/plot_subsurfaces.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_subsurfaces.py</span></code></a></p>
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@@ -213,20 +188,23 @@ <h3>Navigation</h3>
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-<li class="toctree-l3"><a class="reference internal" href="plot_interpolate_data.html">Interpolate Data</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Surface Analysis Examples</a></li>
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+  <li><a href="index.html">Surface Analysis Examples</a><ul>
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       <li>Next: <a href="plot_interpolate_data.html" title="next chapter">Interpolate Data</a></li>
   </ul></li>
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+  </ul></li>
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+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
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@@ -253,8 +233,8 @@ <h3 id="searchlabel">Quick search</h3>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -268,11 +248,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/auto_examples/surface_analyses/plot_subsurfaces.rst.txt"
diff --git a/auto_examples/surface_analyses/plot_tissots_indicatrix.html b/auto_examples/surface_analyses/plot_tissots_indicatrix.html
index 7bb99e42c..c5d142c77 100644
--- a/auto_examples/surface_analyses/plot_tissots_indicatrix.html
+++ b/auto_examples/surface_analyses/plot_tissots_indicatrix.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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-    <title>Tissot’s Indicatrix &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <link rel="prev" title="Plot Example Retinotopy Flatmaps" href="../quickstart/plot_retinotopy_flatmap.html" />
+    <link rel="prev" title="Surface Analysis Examples" href="index.html" />
    
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+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
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@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-tissots-indicatrix-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-surface-analyses-plot-tissots-indicatrix-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="tissot-s-indicatrix">
-<span id="sphx-glr-auto-examples-surface-analyses-plot-tissots-indicatrix-py"></span><h1>Tissot’s Indicatrix<a class="headerlink" href="#tissot-s-indicatrix" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-surface-analyses-plot-tissots-indicatrix-py"></span><h1>Tissot’s Indicatrix<a class="headerlink" href="#tissot-s-indicatrix" title="Link to this heading">¶</a></h1>
 <p>Creating a flatmap from a folded cortical surface always introduces some
 distortion. This is similar to what happens when a map of the globe is flattened
 into a 2-D map like a Mercator projection. For the cortical surface the amount
@@ -57,10 +56,7 @@
 flattened cortical surface.</p>
 <p>This technique is traditionally used to characterize and visualize distortions
 introduced by flattening the globe onto a map:</p>
-<img src="../../_images/sphx_glr_plot_tissots_indicatrix_001.png" srcset="../../_images/sphx_glr_plot_tissots_indicatrix_001.png" alt="plot tissots indicatrix" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Generating tissots_indicatrix surface info...
-/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py:322: SparseEfficiencyWarning: splu requires CSC matrix format
-  warn(&#39;splu requires CSC matrix format&#39;, SparseEfficiencyWarning)
+<img src="../../_images/sphx_glr_plot_tissots_indicatrix_001.png" srcset="../../_images/sphx_glr_plot_tissots_indicatrix_001.png" alt="plot tissots indicatrix" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Generating tissots_indicatrix surface info...
 Adding vertex 88060..
 Adding vertex 93467..
 Adding vertex 51981..
@@ -210,14 +206,12 @@
 Adding vertex 6044..
 Adding vertex 67298..
 Adding vertex 40064..
-/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/numpy/lib/npyio.py:713: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify &#39;dtype=object&#39; when creating the ndarray.
-  val = np.asanyarray(val)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
 <span class="n">tissot</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">get_surfinfo</span><span class="p">(</span><span class="s2">&quot;S1&quot;</span><span class="p">,</span> <span class="s2">&quot;tissots_indicatrix&quot;</span><span class="p">,</span> <span class="n">radius</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">30</span><span class="p">)</span>
@@ -228,14 +222,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  33.731 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-surface-analyses-plot-tissots-indicatrix-py">
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-<p><a class="reference download internal" download="" href="../../_downloads/3b8551027c0ebeddec92c73b044f4182/plot_tissots_indicatrix.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_tissots_indicatrix.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 25.962 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-surface-analyses-plot-tissots-indicatrix-py">
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 <p><a class="reference download internal" download="" href="../../_downloads/71eedfa1e15eeae1d50e837a5d00378d/plot_tissots_indicatrix.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_tissots_indicatrix.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/3b8551027c0ebeddec92c73b044f4182/plot_tissots_indicatrix.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_tissots_indicatrix.py</span></code></a></p>
+</div>
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@@ -276,20 +270,23 @@ <h3>Navigation</h3>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
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-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Tissot’s Indicatrix</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_geodesic_path.html">Plotting Geodesic Paths</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_geodesic_distance.html">Plotting Geodesic Distances</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
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+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/auto_examples/surface_analyses/plot_tissots_indicatrix.rst.txt"
diff --git a/auto_examples/surface_analyses/sg_execution_times.html b/auto_examples/surface_analyses/sg_execution_times.html
index 7e7730b5d..f812bc597 100644
--- a/auto_examples/surface_analyses/sg_execution_times.html
+++ b/auto_examples/surface_analyses/sg_execution_times.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Computation times &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Computation times &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,41 +35,55 @@
           <div class="body" role="main">
             
   <section id="computation-times">
-<span id="sphx-glr-auto-examples-surface-analyses-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Permalink to this headline">¶</a></h1>
-<p><strong>02:06.044</strong> total execution time for <strong>auto_examples_surface_analyses</strong> files:</p>
-<table class="docutils align-default">
-<colgroup>
-<col style="width: 85%" />
-<col style="width: 9%" />
-<col style="width: 6%" />
-</colgroup>
-<tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_tissots_indicatrix.html#sphx-glr-auto-examples-surface-analyses-plot-tissots-indicatrix-py"><span class="std std-ref">Tissot’s Indicatrix</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_tissots_indicatrix.py</span></code>)</p></td>
-<td><p>00:33.731</p></td>
-<td><p>0.0 MB</p></td>
+<span id="sphx-glr-auto-examples-surface-analyses-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>01:42.654</strong> total execution time for 6 files <strong>from auto_examples/surface_analyses</strong>:</p>
+<div class="docutils container">
+<style scoped>
+<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+<link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+</style>
+<script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+<script type="text/javascript" class="init">
+$(document).ready( function () {
+    $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+} );
+</script><table class="table table-striped sg-datatable docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_flatmap_distortion.html#sphx-glr-auto-examples-surface-analyses-plot-flatmap-distortion-py"><span class="std std-ref">Flatmap Distortion</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_flatmap_distortion.py</span></code>)</p></td>
-<td><p>00:30.161</p></td>
-<td><p>0.0 MB</p></td>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_tissots_indicatrix.html#sphx-glr-auto-examples-surface-analyses-plot-tissots-indicatrix-py"><span class="std std-ref">Tissot’s Indicatrix</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_tissots_indicatrix.py</span></code>)</p></td>
+<td><p>00:25.962</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_subsurfaces.html#sphx-glr-auto-examples-surface-analyses-plot-subsurfaces-py"><span class="std std-ref">Plot and Use Subsurface Tools</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_subsurfaces.py</span></code>)</p></td>
-<td><p>00:22.744</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_flatmap_distortion.html#sphx-glr-auto-examples-surface-analyses-plot-flatmap-distortion-py"><span class="std std-ref">Flatmap Distortion</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_flatmap_distortion.py</span></code>)</p></td>
+<td><p>00:23.561</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_interpolate_data.html#sphx-glr-auto-examples-surface-analyses-plot-interpolate-data-py"><span class="std std-ref">Interpolate Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_interpolate_data.py</span></code>)</p></td>
-<td><p>00:15.640</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_subsurfaces.html#sphx-glr-auto-examples-surface-analyses-plot-subsurfaces-py"><span class="std std-ref">Plot and Use Subsurface Tools</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_subsurfaces.py</span></code>)</p></td>
+<td><p>00:19.551</p></td>
+<td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="plot_geodesic_distance.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-distance-py"><span class="std std-ref">Plotting Geodesic Distances</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_geodesic_distance.py</span></code>)</p></td>
-<td><p>00:14.953</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>00:14.610</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_interpolate_data.html#sphx-glr-auto-examples-surface-analyses-plot-interpolate-data-py"><span class="std std-ref">Interpolate Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_interpolate_data.py</span></code>)</p></td>
+<td><p>00:11.818</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_geodesic_path.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-path-py"><span class="std std-ref">Plotting Geodesic Paths</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_geodesic_path.py</span></code>)</p></td>
-<td><p>00:08.814</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_geodesic_path.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-path-py"><span class="std std-ref">Plotting Geodesic Paths</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_geodesic_path.py</span></code>)</p></td>
+<td><p>00:07.153</p></td>
+<td><p>0.0</p></td>
 </tr>
 </tbody>
 </table>
+</div>
 </section>
 
 
@@ -120,7 +133,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -128,8 +141,8 @@ <h3 id="searchlabel">Quick search</h3>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -143,11 +156,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/surface_analyses/sg_execution_times.rst.txt"
diff --git a/auto_examples/utils/index.html b/auto_examples/utils/index.html
new file mode 100644
index 000000000..4bb1aa3d5
--- /dev/null
+++ b/auto_examples/utils/index.html
@@ -0,0 +1,179 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Utility Examples &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="Get Vertices for an ROI" href="plot_get_roi_vertices.html" />
+    <link rel="prev" title="Interpolate Data" href="../surface_analyses/plot_interpolate_data.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
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+  
+  
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+  </head><body>
+  
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+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="utility-examples">
+<span id="sphx-glr-auto-examples-utils"></span><h1>Utility Examples<a class="headerlink" href="#utility-examples" title="Link to this heading">¶</a></h1>
+<p>Examples demonstrating how to do all sorts of beautiful things using pycortex.</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="In this example we show how to get the vertices that are inside an ROI that was defined in the ..."><img alt="" src="../../_images/sphx_glr_plot_get_roi_vertices_thumb.png" />
+<p><a class="reference internal" href="plot_get_roi_vertices.html#sphx-glr-auto-examples-utils-plot-get-roi-vertices-py"><span class="std std-ref">Get Vertices for an ROI</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Get Vertices for an ROI</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="The utility function get_vox_dist returns the distance from each voxel in some space to the nea..."><img alt="" src="../../_images/sphx_glr_plot_voxel_distance_from_surface_thumb.png" />
+<p><a class="reference internal" href="plot_voxel_distance_from_surface.html#sphx-glr-auto-examples-utils-plot-voxel-distance-from-surface-py"><span class="std std-ref">Voxel distance from surface</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Voxel distance from surface</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="The function mosaic plots all of the slices in a volume in a matplotlib figure. Good for quick ..."><img alt="" src="../../_images/sphx_glr_plot_mosaic_thumb.png" />
+<p><a class="reference internal" href="plot_mosaic.html#sphx-glr-auto-examples-utils-plot-mosaic-py"><span class="std std-ref">Mosaic plot</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Mosaic plot</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s..."><img alt="" src="../../_images/sphx_glr_subject_to_mni_thumb.png" />
+<p><a class="reference internal" href="subject_to_mni.html#sphx-glr-auto-examples-utils-subject-to-mni-py"><span class="std std-ref">Transform from Subject to MNI Space</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Transform from Subject to MNI Space</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Get proportion of each voxel that exists within a named ROI (this  constitutes a probability ma..."><img alt="" src="../../_images/sphx_glr_plot_roi_voxel_mask_thumb.png" />
+<p><a class="reference internal" href="plot_roi_voxel_mask.html#sphx-glr-auto-examples-utils-plot-roi-voxel-mask-py"><span class="std std-ref">Get ROI Voxel Mask</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Get ROI Voxel Mask</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Pycortex has built-in functionality for linearly transforming data to and from standard atlas s..."><img alt="" src="../../_images/sphx_glr_mni_to_subject_thumb.png" />
+<p><a class="reference internal" href="mni_to_subject.html#sphx-glr-auto-examples-utils-mni-to-subject-py"><span class="std std-ref">Transform from MNI to Subject Space</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Transform from MNI to Subject Space</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="The function cortex.export.plot_panels plots a number of 3d views of a given volume, in the sam..."><img alt="" src="../../_images/sphx_glr_multi_panels_plots_thumb.png" />
+<p><a class="reference internal" href="multi_panels_plots.html#sphx-glr-auto-examples-utils-multi-panels-plots-py"><span class="std std-ref">Multi-panels figures</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Multi-panels figures</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Create an index volume (similar to the aseg masks in freesurfer) with a different  integer inde..."><img alt="" src="../../_images/sphx_glr_plot_roi_voxel_index_volume_thumb.png" />
+<p><a class="reference internal" href="plot_roi_voxel_index_volume.html#sphx-glr-auto-examples-utils-plot-roi-voxel-index-volume-py"><span class="std std-ref">Get ROI Index Volume</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Get ROI Index Volume</div>
+</div></div><div class="toctree-wrapper compound">
+</div>
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
+
+
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+
+
+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3 current"><a class="current reference internal" href="#">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
+</ul>
+
+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  <li><a href="../index.html">Example Gallery</a><ul>
+      <li>Previous: <a href="../surface_analyses/plot_interpolate_data.html" title="previous chapter">Interpolate Data</a></li>
+      <li>Next: <a href="plot_get_roi_vertices.html" title="next chapter">Get Vertices for an ROI</a></li>
+  </ul></li>
+  </ul></li>
+</ul>
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+<search id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
+      <input type="submit" value="Go" />
+    </form>
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+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
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+        </div>
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+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
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+      <a href="../../_sources/auto_examples/utils/index.rst.txt"
+          rel="nofollow">Page source</a>
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+</html>
\ No newline at end of file
diff --git a/auto_examples/utils/mni_to_subject.html b/auto_examples/utils/mni_to_subject.html
index 144e32bdf..67141f5db 100644
--- a/auto_examples/utils/mni_to_subject.html
+++ b/auto_examples/utils/mni_to_subject.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
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+    <title>Transform from MNI to Subject Space &#8212; pycortex 1.2.8 documentation</title>
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@@ -24,8 +22,9 @@
    
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@@ -39,17 +38,17 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-utils-mni-to-subject-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-utils-mni-to-subject-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="transform-from-mni-to-subject-space">
-<span id="sphx-glr-auto-examples-utils-mni-to-subject-py"></span><h1>Transform from MNI to Subject Space<a class="headerlink" href="#transform-from-mni-to-subject-space" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-utils-mni-to-subject-py"></span><h1>Transform from MNI to Subject Space<a class="headerlink" href="#transform-from-mni-to-subject-space" title="Link to this heading">¶</a></h1>
 <p>Pycortex has built-in functionality for linearly transforming data to and from
 standard atlas spaces (e.g. MNI-152). This functionality is built on top of FSL.</p>
 <p>This example shows how to create a transform from some subject functional space
 to MNI space (the same as in subject_to_mni.py), and how to use that to put data
 into subject space from MNI space.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 
 <span class="c1"># First let&#39;s do this &quot;manually&quot;, using cortex.mni</span>
 <span class="kn">from</span> <span class="nn">cortex</span> <span class="kn">import</span> <span class="n">mni</span>
@@ -75,7 +74,7 @@
                                             <span class="n">data</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="n">s1_to_mni</span><span class="p">)</span>
 <span class="c1"># subject_data is a nibabel Nifti1Image</span>
 
-<span class="n">subject_data_vol</span> <span class="o">=</span> <span class="n">mni_data</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span> <span class="c1"># the actual array, shape=(100,100,31)</span>
+<span class="n">subject_data_vol</span> <span class="o">=</span> <span class="n">mni_data</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span> <span class="c1"># the actual array, shape=(100,100,31)</span>
 
 <span class="c1"># That was the manual method. pycortex can also cache these transforms for you</span>
 <span class="c1"># if you get them using the pycortex database</span>
@@ -83,14 +82,13 @@
 <span class="c1"># this is the same as s1_to_mni, but will return instantly on subsequent calls</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-mni-to-subject-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/2b386e6cf21fd3a3a1c01882f5073cd7/mni_to_subject.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">mni_to_subject.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-mni-to-subject-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/c74b122a2f122b3931ba518c8dce3b97/mni_to_subject.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">mni_to_subject.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/2b386e6cf21fd3a3a1c01882f5073cd7/mni_to_subject.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">mni_to_subject.py</span></code></a></p>
+</div>
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 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
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@@ -131,22 +129,23 @@ <h3>Navigation</h3>
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-<li class="toctree-l3"><a class="reference internal" href="plot_get_roi_vertices.html">Get Vertices for an ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_voxel_distance_from_surface.html">Voxel distance from surface</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_mosaic.html">Mosaic plot</a></li>
-<li class="toctree-l3"><a class="reference internal" href="subject_to_mni.html">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_mask.html">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multi_panels_plots.html">Multi-panels figures</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_index_volume.html">Get ROI Index Volume</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
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+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
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+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Utility Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
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@@ -159,13 +158,15 @@ <h3>Related Topics</h3>
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   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Utility Examples</a><ul>
       <li>Previous: <a href="plot_roi_voxel_mask.html" title="previous chapter">Get ROI Voxel Mask</a></li>
       <li>Next: <a href="multi_panels_plots.html" title="next chapter">Multi-panels figures</a></li>
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+  </ul></li>
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-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -173,8 +174,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -188,11 +189,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
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diff --git a/auto_examples/utils/multi_panels_plots.html b/auto_examples/utils/multi_panels_plots.html
index 846c0dcd3..bb648e9ca 100644
--- a/auto_examples/utils/multi_panels_plots.html
+++ b/auto_examples/utils/multi_panels_plots.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Multi-panels figures &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Multi-panels figures &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Get ROI Index Volume" href="plot_roi_voxel_index_volume.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,24 +38,24 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-utils-multi-panels-plots-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-utils-multi-panels-plots-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="multi-panels-figures">
-<span id="sphx-glr-auto-examples-utils-multi-panels-plots-py"></span><h1>Multi-panels figures<a class="headerlink" href="#multi-panels-figures" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-utils-multi-panels-plots-py"></span><h1>Multi-panels figures<a class="headerlink" href="#multi-panels-figures" title="Link to this heading">¶</a></h1>
 <p>The function <cite>cortex.export.plot_panels</cite> plots a number of 3d views of a given
 volume, in the same matplotlib figure. It does that by saving a temporary image
 for each view, and then aggregating them in the same figure.</p>
 <p>The function needs to be run on a system with a display, since it will launch
 a webgl viewer. The best way to get the expected results is to keep the webgl
 viewer visible during the process.</p>
-<p>The selection of views and the aggregation is controled by a list of “panels”.
+<p>The selection of views and the aggregation is controlled by a list of “panels”.
 Examples of panels can be imported with:</p>
 <blockquote>
 <div><p>from cortex.export import params_flatmap_lateral_medial
 from cortex.export import params_occipital_triple_view</p>
 </div></blockquote>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
 <span class="kn">import</span> <span class="nn">tempfile</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
@@ -68,13 +67,13 @@
 </pre></div>
 </div>
 <p>create some artificial data</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">shape</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">get_xfm</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s1">&#39;identity&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">shape</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">shape</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">get_xfm</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="s1">&#39;identity&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">shape</span>
 <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">product</span><span class="p">(</span><span class="n">shape</span><span class="p">))</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">shape</span><span class="p">)</span>
 <span class="n">volume</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Volume</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="s1">&#39;identity&#39;</span><span class="p">)</span>
 </pre></div>
 </div>
 <p>Show examples of multi-panels figures</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">params</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">export</span><span class="o">.</span><span class="n">params_flatmap_lateral_medial</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">params</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">export</span><span class="o">.</span><span class="n">params_flatmap_lateral_medial</span>
 <span class="n">cortex</span><span class="o">.</span><span class="n">export</span><span class="o">.</span><span class="n">plot_panels</span><span class="p">(</span><span class="n">volume</span><span class="p">,</span> <span class="o">**</span><span class="n">params</span><span class="p">)</span>
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 
@@ -84,7 +83,7 @@
 </pre></div>
 </div>
 <p>List all predefined angles</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">base_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">tempfile</span><span class="o">.</span><span class="n">mkdtemp</span><span class="p">(),</span> <span class="s1">&#39;fig&#39;</span><span class="p">)</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">base_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">tempfile</span><span class="o">.</span><span class="n">mkdtemp</span><span class="p">(),</span> <span class="s1">&#39;fig&#39;</span><span class="p">)</span>
 <span class="n">list_angles</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">cortex</span><span class="o">.</span><span class="n">export</span><span class="o">.</span><span class="n">save_views</span><span class="o">.</span><span class="n">angle_view_params</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
 
 <span class="n">filenames</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">export</span><span class="o">.</span><span class="n">save_3d_views</span><span class="p">(</span>
@@ -99,7 +98,7 @@
 </pre></div>
 </div>
 <p>List all predefined surfaces</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">base_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">tempfile</span><span class="o">.</span><span class="n">mkdtemp</span><span class="p">(),</span> <span class="s1">&#39;fig&#39;</span><span class="p">)</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="n">base_name</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">tempfile</span><span class="o">.</span><span class="n">mkdtemp</span><span class="p">(),</span> <span class="s1">&#39;fig&#39;</span><span class="p">)</span>
 <span class="n">list_surfaces</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">cortex</span><span class="o">.</span><span class="n">export</span><span class="o">.</span><span class="n">save_views</span><span class="o">.</span><span class="n">unfold_view_params</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
 
 <span class="n">filenames</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">export</span><span class="o">.</span><span class="n">save_3d_views</span><span class="p">(</span>
@@ -114,14 +113,13 @@
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+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/55ff50ca9850387e3d30490b06ab18eb/multi_panels_plots.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">multi_panels_plots.py</span></code></a></p>
+</div>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
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-<li class="toctree-l3"><a class="reference internal" href="plot_voxel_distance_from_surface.html">Voxel distance from surface</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_mosaic.html">Mosaic plot</a></li>
-<li class="toctree-l3"><a class="reference internal" href="subject_to_mni.html">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_mask.html">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mni_to_subject.html">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Multi-panels figures</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_index_volume.html">Get ROI Index Volume</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
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@@ -190,13 +189,15 @@ <h3>Related Topics</h3>
 <ul>
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+  <li><a href="index.html">Utility Examples</a><ul>
       <li>Previous: <a href="mni_to_subject.html" title="previous chapter">Transform from MNI to Subject Space</a></li>
       <li>Next: <a href="plot_roi_voxel_index_volume.html" title="next chapter">Get ROI Index Volume</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
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-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -204,8 +205,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -219,11 +220,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/utils/multi_panels_plots.rst.txt"
diff --git a/auto_examples/utils/plot_get_roi_vertices.html b/auto_examples/utils/plot_get_roi_vertices.html
index dcccf93ee..822bc4f30 100644
--- a/auto_examples/utils/plot_get_roi_vertices.html
+++ b/auto_examples/utils/plot_get_roi_vertices.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Get Vertices for an ROI &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+
+    <title>Get Vertices for an ROI &#8212; pycortex 1.2.8 documentation</title>
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     <link rel="index" title="Index" href="../../genindex.html" />
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     <link rel="next" title="Voxel distance from surface" href="plot_voxel_distance_from_surface.html" />
-    <link rel="prev" title="Interpolate Data" href="../surface_analyses/plot_interpolate_data.html" />
+    <link rel="prev" title="Utility Examples" href="index.html" />
    
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,18 +38,15 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-get-roi-vertices-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-get-roi-vertices-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="get-vertices-for-an-roi">
-<span id="sphx-glr-auto-examples-utils-plot-get-roi-vertices-py"></span><h1>Get Vertices for an ROI<a class="headerlink" href="#get-vertices-for-an-roi" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-utils-plot-get-roi-vertices-py"></span><h1>Get Vertices for an ROI<a class="headerlink" href="#get-vertices-for-an-roi" title="Link to this heading">¶</a></h1>
 <p>In this example we show how to get the vertices that are inside an ROI that was
 defined in the SVG ROI file (see <span class="xref std std-doc">/rois.rst</span>).</p>
-<img src="../../_images/sphx_glr_plot_get_roi_vertices_001.png" srcset="../../_images/sphx_glr_plot_get_roi_vertices_001.png" alt="plot get roi vertices" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
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+<img src="../../_images/sphx_glr_plot_get_roi_vertices_001.png" srcset="../../_images/sphx_glr_plot_get_roi_vertices_001.png" alt="plot get roi vertices" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 
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@@ -58,7 +54,7 @@
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 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 
 <span class="c1"># get vertices for fusiform face area FFA in subject S1</span>
 <span class="n">roi_verts</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">get_roi_verts</span><span class="p">(</span><span class="s1">&#39;S1&#39;</span><span class="p">,</span> <span class="s1">&#39;FFA&#39;</span><span class="p">)</span>
@@ -75,14 +71,14 @@
 <span class="n">cortex</span><span class="o">.</span><span class="n">quickshow</span><span class="p">(</span><span class="n">ffa_map</span><span class="p">)</span>
 </pre></div>
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+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 4.012 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-get-roi-vertices-py">
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 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/a74c444126f74fb5bfa75f11261550bc/plot_get_roi_vertices.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_get_roi_vertices.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
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@@ -123,22 +119,23 @@ <h3>Navigation</h3>
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+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
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-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Get Vertices for an ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_voxel_distance_from_surface.html">Voxel distance from surface</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_mosaic.html">Mosaic plot</a></li>
-<li class="toctree-l3"><a class="reference internal" href="subject_to_mni.html">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_mask.html">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mni_to_subject.html">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multi_panels_plots.html">Multi-panels figures</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_index_volume.html">Get ROI Index Volume</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
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@@ -151,13 +148,15 @@ <h3>Related Topics</h3>
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   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="../surface_analyses/plot_interpolate_data.html" title="previous chapter">Interpolate Data</a></li>
+  <li><a href="index.html">Utility Examples</a><ul>
+      <li>Previous: <a href="index.html" title="previous chapter">Utility Examples</a></li>
       <li>Next: <a href="plot_voxel_distance_from_surface.html" title="next chapter">Voxel distance from surface</a></li>
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@@ -180,11 +179,11 @@ <h3 id="searchlabel">Quick search</h3>
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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diff --git a/auto_examples/utils/plot_mosaic.html b/auto_examples/utils/plot_mosaic.html
index 2b223f746..a0740ef05 100644
--- a/auto_examples/utils/plot_mosaic.html
+++ b/auto_examples/utils/plot_mosaic.html
@@ -1,22 +1,20 @@
-
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-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Mosaic plot &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Mosaic plot &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Transform from Subject to MNI Space" href="subject_to_mni.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,35 +38,24 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-mosaic-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-mosaic-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="mosaic-plot">
-<span id="sphx-glr-auto-examples-utils-plot-mosaic-py"></span><h1>Mosaic plot<a class="headerlink" href="#mosaic-plot" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-utils-plot-mosaic-py"></span><h1>Mosaic plot<a class="headerlink" href="#mosaic-plot" title="Link to this heading">¶</a></h1>
 <p>The function <cite>mosaic</cite> plots all of the slices in a volume in a matplotlib figure. Good for quick visualization or testing of volumes.</p>
 <ul class="sphx-glr-horizontal">
 <li><img src="../../_images/sphx_glr_plot_mosaic_001.png" srcset="../../_images/sphx_glr_plot_mosaic_001.png" alt="plot mosaic" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_mosaic_002.png" srcset="../../_images/sphx_glr_plot_mosaic_002.png" alt="plot mosaic" class = "sphx-glr-multi-img"/></li>
 <li><img src="../../_images/sphx_glr_plot_mosaic_003.png" srcset="../../_images/sphx_glr_plot_mosaic_003.png" alt="plot mosaic" class = "sphx-glr-multi-img"/></li>
 </ul>
-<p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/pycortex/pycortex/examples/utils/plot_mosaic.py:17: DeprecationWarning: get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).
-
-* deprecated from version: 3.0
-* Will raise &lt;class &#39;nibabel.deprecator.ExpiredDeprecationError&#39;&gt; as of version: 5.0
-  volume_arr = cortex.db.get_xfm(&#39;S1&#39;, &#39;fullhead&#39;).reference.get_data().T
-</pre></div>
-</div>
-<div class="line-block">
-<div class="line"><br /></div>
-</div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># sphinx_gallery_thumbnail_number = 3</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="c1"># sphinx_gallery_thumbnail_number = 3</span>
 
 <span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
 <span class="c1"># load reference functional image for test purposes</span>
-<span class="n">volume_arr</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">get_xfm</span><span class="p">(</span><span class="s1">&#39;S1&#39;</span><span class="p">,</span> <span class="s1">&#39;fullhead&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
+<span class="n">volume_arr</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">get_xfm</span><span class="p">(</span><span class="s1">&#39;S1&#39;</span><span class="p">,</span> <span class="s1">&#39;fullhead&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">reference</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span><span class="o">.</span><span class="n">T</span>
 <span class="c1"># volume_arr is a (31,100,100) ndarray</span>
 
 
@@ -90,14 +78,14 @@
 <span class="c1"># mosaic_arr is 607 x 607, with nwide = 6, ntall = 6</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.272 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-mosaic-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/c83c63a97afe485326cd1fdab357fff8/plot_mosaic.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_mosaic.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.202 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-mosaic-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/712cc7a3913a50341baae9f6b000d797/plot_mosaic.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_mosaic.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/c83c63a97afe485326cd1fdab357fff8/plot_mosaic.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_mosaic.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -138,22 +126,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_get_roi_vertices.html">Get Vertices for an ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_voxel_distance_from_surface.html">Voxel distance from surface</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Mosaic plot</a></li>
-<li class="toctree-l3"><a class="reference internal" href="subject_to_mni.html">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_mask.html">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mni_to_subject.html">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multi_panels_plots.html">Multi-panels figures</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_index_volume.html">Get ROI Index Volume</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -166,13 +155,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Utility Examples</a><ul>
       <li>Previous: <a href="plot_voxel_distance_from_surface.html" title="previous chapter">Voxel distance from surface</a></li>
       <li>Next: <a href="subject_to_mni.html" title="next chapter">Transform from Subject to MNI Space</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -180,8 +171,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -195,11 +186,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/utils/plot_mosaic.rst.txt"
diff --git a/auto_examples/utils/plot_roi_voxel_index_volume.html b/auto_examples/utils/plot_roi_voxel_index_volume.html
index be3c316af..18af36ff1 100644
--- a/auto_examples/utils/plot_roi_voxel_index_volume.html
+++ b/auto_examples/utils/plot_roi_voxel_index_volume.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Get ROI Index Volume &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Get ROI Index Volume &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
-    <link rel="next" title="Create a 3D WebGL Viewer" href="../webgl/single_dataset.html" />
+    <link rel="next" title="WebGL Examples" href="../webgl/index.html" />
     <link rel="prev" title="Multi-panels figures" href="multi_panels_plots.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,69 +38,68 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-roi-voxel-index-volume-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-roi-voxel-index-volume-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="get-roi-index-volume">
-<span id="sphx-glr-auto-examples-utils-plot-roi-voxel-index-volume-py"></span><h1>Get ROI Index Volume<a class="headerlink" href="#get-roi-index-volume" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-utils-plot-roi-voxel-index-volume-py"></span><h1>Get ROI Index Volume<a class="headerlink" href="#get-roi-index-volume" title="Link to this heading">¶</a></h1>
 <p>Create an index volume (similar to the aseg masks in freesurfer) with a different
 integer index for each ROI. ROIs in the left hemisphere will have negative values,
 ROIs in the right hemisphere will have positive values.</p>
-<img src="../../_images/sphx_glr_plot_roi_voxel_index_volume_001.png" srcset="../../_images/sphx_glr_plot_roi_voxel_index_volume_001.png" alt="plot roi voxel index volume" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (V3A) contains no splines
+<img src="../../_images/sphx_glr_plot_roi_voxel_index_volume_001.png" srcset="../../_images/sphx_glr_plot_roi_voxel_index_volume_001.png" alt="plot roi voxel index volume" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (V3A) contains no splines
   warnings.warn(&quot;Requested layer in svg file (%s) contains no splines&quot;%self.name)
-/home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in V3A!
+/home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in V3A!
   warnings.warn(&quot;No vertices found in {}!&quot;.format(name))
-/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (V3B) contains no splines
+/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (V3B) contains no splines
   warnings.warn(&quot;Requested layer in svg file (%s) contains no splines&quot;%self.name)
-/home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in V3B!
+/home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in V3B!
   warnings.warn(&quot;No vertices found in {}!&quot;.format(name))
-/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (LO) contains no splines
+/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (LO) contains no splines
   warnings.warn(&quot;Requested layer in svg file (%s) contains no splines&quot;%self.name)
-/home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in LO!
+/home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in LO!
   warnings.warn(&quot;No vertices found in {}!&quot;.format(name))
-/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (V4) contains no splines
+/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (V4) contains no splines
   warnings.warn(&quot;Requested layer in svg file (%s) contains no splines&quot;%self.name)
-/home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in V4!
+/home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in V4!
   warnings.warn(&quot;No vertices found in {}!&quot;.format(name))
-/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (V7) contains no splines
+/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (V7) contains no splines
   warnings.warn(&quot;Requested layer in svg file (%s) contains no splines&quot;%self.name)
-/home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in V7!
+/home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in V7!
   warnings.warn(&quot;No vertices found in {}!&quot;.format(name))
-/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:491: UserWarning: Requested layer in svg file (IFSFP) contains no splines
+/home/runner/work/pycortex/pycortex/cortex/svgoverlay.py:499: UserWarning: Requested layer in svg file (IFSFP) contains no splines
   warnings.warn(&quot;Requested layer in svg file (%s) contains no splines&quot;%self.name)
-/home/runner/work/pycortex/pycortex/cortex/utils.py:335: UserWarning: No vertices found in IFSFP!
+/home/runner/work/pycortex/pycortex/cortex/utils.py:371: UserWarning: No vertices found in IFSFP!
   warnings.warn(&quot;No vertices found in {}!&quot;.format(name))
 Found 100.00% of S1H
 Found 100.00% of S1M
 Found 100.00% of sPMv
 Found 100.00% of PMvh
-Found 100.00% of M1F
+Found 97.46% of M1F
 Found 100.00% of M1H
 Found 100.00% of Broca
 Found 100.00% of SMFA
 Found 100.00% of M1M
-/home/runner/work/pycortex/pycortex/cortex/utils.py:621: RuntimeWarning: Mean of empty slice.
+/home/runner/work/pycortex/pycortex/cortex/utils.py:665: RuntimeWarning: Mean of empty slice.
   pct_coverage[roi] = vert_in_scan.mean() * 100
-/opt/hostedtoolcache/Python/3.9.12/x64/lib/python3.9/site-packages/numpy/core/_methods.py:189: RuntimeWarning: invalid value encountered in double_scalars
+/opt/hostedtoolcache/Python/3.9.19/x64/lib/python3.9/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in scalar divide
   ret = ret.dtype.type(ret / rcount)
 Found nan% of V3A
 Found nan% of V3B
 Found 100.00% of FO
 Found 100.00% of PPA
 Found 100.00% of S2F
-Found 100.00% of SEF
+Found 91.46% of SEF
 Found nan% of LO
-Found 100.00% of V1
+Found 98.03% of V1
 Found 100.00% of V2
 Found 100.00% of V3
 Found nan% of V4
 Found nan% of V7
 Found 100.00% of FEF
-Found 100.00% of AC
+Found 99.92% of AC
 Found 100.00% of OFA
 Found nan% of IFSFP
-Found 100.00% of S1F
+Found 97.23% of S1F
 Found 100.00% of OPA
 Found 100.00% of EBA
 Found 100.00% of RSC
@@ -109,10 +107,18 @@
 Found 100.00% of SMHA
 Found 100.00% of FFA
 Cutting 0 overlapping voxels (should be &lt; ~50)
-Failed to get connection
-** (inkscape:5552): CRITICAL **: 01:34:04.502: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5552): CRITICAL **: 01:34:04.502: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5552): CRITICAL **: 01:34:04.502: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+/home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI S1F is only 97.23% contained in your scan protocol!
+  warnings.warn(&#39;ROI %s is only %0.2f%% contained in your scan protocol!&#39;%(roi, pct_coverage[roi]))
+/home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI M1F is only 97.46% contained in your scan protocol!
+  warnings.warn(&#39;ROI %s is only %0.2f%% contained in your scan protocol!&#39;%(roi, pct_coverage[roi]))
+/home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI V1 is only 98.03% contained in your scan protocol!
+  warnings.warn(&#39;ROI %s is only %0.2f%% contained in your scan protocol!&#39;%(roi, pct_coverage[roi]))
+/home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI SEF is only 91.46% contained in your scan protocol!
+  warnings.warn(&#39;ROI %s is only %0.2f%% contained in your scan protocol!&#39;%(roi, pct_coverage[roi]))
+/home/runner/work/pycortex/pycortex/cortex/utils.py:718: UserWarning: ROI AC is only 99.92% contained in your scan protocol!
+  warnings.warn(&#39;ROI %s is only %0.2f%% contained in your scan protocol!&#39;%(roi, pct_coverage[roi]))
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 Index keys for which ROI is which in `index_volume`:
 {&#39;S1H&#39;: 1, &#39;S1M&#39;: 2, &#39;sPMv&#39;: 3, &#39;PMvh&#39;: 4, &#39;M1F&#39;: 5, &#39;M1H&#39;: 6, &#39;Broca&#39;: 7, &#39;SMFA&#39;: 8, &#39;M1M&#39;: 9, &#39;V3A&#39;: 10, &#39;V3B&#39;: 11, &#39;FO&#39;: 12, &#39;PPA&#39;: 13, &#39;S2F&#39;: 14, &#39;SEF&#39;: 15, &#39;LO&#39;: 16, &#39;V1&#39;: 17, &#39;V2&#39;: 18, &#39;V3&#39;: 19, &#39;V4&#39;: 20, &#39;V7&#39;: 21, &#39;FEF&#39;: 22, &#39;AC&#39;: 23, &#39;OFA&#39;: 24, &#39;IFSFP&#39;: 25, &#39;S1F&#39;: 26, &#39;OPA&#39;: 27, &#39;EBA&#39;: 28, &#39;RSC&#39;: 29, &#39;IPS&#39;: 30, &#39;SMHA&#39;: 31, &#39;FFA&#39;: 32}
 </pre></div>
@@ -120,7 +126,7 @@
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
@@ -155,14 +161,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  9.884 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-roi-voxel-index-volume-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/748207cb5b8d3ed64f9cdfb6ab985e68/plot_roi_voxel_index_volume.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_roi_voxel_index_volume.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 22.996 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-roi-voxel-index-volume-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/09288dd002fd14fba94fc085d758d914/plot_roi_voxel_index_volume.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_roi_voxel_index_volume.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/748207cb5b8d3ed64f9cdfb6ab985e68/plot_roi_voxel_index_volume.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_roi_voxel_index_volume.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -203,22 +209,23 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_get_roi_vertices.html">Get Vertices for an ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_voxel_distance_from_surface.html">Voxel distance from surface</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_mosaic.html">Mosaic plot</a></li>
-<li class="toctree-l3"><a class="reference internal" href="subject_to_mni.html">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_mask.html">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mni_to_subject.html">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multi_panels_plots.html">Multi-panels figures</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Get ROI Index Volume</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -231,13 +238,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Utility Examples</a><ul>
       <li>Previous: <a href="multi_panels_plots.html" title="previous chapter">Multi-panels figures</a></li>
-      <li>Next: <a href="../webgl/single_dataset.html" title="next chapter">Create a 3D WebGL Viewer</a></li>
+      <li>Next: <a href="../webgl/index.html" title="next chapter">WebGL Examples</a></li>
+  </ul></li>
   </ul></li>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -245,8 +254,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -260,11 +269,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/utils/plot_roi_voxel_index_volume.rst.txt"
diff --git a/auto_examples/utils/plot_roi_voxel_mask.html b/auto_examples/utils/plot_roi_voxel_mask.html
index 9459d80de..9d26ff569 100644
--- a/auto_examples/utils/plot_roi_voxel_mask.html
+++ b/auto_examples/utils/plot_roi_voxel_mask.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Get ROI Voxel Mask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
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-    <script src="../../_static/jquery.js"></script>
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-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Get ROI Voxel Mask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Transform from MNI to Subject Space" href="mni_to_subject.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,31 +38,28 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-roi-voxel-mask-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-roi-voxel-mask-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="get-roi-voxel-mask">
-<span id="sphx-glr-auto-examples-utils-plot-roi-voxel-mask-py"></span><h1>Get ROI Voxel Mask<a class="headerlink" href="#get-roi-voxel-mask" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-utils-plot-roi-voxel-mask-py"></span><h1>Get ROI Voxel Mask<a class="headerlink" href="#get-roi-voxel-mask" title="Link to this heading">¶</a></h1>
 <p>Get proportion of each voxel that exists within a named ROI (this
 constitutes a probability map for the ROI, with values ranging from
-0-1). Plot this probablistic roi mask onto a flatmap.</p>
+0-1). Plot this probabilistic roi mask onto a flatmap.</p>
 <p>In order for this to work, the specified ROI must exist in the
 overlays.svg file in the pycortex filestore for this subject.</p>
-<img src="../../_images/sphx_glr_plot_roi_voxel_mask_001.png" srcset="../../_images/sphx_glr_plot_roi_voxel_mask_001.png" alt="plot roi voxel mask" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Caching mapper...
+<img src="../../_images/sphx_glr_plot_roi_voxel_mask_001.png" srcset="../../_images/sphx_glr_plot_roi_voxel_mask_001.png" alt="plot roi voxel mask" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Caching mapper...
 Found 100.00% of EBA
 Cutting 0 overlapping voxels (should be &lt; ~50)
 Generating a flatmap cache
-Failed to get connection
-** (inkscape:5543): CRITICAL **: 01:33:54.463: dbus_g_proxy_new_for_name: assertion &#39;connection != NULL&#39; failed
-** (inkscape:5543): CRITICAL **: 01:33:54.463: dbus_g_proxy_call: assertion &#39;DBUS_IS_G_PROXY (proxy)&#39; failed
-** (inkscape:5543): CRITICAL **: 01:33:54.464: dbus_g_connection_register_g_object: assertion &#39;connection != NULL&#39; failed
+Background RRGGBBAA: ffffff00
+Area 0:0:1960.5:1024 exported to 1960 x 1024 pixels (96 dpi)
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
 <span class="n">subject</span> <span class="o">=</span> <span class="s2">&quot;S1&quot;</span>
@@ -75,7 +71,7 @@
                                        <span class="n">roi_list</span><span class="o">=</span><span class="p">[</span><span class="n">roi</span><span class="p">],</span>
                                        <span class="n">gm_sampler</span><span class="o">=</span><span class="s1">&#39;cortical-conservative&#39;</span><span class="p">,</span> <span class="c1"># Select only voxels mostly within cortex</span>
                                        <span class="n">split_lr</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="c1"># No separate left/right ROIs</span>
-                                       <span class="n">threshold</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="c1"># Leave roi mask values as probabilites / fractions</span>
+                                       <span class="n">threshold</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="c1"># Leave roi mask values as probabilities / fractions</span>
                                        <span class="n">return_dict</span><span class="o">=</span><span class="kc">True</span>
                                        <span class="p">)</span>
 
@@ -96,14 +92,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  7.399 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-roi-voxel-mask-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/56b9122102ee96a8240f7eef88bfd884/plot_roi_voxel_mask.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_roi_voxel_mask.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 8.659 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-roi-voxel-mask-py">
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 <p><a class="reference download internal" download="" href="../../_downloads/3a293f5fef99cd1b3cbd8e7036b48449/plot_roi_voxel_mask.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_roi_voxel_mask.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/56b9122102ee96a8240f7eef88bfd884/plot_roi_voxel_mask.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_roi_voxel_mask.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -144,22 +140,23 @@ <h3>Navigation</h3>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_get_roi_vertices.html">Get Vertices for an ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_voxel_distance_from_surface.html">Voxel distance from surface</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_mosaic.html">Mosaic plot</a></li>
-<li class="toctree-l3"><a class="reference internal" href="subject_to_mni.html">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mni_to_subject.html">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multi_panels_plots.html">Multi-panels figures</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_index_volume.html">Get ROI Index Volume</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
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 </li>
-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
 </ul>
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@@ -172,13 +169,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Utility Examples</a><ul>
       <li>Previous: <a href="subject_to_mni.html" title="previous chapter">Transform from Subject to MNI Space</a></li>
       <li>Next: <a href="mni_to_subject.html" title="next chapter">Transform from MNI to Subject Space</a></li>
   </ul></li>
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+  </ul></li>
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-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -186,8 +185,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -201,11 +200,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/utils/plot_roi_voxel_mask.rst.txt"
diff --git a/auto_examples/utils/plot_voxel_distance_from_surface.html b/auto_examples/utils/plot_voxel_distance_from_surface.html
index bdc788cf0..676d4e3b3 100644
--- a/auto_examples/utils/plot_voxel_distance_from_surface.html
+++ b/auto_examples/utils/plot_voxel_distance_from_surface.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Voxel distance from surface &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Voxel distance from surface &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
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@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,20 +38,19 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-voxel-distance-from-surface-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-utils-plot-voxel-distance-from-surface-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="voxel-distance-from-surface">
-<span id="sphx-glr-auto-examples-utils-plot-voxel-distance-from-surface-py"></span><h1>Voxel distance from surface<a class="headerlink" href="#voxel-distance-from-surface" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-utils-plot-voxel-distance-from-surface-py"></span><h1>Voxel distance from surface<a class="headerlink" href="#voxel-distance-from-surface" title="Link to this heading">¶</a></h1>
 <p>The utility function <cite>get_vox_dist</cite> returns the distance from each voxel in some space to the nearest vertex on the given surface. This function is used for generating ROI masks, cortical masks, etc.</p>
-<img src="../../_images/sphx_glr_plot_voxel_distance_from_surface_001.png" srcset="../../_images/sphx_glr_plot_voxel_distance_from_surface_001.png" alt="plot voxel distance from surface" class = "sphx-glr-single-img"/><p class="sphx-glr-script-out">Out:</p>
-<div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;matplotlib.colorbar.Colorbar object at 0x7fa8b2139a60&gt;
+<img src="../../_images/sphx_glr_plot_voxel_distance_from_surface_001.png" srcset="../../_images/sphx_glr_plot_voxel_distance_from_surface_001.png" alt="plot voxel distance from surface" class = "sphx-glr-single-img"/><div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>&lt;matplotlib.colorbar.Colorbar object at 0x7f4873079b50&gt;
 </pre></div>
 </div>
 <div class="line-block">
 <div class="line"><br /></div>
 </div>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
 <span class="c1"># get distance to nearest point on the mid-cortical (fiducial) surface from each</span>
@@ -72,14 +70,14 @@
 <span class="n">plt</span><span class="o">.</span><span class="n">colorbar</span><span class="p">(</span><span class="n">label</span><span class="o">=</span><span class="s1">&#39;mm from surface&#39;</span><span class="p">)</span>
 </pre></div>
 </div>
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-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-voxel-distance-from-surface-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/1ea1f603b7ca5c9c1406e688c92183ac/plot_voxel_distance_from_surface.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_voxel_distance_from_surface.py</span></code></a></p>
-</div>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 3.643 seconds)</p>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-plot-voxel-distance-from-surface-py">
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 <p><a class="reference download internal" download="" href="../../_downloads/34bc427b5d07c6d8727ed358794c8cc9/plot_voxel_distance_from_surface.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_voxel_distance_from_surface.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/1ea1f603b7ca5c9c1406e688c92183ac/plot_voxel_distance_from_surface.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">plot_voxel_distance_from_surface.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -120,22 +118,23 @@ <h3>Navigation</h3>
 <ul class="current">
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_get_roi_vertices.html">Get Vertices for an ROI</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Voxel distance from surface</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_mosaic.html">Mosaic plot</a></li>
-<li class="toctree-l3"><a class="reference internal" href="subject_to_mni.html">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_mask.html">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mni_to_subject.html">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multi_panels_plots.html">Multi-panels figures</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_index_volume.html">Get ROI Index Volume</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Utility Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
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@@ -148,13 +147,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Utility Examples</a><ul>
       <li>Previous: <a href="plot_get_roi_vertices.html" title="previous chapter">Get Vertices for an ROI</a></li>
       <li>Next: <a href="plot_mosaic.html" title="next chapter">Mosaic plot</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -162,8 +163,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -177,11 +178,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/utils/plot_voxel_distance_from_surface.rst.txt"
diff --git a/auto_examples/utils/sg_execution_times.html b/auto_examples/utils/sg_execution_times.html
index c49b5343b..d9528473c 100644
--- a/auto_examples/utils/sg_execution_times.html
+++ b/auto_examples/utils/sg_execution_times.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Computation times &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Computation times &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,49 +35,63 @@
           <div class="body" role="main">
             
   <section id="computation-times">
-<span id="sphx-glr-auto-examples-utils-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Permalink to this headline">¶</a></h1>
-<p><strong>00:24.158</strong> total execution time for <strong>auto_examples_utils</strong> files:</p>
-<table class="docutils align-default">
-<colgroup>
-<col style="width: 86%" />
-<col style="width: 8%" />
-<col style="width: 6%" />
-</colgroup>
-<tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_roi_voxel_index_volume.html#sphx-glr-auto-examples-utils-plot-roi-voxel-index-volume-py"><span class="std std-ref">Get ROI Index Volume</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_roi_voxel_index_volume.py</span></code>)</p></td>
-<td><p>00:09.884</p></td>
-<td><p>0.0 MB</p></td>
+<span id="sphx-glr-auto-examples-utils-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>00:39.512</strong> total execution time for 8 files <strong>from auto_examples/utils</strong>:</p>
+<div class="docutils container">
+<style scoped>
+<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+<link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+</style>
+<script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+<script type="text/javascript" class="init">
+$(document).ready( function () {
+    $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+} );
+</script><table class="table table-striped sg-datatable docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="plot_roi_voxel_mask.html#sphx-glr-auto-examples-utils-plot-roi-voxel-mask-py"><span class="std std-ref">Get ROI Voxel Mask</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_roi_voxel_mask.py</span></code>)</p></td>
-<td><p>00:07.399</p></td>
-<td><p>0.0 MB</p></td>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_roi_voxel_index_volume.html#sphx-glr-auto-examples-utils-plot-roi-voxel-index-volume-py"><span class="std std-ref">Get ROI Index Volume</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_roi_voxel_index_volume.py</span></code>)</p></td>
+<td><p>00:22.996</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_voxel_distance_from_surface.html#sphx-glr-auto-examples-utils-plot-voxel-distance-from-surface-py"><span class="std std-ref">Voxel distance from surface</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_voxel_distance_from_surface.py</span></code>)</p></td>
-<td><p>00:04.326</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_roi_voxel_mask.html#sphx-glr-auto-examples-utils-plot-roi-voxel-mask-py"><span class="std std-ref">Get ROI Voxel Mask</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_roi_voxel_mask.py</span></code>)</p></td>
+<td><p>00:08.659</p></td>
+<td><p>0.0</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="plot_get_roi_vertices.html#sphx-glr-auto-examples-utils-plot-get-roi-vertices-py"><span class="std std-ref">Get Vertices for an ROI</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_get_roi_vertices.py</span></code>)</p></td>
-<td><p>00:02.277</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>00:04.012</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="plot_voxel_distance_from_surface.html#sphx-glr-auto-examples-utils-plot-voxel-distance-from-surface-py"><span class="std std-ref">Voxel distance from surface</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_voxel_distance_from_surface.py</span></code>)</p></td>
+<td><p>00:03.643</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="plot_mosaic.html#sphx-glr-auto-examples-utils-plot-mosaic-py"><span class="std std-ref">Mosaic plot</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_mosaic.py</span></code>)</p></td>
-<td><p>00:00.272</p></td>
-<td><p>0.0 MB</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="plot_mosaic.html#sphx-glr-auto-examples-utils-plot-mosaic-py"><span class="std std-ref">Mosaic plot</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_mosaic.py</span></code>)</p></td>
+<td><p>00:00.202</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="mni_to_subject.html#sphx-glr-auto-examples-utils-mni-to-subject-py"><span class="std std-ref">Transform from MNI to Subject Space</span></a> (<code class="docutils literal notranslate"><span class="pre">mni_to_subject.py</span></code>)</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="mni_to_subject.html#sphx-glr-auto-examples-utils-mni-to-subject-py"><span class="std std-ref">Transform from MNI to Subject Space</span></a> (<code class="docutils literal notranslate"><span class="pre">mni_to_subject.py</span></code>)</p></td>
 <td><p>00:00.000</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="multi_panels_plots.html#sphx-glr-auto-examples-utils-multi-panels-plots-py"><span class="std std-ref">Multi-panels figures</span></a> (<code class="docutils literal notranslate"><span class="pre">multi_panels_plots.py</span></code>)</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="multi_panels_plots.html#sphx-glr-auto-examples-utils-multi-panels-plots-py"><span class="std std-ref">Multi-panels figures</span></a> (<code class="docutils literal notranslate"><span class="pre">multi_panels_plots.py</span></code>)</p></td>
 <td><p>00:00.000</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>0.0</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="subject_to_mni.html#sphx-glr-auto-examples-utils-subject-to-mni-py"><span class="std std-ref">Transform from Subject to MNI Space</span></a> (<code class="docutils literal notranslate"><span class="pre">subject_to_mni.py</span></code>)</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="subject_to_mni.html#sphx-glr-auto-examples-utils-subject-to-mni-py"><span class="std std-ref">Transform from Subject to MNI Space</span></a> (<code class="docutils literal notranslate"><span class="pre">subject_to_mni.py</span></code>)</p></td>
 <td><p>00:00.000</p></td>
-<td><p>0.0 MB</p></td>
+<td><p>0.0</p></td>
 </tr>
 </tbody>
 </table>
+</div>
 </section>
 
 
@@ -128,7 +141,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -136,8 +149,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -151,11 +164,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/utils/sg_execution_times.rst.txt"
diff --git a/auto_examples/utils/subject_to_mni.html b/auto_examples/utils/subject_to_mni.html
index cfb4dfa78..c2531455f 100644
--- a/auto_examples/utils/subject_to_mni.html
+++ b/auto_examples/utils/subject_to_mni.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Transform from Subject to MNI Space &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Transform from Subject to MNI Space &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Get ROI Voxel Mask" href="plot_roi_voxel_mask.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,16 +38,16 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-utils-subject-to-mni-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-utils-subject-to-mni-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="transform-from-subject-to-mni-space">
-<span id="sphx-glr-auto-examples-utils-subject-to-mni-py"></span><h1>Transform from Subject to MNI Space<a class="headerlink" href="#transform-from-subject-to-mni-space" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-utils-subject-to-mni-py"></span><h1>Transform from Subject to MNI Space<a class="headerlink" href="#transform-from-subject-to-mni-space" title="Link to this heading">¶</a></h1>
 <p>Pycortex has built-in functionality for linearly transforming data to and from
 standard atlas spaces (e.g. MNI-152). This functionality is built on top of FSL.</p>
 <p>This example shows how to create a transform from some subject functional space
 to MNI space, and how to apply that transform to a dataset.</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 
 <span class="c1"># First let&#39;s do this &quot;manually&quot;, using cortex.mni</span>
 <span class="kn">from</span> <span class="nn">cortex</span> <span class="kn">import</span> <span class="n">mni</span>
@@ -69,7 +68,7 @@
 <span class="n">mni_data</span> <span class="o">=</span> <span class="n">mni</span><span class="o">.</span><span class="n">transform_to_mni</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">s1_to_mni</span><span class="p">)</span>
 <span class="c1"># mni_data is a nibabel Nifti1Image</span>
 
-<span class="n">mni_data_vol</span> <span class="o">=</span> <span class="n">mni_data</span><span class="o">.</span><span class="n">get_data</span><span class="p">()</span> <span class="c1"># the actual array, shape=(182,218,182)</span>
+<span class="n">mni_data_vol</span> <span class="o">=</span> <span class="n">mni_data</span><span class="o">.</span><span class="n">get_fdata</span><span class="p">()</span> <span class="c1"># the actual array, shape=(182,218,182)</span>
 
 <span class="c1"># That was the manual method. pycortex can also cache these transforms for you</span>
 <span class="c1"># if you get them using the pycortex database</span>
@@ -77,14 +76,13 @@
 <span class="c1"># this is the same as s1_to_mni, but will return instantly on subsequent calls</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-subject-to-mni-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/2adc80653ddc362ff5e8f800f300132f/subject_to_mni.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">subject_to_mni.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-utils-subject-to-mni-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/5eeaabd38fb75e278bcc70a86663c196/subject_to_mni.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">subject_to_mni.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/2adc80653ddc362ff5e8f800f300132f/subject_to_mni.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">subject_to_mni.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -125,22 +123,23 @@ <h3>Navigation</h3>
 <ul class="current">
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
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 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
-<li class="toctree-l2 current"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="plot_get_roi_vertices.html">Get Vertices for an ROI</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_voxel_distance_from_surface.html">Voxel distance from surface</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_mosaic.html">Mosaic plot</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Transform from Subject to MNI Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_mask.html">Get ROI Voxel Mask</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mni_to_subject.html">Transform from MNI to Subject Space</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multi_panels_plots.html">Multi-panels figures</a></li>
-<li class="toctree-l3"><a class="reference internal" href="plot_roi_voxel_index_volume.html">Get ROI Index Volume</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">Utility Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../webgl/index.html">WebGL Examples</a></li>
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-<li class="toctree-l2"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a></li>
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@@ -153,13 +152,15 @@ <h3>Related Topics</h3>
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   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">Utility Examples</a><ul>
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       <li>Next: <a href="plot_roi_voxel_mask.html" title="next chapter">Get ROI Voxel Mask</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
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-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -167,8 +168,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -182,11 +183,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/utils/subject_to_mni.rst.txt"
diff --git a/auto_examples/webgl/dynamic_with_custom_template.html b/auto_examples/webgl/dynamic_with_custom_template.html
index 32494fa8f..232b7f10c 100644
--- a/auto_examples/webgl/dynamic_with_custom_template.html
+++ b/auto_examples/webgl/dynamic_with_custom_template.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Dynamic viewer with html template &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Dynamic viewer with html template &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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     <link rel="next" title="Static viewer with html template" href="static_with_custom_template.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-dynamic-with-custom-template-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-dynamic-with-custom-template-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="dynamic-viewer-with-html-template">
-<span id="sphx-glr-auto-examples-webgl-dynamic-with-custom-template-py"></span><h1>Dynamic viewer with html template<a class="headerlink" href="#dynamic-viewer-with-html-template" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-webgl-dynamic-with-custom-template-py"></span><h1>Dynamic viewer with html template<a class="headerlink" href="#dynamic-viewer-with-html-template" title="Link to this heading">¶</a></h1>
 <p>A webgl viewer displays a 3D view of brain data in a web browser</p>
 <p>Pycortex has the functionality of provide a custom html template to specify
 the attributes of the viewer. The file ‘my_template.html’ included in this
@@ -95,7 +94,7 @@
 <p>}</p>
 <p>&lt;/style&gt;</p>
 </div></blockquote>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -111,14 +110,13 @@
 <span class="c1"># the viewer will display the modifications specified in the template</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-dynamic-with-custom-template-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/14e34a764fbaa5a07ec53d829a437b41/dynamic_with_custom_template.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">dynamic_with_custom_template.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-dynamic-with-custom-template-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/cc502342f659cf0c536754003ffae538/dynamic_with_custom_template.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">dynamic_with_custom_template.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/14e34a764fbaa5a07ec53d829a437b41/dynamic_with_custom_template.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">dynamic_with_custom_template.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -159,17 +157,21 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
 <li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="single_dataset.html">Create a 3D WebGL Viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="static.html">Create a static viewer</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Dynamic viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="static_with_custom_template.html">Static viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multiple_datasets.html">Create a 3D WebGL Viewer with Multiple Datasets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -184,13 +186,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">WebGL Examples</a><ul>
       <li>Previous: <a href="static.html" title="previous chapter">Create a static viewer</a></li>
       <li>Next: <a href="static_with_custom_template.html" title="next chapter">Static viewer with html template</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -198,8 +202,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -213,11 +217,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/webgl/dynamic_with_custom_template.rst.txt"
diff --git a/auto_examples/webgl/index.html b/auto_examples/webgl/index.html
new file mode 100644
index 000000000..bd58106c2
--- /dev/null
+++ b/auto_examples/webgl/index.html
@@ -0,0 +1,170 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>WebGL Examples &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+    <link rel="next" title="Create a 3D WebGL Viewer" href="single_dataset.html" />
+    <link rel="prev" title="Get ROI Index Volume" href="../utils/plot_roi_voxel_index_volume.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="webgl-examples">
+<span id="sphx-glr-auto-examples-webgl"></span><h1>WebGL Examples<a class="headerlink" href="#webgl-examples" title="Link to this heading">¶</a></h1>
+<p>Examples demonstrating how to make beautiful interactive 3-D viewers</p>
+<div class="sphx-glr-thumbnails"><div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser"><img alt="" src="../../_images/sphx_glr_single_dataset_thumb.png" />
+<p><a class="reference internal" href="single_dataset.html#sphx-glr-auto-examples-webgl-single-dataset-py"><span class="std std-ref">Create a 3D WebGL Viewer</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Create a 3D WebGL Viewer</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="A static viewer is a brain viewer that exists permanently on a filesystem"><img alt="" src="../../_images/sphx_glr_static_thumb.png" />
+<p><a class="reference internal" href="static.html#sphx-glr-auto-examples-webgl-static-py"><span class="std std-ref">Create a static viewer</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Create a static viewer</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ..."><img alt="" src="../../_images/sphx_glr_dynamic_with_custom_template_thumb.png" />
+<p><a class="reference internal" href="dynamic_with_custom_template.html#sphx-glr-auto-examples-webgl-dynamic-with-custom-template-py"><span class="std std-ref">Dynamic viewer with html template</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Dynamic viewer with html template</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="Pycortex has the functionality of provide a custom html template to specify  the attributes of ..."><img alt="" src="../../_images/sphx_glr_static_with_custom_template_thumb.png" />
+<p><a class="reference internal" href="static_with_custom_template.html#sphx-glr-auto-examples-webgl-static-with-custom-template-py"><span class="std std-ref">Static viewer with html template</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Static viewer with html template</div>
+</div><div class="sphx-glr-thumbcontainer" tooltip="A webgl viewer displays a 3D view of brain data in a web browser"><img alt="" src="../../_images/sphx_glr_multiple_datasets_thumb.png" />
+<p><a class="reference internal" href="multiple_datasets.html#sphx-glr-auto-examples-webgl-multiple-datasets-py"><span class="std std-ref">Create a 3D WebGL Viewer with Multiple Datasets</span></a></p>
+  <div class="sphx-glr-thumbnail-title">Create a 3D WebGL Viewer with Multiple Datasets</div>
+</div></div><div class="toctree-wrapper compound">
+</div>
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
+
+
+
+
+
+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3 current"><a class="current reference internal" href="#">WebGL Examples</a></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
+</ul>
+
+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  <li><a href="../index.html">Example Gallery</a><ul>
+      <li>Previous: <a href="../utils/plot_roi_voxel_index_volume.html" title="previous chapter">Get ROI Index Volume</a></li>
+      <li>Next: <a href="single_dataset.html" title="next chapter">Create a 3D WebGL Viewer</a></li>
+  </ul></li>
+  </ul></li>
+</ul>
+</div>
+<search id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
+
+
+
+
+
+
+
+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/auto_examples/webgl/index.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
+
+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/auto_examples/webgl/multiple_datasets.html b/auto_examples/webgl/multiple_datasets.html
index 00fac203e..f52c9e514 100644
--- a/auto_examples/webgl/multiple_datasets.html
+++ b/auto_examples/webgl/multiple_datasets.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Create a 3D WebGL Viewer with Multiple Datasets &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Create a 3D WebGL Viewer with Multiple Datasets &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Python API Reference" href="../../api_reference_flat.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,17 +38,17 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-multiple-datasets-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-multiple-datasets-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="create-a-3d-webgl-viewer-with-multiple-datasets">
-<span id="sphx-glr-auto-examples-webgl-multiple-datasets-py"></span><h1>Create a 3D WebGL Viewer with Multiple Datasets<a class="headerlink" href="#create-a-3d-webgl-viewer-with-multiple-datasets" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-webgl-multiple-datasets-py"></span><h1>Create a 3D WebGL Viewer with Multiple Datasets<a class="headerlink" href="#create-a-3d-webgl-viewer-with-multiple-datasets" title="Link to this heading">¶</a></h1>
 <p>A webgl viewer displays a 3D view of brain data in a web browser</p>
 <p>Multiple datasets can be loaded into the same viewer</p>
 <p>The <cite>priority</cite> kwarg passed to Volume objects determines the display ordering</p>
 <p>Lower values of <cite>priority</cite> are displayed first</p>
 <p>In the browser you can switch between datasets with the + and - keys</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -71,14 +70,13 @@
 <span class="c1"># the viewer can then be accessed in a web browser, in this case at &quot;localhost:39140&quot;</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-multiple-datasets-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/51a994186be44efb126f15bc71a9e412/multiple_datasets.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">multiple_datasets.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-multiple-datasets-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/0f8be1e4c7dbdc2b5c70b92872c6b4bf/multiple_datasets.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">multiple_datasets.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/51a994186be44efb126f15bc71a9e412/multiple_datasets.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">multiple_datasets.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -119,17 +117,21 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
 <li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="single_dataset.html">Create a 3D WebGL Viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="static.html">Create a static viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="dynamic_with_custom_template.html">Dynamic viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="static_with_custom_template.html">Static viewer with html template</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Create a 3D WebGL Viewer with Multiple Datasets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -144,13 +146,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">WebGL Examples</a><ul>
       <li>Previous: <a href="static_with_custom_template.html" title="previous chapter">Static viewer with html template</a></li>
       <li>Next: <a href="../../api_reference_flat.html" title="next chapter">Python API Reference</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -158,8 +162,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -173,11 +177,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/webgl/multiple_datasets.rst.txt"
diff --git a/auto_examples/webgl/sg_execution_times.html b/auto_examples/webgl/sg_execution_times.html
new file mode 100644
index 000000000..1c18a521c
--- /dev/null
+++ b/auto_examples/webgl/sg_execution_times.html
@@ -0,0 +1,170 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Computation times &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="computation-times">
+<span id="sphx-glr-auto-examples-webgl-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>00:00.000</strong> total execution time for 5 files <strong>from auto_examples/webgl</strong>:</p>
+<div class="docutils container">
+<style scoped>
+<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+<link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
+</style>
+<script src="https://code.jquery.com/jquery-3.7.0.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js"></script>
+<script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+<script type="text/javascript" class="init">
+$(document).ready( function () {
+    $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+} );
+</script><table class="table table-striped sg-datatable docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference internal" href="dynamic_with_custom_template.html#sphx-glr-auto-examples-webgl-dynamic-with-custom-template-py"><span class="std std-ref">Dynamic viewer with html template</span></a> (<code class="docutils literal notranslate"><span class="pre">dynamic_with_custom_template.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="multiple_datasets.html#sphx-glr-auto-examples-webgl-multiple-datasets-py"><span class="std std-ref">Create a 3D WebGL Viewer with Multiple Datasets</span></a> (<code class="docutils literal notranslate"><span class="pre">multiple_datasets.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="single_dataset.html#sphx-glr-auto-examples-webgl-single-dataset-py"><span class="std std-ref">Create a 3D WebGL Viewer</span></a> (<code class="docutils literal notranslate"><span class="pre">single_dataset.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="static.html#sphx-glr-auto-examples-webgl-static-py"><span class="std std-ref">Create a static viewer</span></a> (<code class="docutils literal notranslate"><span class="pre">static.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="static_with_custom_template.html#sphx-glr-auto-examples-webgl-static-with-custom-template-py"><span class="std std-ref">Static viewer with html template</span></a> (<code class="docutils literal notranslate"><span class="pre">static_with_custom_template.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+</tbody>
+</table>
+</div>
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
+
+
+
+
+
+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../index.html">Example Gallery</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
+</ul>
+
+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  </ul></li>
+</ul>
+</div>
+<search id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
+
+
+
+
+
+
+
+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/auto_examples/webgl/sg_execution_times.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
+
+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/auto_examples/webgl/single_dataset.html b/auto_examples/webgl/single_dataset.html
index 4f4b3ef25..e38da8c42 100644
--- a/auto_examples/webgl/single_dataset.html
+++ b/auto_examples/webgl/single_dataset.html
@@ -1,31 +1,30 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Create a 3D WebGL Viewer &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Create a 3D WebGL Viewer &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Create a static viewer" href="static.html" />
-    <link rel="prev" title="Get ROI Index Volume" href="../utils/plot_roi_voxel_index_volume.html" />
+    <link rel="prev" title="WebGL Examples" href="index.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,13 +38,13 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-single-dataset-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-single-dataset-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="create-a-3d-webgl-viewer">
-<span id="sphx-glr-auto-examples-webgl-single-dataset-py"></span><h1>Create a 3D WebGL Viewer<a class="headerlink" href="#create-a-3d-webgl-viewer" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-webgl-single-dataset-py"></span><h1>Create a 3D WebGL Viewer<a class="headerlink" href="#create-a-3d-webgl-viewer" title="Link to this heading">¶</a></h1>
 <p>A webgl viewer displays a 3D view of brain data in a web browser</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -60,14 +59,13 @@
 <span class="c1"># the viewer can then be accessed in a web browser, in this case at &quot;localhost:39140&quot;</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-single-dataset-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/eda6ffb48f66b36626a0efc5cc56dcc7/single_dataset.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">single_dataset.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-single-dataset-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/efc62904d6eba92714248fce62fca073/single_dataset.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">single_dataset.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/eda6ffb48f66b36626a0efc5cc56dcc7/single_dataset.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">single_dataset.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -108,17 +106,21 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
 <li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Create a 3D WebGL Viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="static.html">Create a static viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="dynamic_with_custom_template.html">Dynamic viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="static_with_custom_template.html">Static viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multiple_datasets.html">Create a 3D WebGL Viewer with Multiple Datasets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -133,13 +135,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
-      <li>Previous: <a href="../utils/plot_roi_voxel_index_volume.html" title="previous chapter">Get ROI Index Volume</a></li>
+  <li><a href="index.html">WebGL Examples</a><ul>
+      <li>Previous: <a href="index.html" title="previous chapter">WebGL Examples</a></li>
       <li>Next: <a href="static.html" title="next chapter">Create a static viewer</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -147,8 +151,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -162,11 +166,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/webgl/single_dataset.rst.txt"
diff --git a/auto_examples/webgl/static.html b/auto_examples/webgl/static.html
index a5b2932c6..d075e6415 100644
--- a/auto_examples/webgl/static.html
+++ b/auto_examples/webgl/static.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Create a static viewer &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Create a static viewer &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Dynamic viewer with html template" href="dynamic_with_custom_template.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,15 +38,15 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-static-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-static-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="create-a-static-viewer">
-<span id="sphx-glr-auto-examples-webgl-static-py"></span><h1>Create a static viewer<a class="headerlink" href="#create-a-static-viewer" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-webgl-static-py"></span><h1>Create a static viewer<a class="headerlink" href="#create-a-static-viewer" title="Link to this heading">¶</a></h1>
 <p>A static viewer is a brain viewer that exists permanently on a filesystem</p>
 <p>The viewer is stored in a directory that stores html, javascript, data, etc</p>
 <p>The viewer directory must be hosted by a server such as nginx</p>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -64,14 +63,13 @@
 <span class="c1"># a webserver such as nginx can then be used to host the static viewer</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-static-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/d8e9d3bb7db872ad404950fbd5735277/static.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">static.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-static-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/344a9c20fa2e5b85144a3143c290594a/static.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">static.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/d8e9d3bb7db872ad404950fbd5735277/static.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">static.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -112,17 +110,21 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
 <li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="single_dataset.html">Create a 3D WebGL Viewer</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Create a static viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="dynamic_with_custom_template.html">Dynamic viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="static_with_custom_template.html">Static viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multiple_datasets.html">Create a 3D WebGL Viewer with Multiple Datasets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -137,13 +139,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">WebGL Examples</a><ul>
       <li>Previous: <a href="single_dataset.html" title="previous chapter">Create a 3D WebGL Viewer</a></li>
       <li>Next: <a href="dynamic_with_custom_template.html" title="next chapter">Dynamic viewer with html template</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -151,8 +155,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -166,11 +170,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/auto_examples/webgl/static.rst.txt"
diff --git a/auto_examples/webgl/static_with_custom_template.html b/auto_examples/webgl/static_with_custom_template.html
index 140e7aebb..a0ae65158 100644
--- a/auto_examples/webgl/static_with_custom_template.html
+++ b/auto_examples/webgl/static_with_custom_template.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Static viewer with html template &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Static viewer with html template &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
     <link rel="next" title="Create a 3D WebGL Viewer with Multiple Datasets" href="multiple_datasets.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -39,11 +38,11 @@
             
   <div class="sphx-glr-download-link-note admonition note">
 <p class="admonition-title">Note</p>
-<p>Click <a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-static-with-custom-template-py"><span class="std std-ref">here</span></a>
+<p><a class="reference internal" href="#sphx-glr-download-auto-examples-webgl-static-with-custom-template-py"><span class="std std-ref">Go to the end</span></a>
 to download the full example code</p>
 </div>
 <section class="sphx-glr-example-title" id="static-viewer-with-html-template">
-<span id="sphx-glr-auto-examples-webgl-static-with-custom-template-py"></span><h1>Static viewer with html template<a class="headerlink" href="#static-viewer-with-html-template" title="Permalink to this headline">¶</a></h1>
+<span id="sphx-glr-auto-examples-webgl-static-with-custom-template-py"></span><h1>Static viewer with html template<a class="headerlink" href="#static-viewer-with-html-template" title="Link to this heading">¶</a></h1>
 <p>A static viewer is a brain viewer that exists permanently on a filesystem
 The viewer is stored in a directory that stores html, javascript, data, etc
 The viewer directory must be hosted by a server such as nginx.</p>
@@ -97,7 +96,7 @@
 <p>}</p>
 <p>&lt;/style&gt;</p>
 </div></blockquote>
-<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
+<div class="highlight-Python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="mi">1234</span><span class="p">)</span>
@@ -116,14 +115,13 @@
 <span class="c1"># with the new template</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> ( 0 minutes  0.000 seconds)</p>
-<div class="sphx-glr-footer class sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-static-with-custom-template-py">
-<div class="sphx-glr-download sphx-glr-download-python docutils container">
-<p><a class="reference download internal" download="" href="../../_downloads/84e1811515cb92638193fa300b710c60/static_with_custom_template.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">static_with_custom_template.py</span></code></a></p>
-</div>
+<div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-webgl-static-with-custom-template-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/03727e1a4b42addea2598e45140498aa/static_with_custom_template.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">static_with_custom_template.ipynb</span></code></a></p>
 </div>
+<div class="sphx-glr-download sphx-glr-download-python docutils container">
+<p><a class="reference download internal" download="" href="../../_downloads/84e1811515cb92638193fa300b710c60/static_with_custom_template.py"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Python</span> <span class="pre">source</span> <span class="pre">code:</span> <span class="pre">static_with_custom_template.py</span></code></a></p>
+</div>
 </div>
 <p class="sphx-glr-signature"><a class="reference external" href="https://sphinx-gallery.github.io">Gallery generated by Sphinx-Gallery</a></p>
 </section>
@@ -164,17 +162,21 @@ <h3>Navigation</h3>
 <ul class="current">
 <li class="toctree-l1 current"><a class="reference internal" href="../index.html">Example Gallery</a><ul class="current">
 <li class="toctree-l2"><a class="reference internal" href="../index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickflat-examples">Quickflat Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#quickstart-examples">Quickstart Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../index.html#utility-examples">Utility Examples</a></li>
 <li class="toctree-l2 current"><a class="reference internal" href="../index.html#webgl-examples">WebGL Examples</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="single_dataset.html">Create a 3D WebGL Viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="static.html">Create a static viewer</a></li>
-<li class="toctree-l3"><a class="reference internal" href="dynamic_with_custom_template.html">Dynamic viewer with html template</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">Static viewer with html template</a></li>
-<li class="toctree-l3"><a class="reference internal" href="multiple_datasets.html">Create a 3D WebGL Viewer with Multiple Datasets</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../datasets/index.html">Datasets Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../fsaverage/index.html">Examples with fsaverage</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../import_surface/index.html">Importing Surfaces Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickflat/index.html">Quickflat Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../quickstart/index.html">Quickstart Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../surface_analyses/index.html">Surface Analysis Examples</a></li>
+<li class="toctree-l3"><a class="reference internal" href="../utils/index.html">Utility Examples</a></li>
+<li class="toctree-l3 current"><a class="reference internal" href="index.html">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
@@ -189,13 +191,15 @@ <h3>Related Topics</h3>
 <ul>
   <li><a href="../../index.html">Documentation overview</a><ul>
   <li><a href="../index.html">Example Gallery</a><ul>
+  <li><a href="index.html">WebGL Examples</a><ul>
       <li>Previous: <a href="dynamic_with_custom_template.html" title="previous chapter">Dynamic viewer with html template</a></li>
       <li>Next: <a href="multiple_datasets.html" title="next chapter">Create a 3D WebGL Viewer with Multiple Datasets</a></li>
   </ul></li>
   </ul></li>
+  </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -203,8 +207,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -218,11 +222,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/auto_examples/webgl/static_with_custom_template.rst.txt"
diff --git a/colormaps.html b/colormaps.html
index ae8d2cdfc..b4065c362 100644
--- a/colormaps.html
+++ b/colormaps.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Colormaps &#8212; pycortex 1.2.4 documentation</title>
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-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
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-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <title>Colormaps &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Example Gallery" href="auto_examples/index.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,403 +37,600 @@
           <div class="body" role="main">
             
   <section id="colormaps">
-<h1>Colormaps<a class="headerlink" href="#colormaps" title="Permalink to this headline">¶</a></h1>
+<h1>Colormaps<a class="headerlink" href="#colormaps" title="Link to this heading">¶</a></h1>
 <p>There are a number of colormaps available in pycortex.
 A full list of those that can be used are below.</p>
 <p>Accent</p>
-<a class="reference internal image-reference" href="_images/Accent.png"><img alt="_images/Accent.png" src="_images/Accent.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Accent.png"><img alt="_images/Accent.png" src="_images/Accent.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Accent_r</p>
-<a class="reference internal image-reference" href="_images/Accent_r.png"><img alt="_images/Accent_r.png" src="_images/Accent_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Accent_r.png"><img alt="_images/Accent_r.png" src="_images/Accent_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BPROG</p>
-<a class="reference internal image-reference" href="_images/BPROG.png"><img alt="_images/BPROG.png" src="_images/BPROG.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BPROG.png"><img alt="_images/BPROG.png" src="_images/BPROG.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BROYG</p>
-<a class="reference internal image-reference" href="_images/BROYG.png"><img alt="_images/BROYG.png" src="_images/BROYG.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BROYG.png"><img alt="_images/BROYG.png" src="_images/BROYG.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BROYG_2D</p>
-<a class="reference internal image-reference" href="_images/BROYG_2D.png"><img alt="_images/BROYG_2D.png" src="_images/BROYG_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/BROYG_2D.png"><img alt="_images/BROYG_2D.png" src="_images/BROYG_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>Blues</p>
-<a class="reference internal image-reference" href="_images/Blues.png"><img alt="_images/Blues.png" src="_images/Blues.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Blues.png"><img alt="_images/Blues.png" src="_images/Blues.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Blues_r</p>
-<a class="reference internal image-reference" href="_images/Blues_r.png"><img alt="_images/Blues_r.png" src="_images/Blues_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Blues_r.png"><img alt="_images/Blues_r.png" src="_images/Blues_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BrBG</p>
-<a class="reference internal image-reference" href="_images/BrBG.png"><img alt="_images/BrBG.png" src="_images/BrBG.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BrBG.png"><img alt="_images/BrBG.png" src="_images/BrBG.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BrBG_r</p>
-<a class="reference internal image-reference" href="_images/BrBG_r.png"><img alt="_images/BrBG_r.png" src="_images/BrBG_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BrBG_r.png"><img alt="_images/BrBG_r.png" src="_images/BrBG_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BuBkRd</p>
-<a class="reference internal image-reference" href="_images/BuBkRd.png"><img alt="_images/BuBkRd.png" src="_images/BuBkRd.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BuBkRd.png"><img alt="_images/BuBkRd.png" src="_images/BuBkRd.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BuBkRd_alpha_2D</p>
-<a class="reference internal image-reference" href="_images/BuBkRd_alpha_2D.png"><img alt="_images/BuBkRd_alpha_2D.png" src="_images/BuBkRd_alpha_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/BuBkRd_alpha_2D.png"><img alt="_images/BuBkRd_alpha_2D.png" src="_images/BuBkRd_alpha_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>BuGn</p>
-<a class="reference internal image-reference" href="_images/BuGn.png"><img alt="_images/BuGn.png" src="_images/BuGn.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BuGn.png"><img alt="_images/BuGn.png" src="_images/BuGn.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BuGn_r</p>
-<a class="reference internal image-reference" href="_images/BuGn_r.png"><img alt="_images/BuGn_r.png" src="_images/BuGn_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BuGn_r.png"><img alt="_images/BuGn_r.png" src="_images/BuGn_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BuOr_2D</p>
-<a class="reference internal image-reference" href="_images/BuOr_2D.png"><img alt="_images/BuOr_2D.png" src="_images/BuOr_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/BuOr_2D.png"><img alt="_images/BuOr_2D.png" src="_images/BuOr_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>BuPu</p>
-<a class="reference internal image-reference" href="_images/BuPu.png"><img alt="_images/BuPu.png" src="_images/BuPu.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BuPu.png"><img alt="_images/BuPu.png" src="_images/BuPu.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BuPu_r</p>
-<a class="reference internal image-reference" href="_images/BuPu_r.png"><img alt="_images/BuPu_r.png" src="_images/BuPu_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BuPu_r.png"><img alt="_images/BuPu_r.png" src="_images/BuPu_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BuWtRd</p>
-<a class="reference internal image-reference" href="_images/BuWtRd.png"><img alt="_images/BuWtRd.png" src="_images/BuWtRd.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/BuWtRd.png"><img alt="_images/BuWtRd.png" src="_images/BuWtRd.png" style="width: 200px; height: 25px;" />
+</a>
 <p>BuWtRd_alpha</p>
-<a class="reference internal image-reference" href="_images/BuWtRd_alpha.png"><img alt="_images/BuWtRd_alpha.png" src="_images/BuWtRd_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/BuWtRd_alpha.png"><img alt="_images/BuWtRd_alpha.png" src="_images/BuWtRd_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>BuWtRd_black_2D</p>
-<a class="reference internal image-reference" href="_images/BuWtRd_black_2D.png"><img alt="_images/BuWtRd_black_2D.png" src="_images/BuWtRd_black_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/BuWtRd_black_2D.png"><img alt="_images/BuWtRd_black_2D.png" src="_images/BuWtRd_black_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>CyanBlueGrayRedPink</p>
-<a class="reference internal image-reference" href="_images/CyanBlueGrayRedPink.png"><img alt="_images/CyanBlueGrayRedPink.png" src="_images/CyanBlueGrayRedPink.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/CyanBlueGrayRedPink.png"><img alt="_images/CyanBlueGrayRedPink.png" src="_images/CyanBlueGrayRedPink.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Dark2</p>
-<a class="reference internal image-reference" href="_images/Dark2.png"><img alt="_images/Dark2.png" src="_images/Dark2.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Dark2.png"><img alt="_images/Dark2.png" src="_images/Dark2.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Dark2_r</p>
-<a class="reference internal image-reference" href="_images/Dark2_r.png"><img alt="_images/Dark2_r.png" src="_images/Dark2_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Dark2_r.png"><img alt="_images/Dark2_r.png" src="_images/Dark2_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>GnBu</p>
-<a class="reference internal image-reference" href="_images/GnBu.png"><img alt="_images/GnBu.png" src="_images/GnBu.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/GnBu.png"><img alt="_images/GnBu.png" src="_images/GnBu.png" style="width: 200px; height: 25px;" />
+</a>
 <p>GnBu_r</p>
-<a class="reference internal image-reference" href="_images/GnBu_r.png"><img alt="_images/GnBu_r.png" src="_images/GnBu_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/GnBu_r.png"><img alt="_images/GnBu_r.png" src="_images/GnBu_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>GreenWhiteBlue</p>
-<a class="reference internal image-reference" href="_images/GreenWhiteBlue.png"><img alt="_images/GreenWhiteBlue.png" src="_images/GreenWhiteBlue.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/GreenWhiteBlue.png"><img alt="_images/GreenWhiteBlue.png" src="_images/GreenWhiteBlue.png" style="width: 200px; height: 25px;" />
+</a>
 <p>GreenWhiteBlue_2D</p>
-<a class="reference internal image-reference" href="_images/GreenWhiteBlue_2D.png"><img alt="_images/GreenWhiteBlue_2D.png" src="_images/GreenWhiteBlue_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/GreenWhiteBlue_2D.png"><img alt="_images/GreenWhiteBlue_2D.png" src="_images/GreenWhiteBlue_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>GreenWhiteRed</p>
-<a class="reference internal image-reference" href="_images/GreenWhiteRed.png"><img alt="_images/GreenWhiteRed.png" src="_images/GreenWhiteRed.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/GreenWhiteRed.png"><img alt="_images/GreenWhiteRed.png" src="_images/GreenWhiteRed.png" style="width: 200px; height: 25px;" />
+</a>
 <p>GreenWhiteRed_2D</p>
-<a class="reference internal image-reference" href="_images/GreenWhiteRed_2D.png"><img alt="_images/GreenWhiteRed_2D.png" src="_images/GreenWhiteRed_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/GreenWhiteRed_2D.png"><img alt="_images/GreenWhiteRed_2D.png" src="_images/GreenWhiteRed_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>Greens</p>
-<a class="reference internal image-reference" href="_images/Greens.png"><img alt="_images/Greens.png" src="_images/Greens.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Greens.png"><img alt="_images/Greens.png" src="_images/Greens.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Greens_r</p>
-<a class="reference internal image-reference" href="_images/Greens_r.png"><img alt="_images/Greens_r.png" src="_images/Greens_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Greens_r.png"><img alt="_images/Greens_r.png" src="_images/Greens_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Greys</p>
-<a class="reference internal image-reference" href="_images/Greys.png"><img alt="_images/Greys.png" src="_images/Greys.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Greys.png"><img alt="_images/Greys.png" src="_images/Greys.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Greys_r</p>
-<a class="reference internal image-reference" href="_images/Greys_r.png"><img alt="_images/Greys_r.png" src="_images/Greys_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Greys_r.png"><img alt="_images/Greys_r.png" src="_images/Greys_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>J4</p>
-<a class="reference internal image-reference" href="_images/J4.png"><img alt="_images/J4.png" src="_images/J4.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/J4.png"><img alt="_images/J4.png" src="_images/J4.png" style="width: 200px; height: 25px;" />
+</a>
 <p>J4R</p>
-<a class="reference internal image-reference" href="_images/J4R.png"><img alt="_images/J4R.png" src="_images/J4R.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/J4R.png"><img alt="_images/J4R.png" src="_images/J4R.png" style="width: 200px; height: 25px;" />
+</a>
 <p>J4s</p>
-<a class="reference internal image-reference" href="_images/J4s.png"><img alt="_images/J4s.png" src="_images/J4s.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/J4s.png"><img alt="_images/J4s.png" src="_images/J4s.png" style="width: 200px; height: 25px;" />
+</a>
 <p>J5</p>
-<a class="reference internal image-reference" href="_images/J5.png"><img alt="_images/J5.png" src="_images/J5.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/J5.png"><img alt="_images/J5.png" src="_images/J5.png" style="width: 200px; height: 25px;" />
+</a>
 <p>J5R</p>
-<a class="reference internal image-reference" href="_images/J5R.png"><img alt="_images/J5R.png" src="_images/J5R.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/J5R.png"><img alt="_images/J5R.png" src="_images/J5R.png" style="width: 200px; height: 25px;" />
+</a>
 <p>J6</p>
-<a class="reference internal image-reference" href="_images/J6.png"><img alt="_images/J6.png" src="_images/J6.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/J6.png"><img alt="_images/J6.png" src="_images/J6.png" style="width: 200px; height: 25px;" />
+</a>
 <p>J6R</p>
-<a class="reference internal image-reference" href="_images/J6R.png"><img alt="_images/J6R.png" src="_images/J6R.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/J6R.png"><img alt="_images/J6R.png" src="_images/J6R.png" style="width: 200px; height: 25px;" />
+</a>
 <p>OrRd</p>
-<a class="reference internal image-reference" href="_images/OrRd.png"><img alt="_images/OrRd.png" src="_images/OrRd.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/OrRd.png"><img alt="_images/OrRd.png" src="_images/OrRd.png" style="width: 200px; height: 25px;" />
+</a>
 <p>OrRd_r</p>
-<a class="reference internal image-reference" href="_images/OrRd_r.png"><img alt="_images/OrRd_r.png" src="_images/OrRd_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/OrRd_r.png"><img alt="_images/OrRd_r.png" src="_images/OrRd_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Oranges</p>
-<a class="reference internal image-reference" href="_images/Oranges.png"><img alt="_images/Oranges.png" src="_images/Oranges.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Oranges.png"><img alt="_images/Oranges.png" src="_images/Oranges.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Oranges_r</p>
-<a class="reference internal image-reference" href="_images/Oranges_r.png"><img alt="_images/Oranges_r.png" src="_images/Oranges_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Oranges_r.png"><img alt="_images/Oranges_r.png" src="_images/Oranges_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PRGn</p>
-<a class="reference internal image-reference" href="_images/PRGn.png"><img alt="_images/PRGn.png" src="_images/PRGn.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PRGn.png"><img alt="_images/PRGn.png" src="_images/PRGn.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PRGn_r</p>
-<a class="reference internal image-reference" href="_images/PRGn_r.png"><img alt="_images/PRGn_r.png" src="_images/PRGn_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PRGn_r.png"><img alt="_images/PRGn_r.png" src="_images/PRGn_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PU_BuOr_covar</p>
-<a class="reference internal image-reference" href="_images/PU_BuOr_covar.png"><img alt="_images/PU_BuOr_covar.png" src="_images/PU_BuOr_covar.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/PU_BuOr_covar.png"><img alt="_images/PU_BuOr_covar.png" src="_images/PU_BuOr_covar.png" style="width: 200px; height: 200px;" />
+</a>
 <p>PU_BuOr_covar_alpha</p>
-<a class="reference internal image-reference" href="_images/PU_BuOr_covar_alpha.png"><img alt="_images/PU_BuOr_covar_alpha.png" src="_images/PU_BuOr_covar_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/PU_BuOr_covar_alpha.png"><img alt="_images/PU_BuOr_covar_alpha.png" src="_images/PU_BuOr_covar_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>PU_PinkBlue_covar</p>
-<a class="reference internal image-reference" href="_images/PU_PinkBlue_covar.png"><img alt="_images/PU_PinkBlue_covar.png" src="_images/PU_PinkBlue_covar.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/PU_PinkBlue_covar.png"><img alt="_images/PU_PinkBlue_covar.png" src="_images/PU_PinkBlue_covar.png" style="width: 200px; height: 200px;" />
+</a>
 <p>PU_RdBu_covar</p>
-<a class="reference internal image-reference" href="_images/PU_RdBu_covar.png"><img alt="_images/PU_RdBu_covar.png" src="_images/PU_RdBu_covar.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/PU_RdBu_covar.png"><img alt="_images/PU_RdBu_covar.png" src="_images/PU_RdBu_covar.png" style="width: 200px; height: 200px;" />
+</a>
 <p>PU_RdBu_covar_alpha</p>
-<a class="reference internal image-reference" href="_images/PU_RdBu_covar_alpha.png"><img alt="_images/PU_RdBu_covar_alpha.png" src="_images/PU_RdBu_covar_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/PU_RdBu_covar_alpha.png"><img alt="_images/PU_RdBu_covar_alpha.png" src="_images/PU_RdBu_covar_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>PU_RdGn_covar</p>
-<a class="reference internal image-reference" href="_images/PU_RdGn_covar.png"><img alt="_images/PU_RdGn_covar.png" src="_images/PU_RdGn_covar.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/PU_RdGn_covar.png"><img alt="_images/PU_RdGn_covar.png" src="_images/PU_RdGn_covar.png" style="width: 200px; height: 200px;" />
+</a>
 <p>Paired</p>
-<a class="reference internal image-reference" href="_images/Paired.png"><img alt="_images/Paired.png" src="_images/Paired.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Paired.png"><img alt="_images/Paired.png" src="_images/Paired.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Paired_r</p>
-<a class="reference internal image-reference" href="_images/Paired_r.png"><img alt="_images/Paired_r.png" src="_images/Paired_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Paired_r.png"><img alt="_images/Paired_r.png" src="_images/Paired_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Pastel1</p>
-<a class="reference internal image-reference" href="_images/Pastel1.png"><img alt="_images/Pastel1.png" src="_images/Pastel1.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Pastel1.png"><img alt="_images/Pastel1.png" src="_images/Pastel1.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Pastel1_r</p>
-<a class="reference internal image-reference" href="_images/Pastel1_r.png"><img alt="_images/Pastel1_r.png" src="_images/Pastel1_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Pastel1_r.png"><img alt="_images/Pastel1_r.png" src="_images/Pastel1_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Pastel2</p>
-<a class="reference internal image-reference" href="_images/Pastel2.png"><img alt="_images/Pastel2.png" src="_images/Pastel2.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Pastel2.png"><img alt="_images/Pastel2.png" src="_images/Pastel2.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Pastel2_r</p>
-<a class="reference internal image-reference" href="_images/Pastel2_r.png"><img alt="_images/Pastel2_r.png" src="_images/Pastel2_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Pastel2_r.png"><img alt="_images/Pastel2_r.png" src="_images/Pastel2_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PiYG</p>
-<a class="reference internal image-reference" href="_images/PiYG.png"><img alt="_images/PiYG.png" src="_images/PiYG.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PiYG.png"><img alt="_images/PiYG.png" src="_images/PiYG.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PiYG_r</p>
-<a class="reference internal image-reference" href="_images/PiYG_r.png"><img alt="_images/PiYG_r.png" src="_images/PiYG_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PiYG_r.png"><img alt="_images/PiYG_r.png" src="_images/PiYG_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PuBu</p>
-<a class="reference internal image-reference" href="_images/PuBu.png"><img alt="_images/PuBu.png" src="_images/PuBu.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PuBu.png"><img alt="_images/PuBu.png" src="_images/PuBu.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PuBuGn</p>
-<a class="reference internal image-reference" href="_images/PuBuGn.png"><img alt="_images/PuBuGn.png" src="_images/PuBuGn.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PuBuGn.png"><img alt="_images/PuBuGn.png" src="_images/PuBuGn.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PuBuGn_r</p>
-<a class="reference internal image-reference" href="_images/PuBuGn_r.png"><img alt="_images/PuBuGn_r.png" src="_images/PuBuGn_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PuBuGn_r.png"><img alt="_images/PuBuGn_r.png" src="_images/PuBuGn_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PuBu_r</p>
-<a class="reference internal image-reference" href="_images/PuBu_r.png"><img alt="_images/PuBu_r.png" src="_images/PuBu_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PuBu_r.png"><img alt="_images/PuBu_r.png" src="_images/PuBu_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PuOr</p>
-<a class="reference internal image-reference" href="_images/PuOr.png"><img alt="_images/PuOr.png" src="_images/PuOr.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PuOr.png"><img alt="_images/PuOr.png" src="_images/PuOr.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PuOr_r</p>
-<a class="reference internal image-reference" href="_images/PuOr_r.png"><img alt="_images/PuOr_r.png" src="_images/PuOr_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PuOr_r.png"><img alt="_images/PuOr_r.png" src="_images/PuOr_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PuRd</p>
-<a class="reference internal image-reference" href="_images/PuRd.png"><img alt="_images/PuRd.png" src="_images/PuRd.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PuRd.png"><img alt="_images/PuRd.png" src="_images/PuRd.png" style="width: 200px; height: 25px;" />
+</a>
 <p>PuRd_r</p>
-<a class="reference internal image-reference" href="_images/PuRd_r.png"><img alt="_images/PuRd_r.png" src="_images/PuRd_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/PuRd_r.png"><img alt="_images/PuRd_r.png" src="_images/PuRd_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Purples</p>
-<a class="reference internal image-reference" href="_images/Purples.png"><img alt="_images/Purples.png" src="_images/Purples.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Purples.png"><img alt="_images/Purples.png" src="_images/Purples.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Purples_r</p>
-<a class="reference internal image-reference" href="_images/Purples_r.png"><img alt="_images/Purples_r.png" src="_images/Purples_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Purples_r.png"><img alt="_images/Purples_r.png" src="_images/Purples_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RGrB_tsi</p>
-<a class="reference internal image-reference" href="_images/RGrB_tsi.png"><img alt="_images/RGrB_tsi.png" src="_images/RGrB_tsi.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RGrB_tsi.png"><img alt="_images/RGrB_tsi.png" src="_images/RGrB_tsi.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdBu</p>
-<a class="reference internal image-reference" href="_images/RdBu.png"><img alt="_images/RdBu.png" src="_images/RdBu.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdBu.png"><img alt="_images/RdBu.png" src="_images/RdBu.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdBu_2D</p>
-<a class="reference internal image-reference" href="_images/RdBu_2D.png"><img alt="_images/RdBu_2D.png" src="_images/RdBu_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/RdBu_2D.png"><img alt="_images/RdBu_2D.png" src="_images/RdBu_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>RdBu_2D_r</p>
-<a class="reference internal image-reference" href="_images/RdBu_2D_r.png"><img alt="_images/RdBu_2D_r.png" src="_images/RdBu_2D_r.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/RdBu_2D_r.png"><img alt="_images/RdBu_2D_r.png" src="_images/RdBu_2D_r.png" style="width: 200px; height: 200px;" />
+</a>
 <p>RdBu_covar</p>
-<a class="reference internal image-reference" href="_images/RdBu_covar.png"><img alt="_images/RdBu_covar.png" src="_images/RdBu_covar.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/RdBu_covar.png"><img alt="_images/RdBu_covar.png" src="_images/RdBu_covar.png" style="width: 200px; height: 200px;" />
+</a>
 <p>RdBu_covar2</p>
-<a class="reference internal image-reference" href="_images/RdBu_covar2.png"><img alt="_images/RdBu_covar2.png" src="_images/RdBu_covar2.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/RdBu_covar2.png"><img alt="_images/RdBu_covar2.png" src="_images/RdBu_covar2.png" style="width: 200px; height: 200px;" />
+</a>
 <p>RdBu_covar_alpha</p>
-<a class="reference internal image-reference" href="_images/RdBu_covar_alpha.png"><img alt="_images/RdBu_covar_alpha.png" src="_images/RdBu_covar_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/RdBu_covar_alpha.png"><img alt="_images/RdBu_covar_alpha.png" src="_images/RdBu_covar_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>RdBu_r</p>
-<a class="reference internal image-reference" href="_images/RdBu_r.png"><img alt="_images/RdBu_r.png" src="_images/RdBu_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdBu_r.png"><img alt="_images/RdBu_r.png" src="_images/RdBu_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdBu_r_alpha</p>
-<a class="reference internal image-reference" href="_images/RdBu_r_alpha.png"><img alt="_images/RdBu_r_alpha.png" src="_images/RdBu_r_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/RdBu_r_alpha.png"><img alt="_images/RdBu_r_alpha.png" src="_images/RdBu_r_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>RdGn_covar</p>
-<a class="reference internal image-reference" href="_images/RdGn_covar.png"><img alt="_images/RdGn_covar.png" src="_images/RdGn_covar.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/RdGn_covar.png"><img alt="_images/RdGn_covar.png" src="_images/RdGn_covar.png" style="width: 200px; height: 200px;" />
+</a>
 <p>RdGy</p>
-<a class="reference internal image-reference" href="_images/RdGy.png"><img alt="_images/RdGy.png" src="_images/RdGy.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdGy.png"><img alt="_images/RdGy.png" src="_images/RdGy.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdGy_r</p>
-<a class="reference internal image-reference" href="_images/RdGy_r.png"><img alt="_images/RdGy_r.png" src="_images/RdGy_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdGy_r.png"><img alt="_images/RdGy_r.png" src="_images/RdGy_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdPu</p>
-<a class="reference internal image-reference" href="_images/RdPu.png"><img alt="_images/RdPu.png" src="_images/RdPu.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdPu.png"><img alt="_images/RdPu.png" src="_images/RdPu.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdPu_r</p>
-<a class="reference internal image-reference" href="_images/RdPu_r.png"><img alt="_images/RdPu_r.png" src="_images/RdPu_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdPu_r.png"><img alt="_images/RdPu_r.png" src="_images/RdPu_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdYlBu</p>
-<a class="reference internal image-reference" href="_images/RdYlBu.png"><img alt="_images/RdYlBu.png" src="_images/RdYlBu.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdYlBu.png"><img alt="_images/RdYlBu.png" src="_images/RdYlBu.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdYlBu_r</p>
-<a class="reference internal image-reference" href="_images/RdYlBu_r.png"><img alt="_images/RdYlBu_r.png" src="_images/RdYlBu_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdYlBu_r.png"><img alt="_images/RdYlBu_r.png" src="_images/RdYlBu_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdYlGn</p>
-<a class="reference internal image-reference" href="_images/RdYlGn.png"><img alt="_images/RdYlGn.png" src="_images/RdYlGn.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdYlGn.png"><img alt="_images/RdYlGn.png" src="_images/RdYlGn.png" style="width: 200px; height: 25px;" />
+</a>
 <p>RdYlGn_r</p>
-<a class="reference internal image-reference" href="_images/RdYlGn_r.png"><img alt="_images/RdYlGn_r.png" src="_images/RdYlGn_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/RdYlGn_r.png"><img alt="_images/RdYlGn_r.png" src="_images/RdYlGn_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Reds</p>
-<a class="reference internal image-reference" href="_images/Reds.png"><img alt="_images/Reds.png" src="_images/Reds.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Reds.png"><img alt="_images/Reds.png" src="_images/Reds.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Reds_cov</p>
-<a class="reference internal image-reference" href="_images/Reds_cov.png"><img alt="_images/Reds_cov.png" src="_images/Reds_cov.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Reds_cov.png"><img alt="_images/Reds_cov.png" src="_images/Reds_cov.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Reds_r</p>
-<a class="reference internal image-reference" href="_images/Reds_r.png"><img alt="_images/Reds_r.png" src="_images/Reds_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Reds_r.png"><img alt="_images/Reds_r.png" src="_images/Reds_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Retinotopy_RYBCR</p>
-<a class="reference internal image-reference" href="_images/Retinotopy_RYBCR.png"><img alt="_images/Retinotopy_RYBCR.png" src="_images/Retinotopy_RYBCR.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Retinotopy_RYBCR.png"><img alt="_images/Retinotopy_RYBCR.png" src="_images/Retinotopy_RYBCR.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Retinotopy_RYBCR_2D</p>
-<a class="reference internal image-reference" href="_images/Retinotopy_RYBCR_2D.png"><img alt="_images/Retinotopy_RYBCR_2D.png" src="_images/Retinotopy_RYBCR_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/Retinotopy_RYBCR_2D.png"><img alt="_images/Retinotopy_RYBCR_2D.png" src="_images/Retinotopy_RYBCR_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>Retinotopy_RYBCR_alpha</p>
-<a class="reference internal image-reference" href="_images/Retinotopy_RYBCR_alpha.png"><img alt="_images/Retinotopy_RYBCR_alpha.png" src="_images/Retinotopy_RYBCR_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/Retinotopy_RYBCR_alpha.png"><img alt="_images/Retinotopy_RYBCR_alpha.png" src="_images/Retinotopy_RYBCR_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>Set1</p>
-<a class="reference internal image-reference" href="_images/Set1.png"><img alt="_images/Set1.png" src="_images/Set1.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Set1.png"><img alt="_images/Set1.png" src="_images/Set1.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Set1_r</p>
-<a class="reference internal image-reference" href="_images/Set1_r.png"><img alt="_images/Set1_r.png" src="_images/Set1_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Set1_r.png"><img alt="_images/Set1_r.png" src="_images/Set1_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Set2</p>
-<a class="reference internal image-reference" href="_images/Set2.png"><img alt="_images/Set2.png" src="_images/Set2.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Set2.png"><img alt="_images/Set2.png" src="_images/Set2.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Set2_r</p>
-<a class="reference internal image-reference" href="_images/Set2_r.png"><img alt="_images/Set2_r.png" src="_images/Set2_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Set2_r.png"><img alt="_images/Set2_r.png" src="_images/Set2_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Set3</p>
-<a class="reference internal image-reference" href="_images/Set3.png"><img alt="_images/Set3.png" src="_images/Set3.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Set3.png"><img alt="_images/Set3.png" src="_images/Set3.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Set3_r</p>
-<a class="reference internal image-reference" href="_images/Set3_r.png"><img alt="_images/Set3_r.png" src="_images/Set3_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Set3_r.png"><img alt="_images/Set3_r.png" src="_images/Set3_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Spectral</p>
-<a class="reference internal image-reference" href="_images/Spectral.png"><img alt="_images/Spectral.png" src="_images/Spectral.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Spectral.png"><img alt="_images/Spectral.png" src="_images/Spectral.png" style="width: 200px; height: 25px;" />
+</a>
 <p>Spectral_r</p>
-<a class="reference internal image-reference" href="_images/Spectral_r.png"><img alt="_images/Spectral_r.png" src="_images/Spectral_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/Spectral_r.png"><img alt="_images/Spectral_r.png" src="_images/Spectral_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>YlGn</p>
-<a class="reference internal image-reference" href="_images/YlGn.png"><img alt="_images/YlGn.png" src="_images/YlGn.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/YlGn.png"><img alt="_images/YlGn.png" src="_images/YlGn.png" style="width: 200px; height: 25px;" />
+</a>
 <p>YlGnBu</p>
-<a class="reference internal image-reference" href="_images/YlGnBu.png"><img alt="_images/YlGnBu.png" src="_images/YlGnBu.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/YlGnBu.png"><img alt="_images/YlGnBu.png" src="_images/YlGnBu.png" style="width: 200px; height: 25px;" />
+</a>
 <p>YlGnBu_r</p>
-<a class="reference internal image-reference" href="_images/YlGnBu_r.png"><img alt="_images/YlGnBu_r.png" src="_images/YlGnBu_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/YlGnBu_r.png"><img alt="_images/YlGnBu_r.png" src="_images/YlGnBu_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>YlGn_r</p>
-<a class="reference internal image-reference" href="_images/YlGn_r.png"><img alt="_images/YlGn_r.png" src="_images/YlGn_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/YlGn_r.png"><img alt="_images/YlGn_r.png" src="_images/YlGn_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>YlOrBr</p>
-<a class="reference internal image-reference" href="_images/YlOrBr.png"><img alt="_images/YlOrBr.png" src="_images/YlOrBr.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/YlOrBr.png"><img alt="_images/YlOrBr.png" src="_images/YlOrBr.png" style="width: 200px; height: 25px;" />
+</a>
 <p>YlOrBr_r</p>
-<a class="reference internal image-reference" href="_images/YlOrBr_r.png"><img alt="_images/YlOrBr_r.png" src="_images/YlOrBr_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/YlOrBr_r.png"><img alt="_images/YlOrBr_r.png" src="_images/YlOrBr_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>YlOrRd</p>
-<a class="reference internal image-reference" href="_images/YlOrRd.png"><img alt="_images/YlOrRd.png" src="_images/YlOrRd.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/YlOrRd.png"><img alt="_images/YlOrRd.png" src="_images/YlOrRd.png" style="width: 200px; height: 25px;" />
+</a>
 <p>YlOrRd_r</p>
-<a class="reference internal image-reference" href="_images/YlOrRd_r.png"><img alt="_images/YlOrRd_r.png" src="_images/YlOrRd_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/YlOrRd_r.png"><img alt="_images/YlOrRd_r.png" src="_images/YlOrRd_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>afmhot</p>
-<a class="reference internal image-reference" href="_images/afmhot.png"><img alt="_images/afmhot.png" src="_images/afmhot.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/afmhot.png"><img alt="_images/afmhot.png" src="_images/afmhot.png" style="width: 200px; height: 25px;" />
+</a>
 <p>afmhot_r</p>
-<a class="reference internal image-reference" href="_images/afmhot_r.png"><img alt="_images/afmhot_r.png" src="_images/afmhot_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/afmhot_r.png"><img alt="_images/afmhot_r.png" src="_images/afmhot_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>autumn</p>
-<a class="reference internal image-reference" href="_images/autumn.png"><img alt="_images/autumn.png" src="_images/autumn.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/autumn.png"><img alt="_images/autumn.png" src="_images/autumn.png" style="width: 200px; height: 25px;" />
+</a>
 <p>autumn_alpha</p>
-<a class="reference internal image-reference" href="_images/autumn_alpha.png"><img alt="_images/autumn_alpha.png" src="_images/autumn_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/autumn_alpha.png"><img alt="_images/autumn_alpha.png" src="_images/autumn_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>autumn_blkmin</p>
-<a class="reference internal image-reference" href="_images/autumn_blkmin.png"><img alt="_images/autumn_blkmin.png" src="_images/autumn_blkmin.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/autumn_blkmin.png"><img alt="_images/autumn_blkmin.png" src="_images/autumn_blkmin.png" style="width: 200px; height: 25px;" />
+</a>
 <p>autumn_blkmin_alpha_2D</p>
-<a class="reference internal image-reference" href="_images/autumn_blkmin_alpha_2D.png"><img alt="_images/autumn_blkmin_alpha_2D.png" src="_images/autumn_blkmin_alpha_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/autumn_blkmin_alpha_2D.png"><img alt="_images/autumn_blkmin_alpha_2D.png" src="_images/autumn_blkmin_alpha_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>autumn_r</p>
-<a class="reference internal image-reference" href="_images/autumn_r.png"><img alt="_images/autumn_r.png" src="_images/autumn_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/autumn_r.png"><img alt="_images/autumn_r.png" src="_images/autumn_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>autumnblack</p>
-<a class="reference internal image-reference" href="_images/autumnblack.png"><img alt="_images/autumnblack.png" src="_images/autumnblack.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/autumnblack.png"><img alt="_images/autumnblack.png" src="_images/autumnblack.png" style="width: 200px; height: 25px;" />
+</a>
 <p>autumnblack_alpha_2D</p>
-<a class="reference internal image-reference" href="_images/autumnblack_alpha_2D.png"><img alt="_images/autumnblack_alpha_2D.png" src="_images/autumnblack_alpha_2D.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/autumnblack_alpha_2D.png"><img alt="_images/autumnblack_alpha_2D.png" src="_images/autumnblack_alpha_2D.png" style="width: 200px; height: 200px;" />
+</a>
 <p>binary</p>
-<a class="reference internal image-reference" href="_images/binary.png"><img alt="_images/binary.png" src="_images/binary.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/binary.png"><img alt="_images/binary.png" src="_images/binary.png" style="width: 200px; height: 25px;" />
+</a>
 <p>binary_r</p>
-<a class="reference internal image-reference" href="_images/binary_r.png"><img alt="_images/binary_r.png" src="_images/binary_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/binary_r.png"><img alt="_images/binary_r.png" src="_images/binary_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>bone</p>
-<a class="reference internal image-reference" href="_images/bone.png"><img alt="_images/bone.png" src="_images/bone.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/bone.png"><img alt="_images/bone.png" src="_images/bone.png" style="width: 200px; height: 25px;" />
+</a>
 <p>bone_r</p>
-<a class="reference internal image-reference" href="_images/bone_r.png"><img alt="_images/bone_r.png" src="_images/bone_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/bone_r.png"><img alt="_images/bone_r.png" src="_images/bone_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>brg</p>
-<a class="reference internal image-reference" href="_images/brg.png"><img alt="_images/brg.png" src="_images/brg.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/brg.png"><img alt="_images/brg.png" src="_images/brg.png" style="width: 200px; height: 25px;" />
+</a>
 <p>brg_r</p>
-<a class="reference internal image-reference" href="_images/brg_r.png"><img alt="_images/brg_r.png" src="_images/brg_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/brg_r.png"><img alt="_images/brg_r.png" src="_images/brg_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>bwr</p>
-<a class="reference internal image-reference" href="_images/bwr.png"><img alt="_images/bwr.png" src="_images/bwr.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/bwr.png"><img alt="_images/bwr.png" src="_images/bwr.png" style="width: 200px; height: 25px;" />
+</a>
 <p>bwr_r</p>
-<a class="reference internal image-reference" href="_images/bwr_r.png"><img alt="_images/bwr_r.png" src="_images/bwr_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/bwr_r.png"><img alt="_images/bwr_r.png" src="_images/bwr_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>cool</p>
-<a class="reference internal image-reference" href="_images/cool.png"><img alt="_images/cool.png" src="_images/cool.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/cool.png"><img alt="_images/cool.png" src="_images/cool.png" style="width: 200px; height: 25px;" />
+</a>
 <p>cool_r</p>
-<a class="reference internal image-reference" href="_images/cool_r.png"><img alt="_images/cool_r.png" src="_images/cool_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/cool_r.png"><img alt="_images/cool_r.png" src="_images/cool_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>coolwarm</p>
-<a class="reference internal image-reference" href="_images/coolwarm.png"><img alt="_images/coolwarm.png" src="_images/coolwarm.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/coolwarm.png"><img alt="_images/coolwarm.png" src="_images/coolwarm.png" style="width: 200px; height: 25px;" />
+</a>
 <p>coolwarm_r</p>
-<a class="reference internal image-reference" href="_images/coolwarm_r.png"><img alt="_images/coolwarm_r.png" src="_images/coolwarm_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/coolwarm_r.png"><img alt="_images/coolwarm_r.png" src="_images/coolwarm_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>copper</p>
-<a class="reference internal image-reference" href="_images/copper.png"><img alt="_images/copper.png" src="_images/copper.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/copper.png"><img alt="_images/copper.png" src="_images/copper.png" style="width: 200px; height: 25px;" />
+</a>
 <p>copper_r</p>
-<a class="reference internal image-reference" href="_images/copper_r.png"><img alt="_images/copper_r.png" src="_images/copper_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/copper_r.png"><img alt="_images/copper_r.png" src="_images/copper_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>cubehelix</p>
-<a class="reference internal image-reference" href="_images/cubehelix.png"><img alt="_images/cubehelix.png" src="_images/cubehelix.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/cubehelix.png"><img alt="_images/cubehelix.png" src="_images/cubehelix.png" style="width: 200px; height: 25px;" />
+</a>
 <p>cubehelix_r</p>
-<a class="reference internal image-reference" href="_images/cubehelix_r.png"><img alt="_images/cubehelix_r.png" src="_images/cubehelix_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/cubehelix_r.png"><img alt="_images/cubehelix_r.png" src="_images/cubehelix_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>fire</p>
-<a class="reference internal image-reference" href="_images/fire.png"><img alt="_images/fire.png" src="_images/fire.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/fire.png"><img alt="_images/fire.png" src="_images/fire.png" style="width: 200px; height: 25px;" />
+</a>
 <p>fire_alpha</p>
-<a class="reference internal image-reference" href="_images/fire_alpha.png"><img alt="_images/fire_alpha.png" src="_images/fire_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/fire_alpha.png"><img alt="_images/fire_alpha.png" src="_images/fire_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>flag</p>
-<a class="reference internal image-reference" href="_images/flag.png"><img alt="_images/flag.png" src="_images/flag.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/flag.png"><img alt="_images/flag.png" src="_images/flag.png" style="width: 200px; height: 25px;" />
+</a>
 <p>flag_r</p>
-<a class="reference internal image-reference" href="_images/flag_r.png"><img alt="_images/flag_r.png" src="_images/flag_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/flag_r.png"><img alt="_images/flag_r.png" src="_images/flag_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>freesurfer_aseg_256</p>
-<a class="reference internal image-reference" href="_images/freesurfer_aseg_256.png"><img alt="_images/freesurfer_aseg_256.png" src="_images/freesurfer_aseg_256.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/freesurfer_aseg_256.png"><img alt="_images/freesurfer_aseg_256.png" src="_images/freesurfer_aseg_256.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_earth</p>
-<a class="reference internal image-reference" href="_images/gist_earth.png"><img alt="_images/gist_earth.png" src="_images/gist_earth.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_earth.png"><img alt="_images/gist_earth.png" src="_images/gist_earth.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_earth_r</p>
-<a class="reference internal image-reference" href="_images/gist_earth_r.png"><img alt="_images/gist_earth_r.png" src="_images/gist_earth_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_earth_r.png"><img alt="_images/gist_earth_r.png" src="_images/gist_earth_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_gray</p>
-<a class="reference internal image-reference" href="_images/gist_gray.png"><img alt="_images/gist_gray.png" src="_images/gist_gray.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_gray.png"><img alt="_images/gist_gray.png" src="_images/gist_gray.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_gray_r</p>
-<a class="reference internal image-reference" href="_images/gist_gray_r.png"><img alt="_images/gist_gray_r.png" src="_images/gist_gray_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_gray_r.png"><img alt="_images/gist_gray_r.png" src="_images/gist_gray_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_heat</p>
-<a class="reference internal image-reference" href="_images/gist_heat.png"><img alt="_images/gist_heat.png" src="_images/gist_heat.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_heat.png"><img alt="_images/gist_heat.png" src="_images/gist_heat.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_heat_r</p>
-<a class="reference internal image-reference" href="_images/gist_heat_r.png"><img alt="_images/gist_heat_r.png" src="_images/gist_heat_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_heat_r.png"><img alt="_images/gist_heat_r.png" src="_images/gist_heat_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_ncar</p>
-<a class="reference internal image-reference" href="_images/gist_ncar.png"><img alt="_images/gist_ncar.png" src="_images/gist_ncar.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_ncar.png"><img alt="_images/gist_ncar.png" src="_images/gist_ncar.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_ncar_r</p>
-<a class="reference internal image-reference" href="_images/gist_ncar_r.png"><img alt="_images/gist_ncar_r.png" src="_images/gist_ncar_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_ncar_r.png"><img alt="_images/gist_ncar_r.png" src="_images/gist_ncar_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_rainbow</p>
-<a class="reference internal image-reference" href="_images/gist_rainbow.png"><img alt="_images/gist_rainbow.png" src="_images/gist_rainbow.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_rainbow.png"><img alt="_images/gist_rainbow.png" src="_images/gist_rainbow.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_rainbow_r</p>
-<a class="reference internal image-reference" href="_images/gist_rainbow_r.png"><img alt="_images/gist_rainbow_r.png" src="_images/gist_rainbow_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_rainbow_r.png"><img alt="_images/gist_rainbow_r.png" src="_images/gist_rainbow_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_stern</p>
-<a class="reference internal image-reference" href="_images/gist_stern.png"><img alt="_images/gist_stern.png" src="_images/gist_stern.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_stern.png"><img alt="_images/gist_stern.png" src="_images/gist_stern.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_stern_r</p>
-<a class="reference internal image-reference" href="_images/gist_stern_r.png"><img alt="_images/gist_stern_r.png" src="_images/gist_stern_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_stern_r.png"><img alt="_images/gist_stern_r.png" src="_images/gist_stern_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_yarg</p>
-<a class="reference internal image-reference" href="_images/gist_yarg.png"><img alt="_images/gist_yarg.png" src="_images/gist_yarg.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_yarg.png"><img alt="_images/gist_yarg.png" src="_images/gist_yarg.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gist_yarg_r</p>
-<a class="reference internal image-reference" href="_images/gist_yarg_r.png"><img alt="_images/gist_yarg_r.png" src="_images/gist_yarg_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gist_yarg_r.png"><img alt="_images/gist_yarg_r.png" src="_images/gist_yarg_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gnuplot</p>
-<a class="reference internal image-reference" href="_images/gnuplot.png"><img alt="_images/gnuplot.png" src="_images/gnuplot.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gnuplot.png"><img alt="_images/gnuplot.png" src="_images/gnuplot.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gnuplot2</p>
-<a class="reference internal image-reference" href="_images/gnuplot2.png"><img alt="_images/gnuplot2.png" src="_images/gnuplot2.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gnuplot2.png"><img alt="_images/gnuplot2.png" src="_images/gnuplot2.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gnuplot2_r</p>
-<a class="reference internal image-reference" href="_images/gnuplot2_r.png"><img alt="_images/gnuplot2_r.png" src="_images/gnuplot2_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gnuplot2_r.png"><img alt="_images/gnuplot2_r.png" src="_images/gnuplot2_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gnuplot_r</p>
-<a class="reference internal image-reference" href="_images/gnuplot_r.png"><img alt="_images/gnuplot_r.png" src="_images/gnuplot_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gnuplot_r.png"><img alt="_images/gnuplot_r.png" src="_images/gnuplot_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gray</p>
-<a class="reference internal image-reference" href="_images/gray.png"><img alt="_images/gray.png" src="_images/gray.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gray.png"><img alt="_images/gray.png" src="_images/gray.png" style="width: 200px; height: 25px;" />
+</a>
 <p>gray_r</p>
-<a class="reference internal image-reference" href="_images/gray_r.png"><img alt="_images/gray_r.png" src="_images/gray_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/gray_r.png"><img alt="_images/gray_r.png" src="_images/gray_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>hot</p>
-<a class="reference internal image-reference" href="_images/hot.png"><img alt="_images/hot.png" src="_images/hot.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/hot.png"><img alt="_images/hot.png" src="_images/hot.png" style="width: 200px; height: 25px;" />
+</a>
 <p>hot_alpha</p>
-<a class="reference internal image-reference" href="_images/hot_alpha.png"><img alt="_images/hot_alpha.png" src="_images/hot_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/hot_alpha.png"><img alt="_images/hot_alpha.png" src="_images/hot_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>hot_r</p>
-<a class="reference internal image-reference" href="_images/hot_r.png"><img alt="_images/hot_r.png" src="_images/hot_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/hot_r.png"><img alt="_images/hot_r.png" src="_images/hot_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>hsv</p>
-<a class="reference internal image-reference" href="_images/hsv.png"><img alt="_images/hsv.png" src="_images/hsv.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/hsv.png"><img alt="_images/hsv.png" src="_images/hsv.png" style="width: 200px; height: 25px;" />
+</a>
 <p>hsv_r</p>
-<a class="reference internal image-reference" href="_images/hsv_r.png"><img alt="_images/hsv_r.png" src="_images/hsv_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/hsv_r.png"><img alt="_images/hsv_r.png" src="_images/hsv_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>inferno</p>
-<a class="reference internal image-reference" href="_images/inferno.png"><img alt="_images/inferno.png" src="_images/inferno.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/inferno.png"><img alt="_images/inferno.png" src="_images/inferno.png" style="width: 200px; height: 25px;" />
+</a>
 <p>inferno_r</p>
-<a class="reference internal image-reference" href="_images/inferno_r.png"><img alt="_images/inferno_r.png" src="_images/inferno_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/inferno_r.png"><img alt="_images/inferno_r.png" src="_images/inferno_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>jet</p>
-<a class="reference internal image-reference" href="_images/jet.png"><img alt="_images/jet.png" src="_images/jet.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/jet.png"><img alt="_images/jet.png" src="_images/jet.png" style="width: 200px; height: 25px;" />
+</a>
 <p>jet_r</p>
-<a class="reference internal image-reference" href="_images/jet_r.png"><img alt="_images/jet_r.png" src="_images/jet_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/jet_r.png"><img alt="_images/jet_r.png" src="_images/jet_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>magma</p>
-<a class="reference internal image-reference" href="_images/magma.png"><img alt="_images/magma.png" src="_images/magma.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/magma.png"><img alt="_images/magma.png" src="_images/magma.png" style="width: 200px; height: 25px;" />
+</a>
 <p>magma_r</p>
-<a class="reference internal image-reference" href="_images/magma_r.png"><img alt="_images/magma_r.png" src="_images/magma_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/magma_r.png"><img alt="_images/magma_r.png" src="_images/magma_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>nipy_spectral</p>
-<a class="reference internal image-reference" href="_images/nipy_spectral.png"><img alt="_images/nipy_spectral.png" src="_images/nipy_spectral.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/nipy_spectral.png"><img alt="_images/nipy_spectral.png" src="_images/nipy_spectral.png" style="width: 200px; height: 25px;" />
+</a>
 <p>nipy_spectral_r</p>
-<a class="reference internal image-reference" href="_images/nipy_spectral_r.png"><img alt="_images/nipy_spectral_r.png" src="_images/nipy_spectral_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/nipy_spectral_r.png"><img alt="_images/nipy_spectral_r.png" src="_images/nipy_spectral_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>ocean</p>
-<a class="reference internal image-reference" href="_images/ocean.png"><img alt="_images/ocean.png" src="_images/ocean.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/ocean.png"><img alt="_images/ocean.png" src="_images/ocean.png" style="width: 200px; height: 25px;" />
+</a>
 <p>ocean_r</p>
-<a class="reference internal image-reference" href="_images/ocean_r.png"><img alt="_images/ocean_r.png" src="_images/ocean_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/ocean_r.png"><img alt="_images/ocean_r.png" src="_images/ocean_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>pink</p>
-<a class="reference internal image-reference" href="_images/pink.png"><img alt="_images/pink.png" src="_images/pink.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/pink.png"><img alt="_images/pink.png" src="_images/pink.png" style="width: 200px; height: 25px;" />
+</a>
 <p>pink_r</p>
-<a class="reference internal image-reference" href="_images/pink_r.png"><img alt="_images/pink_r.png" src="_images/pink_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/pink_r.png"><img alt="_images/pink_r.png" src="_images/pink_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>plasma</p>
-<a class="reference internal image-reference" href="_images/plasma.png"><img alt="_images/plasma.png" src="_images/plasma.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/plasma.png"><img alt="_images/plasma.png" src="_images/plasma.png" style="width: 200px; height: 25px;" />
+</a>
 <p>plasma_alpha</p>
-<a class="reference internal image-reference" href="_images/plasma_alpha.png"><img alt="_images/plasma_alpha.png" src="_images/plasma_alpha.png" style="width: 200px; height: 200px;" /></a>
+<a class="reference internal image-reference" href="_images/plasma_alpha.png"><img alt="_images/plasma_alpha.png" src="_images/plasma_alpha.png" style="width: 200px; height: 200px;" />
+</a>
 <p>plasma_r</p>
-<a class="reference internal image-reference" href="_images/plasma_r.png"><img alt="_images/plasma_r.png" src="_images/plasma_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/plasma_r.png"><img alt="_images/plasma_r.png" src="_images/plasma_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>prism</p>
-<a class="reference internal image-reference" href="_images/prism.png"><img alt="_images/prism.png" src="_images/prism.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/prism.png"><img alt="_images/prism.png" src="_images/prism.png" style="width: 200px; height: 25px;" />
+</a>
 <p>prism_r</p>
-<a class="reference internal image-reference" href="_images/prism_r.png"><img alt="_images/prism_r.png" src="_images/prism_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/prism_r.png"><img alt="_images/prism_r.png" src="_images/prism_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>rainbow</p>
-<a class="reference internal image-reference" href="_images/rainbow.png"><img alt="_images/rainbow.png" src="_images/rainbow.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/rainbow.png"><img alt="_images/rainbow.png" src="_images/rainbow.png" style="width: 200px; height: 25px;" />
+</a>
 <p>rainbow_r</p>
-<a class="reference internal image-reference" href="_images/rainbow_r.png"><img alt="_images/rainbow_r.png" src="_images/rainbow_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/rainbow_r.png"><img alt="_images/rainbow_r.png" src="_images/rainbow_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>seismic</p>
-<a class="reference internal image-reference" href="_images/seismic.png"><img alt="_images/seismic.png" src="_images/seismic.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/seismic.png"><img alt="_images/seismic.png" src="_images/seismic.png" style="width: 200px; height: 25px;" />
+</a>
 <p>seismic_r</p>
-<a class="reference internal image-reference" href="_images/seismic_r.png"><img alt="_images/seismic_r.png" src="_images/seismic_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/seismic_r.png"><img alt="_images/seismic_r.png" src="_images/seismic_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>spectral</p>
-<a class="reference internal image-reference" href="_images/spectral.png"><img alt="_images/spectral.png" src="_images/spectral.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/spectral.png"><img alt="_images/spectral.png" src="_images/spectral.png" style="width: 200px; height: 25px;" />
+</a>
 <p>spectral_r</p>
-<a class="reference internal image-reference" href="_images/spectral_r.png"><img alt="_images/spectral_r.png" src="_images/spectral_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/spectral_r.png"><img alt="_images/spectral_r.png" src="_images/spectral_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>spring</p>
-<a class="reference internal image-reference" href="_images/spring.png"><img alt="_images/spring.png" src="_images/spring.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/spring.png"><img alt="_images/spring.png" src="_images/spring.png" style="width: 200px; height: 25px;" />
+</a>
 <p>spring_r</p>
-<a class="reference internal image-reference" href="_images/spring_r.png"><img alt="_images/spring_r.png" src="_images/spring_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/spring_r.png"><img alt="_images/spring_r.png" src="_images/spring_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>summer</p>
-<a class="reference internal image-reference" href="_images/summer.png"><img alt="_images/summer.png" src="_images/summer.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/summer.png"><img alt="_images/summer.png" src="_images/summer.png" style="width: 200px; height: 25px;" />
+</a>
 <p>summer_r</p>
-<a class="reference internal image-reference" href="_images/summer_r.png"><img alt="_images/summer_r.png" src="_images/summer_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/summer_r.png"><img alt="_images/summer_r.png" src="_images/summer_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>terrain</p>
-<a class="reference internal image-reference" href="_images/terrain.png"><img alt="_images/terrain.png" src="_images/terrain.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/terrain.png"><img alt="_images/terrain.png" src="_images/terrain.png" style="width: 200px; height: 25px;" />
+</a>
 <p>terrain_r</p>
-<a class="reference internal image-reference" href="_images/terrain_r.png"><img alt="_images/terrain_r.png" src="_images/terrain_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/terrain_r.png"><img alt="_images/terrain_r.png" src="_images/terrain_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>viridis</p>
-<a class="reference internal image-reference" href="_images/viridis.png"><img alt="_images/viridis.png" src="_images/viridis.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/viridis.png"><img alt="_images/viridis.png" src="_images/viridis.png" style="width: 200px; height: 25px;" />
+</a>
 <p>viridis_r</p>
-<a class="reference internal image-reference" href="_images/viridis_r.png"><img alt="_images/viridis_r.png" src="_images/viridis_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/viridis_r.png"><img alt="_images/viridis_r.png" src="_images/viridis_r.png" style="width: 200px; height: 25px;" />
+</a>
 <p>winter</p>
-<a class="reference internal image-reference" href="_images/winter.png"><img alt="_images/winter.png" src="_images/winter.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/winter.png"><img alt="_images/winter.png" src="_images/winter.png" style="width: 200px; height: 25px;" />
+</a>
 <p>winter_r</p>
-<a class="reference internal image-reference" href="_images/winter_r.png"><img alt="_images/winter_r.png" src="_images/winter_r.png" style="width: 200px; height: 25px;" /></a>
+<a class="reference internal image-reference" href="_images/winter_r.png"><img alt="_images/winter_r.png" src="_images/winter_r.png" style="width: 200px; height: 25px;" />
+</a>
 </section>
 
 
@@ -486,7 +682,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -494,8 +690,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -509,11 +705,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/colormaps.rst.txt"
diff --git a/database.html b/database.html
index 30aa4884f..46a3a2c53 100644
--- a/database.html
+++ b/database.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Surface Database &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Surface Database &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Alignments" href="align.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,7 +37,7 @@
           <div class="body" role="main">
             
   <section id="surface-database">
-<h1>Surface Database<a class="headerlink" href="#surface-database" title="Permalink to this headline">¶</a></h1>
+<h1>Surface Database<a class="headerlink" href="#surface-database" title="Link to this heading">¶</a></h1>
 <p>Pycortex creates and maintains a simple flat-file database store all the data required to plot data on a cortical sheet (surfaces, transforms, masks, regions-of-interest, etc.). By default, the filestore is in <code class="docutils literal notranslate"><span class="pre">INSTALL_DATA/share/pycortex/</span></code>. This location can be customized in your <code class="docutils literal notranslate"><span class="pre">options.cfg</span></code> file. You can find the filestore directory by running:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="n">cortex</span><span class="o">.</span><span class="n">database</span><span class="o">.</span><span class="n">default_filestore</span>
@@ -46,16 +45,16 @@ <h1>Surface Database<a class="headerlink" href="#surface-database" title="Permal
 </div>
 <p>Within the filestore, each subject has their own directory containing all associated data.</p>
 <section id="anatomical-scans">
-<h2>Anatomical scans<a class="headerlink" href="#anatomical-scans" title="Permalink to this headline">¶</a></h2>
+<h2>Anatomical scans<a class="headerlink" href="#anatomical-scans" title="Link to this heading">¶</a></h2>
 <p>Each subject must have an anatomical scan.</p>
 </section>
 <section id="cache">
-<h2>Cache<a class="headerlink" href="#cache" title="Permalink to this headline">¶</a></h2>
+<h2>Cache<a class="headerlink" href="#cache" title="Link to this heading">¶</a></h2>
 <p>The cache holds the sequence of files necessary for the webgl viewer. <a class="reference external" href="http://openctm.sourceforge.net/">OpenCTM</a> is a geometry specification that allows very small files to reduce bandwidth. Files are stored with the format <code class="docutils literal notranslate"><span class="pre">{subject}_{transform}_[{types}]_{compression}_{level}.{suffix}</span></code>. Each subject and transform is associated with a triplet of files called a “ctmpack”. Each ctmpack contains a json file specifying the limits of the data, a ctm file consisting of concatenated left and right hemispheres, and an <a class="reference external" href="http://en.wikipedia.org/wiki/Scalable_Vector_Graphics">SVG</a> consisting of the roi’s with the data layers deleted. There is a unique ctmpack for each subject, transform, and set of included inflations. Raw CTMs are generated for view.webshow, whereas MG2 CTM’s are generated for static WebGL views. These files are considered disposable, and are generated on demand.</p>
 <p>The flatcache holds the voxel indices for quickly generating a flatmap. They have the format <code class="docutils literal notranslate"><span class="pre">{subject}_{transform}_{height}_{date}.pkl</span></code>. A different flatcache must be generated for each datamap height. These files are also disposable and are generated on demand. This cache allows quickflat to satisfy its namesake.</p>
 </section>
 <section id="surfaces">
-<h2>Surfaces<a class="headerlink" href="#surfaces" title="Permalink to this headline">¶</a></h2>
+<h2>Surfaces<a class="headerlink" href="#surfaces" title="Link to this heading">¶</a></h2>
 <p>Pycortex fundamentally operates on triangular mesh geometry computed from a subject’s anatomy. Surface geometries are usually created from a <a class="reference external" href="http://en.wikipedia.org/wiki/Marching_cubes">marching cubes</a> reconstruction of the segmented cortical sheet. This undistorted reconstruction in the original anatomical space is known as the fiducial surface. The fiducial surface is inflated and cut along anatomical and functional boundaries and is morphed by an energy metric to be on a flattened 2D surface.</p>
 <p>Unfortunately, pycortex currently has no way of generating or editing these geometries directly. The recommended software for doing segmentation and flattening is <a class="reference external" href="http://surfer.nmr.mgh.harvard.edu/">Freesurfer</a>. Another package which is generally more user-friendly is <a class="reference external" href="http://brainvis.wustl.edu/wiki/index.php/Main_Page">Caret</a>. pycortex includes some utility functions to interact with <a class="reference external" href="http://surfer.nmr.mgh.harvard.edu/">Freesurfer</a>, documented ‘’’HERE’’’.</p>
 <p>A surface in pycortex is any file specifying the triangular mesh geometry of a subject. Surfaces may be stored in any one of <strong>OFF</strong>, <strong>VTK</strong>, or <strong>npz</strong> formats. The highest performance is achieved with <strong>npz</strong> since it is binary and compressed. VTK is also efficient, having a <cite>Cython</cite> module to read files. Inside the filestore, surface names are formatted as <code class="docutils literal notranslate"><span class="pre">{type}_{hemisphere}.{format}</span></code>. Surfaces generally have three variables associated:</p>
@@ -69,11 +68,11 @@ <h2>Surfaces<a class="headerlink" href="#surfaces" title="Permalink to this head
 <p>The surface files for a specific subject and hemisphere must have the same number of vertices across all the different types. Without this information, the mapping from fiducial to flatmap is not preserved, and there is no way to display data on the flatmap. <a class="reference external" href="http://surfer.nmr.mgh.harvard.edu/">Freesurfer</a> surfaces preserve this relationship, and can be automatically imported into the database. pycortex does not check the validity of surfaces, and will break in unexpected ways if the number of vertices do not match! It is your job to make sure that all surfaces are valid.</p>
 <p>In order to plot cortical data for a subject, at least the fiducial and flat geometries must be available for that subject. Surfaces must be stored in VTK v. 1 format (also known as the ASCII format).</p>
 <section id="accessing-surfaces">
-<h3>Accessing surfaces<a class="headerlink" href="#accessing-surfaces" title="Permalink to this headline">¶</a></h3>
-<p>Two methods exist for accessing the surface data once they are committed to the database: direct command access, or via a convienient tab completion interface.</p>
+<h3>Accessing surfaces<a class="headerlink" href="#accessing-surfaces" title="Link to this heading">¶</a></h3>
+<p>Two methods exist for accessing the surface data once they are committed to the database: direct command access, or via a convenient tab completion interface.</p>
 </section>
 <section id="command-access">
-<h3>Command access<a class="headerlink" href="#command-access" title="Permalink to this headline">¶</a></h3>
+<h3>Command access<a class="headerlink" href="#command-access" title="Link to this heading">¶</a></h3>
 <p>For the direct command access, there are two call signatures:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="n">pts</span><span class="p">,</span> <span class="n">polys</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">get_surf</span><span class="p">(</span><span class="s1">&#39;S1&#39;</span><span class="p">,</span> <span class="s1">&#39;fiducial&#39;</span><span class="p">,</span> <span class="n">merge</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
@@ -89,7 +88,7 @@ <h3>Command access<a class="headerlink" href="#command-access" title="Permalink
 <p>If you only specify <code class="docutils literal notranslate"><span class="pre">hemisphere='left'</span></code> or <code class="docutils literal notranslate"><span class="pre">'right'</span></code>, only one hemisphere will be returned, and the return will again be only points, polygons, and normals.</p>
 </section>
 <section id="tab-interface">
-<h3>Tab interface<a class="headerlink" href="#tab-interface" title="Permalink to this headline">¶</a></h3>
+<h3>Tab interface<a class="headerlink" href="#tab-interface" title="Link to this heading">¶</a></h3>
 <p>An alternate way to browse the database is using <a class="reference external" href="http://ipython.org/">ipython</a> and its tab completion feature. If you type the following:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">In</span> <span class="p">[</span><span class="mi">1</span><span class="p">]:</span> <span class="kn">import</span> <span class="nn">cortex</span>
 <span class="n">In</span> <span class="p">[</span><span class="mi">2</span><span class="p">]:</span> <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span>
@@ -120,16 +119,16 @@ <h3>Tab interface<a class="headerlink" href="#tab-interface" title="Permalink to
 </div>
 </section>
 <section id="adding-new-surfaces">
-<h3>Adding new surfaces<a class="headerlink" href="#adding-new-surfaces" title="Permalink to this headline">¶</a></h3>
+<h3>Adding new surfaces<a class="headerlink" href="#adding-new-surfaces" title="Link to this heading">¶</a></h3>
 <p>Surface management is implemented through your file manager. To add a new surface to an existing subject, copy the surface file into <code class="docutils literal notranslate"><span class="pre">{$FILESTORE}/{$SUBJECT}/surfaces/</span></code> with the format <code class="docutils literal notranslate"><span class="pre">{type}_{hemisphere}.{format}</span></code>, where <code class="docutils literal notranslate"><span class="pre">hemisphere</span></code> is <strong>lh</strong> or <strong>rh</strong>, and format is one of <strong>OFF</strong>, <strong>VTK</strong>, or an <strong>npz</strong> file with keys ‘pts’ and ‘polys’. If you have a python session with pycortex imported already, please reload the session. The new surfaces should be accessible via the given interfaces immediately.</p>
 <p>In order to adequately utilize all the functions in pycortex, please add the <strong>fiducial</strong>, <strong>inflated</strong>, and <strong>flat</strong> geometries for both hemispheres. Again, make sure that all the surface types for a given subject and hemisphere have the same number of vertices, otherwise unexpected things may happen!</p>
 </section>
 </section>
 <section id="transforms">
-<h2>Transforms<a class="headerlink" href="#transforms" title="Permalink to this headline">¶</a></h2>
+<h2>Transforms<a class="headerlink" href="#transforms" title="Link to this heading">¶</a></h2>
 <p>Transformations in pycortex are stored as <strong>affine</strong> matrices encoded in magnet isocenter space, as defined in the <a class="reference external" href="http://nifti.nimh.nih.gov/nifti-1/">Nifti</a> headers.</p>
 <p>Each transform is stored in its own subdirectory containing two files: <code class="docutils literal notranslate"><span class="pre">matrices.xfm</span></code>, and <code class="docutils literal notranslate"><span class="pre">reference.nii.gz</span></code>. Masks are also stored in the transforms directory.</p>
-<p>Transforms are saved as JSON-encoded text files. They have the format <code class="docutils literal notranslate"><span class="pre">{subject}_{transform}.xfm</span></code>. There are four fields in this JSON structure: <code class="docutils literal notranslate"><span class="pre">subject</span></code>, <code class="docutils literal notranslate"><span class="pre">epifile</span></code>, <code class="docutils literal notranslate"><span class="pre">coord</span></code>, <code class="docutils literal notranslate"><span class="pre">magnet</span></code>. <code class="docutils literal notranslate"><span class="pre">epifile</span></code> gives the filename of the functional volume (EPI) that served as the reference for this transform. <code class="docutils literal notranslate"><span class="pre">coord</span></code> stores the transform from fiducial to coordinate space (for fast index lookups). <code class="docutils literal notranslate"><span class="pre">magnet</span></code> stores the transform from the fiducial to the magnet space, as defined in the return of <code class="docutils literal notranslate"><span class="pre">nibabel.get_affine()</span></code>.</p>
+<p>Transforms are saved as JSON-encoded text files. They have the format <code class="docutils literal notranslate"><span class="pre">{subject}_{transform}.xfm</span></code>. There are four fields in this JSON structure: <code class="docutils literal notranslate"><span class="pre">subject</span></code>, <code class="docutils literal notranslate"><span class="pre">epifile</span></code>, <code class="docutils literal notranslate"><span class="pre">coord</span></code>, <code class="docutils literal notranslate"><span class="pre">magnet</span></code>. <code class="docutils literal notranslate"><span class="pre">epifile</span></code> gives the filename of the functional volume (EPI) that served as the reference for this transform. <code class="docutils literal notranslate"><span class="pre">coord</span></code> stores the transform from fiducial to coordinate space (for fast index lookups). <code class="docutils literal notranslate"><span class="pre">magnet</span></code> stores the transform from the fiducial to the magnet space, as defined in the return of <code class="docutils literal notranslate"><span class="pre">nibabel.affine</span></code>.</p>
 <p>Reference volumes are typically in <a class="reference external" href="http://nifti.nimh.nih.gov/nifti-1/">Nifti</a> format (<a href="#id1"><span class="problematic" id="id2">*</span></a>.nii), but can be any format that <a class="reference external" href="http://nipy.sourceforge.net/nibabel/">nibabel</a> understands. These are stored to ensure that we know what the reference for any transform was. This makes it possible to visually verify and tweak alignments as well as keep a static store of images for future coregistrations.</p>
 <p>Similar to the surfaces, transforms can be access through two methods: direct command access, and the tab interface.</p>
 <p>Command access looks like this:</p>
@@ -164,7 +163,7 @@ <h2>Transforms<a class="headerlink" href="#transforms" title="Permalink to this
 <span class="n">cortex</span><span class="o">.</span><span class="n">db</span><span class="o">.</span><span class="n">load_xfm</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">xfm</span><span class="p">,</span> <span class="n">xfmtype</span><span class="o">=</span><span class="s1">&#39;magnet&#39;</span><span class="p">,</span> <span class="n">reference</span><span class="o">=</span><span class="s1">&#39;path_to_functional.nii&#39;</span><span class="p">)</span>
 </pre></div>
 </div>
-<p>One of the fundamental reasons for carefully aligning surfaces is to allow the creation and use of cortical masks. This limits the number of voxels you need to model. Traditionally, these masks are created by selecting the set of nearest neighbor voxels for each vertex on the transformed surface. Unfortunately, pycortex’s advanced per-pixel mapping precludes the use of this simple mask, since faces could potentially intersect with voxel corners which are not in this simple mask. Thus, the default masks in pycortex use a distance metric to compute mask membership.</p>
+<p id="database-masks">One of the fundamental reasons for carefully aligning surfaces is to allow the creation and use of cortical masks. This limits the number of voxels you need to model. Traditionally, these masks are created by selecting the set of nearest neighbor voxels for each vertex on the transformed surface. Unfortunately, pycortex’s advanced per-pixel mapping precludes the use of this simple mask, since faces could potentially intersect with voxel corners which are not in this simple mask. Thus, the default masks in pycortex use a distance metric to compute mask membership.</p>
 <p>Masks were added into pycortex in May 2013, due to previous issues with masked data and the addition of the per-pixel mapping. Masked datasets are further discussed in the datasets page.</p>
 <p>A mask is specified by three variables: <strong>subject</strong>, <strong>transform</strong>, and <strong>mask type</strong>. pycortex defines two named masks for each transform by default. These are the <code class="docutils literal notranslate"><span class="pre">'thick'</span></code> and the <code class="docutils literal notranslate"><span class="pre">'thin'</span></code> masks. They correspond to a distance of 8 mm and 2 mm, respectively, from any given cortical vertex. Additionally, masks corresponding to known mapper types (such as <code class="docutils literal notranslate"><span class="pre">'nearest'</span></code> and <code class="docutils literal notranslate"><span class="pre">'trilinear'</span></code>) are available. If the subject has both pial and white matter surfaces, all voxels of exactly the cortical thickness distance from each vertex are selected from the fiducial surface. To retrieve the thick mask for S1 using the fullhead transform:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
@@ -179,11 +178,11 @@ <h2>Transforms<a class="headerlink" href="#transforms" title="Permalink to this
 </div>
 </section>
 <section id="surface-info">
-<h2>Surface info<a class="headerlink" href="#surface-info" title="Permalink to this headline">¶</a></h2>
+<h2>Surface info<a class="headerlink" href="#surface-info" title="Link to this heading">¶</a></h2>
 <p>The filestore also manages several important quantifications about the surfaces. These include Tissot’s Indicatrix and the flatmap surface distortion. There are stored in the <code class="docutils literal notranslate"><span class="pre">/surface_info</span></code> directory.</p>
 </section>
 <section id="views">
-<h2>Views<a class="headerlink" href="#views" title="Permalink to this headline">¶</a></h2>
+<h2>Views<a class="headerlink" href="#views" title="Link to this heading">¶</a></h2>
 <p>It is often useful to be able to store, recall, and share specific perspectives onto a 3D model of the brain. The filestore stores these “views” as JSON files containing parameters such as altitude, radius, target, and azimuth. After opening a webgl viewer and manipulating the brain using the browser GUI, a view can be stored by calling:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">viewer</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">webgl</span><span class="o">.</span><span class="n">show</span><span class="p">(</span><span class="n">volume</span><span class="p">)</span>
 <span class="n">viewer</span><span class="o">.</span><span class="n">save_view</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">name</span><span class="p">)</span>
@@ -195,46 +194,46 @@ <h2>Views<a class="headerlink" href="#views" title="Permalink to this headline">
 </div>
 </section>
 <section id="overlays-svg">
-<h2><code class="docutils literal notranslate"><span class="pre">overlays.svg</span></code><a class="headerlink" href="#overlays-svg" title="Permalink to this headline">¶</a></h2>
+<h2><code class="docutils literal notranslate"><span class="pre">overlays.svg</span></code><a class="headerlink" href="#overlays-svg" title="Link to this heading">¶</a></h2>
 <p>Overlays are stored as <a class="reference external" href="http://en.wikipedia.org/wiki/Scalable_Vector_Graphics">SVG</a>’s. This is where surface ROIs are defined. Since these surface ROIs are invariant to transform, only one ROI map is needed for each subject. These SVGs are automatically created for a subject if you call <code class="docutils literal notranslate"><span class="pre">cortex.add_roi</span></code>. ROI overlays are created and edited in <a class="reference external" href="http://inkscape.org/">Inkscape</a>. For more information, see <a href="#id3"><span class="problematic" id="id4">:module:`svgroi.py`</span></a>.</p>
 </section>
 <section id="rois-svg">
-<h2><code class="docutils literal notranslate"><span class="pre">rois.svg</span></code><a class="headerlink" href="#rois-svg" title="Permalink to this headline">¶</a></h2>
+<h2><code class="docutils literal notranslate"><span class="pre">rois.svg</span></code><a class="headerlink" href="#rois-svg" title="Link to this heading">¶</a></h2>
 </section>
 <section id="example-subject-database-entry">
-<h2>Example subject database entry<a class="headerlink" href="#example-subject-database-entry" title="Permalink to this headline">¶</a></h2>
+<h2>Example subject database entry<a class="headerlink" href="#example-subject-database-entry" title="Link to this heading">¶</a></h2>
 <p>Here is an example entry into the filestore…</p>
 <div class="highlight-shell notranslate"><div class="highlight"><pre><span></span>filestore/db
-└── S1
-    ├── anatomicals
-    │   └── raw.nii.gz
-    ├── cache
-    │   ├── flatmask_1024.npz
-    │   ├── flatpixel_fullhead_1024_nearest_l32.npz
-    │   ├── flatverts_1024.npz
-    │   └── fullhead_linenn.npz
-    ├── overlays.svg
-    ├── rois.svg
-    ├── surface-info
-    │   ├── distortion<span class="o">[</span><span class="nv">dist_type</span><span class="o">=</span>areal<span class="o">]</span>.npz
-    │   └── distortion<span class="o">[</span><span class="nv">dist_type</span><span class="o">=</span>metric<span class="o">]</span>.npz
-    ├── surfaces
-    │   ├── flat_lh.gii
-    │   ├── flat_rh.gii
-    │   ├── inflated_lh.gii
-    │   ├── inflated_rh.gii
-    │   ├── pia_lh.gii
-    │   ├── pia_rh.gii
-    │   ├── wm_lh.gii
-    │   └── wm_rh.gii
-    ├── transforms
-    │   ├── fullhead
-    │   │   ├── matrices.xfm
-    │   │   └── reference.nii.gz
-    │   └── retinotopy
-    │       ├── matrices.xfm
-    │       └── reference.nii.gz
-    └── views
+└──<span class="w"> </span>S1
+<span class="w">    </span>├──<span class="w"> </span>anatomicals
+<span class="w">    </span>│<span class="w">   </span>└──<span class="w"> </span>raw.nii.gz
+<span class="w">    </span>├──<span class="w"> </span>cache
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>flatmask_1024.npz
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>flatpixel_fullhead_1024_nearest_l32.npz
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>flatverts_1024.npz
+<span class="w">    </span>│<span class="w">   </span>└──<span class="w"> </span>fullhead_linenn.npz
+<span class="w">    </span>├──<span class="w"> </span>overlays.svg
+<span class="w">    </span>├──<span class="w"> </span>rois.svg
+<span class="w">    </span>├──<span class="w"> </span>surface-info
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>distortion<span class="o">[</span><span class="nv">dist_type</span><span class="o">=</span>areal<span class="o">]</span>.npz
+<span class="w">    </span>│<span class="w">   </span>└──<span class="w"> </span>distortion<span class="o">[</span><span class="nv">dist_type</span><span class="o">=</span>metric<span class="o">]</span>.npz
+<span class="w">    </span>├──<span class="w"> </span>surfaces
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>flat_lh.gii
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>flat_rh.gii
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>inflated_lh.gii
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>inflated_rh.gii
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>pia_lh.gii
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>pia_rh.gii
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>wm_lh.gii
+<span class="w">    </span>│<span class="w">   </span>└──<span class="w"> </span>wm_rh.gii
+<span class="w">    </span>├──<span class="w"> </span>transforms
+<span class="w">    </span>│<span class="w">   </span>├──<span class="w"> </span>fullhead
+<span class="w">    </span>│<span class="w">   </span>│<span class="w">   </span>├──<span class="w"> </span>matrices.xfm
+<span class="w">    </span>│<span class="w">   </span>│<span class="w">   </span>└──<span class="w"> </span>reference.nii.gz
+<span class="w">    </span>│<span class="w">   </span>└──<span class="w"> </span>retinotopy
+<span class="w">    </span>│<span class="w">       </span>├──<span class="w"> </span>matrices.xfm
+<span class="w">    </span>│<span class="w">       </span>└──<span class="w"> </span>reference.nii.gz
+<span class="w">    </span>└──<span class="w"> </span>views
 </pre></div>
 </div>
 </section>
@@ -300,7 +299,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -308,8 +307,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -323,11 +322,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/database.rst.txt"
diff --git a/dataset.html b/dataset.html
index 230798271..75689016e 100644
--- a/dataset.html
+++ b/dataset.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Pycortex Data Structures &#8212; pycortex 1.2.4 documentation</title>
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-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
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-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <title>Pycortex Data Structures &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
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+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="pycortex-data-structures">
-<h1>Pycortex Data Structures<a class="headerlink" href="#pycortex-data-structures" title="Permalink to this headline">¶</a></h1>
+<h1>Pycortex Data Structures<a class="headerlink" href="#pycortex-data-structures" title="Link to this heading">¶</a></h1>
 <p>Pycortex implements a set of helper functions that help normalize and standard data formats. It also wraps h5py to provide a standard way to store your data in HDF format.</p>
 <section id="quickstart">
-<h2>Quickstart<a class="headerlink" href="#quickstart" title="Permalink to this headline">¶</a></h2>
+<h2>Quickstart<a class="headerlink" href="#quickstart" title="Link to this heading">¶</a></h2>
 <p><a class="reference internal" href="generated/cortex.dataset.Dataset.html#cortex.dataset.Dataset" title="cortex.dataset.Dataset"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dataset</span></code></a> objects can be defined implicitly using a tuple syntax:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
 <span class="n">cortex</span><span class="o">.</span><span class="n">webshow</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randn</span><span class="p">(</span><span class="mi">31</span><span class="p">,</span> <span class="mi">100</span><span class="p">,</span> <span class="mi">100</span><span class="p">),</span> <span class="s2">&quot;S1&quot;</span><span class="p">,</span> <span class="s2">&quot;fullhead&quot;</span><span class="p">))</span>
@@ -66,7 +65,7 @@ <h2>Quickstart<a class="headerlink" href="#quickstart" title="Permalink to this
 </div>
 </section>
 <section id="overview">
-<h2>Overview<a class="headerlink" href="#overview" title="Permalink to this headline">¶</a></h2>
+<h2>Overview<a class="headerlink" href="#overview" title="Link to this heading">¶</a></h2>
 <p>Pycortex’s main data structures consists of the <a class="reference internal" href="generated/cortex.dataset.Dataset.html#cortex.dataset.Dataset" title="cortex.dataset.Dataset"><code class="xref py py-class docutils literal notranslate"><span class="pre">Dataset</span></code></a>, and the Dataview classes <a class="reference internal" href="generated/cortex.dataset.Volume.html#cortex.dataset.Volume" title="cortex.dataset.Volume"><code class="xref py py-class docutils literal notranslate"><span class="pre">Volume</span></code></a>, <a class="reference internal" href="generated/cortex.dataset.Vertex.html#cortex.dataset.Vertex" title="cortex.dataset.Vertex"><code class="xref py py-class docutils literal notranslate"><span class="pre">Vertex</span></code></a>, <a class="reference internal" href="generated/cortex.dataset.VolumeRGB.html#cortex.dataset.VolumeRGB" title="cortex.dataset.VolumeRGB"><code class="xref py py-class docutils literal notranslate"><span class="pre">VolumeRGB</span></code></a>, <a class="reference internal" href="generated/cortex.dataset.VertexRGB.html#cortex.dataset.VertexRGB" title="cortex.dataset.VertexRGB"><code class="xref py py-class docutils literal notranslate"><span class="pre">VertexRGB</span></code></a>, <code class="xref py py-class docutils literal notranslate"><span class="pre">Volume2d</span></code>, <a class="reference internal" href="generated/cortex.dataset.Vertex2D.html#cortex.dataset.Vertex2D" title="cortex.dataset.Vertex2D"><code class="xref py py-class docutils literal notranslate"><span class="pre">Vertex2D</span></code></a>.</p>
 <blockquote>
 <div><ul class="simple">
@@ -79,7 +78,7 @@ <h2>Overview<a class="headerlink" href="#overview" title="Permalink to this head
 </div></blockquote>
 </section>
 <section id="dataviews">
-<h2>Dataviews<a class="headerlink" href="#dataviews" title="Permalink to this headline">¶</a></h2>
+<h2>Dataviews<a class="headerlink" href="#dataviews" title="Link to this heading">¶</a></h2>
 <p>Dataview is a parent class that is instantiated in the form of one of the following subclasses: <a class="reference internal" href="generated/cortex.dataset.Volume.html#cortex.dataset.Volume" title="cortex.dataset.Volume"><code class="xref py py-class docutils literal notranslate"><span class="pre">Volume</span></code></a>, <a class="reference internal" href="generated/cortex.dataset.Vertex.html#cortex.dataset.Vertex" title="cortex.dataset.Vertex"><code class="xref py py-class docutils literal notranslate"><span class="pre">Vertex</span></code></a>, <a class="reference internal" href="generated/cortex.dataset.VolumeRGB.html#cortex.dataset.VolumeRGB" title="cortex.dataset.VolumeRGB"><code class="xref py py-class docutils literal notranslate"><span class="pre">VolumeRGB</span></code></a>, <a class="reference internal" href="generated/cortex.dataset.VertexRGB.html#cortex.dataset.VertexRGB" title="cortex.dataset.VertexRGB"><code class="xref py py-class docutils literal notranslate"><span class="pre">VertexRGB</span></code></a>, <a class="reference internal" href="generated/cortex.dataset.Volume2D.html#cortex.dataset.Volume2D" title="cortex.dataset.Volume2D"><code class="xref py py-class docutils literal notranslate"><span class="pre">Volume2D</span></code></a>, <a class="reference internal" href="generated/cortex.dataset.Vertex2D.html#cortex.dataset.Vertex2D" title="cortex.dataset.Vertex2D"><code class="xref py py-class docutils literal notranslate"><span class="pre">Vertex2D</span></code></a>. All dataviews have the following additional kwargs:</p>
 <blockquote>
 <div><ul class="simple">
@@ -92,7 +91,7 @@ <h2>Dataviews<a class="headerlink" href="#dataviews" title="Permalink to this he
 </div></blockquote>
 <p>In all following examples, <strong>kwargs</strong> contains these options.</p>
 <section id="volume-and-vertex">
-<h3>Volume and Vertex<a class="headerlink" href="#volume-and-vertex" title="Permalink to this headline">¶</a></h3>
+<h3>Volume and Vertex<a class="headerlink" href="#volume-and-vertex" title="Link to this heading">¶</a></h3>
 <p>These are your basic data classes. They have the following call signatures:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">vol</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Volume</span><span class="p">(</span><span class="n">nparray</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
 <span class="n">vert</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Vertex</span><span class="p">(</span><span class="n">nparray</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
@@ -118,7 +117,7 @@ <h3>Volume and Vertex<a class="headerlink" href="#volume-and-vertex" title="Perm
 <p>Volume and Vertex objects can also be implicitly defined using a tuple syntax, as highlighted in the quickstart above.</p>
 </section>
 <section id="rgb-data">
-<h3>RGB data<a class="headerlink" href="#rgb-data" title="Permalink to this headline">¶</a></h3>
+<h3>RGB data<a class="headerlink" href="#rgb-data" title="Link to this heading">¶</a></h3>
 <p>If you have data which does not require colormapping, it is possible to directly plot them using an RGB dataview. The calling signature looks like this:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">rgb</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">VolumeRGB</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">xfmname</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
 <span class="n">verts</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">VertexRGB</span><span class="p">(</span><span class="n">red</span><span class="p">,</span> <span class="n">green</span><span class="p">,</span> <span class="n">blue</span><span class="p">,</span> <span class="n">subject</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
@@ -128,7 +127,7 @@ <h3>RGB data<a class="headerlink" href="#rgb-data" title="Permalink to this head
 <p>If you provided either numpy arrays or <a class="reference internal" href="generated/cortex.dataset.Volume.html#cortex.dataset.Volume" title="cortex.dataset.Volume"><code class="xref py py-class docutils literal notranslate"><span class="pre">Volume</span></code></a> objects without vmin/vmax, the data will be normalized and cast to uint8 in order to display them. This means that the data will automatically be scaled between 0-255 and quantized. If your data is already normalized between 0 and 1, this will not occur.</p>
 </section>
 <section id="d-dataviews">
-<h3>2D dataviews<a class="headerlink" href="#d-dataviews" title="Permalink to this headline">¶</a></h3>
+<h3>2D dataviews<a class="headerlink" href="#d-dataviews" title="Link to this heading">¶</a></h3>
 <p>In order to specify 2D data views in webgl, this helper class lets you specify a pair of <a class="reference internal" href="generated/cortex.dataset.Volume.html#cortex.dataset.Volume" title="cortex.dataset.Volume"><code class="xref py py-class docutils literal notranslate"><span class="pre">Volume</span></code></a> objects to be plotted using a 2D colormap. Currently, quickflat does not yet support 2D colormaps. To declare a 2D dataview:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">dim1</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Volume</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
 <span class="n">dim2</span> <span class="o">=</span> <span class="n">cortex</span><span class="o">.</span><span class="n">Volume</span><span class="o">.</span><span class="n">random</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">xfmname</span><span class="p">)</span>
@@ -138,7 +137,7 @@ <h3>2D dataviews<a class="headerlink" href="#d-dataviews" title="Permalink to th
 </section>
 </section>
 <section id="dataset">
-<h2>Dataset<a class="headerlink" href="#dataset" title="Permalink to this headline">¶</a></h2>
+<h2>Dataset<a class="headerlink" href="#dataset" title="Link to this heading">¶</a></h2>
 <p>Dataset objects hold a dictionary of DataView objects. Its main function is saving out data into a standardized HDF format. Datasets also allow subject data packing, if you desire to send data to someone without the subject database.</p>
 <p>In addition, Datasets provide data deduplication. This is especially important for the webgl views, in order to reduce the amount of data transfer between server and client. Deduplication is accomplished using a SHA1 hash of the raw numpy data. This is not a foolproof method, but given the constraints of visualizing volumetric data, additional Numpy attributes do not need to be included in the hash.</p>
 <p>To save data:</p>
@@ -232,7 +231,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -240,8 +239,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -255,11 +254,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/dataset.rst.txt"
diff --git a/generated/Database/cortex.database.Database.__init__.html b/generated/Database/cortex.database.Database.__init__.html
index 267f77988..b1f7ee207 100644
--- a/generated/Database/cortex.database.Database.__init__.html
+++ b/generated/Database/cortex.database.Database.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
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-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-init">
-<h1>cortex.database.Database.__init__<a class="headerlink" href="#cortex-database-database-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.__init__<a class="headerlink" href="#cortex-database-database-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.__init__">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filestore</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/home/runner/work/pycortex/pycortex/cortex/../filestore/db'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filestore</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/home/runner/work/pycortex/pycortex/cortex/../filestore/db'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.__init__.rst.txt"
diff --git a/generated/Database/cortex.database.Database.clear_cache.html b/generated/Database/cortex.database.Database.clear_cache.html
index b04c2fd5e..8ebcdf09c 100644
--- a/generated/Database/cortex.database.Database.clear_cache.html
+++ b/generated/Database/cortex.database.Database.clear_cache.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.clear_cache &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.clear_cache &#8212; pycortex 1.2.8 documentation</title>
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-clear-cache">
-<h1>cortex.database.Database.clear_cache<a class="headerlink" href="#cortex-database-database-clear-cache" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.clear_cache<a class="headerlink" href="#cortex-database-database-clear-cache" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.clear_cache">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">clear_cache</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">clear_all_caches</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.clear_cache"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.clear_cache" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">clear_cache</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">clear_all_caches</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.clear_cache"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.clear_cache" title="Link to this definition">¶</a></dt>
 <dd><p>Clears config-specified and default file caches for a subject.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.clear_cache.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_anat.html b/generated/Database/cortex.database.Database.get_anat.html
index f65cf9a94..defb79ca5 100644
--- a/generated/Database/cortex.database.Database.get_anat.html
+++ b/generated/Database/cortex.database.Database.get_anat.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_anat &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_anat &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-anat">
-<h1>cortex.database.Database.get_anat<a class="headerlink" href="#cortex-database-database-get-anat" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_anat<a class="headerlink" href="#cortex-database-database-get-anat" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_anat">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_anat</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'raw'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_anat"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_anat" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_anat</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'raw'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_anat"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_anat" title="Link to this definition">¶</a></dt>
 <dd><p>Return anatomical information from the filestore. Anatomical information is defined as
 any volume-space anatomical information pertaining to the subject, such as T1 image,
 white matter masks, etc. Volumes not found in the database will be automatically generated.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject</p>
 </dd>
@@ -54,7 +53,7 @@ <h1>cortex.database.Database.get_anat<a class="headerlink" href="#cortex-databas
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>volume</strong><span class="classifier">nibabel object</span></dt><dd><p>Volume containing</p>
 </dd>
@@ -112,7 +111,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -120,8 +119,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -135,11 +134,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_anat.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_cache.html b/generated/Database/cortex.database.Database.get_cache.html
index 9e65bea63..ab6b2ac78 100644
--- a/generated/Database/cortex.database.Database.get_cache.html
+++ b/generated/Database/cortex.database.Database.get_cache.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_cache &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_cache &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-cache">
-<h1>cortex.database.Database.get_cache<a class="headerlink" href="#cortex-database-database-get-cache" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_cache<a class="headerlink" href="#cortex-database-database-get-cache" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_cache">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_cache</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_cache"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_cache" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_cache</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_cache"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_cache" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_cache.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_coords.html b/generated/Database/cortex.database.Database.get_coords.html
index fb48481cd..b99a10595 100644
--- a/generated/Database/cortex.database.Database.get_coords.html
+++ b/generated/Database/cortex.database.Database.get_coords.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_coords &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_coords &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-coords">
-<h1>cortex.database.Database.get_coords<a class="headerlink" href="#cortex-database-database-get-coords" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_coords<a class="headerlink" href="#cortex-database-database-get-coords" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_coords">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_coords</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemisphere</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">magnet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_coords"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_coords" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_coords</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemisphere</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">magnet</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_coords"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_coords" title="Link to this definition">¶</a></dt>
 <dd><p>Calculate the coordinates of each vertex in the epi space by transforming the fiducial to the coordinate space</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject</p>
 </dd>
@@ -104,7 +103,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -112,8 +111,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -127,11 +126,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_coords.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_mask.html b/generated/Database/cortex.database.Database.get_mask.html
index d5640509c..124ca058e 100644
--- a/generated/Database/cortex.database.Database.get_mask.html
+++ b/generated/Database/cortex.database.Database.get_mask.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_mask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_mask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-mask">
-<h1>cortex.database.Database.get_mask<a class="headerlink" href="#cortex-database-database-get-mask" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_mask<a class="headerlink" href="#cortex-database-database-get-mask" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_mask">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'thick'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_mask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'thick'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_mask" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_mask.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_mnixfm.html b/generated/Database/cortex.database.Database.get_mnixfm.html
index a917a996b..dfe265f99 100644
--- a/generated/Database/cortex.database.Database.get_mnixfm.html
+++ b/generated/Database/cortex.database.Database.get_mnixfm.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_mnixfm &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_mnixfm &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-mnixfm">
-<h1>cortex.database.Database.get_mnixfm<a class="headerlink" href="#cortex-database-database-get-mnixfm" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_mnixfm<a class="headerlink" href="#cortex-database-database-get-mnixfm" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_mnixfm">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_mnixfm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_mnixfm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_mnixfm" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_mnixfm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_mnixfm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_mnixfm" title="Link to this definition">¶</a></dt>
 <dd><p>Get transform from the space specified by <cite>xfm</cite> to MNI space.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier</p>
 </dd>
@@ -52,7 +51,7 @@ <h1>cortex.database.Database.get_mnixfm<a class="headerlink" href="#cortex-datab
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>mnixfm</strong><span class="classifier">numpy.ndarray</span></dt><dd><p>Transformation matrix from the space specified by <cite>xfm</cite> to MNI space.</p>
 </dd>
@@ -121,7 +120,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -129,8 +128,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -144,11 +143,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_mnixfm.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_mri_surf2surf_matrix.html b/generated/Database/cortex.database.Database.get_mri_surf2surf_matrix.html
index 4488c145c..b7ab2664e 100644
--- a/generated/Database/cortex.database.Database.get_mri_surf2surf_matrix.html
+++ b/generated/Database/cortex.database.Database.get_mri_surf2surf_matrix.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_mri_surf2surf_matrix &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_mri_surf2surf_matrix &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-mri-surf2surf-matrix">
-<h1>cortex.database.Database.get_mri_surf2surf_matrix<a class="headerlink" href="#cortex-database-database-get-mri-surf2surf-matrix" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_mri_surf2surf_matrix<a class="headerlink" href="#cortex-database-database-get-mri-surf2surf-matrix" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_mri_surf2surf_matrix">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_mri_surf2surf_matrix</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surface_type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fs_subj</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_subj</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'fsaverage'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_mri_surf2surf_matrix"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_mri_surf2surf_matrix" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_mri_surf2surf_matrix</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surface_type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fs_subj</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target_subj</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'fsaverage'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_mri_surf2surf_matrix"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_mri_surf2surf_matrix" title="Link to this definition">¶</a></dt>
 <dd><p>Get matrix generated by surf2surf to map one subject’s surface to another’s</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">pycortex</span></dt><dd><p>pycortex subject ID</p>
 </dd>
@@ -59,7 +58,7 @@ <h1>cortex.database.Database.get_mri_surf2surf_matrix<a class="headerlink" href=
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Other Parameters</dt>
+<dt class="field-even">Other Parameters<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>subjects_dir</strong><span class="classifier">str</span></dt><dd><p>Custom path to freesurfer subjects dir can be specified in the 
 keyword args</p>
@@ -128,7 +127,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -136,8 +135,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -151,11 +150,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_mri_surf2surf_matrix.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_overlay.html b/generated/Database/cortex.database.Database.get_overlay.html
index f902cc5fa..dfec9b360 100644
--- a/generated/Database/cortex.database.Database.get_overlay.html
+++ b/generated/Database/cortex.database.Database.get_overlay.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_overlay &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_overlay &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-overlay">
-<h1>cortex.database.Database.get_overlay<a class="headerlink" href="#cortex-database-database-get-overlay" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_overlay<a class="headerlink" href="#cortex-database-database-get-overlay" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_overlay">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_overlay</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_overlay"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_overlay" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_overlay</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_overlay"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_overlay" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_overlay.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_paths.html b/generated/Database/cortex.database.Database.get_paths.html
index 41e55c324..e4d932611 100644
--- a/generated/Database/cortex.database.Database.get_paths.html
+++ b/generated/Database/cortex.database.Database.get_paths.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_paths &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_paths &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-paths">
-<h1>cortex.database.Database.get_paths<a class="headerlink" href="#cortex-database-database-get-paths" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_paths<a class="headerlink" href="#cortex-database-database-get-paths" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_paths">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_paths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_paths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_paths" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_paths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_paths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_paths" title="Link to this definition">¶</a></dt>
 <dd><p>Get a dictionary with a list of all candidate filenames for associated data, such as roi overlays, flatmap caches, and ctm caches.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_paths.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_shared_voxels.html b/generated/Database/cortex.database.Database.get_shared_voxels.html
index 575e6ff9c..cf4368f7a 100644
--- a/generated/Database/cortex.database.Database.get_shared_voxels.html
+++ b/generated/Database/cortex.database.Database.get_shared_voxels.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_shared_voxels &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_shared_voxels &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-shared-voxels">
-<h1>cortex.database.Database.get_shared_voxels<a class="headerlink" href="#cortex-database-database-get-shared-voxels" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_shared_voxels<a class="headerlink" href="#cortex-database-database-get-shared-voxels" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_shared_voxels">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_shared_voxels</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">merge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_astar</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_shared_voxels"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_shared_voxels" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_shared_voxels</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">merge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_astar</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_shared_voxels"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_shared_voxels" title="Link to this definition">¶</a></dt>
 <dd><p>Get an array indicating which vertices are inappropriately mapped to the same voxel.</p>
 <p>For a given transform and surface, returns an array containing a list of vertices which 
 are spatially distant on the cortical surface but that map to the same voxels (this occurs
@@ -95,7 +94,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -103,8 +102,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -118,11 +117,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_shared_voxels.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_surf.html b/generated/Database/cortex.database.Database.get_surf.html
index ecc0396fe..fcce5f405 100644
--- a/generated/Database/cortex.database.Database.get_surf.html
+++ b/generated/Database/cortex.database.Database.get_surf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_surf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_surf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-surf">
-<h1>cortex.database.Database.get_surf<a class="headerlink" href="#cortex-database-database-get-surf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_surf<a class="headerlink" href="#cortex-database-database-get-surf" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_surf">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemisphere</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">merge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nudge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_surf" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemisphere</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">merge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nudge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_surf" title="Link to this definition">¶</a></dt>
 <dd><p>Return the surface pair for the given subject, surface type, and hemisphere.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject</p>
 </dd>
@@ -58,9 +57,9 @@ <h1>cortex.database.Database.get_surf<a class="headerlink" href="#cortex-databas
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
-<dt><strong>left, right</strong><span class="classifier"></span></dt><dd><p>If request is for both hemispheres, otherwise:</p>
+<dt>left, right</dt><dd><p>If request is for both hemispheres, otherwise:</p>
 </dd>
 <dt><strong>pts, polys, norms</strong><span class="classifier">((p,3) array, (f,3) array, (p,3) array or None)</span></dt><dd><p>For single hemisphere</p>
 </dd>
@@ -118,7 +117,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -126,8 +125,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -141,11 +140,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_surf.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_surfinfo.html b/generated/Database/cortex.database.Database.get_surfinfo.html
index 3793f8ba5..c1dc0dc3d 100644
--- a/generated/Database/cortex.database.Database.get_surfinfo.html
+++ b/generated/Database/cortex.database.Database.get_surfinfo.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_surfinfo &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_surfinfo &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-surfinfo">
-<h1>cortex.database.Database.get_surfinfo<a class="headerlink" href="#cortex-database-database-get-surfinfo" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_surfinfo<a class="headerlink" href="#cortex-database-database-get-surfinfo" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_surfinfo">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_surfinfo</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'curvature'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_surfinfo"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_surfinfo" title="Permalink to this definition">¶</a></dt>
-<dd><p>Return auxillary surface information from the filestore. Surface info is defined as 
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_surfinfo</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'curvature'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_surfinfo"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_surfinfo" title="Link to this definition">¶</a></dt>
+<dd><p>Return auxiliary surface information from the filestore. Surface info is defined as 
 anatomical information specific to a subject in surface space. A Vertex class will be returned
 as necessary. Info not found in the filestore will be automatically generated.</p>
 <p>See documentation in cortex.surfinfo for auto-generation code</p>
 <dl class="field-list">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject: str</strong></dt><dd><p>Subject name for which to return info</p>
 </dd>
@@ -55,7 +54,7 @@ <h1>cortex.database.Database.get_surfinfo<a class="headerlink" href="#cortex-dat
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>verts</strong><span class="classifier">Vertex class</span></dt><dd><p>If the surface information has “left” and “right” entries, a Vertex class is returned</p>
 </dd>
@@ -123,7 +122,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -131,8 +130,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -146,11 +145,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_surfinfo.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_view.html b/generated/Database/cortex.database.Database.get_view.html
index 3990aa4b0..9c238a530 100644
--- a/generated/Database/cortex.database.Database.get_view.html
+++ b/generated/Database/cortex.database.Database.get_view.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_view &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_view &#8212; pycortex 1.2.8 documentation</title>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-view">
-<h1>cortex.database.Database.get_view<a class="headerlink" href="#cortex-database-database-get-view" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_view<a class="headerlink" href="#cortex-database-database-get-view" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_view">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_view</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vw</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_view"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_view" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_view</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vw</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_view"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_view" title="Link to this definition">¶</a></dt>
 <dd><p>Set the view for an open webshow instance from a saved view</p>
 <p>Sets the view in a currently-open cortex.webshow instance (with handle <cite>vw</cite>)
 to the saved view named <cite>name</cite></p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>vw</strong><span class="classifier">handle for cortex.webshow</span></dt><dd><p>Handle for open webshow session (returned by cortex.webshow)</p>
 </dd>
@@ -108,7 +107,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -116,8 +115,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -131,11 +130,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_view.rst.txt"
diff --git a/generated/Database/cortex.database.Database.get_xfm.html b/generated/Database/cortex.database.Database.get_xfm.html
index 933d1f675..a8aa3dd56 100644
--- a/generated/Database/cortex.database.Database.get_xfm.html
+++ b/generated/Database/cortex.database.Database.get_xfm.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.get_xfm &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.get_xfm &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-get-xfm">
-<h1>cortex.database.Database.get_xfm<a class="headerlink" href="#cortex-database-database-get-xfm" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.get_xfm<a class="headerlink" href="#cortex-database-database-get-xfm" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.get_xfm">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_xfm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmtype</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'coord'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_xfm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_xfm" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">get_xfm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmtype</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'coord'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.get_xfm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.get_xfm" title="Link to this definition">¶</a></dt>
 <dd><p>Retrieves a transform from the filestore</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject</p>
 </dd>
@@ -104,7 +103,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -112,8 +111,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -127,11 +126,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.get_xfm.rst.txt"
diff --git a/generated/Database/cortex.database.Database.make_subj.html b/generated/Database/cortex.database.Database.make_subj.html
index 119ba819e..7004904e6 100644
--- a/generated/Database/cortex.database.Database.make_subj.html
+++ b/generated/Database/cortex.database.Database.make_subj.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.make_subj &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.make_subj &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-make-subj">
-<h1>cortex.database.Database.make_subj<a class="headerlink" href="#cortex-database-database-make-subj" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.make_subj<a class="headerlink" href="#cortex-database-database-make-subj" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.make_subj">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">make_subj</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.make_subj"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.make_subj" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">make_subj</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.make_subj"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.make_subj" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.make_subj.rst.txt"
diff --git a/generated/Database/cortex.database.Database.reload_subjects.html b/generated/Database/cortex.database.Database.reload_subjects.html
index 08f09893d..93f13fe74 100644
--- a/generated/Database/cortex.database.Database.reload_subjects.html
+++ b/generated/Database/cortex.database.Database.reload_subjects.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.reload_subjects &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.reload_subjects &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-reload-subjects">
-<h1>cortex.database.Database.reload_subjects<a class="headerlink" href="#cortex-database-database-reload-subjects" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.reload_subjects<a class="headerlink" href="#cortex-database-database-reload-subjects" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.reload_subjects">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">reload_subjects</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.reload_subjects"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.reload_subjects" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">reload_subjects</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.reload_subjects"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.reload_subjects" title="Link to this definition">¶</a></dt>
 <dd><p>Force the reload of the subject dictionary.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.reload_subjects.rst.txt"
diff --git a/generated/Database/cortex.database.Database.save_mask.html b/generated/Database/cortex.database.Database.save_mask.html
index 19f4513e0..3aacfd8d4 100644
--- a/generated/Database/cortex.database.Database.save_mask.html
+++ b/generated/Database/cortex.database.Database.save_mask.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.save_mask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.save_mask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-save-mask">
-<h1>cortex.database.Database.save_mask<a class="headerlink" href="#cortex-database-database-save-mask" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.save_mask<a class="headerlink" href="#cortex-database-database-save-mask" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.save_mask">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">save_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.save_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.save_mask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">save_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.save_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.save_mask" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.save_mask.rst.txt"
diff --git a/generated/Database/cortex.database.Database.save_view.html b/generated/Database/cortex.database.Database.save_view.html
index 62f6dc3da..2facdcceb 100644
--- a/generated/Database/cortex.database.Database.save_view.html
+++ b/generated/Database/cortex.database.Database.save_view.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.save_view &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.save_view &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-save-view">
-<h1>cortex.database.Database.save_view<a class="headerlink" href="#cortex-database-database-save-view" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.save_view<a class="headerlink" href="#cortex-database-database-save-view" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.save_view">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">save_view</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vw</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">is_overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.save_view"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.save_view" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">save_view</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vw</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">is_overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.save_view"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.save_view" title="Link to this definition">¶</a></dt>
 <dd><p>Set the view for an open webshow instance from a saved view</p>
 <p>Sets the view in a currently-open cortex.webshow instance (with handle <cite>vw</cite>)
 to the saved view named <cite>name</cite></p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>vw</strong><span class="classifier">handle for pycortex webgl viewer</span></dt><dd><p>Handle for open webgl session (returned by cortex.webshow)</p>
 </dd>
@@ -109,7 +108,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -117,8 +116,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -132,11 +131,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.save_view.rst.txt"
diff --git a/generated/Database/cortex.database.Database.save_xfm.html b/generated/Database/cortex.database.Database.save_xfm.html
index 1cbe1be5c..edc1708df 100644
--- a/generated/Database/cortex.database.Database.save_xfm.html
+++ b/generated/Database/cortex.database.Database.save_xfm.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.save_xfm &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.save_xfm &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-save-xfm">
-<h1>cortex.database.Database.save_xfm<a class="headerlink" href="#cortex-database-database-save-xfm" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.save_xfm<a class="headerlink" href="#cortex-database-database-save-xfm" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.database.Database.save_xfm">
-<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">save_xfm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmtype</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'magnet'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.save_xfm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.save_xfm" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">save_xfm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmtype</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'magnet'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/database.html#Database.save_xfm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database.save_xfm" title="Link to this definition">¶</a></dt>
 <dd><p>Load a transform into the surface database. If the transform exists already, update it
 If it does not exist, copy the reference epi into the filestore and insert.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject</p>
 </dd>
@@ -111,7 +110,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -119,8 +118,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -134,11 +133,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.save_xfm.rst.txt"
diff --git a/generated/Database/cortex.database.Database.subjects.html b/generated/Database/cortex.database.Database.subjects.html
index b2d4f17e0..6f19aa51a 100644
--- a/generated/Database/cortex.database.Database.subjects.html
+++ b/generated/Database/cortex.database.Database.subjects.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database.subjects &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database.subjects &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
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+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database-subjects">
-<h1>cortex.database.Database.subjects<a class="headerlink" href="#cortex-database-database-subjects" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database.subjects<a class="headerlink" href="#cortex-database-database-subjects" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.database.Database.subjects">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">subjects</span></span><a class="headerlink" href="#cortex.database.Database.subjects" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Database.</span></span><span class="sig-name descname"><span class="pre">subjects</span></span><a class="headerlink" href="#cortex.database.Database.subjects" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Database/cortex.database.Database.subjects.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.__init__.html b/generated/Dataset/cortex.dataset.Dataset.__init__.html
index d10e51760..1272316a7 100644
--- a/generated/Dataset/cortex.dataset.Dataset.__init__.html
+++ b/generated/Dataset/cortex.dataset.Dataset.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-init">
-<h1>cortex.dataset.Dataset.__init__<a class="headerlink" href="#cortex-dataset-dataset-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.__init__<a class="headerlink" href="#cortex-dataset-dataset-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.__init__">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.__init__.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.append.html b/generated/Dataset/cortex.dataset.Dataset.append.html
index ae613513c..b27204216 100644
--- a/generated/Dataset/cortex.dataset.Dataset.append.html
+++ b/generated/Dataset/cortex.dataset.Dataset.append.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.append &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.append &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-append">
-<h1>cortex.dataset.Dataset.append<a class="headerlink" href="#cortex-dataset-dataset-append" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.append<a class="headerlink" href="#cortex-dataset-dataset-append" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.append">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">append</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.append"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.append" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">append</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.append"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.append" title="Link to this definition">¶</a></dt>
 <dd><p>Add the <cite>BrainData</cite> or <cite>Dataset</cite> objects in <cite>kwargs</cite> into this 
 dataset.</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.append.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.from_file.html b/generated/Dataset/cortex.dataset.Dataset.from_file.html
index e3698966b..2a1ff6f2d 100644
--- a/generated/Dataset/cortex.dataset.Dataset.from_file.html
+++ b/generated/Dataset/cortex.dataset.Dataset.from_file.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.from_file &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.from_file &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,11 +35,31 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-from-file">
-<h1>cortex.dataset.Dataset.from_file<a class="headerlink" href="#cortex-dataset-dataset-from-file" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.from_file<a class="headerlink" href="#cortex-dataset-dataset-from-file" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.from_file">
-<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">from_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.from_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.from_file" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">from_file</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.from_file"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.from_file" title="Link to this definition">¶</a></dt>
+<dd><p>Load a pycortex Dataset (cortex.Dataset class) from a file</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><dl class="simple">
+<dt><strong>filename</strong><span class="classifier">str</span></dt><dd><p>.hdf file from which to load</p>
+</dd>
+<dt><strong>subject</strong><span class="classifier">str, optional</span></dt><dd><p>string ID for pycortex subject, if subject name has changed
+since the Dataset was created. <cite>None</cite> input assumes subject 
+name in saved file is a subject in your current pycortex
+filestore. By default None</p>
+</dd>
+</dl>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
+<dd class="field-even"><dl class="simple">
+<dt>Dataset</dt><dd><p>pycortex Dataset</p>
+</dd>
+</dl>
+</dd>
+</dl>
+</dd></dl>
 
 </section>
 
@@ -91,7 +110,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +118,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +133,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.from_file.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.get_mask.html b/generated/Dataset/cortex.dataset.Dataset.get_mask.html
index 82795e4e9..37bcb46ac 100644
--- a/generated/Dataset/cortex.dataset.Dataset.get_mask.html
+++ b/generated/Dataset/cortex.dataset.Dataset.get_mask.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.get_mask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.get_mask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-get-mask">
-<h1>cortex.dataset.Dataset.get_mask<a class="headerlink" href="#cortex-dataset-dataset-get-mask" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.get_mask<a class="headerlink" href="#cortex-dataset-dataset-get-mask" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.get_mask">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">get_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">maskname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.get_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.get_mask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">get_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">maskname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.get_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.get_mask" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.get_mask.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.get_overlay.html b/generated/Dataset/cortex.dataset.Dataset.get_overlay.html
index 8f7e9ae13..a4fb1e7ed 100644
--- a/generated/Dataset/cortex.dataset.Dataset.get_overlay.html
+++ b/generated/Dataset/cortex.dataset.Dataset.get_overlay.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.get_overlay &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.get_overlay &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-get-overlay">
-<h1>cortex.dataset.Dataset.get_overlay<a class="headerlink" href="#cortex-dataset-dataset-get-overlay" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.get_overlay<a class="headerlink" href="#cortex-dataset-dataset-get-overlay" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.get_overlay">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">get_overlay</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'rois'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.get_overlay"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.get_overlay" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">get_overlay</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'rois'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.get_overlay"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.get_overlay" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.get_overlay.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.get_surf.html b/generated/Dataset/cortex.dataset.Dataset.get_surf.html
index 098791496..49e5a7ad8 100644
--- a/generated/Dataset/cortex.dataset.Dataset.get_surf.html
+++ b/generated/Dataset/cortex.dataset.Dataset.get_surf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.get_surf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.get_surf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-get-surf">
-<h1>cortex.dataset.Dataset.get_surf<a class="headerlink" href="#cortex-dataset-dataset-get-surf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.get_surf<a class="headerlink" href="#cortex-dataset-dataset-get-surf" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.get_surf">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">get_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">merge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nudge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.get_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.get_surf" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">get_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">merge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nudge</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.get_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.get_surf" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.get_surf.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.get_xfm.html b/generated/Dataset/cortex.dataset.Dataset.get_xfm.html
index 0281f4144..231691786 100644
--- a/generated/Dataset/cortex.dataset.Dataset.get_xfm.html
+++ b/generated/Dataset/cortex.dataset.Dataset.get_xfm.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.get_xfm &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.get_xfm &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-get-xfm">
-<h1>cortex.dataset.Dataset.get_xfm<a class="headerlink" href="#cortex-dataset-dataset-get-xfm" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.get_xfm<a class="headerlink" href="#cortex-dataset-dataset-get-xfm" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.get_xfm">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">get_xfm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.get_xfm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.get_xfm" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">get_xfm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.get_xfm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.get_xfm" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.get_xfm.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.prepend.html b/generated/Dataset/cortex.dataset.Dataset.prepend.html
index 1cb7892b5..038b851c6 100644
--- a/generated/Dataset/cortex.dataset.Dataset.prepend.html
+++ b/generated/Dataset/cortex.dataset.Dataset.prepend.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.prepend &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.prepend &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-prepend">
-<h1>cortex.dataset.Dataset.prepend<a class="headerlink" href="#cortex-dataset-dataset-prepend" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.prepend<a class="headerlink" href="#cortex-dataset-dataset-prepend" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.prepend">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">prepend</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">prefix</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.prepend"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.prepend" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">prepend</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">prefix</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.prepend"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.prepend" title="Link to this definition">¶</a></dt>
 <dd><p>Adds the given <cite>prefix</cite> to the name of every data object and returns
 a new Dataset.</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.prepend.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.save.html b/generated/Dataset/cortex.dataset.Dataset.save.html
index dcefd222e..54dd9aab1 100644
--- a/generated/Dataset/cortex.dataset.Dataset.save.html
+++ b/generated/Dataset/cortex.dataset.Dataset.save.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.save &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.save &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-save">
-<h1>cortex.dataset.Dataset.save<a class="headerlink" href="#cortex-dataset-dataset-save" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.save<a class="headerlink" href="#cortex-dataset-dataset-save" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.save">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">save</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pack</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.save"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.save" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">save</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pack</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.save"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.save" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.save.rst.txt"
diff --git a/generated/Dataset/cortex.dataset.Dataset.uniques.html b/generated/Dataset/cortex.dataset.Dataset.uniques.html
index f696b4f71..12a4fc7bf 100644
--- a/generated/Dataset/cortex.dataset.Dataset.uniques.html
+++ b/generated/Dataset/cortex.dataset.Dataset.uniques.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset.uniques &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset.uniques &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset-uniques">
-<h1>cortex.dataset.Dataset.uniques<a class="headerlink" href="#cortex-dataset-dataset-uniques" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset.uniques<a class="headerlink" href="#cortex-dataset-dataset-uniques" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset.uniques">
-<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.uniques"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.uniques" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Dataset.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/dataset.html#Dataset.uniques"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset.uniques" title="Link to this definition">¶</a></dt>
 <dd><p>Return the set of unique BrainData objects contained by this dataset</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
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+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Dataset/cortex.dataset.Dataset.uniques.rst.txt"
diff --git a/generated/Distortion/cortex.polyutils.Distortion.__init__.html b/generated/Distortion/cortex.polyutils.Distortion.__init__.html
index 6b4740ed3..44459fbf8 100644
--- a/generated/Distortion/cortex.polyutils.Distortion.__init__.html
+++ b/generated/Distortion/cortex.polyutils.Distortion.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-distortion-init">
-<h1>cortex.polyutils.Distortion.__init__<a class="headerlink" href="#cortex-polyutils-distortion-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Distortion.__init__<a class="headerlink" href="#cortex-polyutils-distortion-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Distortion.__init__">
-<span class="sig-prename descclassname"><span class="pre">Distortion.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">flat</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ref</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/distortion.html#Distortion.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Distortion.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Distortion.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">flat</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ref</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/distortion.html#Distortion.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Distortion.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Distortion/cortex.polyutils.Distortion.__init__.rst.txt"
diff --git a/generated/Distortion/cortex.polyutils.Distortion.areal.html b/generated/Distortion/cortex.polyutils.Distortion.areal.html
index 011cbee8d..3ff4c3b1f 100644
--- a/generated/Distortion/cortex.polyutils.Distortion.areal.html
+++ b/generated/Distortion/cortex.polyutils.Distortion.areal.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Distortion.areal &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Distortion.areal &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-distortion-areal">
-<h1>cortex.polyutils.Distortion.areal<a class="headerlink" href="#cortex-polyutils-distortion-areal" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Distortion.areal<a class="headerlink" href="#cortex-polyutils-distortion-areal" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Distortion.areal">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Distortion.</span></span><span class="sig-name descname"><span class="pre">areal</span></span><a class="headerlink" href="#cortex.polyutils.Distortion.areal" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Distortion.</span></span><span class="sig-name descname"><span class="pre">areal</span></span><a class="headerlink" href="#cortex.polyutils.Distortion.areal" title="Link to this definition">¶</a></dt>
 <dd><p>Compute areal distortion of the flatmap.</p>
 <p>Areal distortion is calculated at each triangle as the log2 ratio of
 the triangle area in the flatmap to the area in the reference surface.
@@ -51,7 +50,7 @@ <h1>cortex.polyutils.Distortion.areal<a class="headerlink" href="#cortex-polyuti
 surface (compression).</p>
 <p>See: <a class="reference external" href="http://brainvis.wustl.edu/wiki/index.php/Caret:Operations/Morphing">http://brainvis.wustl.edu/wiki/index.php/Caret:Operations/Morphing</a></p>
 <dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>vertratios</strong><span class="classifier">1D ndarray, shape (total_verts,)</span></dt><dd><p>Areal distortion at each vertex.</p>
 </dd>
@@ -109,7 +108,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -117,8 +116,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -132,11 +131,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Distortion/cortex.polyutils.Distortion.areal.rst.txt"
diff --git a/generated/Distortion/cortex.polyutils.Distortion.metric.html b/generated/Distortion/cortex.polyutils.Distortion.metric.html
index addbba7b1..d0a20ca20 100644
--- a/generated/Distortion/cortex.polyutils.Distortion.metric.html
+++ b/generated/Distortion/cortex.polyutils.Distortion.metric.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Distortion.metric &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Distortion.metric &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-distortion-metric">
-<h1>cortex.polyutils.Distortion.metric<a class="headerlink" href="#cortex-polyutils-distortion-metric" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Distortion.metric<a class="headerlink" href="#cortex-polyutils-distortion-metric" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Distortion.metric">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Distortion.</span></span><span class="sig-name descname"><span class="pre">metric</span></span><a class="headerlink" href="#cortex.polyutils.Distortion.metric" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Distortion.</span></span><span class="sig-name descname"><span class="pre">metric</span></span><a class="headerlink" href="#cortex.polyutils.Distortion.metric" title="Link to this definition">¶</a></dt>
 <dd><p>Compute metric distortion of the flatmap.</p>
 <p>Metric distortion is calculated as the difference in squared distance
 from each vertex to its neighbors between the flatmap and the reference.</p>
@@ -48,7 +47,7 @@ <h1>cortex.polyutils.Distortion.metric<a class="headerlink" href="#cortex-polyut
 etc.</p>
 <p>See: Fishl, Sereno, and Dale, 1999.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>vertdists</strong><span class="classifier">1D ndarray, shape (total_verts,)</span></dt><dd><p>Metric distortion at each vertex.</p>
 </dd>
@@ -106,7 +105,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -114,8 +113,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -129,11 +128,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Distortion/cortex.polyutils.Distortion.metric.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.__init__.html b/generated/Surface/cortex.polyutils.Surface.__init__.html
index 26bc4b13d..511df0be1 100644
--- a/generated/Surface/cortex.polyutils.Surface.__init__.html
+++ b/generated/Surface/cortex.polyutils.Surface.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-init">
-<h1>cortex.polyutils.Surface.__init__<a class="headerlink" href="#cortex-polyutils-surface-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.__init__<a class="headerlink" href="#cortex-polyutils-surface-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.__init__">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.__init__.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.adj.html b/generated/Surface/cortex.polyutils.Surface.adj.html
index fc1d9913c..338223feb 100644
--- a/generated/Surface/cortex.polyutils.Surface.adj.html
+++ b/generated/Surface/cortex.polyutils.Surface.adj.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.adj &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.adj &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-adj">
-<h1>cortex.polyutils.Surface.adj<a class="headerlink" href="#cortex-polyutils-surface-adj" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.adj<a class="headerlink" href="#cortex-polyutils-surface-adj" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.adj">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">adj</span></span><a class="headerlink" href="#cortex.polyutils.Surface.adj" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">adj</span></span><a class="headerlink" href="#cortex.polyutils.Surface.adj" title="Link to this definition">¶</a></dt>
 <dd><p>Sparse vertex adjacency matrix.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
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-</div>
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+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.adj.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.approx_geodesic_distance.html b/generated/Surface/cortex.polyutils.Surface.approx_geodesic_distance.html
index 9fa664dd7..fb8635c47 100644
--- a/generated/Surface/cortex.polyutils.Surface.approx_geodesic_distance.html
+++ b/generated/Surface/cortex.polyutils.Surface.approx_geodesic_distance.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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-    <title>cortex.polyutils.Surface.approx_geodesic_distance &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.approx_geodesic_distance &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-approx-geodesic-distance">
-<h1>cortex.polyutils.Surface.approx_geodesic_distance<a class="headerlink" href="#cortex-polyutils-surface-approx-geodesic-distance" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.approx_geodesic_distance<a class="headerlink" href="#cortex-polyutils-surface-approx-geodesic-distance" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.approx_geodesic_distance">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">approx_geodesic_distance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">m</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.approx_geodesic_distance"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.approx_geodesic_distance" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">approx_geodesic_distance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">m</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.approx_geodesic_distance"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.approx_geodesic_distance" title="Link to this definition">¶</a></dt>
 <dd><p>Computes approximate geodesic distance (in mm) from each vertex in 
 the surface to any vertex in the collection <cite>verts</cite>. This approximation
 is computed using Varadhan’s formula for geodesic distance based on the
@@ -51,7 +50,7 @@ <h1>cortex.polyutils.Surface.approx_geodesic_distance<a class="headerlink" href=
 be very accurate as the duration of heat diffusion goes to zero. In 
 practice, short duration leads to numerical instability and error.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>verts</strong><span class="classifier">1D array-like of ints</span></dt><dd><p>Set of vertices to compute distance from. This function returns the shortest
 distance to any of these vertices from every vertex in the surface.</p>
@@ -60,7 +59,7 @@ <h1>cortex.polyutils.Surface.approx_geodesic_distance<a class="headerlink" href=
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>1D ndarray, shape (total_verts,)</dt><dd><p>Approximate geodesic distance (in mm) from each vertex in the 
 surface to the closest vertex in <cite>verts</cite>.</p>
@@ -119,7 +118,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -127,8 +126,8 @@ <h3 id="searchlabel">Quick search</h3>
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@@ -142,11 +141,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.approx_geodesic_distance.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.avg_edge_length.html b/generated/Surface/cortex.polyutils.Surface.avg_edge_length.html
index 5381a80c6..f1fd59919 100644
--- a/generated/Surface/cortex.polyutils.Surface.avg_edge_length.html
+++ b/generated/Surface/cortex.polyutils.Surface.avg_edge_length.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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-    <title>cortex.polyutils.Surface.avg_edge_length &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.avg_edge_length &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-avg-edge-length">
-<h1>cortex.polyutils.Surface.avg_edge_length<a class="headerlink" href="#cortex-polyutils-surface-avg-edge-length" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.avg_edge_length<a class="headerlink" href="#cortex-polyutils-surface-avg-edge-length" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.avg_edge_length">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">avg_edge_length</span></span><a class="headerlink" href="#cortex.polyutils.Surface.avg_edge_length" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">avg_edge_length</span></span><a class="headerlink" href="#cortex.polyutils.Surface.avg_edge_length" title="Link to this definition">¶</a></dt>
 <dd><p>Average length of all edges in the surface.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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-</div>
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+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.avg_edge_length.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.boundary_vertices.html b/generated/Surface/cortex.polyutils.Surface.boundary_vertices.html
index 57689d7c6..41fcdb8f8 100644
--- a/generated/Surface/cortex.polyutils.Surface.boundary_vertices.html
+++ b/generated/Surface/cortex.polyutils.Surface.boundary_vertices.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.boundary_vertices &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.boundary_vertices &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-boundary-vertices">
-<h1>cortex.polyutils.Surface.boundary_vertices<a class="headerlink" href="#cortex-polyutils-surface-boundary-vertices" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.boundary_vertices<a class="headerlink" href="#cortex-polyutils-surface-boundary-vertices" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.boundary_vertices">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">boundary_vertices</span></span><a class="headerlink" href="#cortex.polyutils.Surface.boundary_vertices" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">boundary_vertices</span></span><a class="headerlink" href="#cortex.polyutils.Surface.boundary_vertices" title="Link to this definition">¶</a></dt>
 <dd><p>return mask of boundary vertices</p>
 <dl class="simple">
 <dt>algorithm: for simple mesh, every edge appears in either 1 or 2 polys</dt><dd><p>1 -&gt; border edge
@@ -97,7 +96,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
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@@ -105,8 +104,8 @@ <h3 id="searchlabel">Quick search</h3>
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-</div>
-<script>$('#searchbox').show(0);</script>
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@@ -120,11 +119,11 @@ <h3 id="searchlabel">Quick search</h3>
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+      &#169;2012, James Gao.
       
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+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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diff --git a/generated/Surface/cortex.polyutils.Surface.call_vtp_geodesic.html b/generated/Surface/cortex.polyutils.Surface.call_vtp_geodesic.html
index 5655ae9d3..b23d2aeda 100644
--- a/generated/Surface/cortex.polyutils.Surface.call_vtp_geodesic.html
+++ b/generated/Surface/cortex.polyutils.Surface.call_vtp_geodesic.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.call_vtp_geodesic &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.call_vtp_geodesic &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-call-vtp-geodesic">
-<h1>cortex.polyutils.Surface.call_vtp_geodesic<a class="headerlink" href="#cortex-polyutils-surface-call-vtp-geodesic" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.call_vtp_geodesic<a class="headerlink" href="#cortex-polyutils-surface-call-vtp-geodesic" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.call_vtp_geodesic">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">call_vtp_geodesic</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.call_vtp_geodesic" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">call_vtp_geodesic</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.call_vtp_geodesic" title="Link to this definition">¶</a></dt>
 <dd><p>Compute geodesic distance using VTP method</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- vertex</strong><span class="classifier">int</span></dt><dd><p>index of vertex to compute geodesic distance from</p>
 </dd>
@@ -100,7 +99,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
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-</div>
-<script>$('#searchbox').show(0);</script>
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@@ -123,11 +122,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.call_vtp_geodesic.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.connected.html b/generated/Surface/cortex.polyutils.Surface.connected.html
index 35ca00ee0..a43f560c7 100644
--- a/generated/Surface/cortex.polyutils.Surface.connected.html
+++ b/generated/Surface/cortex.polyutils.Surface.connected.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.connected &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.connected &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-connected">
-<h1>cortex.polyutils.Surface.connected<a class="headerlink" href="#cortex-polyutils-surface-connected" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.connected<a class="headerlink" href="#cortex-polyutils-surface-connected" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.connected">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">connected</span></span><a class="headerlink" href="#cortex.polyutils.Surface.connected" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">connected</span></span><a class="headerlink" href="#cortex.polyutils.Surface.connected" title="Link to this definition">¶</a></dt>
 <dd><p>Sparse matrix of vertex-face associations.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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-</div>
-<script>$('#searchbox').show(0);</script>
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@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.connected.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.cotangent_weights.html b/generated/Surface/cortex.polyutils.Surface.cotangent_weights.html
index 7d3b4dbc2..20a57db27 100644
--- a/generated/Surface/cortex.polyutils.Surface.cotangent_weights.html
+++ b/generated/Surface/cortex.polyutils.Surface.cotangent_weights.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.cotangent_weights &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.cotangent_weights &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-cotangent-weights">
-<h1>cortex.polyutils.Surface.cotangent_weights<a class="headerlink" href="#cortex-polyutils-surface-cotangent-weights" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.cotangent_weights<a class="headerlink" href="#cortex-polyutils-surface-cotangent-weights" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.cotangent_weights">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">cotangent_weights</span></span><a class="headerlink" href="#cortex.polyutils.Surface.cotangent_weights" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">cotangent_weights</span></span><a class="headerlink" href="#cortex.polyutils.Surface.cotangent_weights" title="Link to this definition">¶</a></dt>
 <dd><p>Cotangent of angle opposite each vertex in each face.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.cotangent_weights.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.create_biharmonic_solver.html b/generated/Surface/cortex.polyutils.Surface.create_biharmonic_solver.html
index aeb94b387..3c49ccf34 100644
--- a/generated/Surface/cortex.polyutils.Surface.create_biharmonic_solver.html
+++ b/generated/Surface/cortex.polyutils.Surface.create_biharmonic_solver.html
@@ -1,30 +1,29 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.create_biharmonic_solver &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.create_biharmonic_solver &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
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@@ -37,10 +36,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-create-biharmonic-solver">
-<h1>cortex.polyutils.Surface.create_biharmonic_solver<a class="headerlink" href="#cortex-polyutils-surface-create-biharmonic-solver" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.create_biharmonic_solver<a class="headerlink" href="#cortex-polyutils-surface-create-biharmonic-solver" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.create_biharmonic_solver">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">create_biharmonic_solver</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">boundary_verts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">clip_D</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.create_biharmonic_solver"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.create_biharmonic_solver" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">create_biharmonic_solver</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">boundary_verts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">clip_D</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.create_biharmonic_solver"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.create_biharmonic_solver" title="Link to this definition">¶</a></dt>
 <dd><p>Set up biharmonic equation with Dirichlet boundary conditions on the cortical
 mesh and precompute Cholesky factorization for solving it. The vertices listed in
 <cite>boundary_verts</cite> are considered part of the boundary, and will not be included in
@@ -56,13 +55,13 @@ <h1>cortex.polyutils.Surface.create_biharmonic_solver<a class="headerlink" href=
 \left[ D^{-1} (V-W) D^{-1} (V-W) \right]_{u} \phi &amp;=&amp; -\rho_{u} \\
 \left[ (V-W) D^{-1} (V-W) \right]_{u} \phi &amp;=&amp; -\left[D \rho\right]_{u}
 \end{eqnarray}</div><dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>boundary_verts</strong><span class="classifier">list or ndarray of length V</span></dt><dd><p>Indices of vertices that will be part of the Dirichlet boundary.</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>lhs</strong><span class="classifier">sparse matrix</span></dt><dd><p>Left side of biharmonic problem, (V-W) D^{-1} (V-W)</p>
 </dd>
@@ -128,7 +127,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -136,8 +135,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -151,11 +150,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.create_biharmonic_solver.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.create_subsurface.html b/generated/Surface/cortex.polyutils.Surface.create_subsurface.html
index d54590e6e..f83ce1dc4 100644
--- a/generated/Surface/cortex.polyutils.Surface.create_subsurface.html
+++ b/generated/Surface/cortex.polyutils.Surface.create_subsurface.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.create_subsurface &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.create_subsurface &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-create-subsurface">
-<h1>cortex.polyutils.Surface.create_subsurface<a class="headerlink" href="#cortex-polyutils-surface-create-subsurface" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.create_subsurface<a class="headerlink" href="#cortex-polyutils-surface-create-subsurface" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.create_subsurface">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">create_subsurface</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex_mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polygon_mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.create_subsurface" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">create_subsurface</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex_mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polygon_mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.create_subsurface" title="Link to this definition">¶</a></dt>
 <dd><p>Create subsurface for efficient operations on subset of Surface</p>
 <ul class="simple">
 <li><p>should specify either vertex_mask or polygon_mask</p></li>
@@ -53,7 +52,7 @@ <h1>cortex.polyutils.Surface.create_subsurface<a class="headerlink" href="#corte
 </li>
 </ul>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- vertex_mask</strong><span class="classifier">boolean array</span></dt><dd><ul class="simple">
 <li><p>mask of which vertices to include</p></li>
@@ -117,7 +116,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -125,8 +124,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -140,11 +139,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.create_subsurface.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.edge_collapse.html b/generated/Surface/cortex.polyutils.Surface.edge_collapse.html
index ad1cd1834..ae8b25500 100644
--- a/generated/Surface/cortex.polyutils.Surface.edge_collapse.html
+++ b/generated/Surface/cortex.polyutils.Surface.edge_collapse.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.edge_collapse &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.edge_collapse &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-edge-collapse">
-<h1>cortex.polyutils.Surface.edge_collapse<a class="headerlink" href="#cortex-polyutils-surface-edge-collapse" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.edge_collapse<a class="headerlink" href="#cortex-polyutils-surface-edge-collapse" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.edge_collapse">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">edge_collapse</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">p1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.edge_collapse"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.edge_collapse" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">edge_collapse</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">p1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">p2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">target</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.edge_collapse"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.edge_collapse" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.edge_collapse.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.edge_lengths.html b/generated/Surface/cortex.polyutils.Surface.edge_lengths.html
index 65c1361cf..09c922a48 100644
--- a/generated/Surface/cortex.polyutils.Surface.edge_lengths.html
+++ b/generated/Surface/cortex.polyutils.Surface.edge_lengths.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.edge_lengths &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.edge_lengths &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-edge-lengths">
-<h1>cortex.polyutils.Surface.edge_lengths<a class="headerlink" href="#cortex-polyutils-surface-edge-lengths" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.edge_lengths<a class="headerlink" href="#cortex-polyutils-surface-edge-lengths" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.edge_lengths">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">edge_lengths</span></span><a class="headerlink" href="#cortex.polyutils.Surface.edge_lengths" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">edge_lengths</span></span><a class="headerlink" href="#cortex.polyutils.Surface.edge_lengths" title="Link to this definition">¶</a></dt>
 <dd><p>return vector of edge lengths</p>
 <ul class="simple">
 <li><dl class="simple">
@@ -101,7 +100,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -109,8 +108,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -124,11 +123,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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+      &#169;2012, James Gao.
       
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
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diff --git a/generated/Surface/cortex.polyutils.Surface.exact_geodesic_distance.html b/generated/Surface/cortex.polyutils.Surface.exact_geodesic_distance.html
index 644e84e07..cb017889e 100644
--- a/generated/Surface/cortex.polyutils.Surface.exact_geodesic_distance.html
+++ b/generated/Surface/cortex.polyutils.Surface.exact_geodesic_distance.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.exact_geodesic_distance &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.exact_geodesic_distance &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
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+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-exact-geodesic-distance">
-<h1>cortex.polyutils.Surface.exact_geodesic_distance<a class="headerlink" href="#cortex-polyutils-surface-exact-geodesic-distance" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.exact_geodesic_distance<a class="headerlink" href="#cortex-polyutils-surface-exact-geodesic-distance" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.exact_geodesic_distance">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">exact_geodesic_distance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.exact_geodesic_distance" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">exact_geodesic_distance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.exact_geodesic_distance" title="Link to this definition">¶</a></dt>
 <dd><p>Compute exact geodesic distance along surface</p>
 <ul class="simple">
 <li><p>uses VTP geodesic algorithm</p></li>
 </ul>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- vertex</strong><span class="classifier">int or list of int</span></dt><dd><p>index of vertex or vertices to compute geodesic distance from</p>
 </dd>
@@ -103,7 +102,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -111,8 +110,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -126,11 +125,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.exact_geodesic_distance.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.extract_chunk.html b/generated/Surface/cortex.polyutils.Surface.extract_chunk.html
index 27796ab17..0ed042036 100644
--- a/generated/Surface/cortex.polyutils.Surface.extract_chunk.html
+++ b/generated/Surface/cortex.polyutils.Surface.extract_chunk.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.extract_chunk &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.extract_chunk &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-extract-chunk">
-<h1>cortex.polyutils.Surface.extract_chunk<a class="headerlink" href="#cortex-polyutils-surface-extract-chunk" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.extract_chunk<a class="headerlink" href="#cortex-polyutils-surface-extract-chunk" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.extract_chunk">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">extract_chunk</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nfaces</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auxpts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.extract_chunk"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.extract_chunk" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">extract_chunk</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">nfaces</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auxpts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.extract_chunk"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.extract_chunk" title="Link to this definition">¶</a></dt>
 <dd><p>Extract a chunk of the surface using breadth first search, for testing purposes</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.extract_chunk.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.extract_geodesic_chunk.html b/generated/Surface/cortex.polyutils.Surface.extract_geodesic_chunk.html
index 4f420e84d..20010810a 100644
--- a/generated/Surface/cortex.polyutils.Surface.extract_geodesic_chunk.html
+++ b/generated/Surface/cortex.polyutils.Surface.extract_geodesic_chunk.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.extract_geodesic_chunk &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.extract_geodesic_chunk &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-extract-geodesic-chunk">
-<h1>cortex.polyutils.Surface.extract_geodesic_chunk<a class="headerlink" href="#cortex-polyutils-surface-extract-geodesic-chunk" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.extract_geodesic_chunk<a class="headerlink" href="#cortex-polyutils-surface-extract-geodesic-chunk" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.extract_geodesic_chunk">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">extract_geodesic_chunk</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">origin</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.extract_geodesic_chunk"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.extract_geodesic_chunk" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">extract_geodesic_chunk</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">origin</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.extract_geodesic_chunk"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.extract_geodesic_chunk" title="Link to this definition">¶</a></dt>
 <dd><p>Extract a chunk of the surface that is within radius of the origin by
 geodesic distance.</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.extract_geodesic_chunk.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.face_areas.html b/generated/Surface/cortex.polyutils.Surface.face_areas.html
index 4e05ed754..8f7eba780 100644
--- a/generated/Surface/cortex.polyutils.Surface.face_areas.html
+++ b/generated/Surface/cortex.polyutils.Surface.face_areas.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.face_areas &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.face_areas &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-face-areas">
-<h1>cortex.polyutils.Surface.face_areas<a class="headerlink" href="#cortex-polyutils-surface-face-areas" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.face_areas<a class="headerlink" href="#cortex-polyutils-surface-face-areas" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.face_areas">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">face_areas</span></span><a class="headerlink" href="#cortex.polyutils.Surface.face_areas" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">face_areas</span></span><a class="headerlink" href="#cortex.polyutils.Surface.face_areas" title="Link to this definition">¶</a></dt>
 <dd><p>Area of each face.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
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     </form>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.face_areas.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.face_normals.html b/generated/Surface/cortex.polyutils.Surface.face_normals.html
index 084512a65..e7a895e41 100644
--- a/generated/Surface/cortex.polyutils.Surface.face_normals.html
+++ b/generated/Surface/cortex.polyutils.Surface.face_normals.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.face_normals &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.face_normals &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-face-normals">
-<h1>cortex.polyutils.Surface.face_normals<a class="headerlink" href="#cortex-polyutils-surface-face-normals" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.face_normals<a class="headerlink" href="#cortex-polyutils-surface-face-normals" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.face_normals">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">face_normals</span></span><a class="headerlink" href="#cortex.polyutils.Surface.face_normals" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">face_normals</span></span><a class="headerlink" href="#cortex.polyutils.Surface.face_normals" title="Link to this definition">¶</a></dt>
 <dd><p>Normal vector for each face.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.face_normals.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.furthest_border_points.html b/generated/Surface/cortex.polyutils.Surface.furthest_border_points.html
index 697580982..3c5d0bf66 100644
--- a/generated/Surface/cortex.polyutils.Surface.furthest_border_points.html
+++ b/generated/Surface/cortex.polyutils.Surface.furthest_border_points.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.furthest_border_points &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.furthest_border_points &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-furthest-border-points">
-<h1>cortex.polyutils.Surface.furthest_border_points<a class="headerlink" href="#cortex-polyutils-surface-furthest-border-points" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.furthest_border_points<a class="headerlink" href="#cortex-polyutils-surface-furthest-border-points" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.furthest_border_points">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">furthest_border_points</span></span><a class="headerlink" href="#cortex.polyutils.Surface.furthest_border_points" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">furthest_border_points</span></span><a class="headerlink" href="#cortex.polyutils.Surface.furthest_border_points" title="Link to this definition">¶</a></dt>
 <dd><p>return pair of points on surface border that have largest pairwise geodesic distance</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
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       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.furthest_border_points.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.geodesic_distance.html b/generated/Surface/cortex.polyutils.Surface.geodesic_distance.html
index a786737bc..7542e4b69 100644
--- a/generated/Surface/cortex.polyutils.Surface.geodesic_distance.html
+++ b/generated/Surface/cortex.polyutils.Surface.geodesic_distance.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.geodesic_distance &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.geodesic_distance &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-geodesic-distance">
-<h1>cortex.polyutils.Surface.geodesic_distance<a class="headerlink" href="#cortex-polyutils-surface-geodesic-distance" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.geodesic_distance<a class="headerlink" href="#cortex-polyutils-surface-geodesic-distance" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.geodesic_distance">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">geodesic_distance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">m</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fem</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.geodesic_distance"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.geodesic_distance" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">geodesic_distance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">m</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fem</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.geodesic_distance"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.geodesic_distance" title="Link to this definition">¶</a></dt>
 <dd><p>Minimum mesh geodesic distance (in mm) from each vertex in surface to any
 vertex in the collection <cite>verts</cite>.</p>
 <p>Geodesic distance is estimated using heat-based method (see ‘Geodesics in Heat’,
@@ -53,7 +52,7 @@ <h1>cortex.polyutils.Surface.geodesic_distance<a class="headerlink" href="#corte
 subsequent runs.</p>
 <p>The time taken by this function is independent of the number of vertices in verts.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>verts</strong><span class="classifier">1D array-like of ints</span></dt><dd><p>Set of vertices to compute distance from. This function returns the shortest
 distance to any of these vertices from every vertex in the surface.</p>
@@ -66,7 +65,7 @@ <h1>cortex.polyutils.Surface.geodesic_distance<a class="headerlink" href="#corte
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>1D ndarray, shape (total_verts,)</dt><dd><p>Geodesic distance (in mm) from each vertex in the surface to the closest
 vertex in <cite>verts</cite>.</p>
@@ -125,7 +124,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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-</div>
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@@ -148,11 +147,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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+      &#169;2012, James Gao.
       
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-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.geodesic_distance.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.geodesic_path.html b/generated/Surface/cortex.polyutils.Surface.geodesic_path.html
index 6ea1a8c7d..42bed98e1 100644
--- a/generated/Surface/cortex.polyutils.Surface.geodesic_path.html
+++ b/generated/Surface/cortex.polyutils.Surface.geodesic_path.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+
+    <title>cortex.polyutils.Surface.geodesic_path &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-geodesic-path">
-<h1>cortex.polyutils.Surface.geodesic_path<a class="headerlink" href="#cortex-polyutils-surface-geodesic-path" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.geodesic_path<a class="headerlink" href="#cortex-polyutils-surface-geodesic-path" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.geodesic_path">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">geodesic_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">a</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">b</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_len</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1000</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">d</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.geodesic_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.geodesic_path" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">geodesic_path</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">a</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">b</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_len</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1000</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">d</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.geodesic_path"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.geodesic_path" title="Link to this definition">¶</a></dt>
 <dd><p>Finds the shortest path between two points <cite>a</cite> and <cite>b</cite>.</p>
 <p>This shortest path is based on geodesic distances across the surface.
 The path starts at point <cite>a</cite> and selects the neighbor of <cite>a</cite> in the 
@@ -48,7 +47,7 @@ <h1>cortex.polyutils.Surface.geodesic_path<a class="headerlink" href="#cortex-po
 <p>Other Parameters in kwargs are passed to the geodesic_distance 
 function to alter how geodesic distances are actually measured</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>a</strong><span class="classifier">int</span></dt><dd><p>Vertex that is the start of the path</p>
 </dd>
@@ -58,13 +57,13 @@ <h1>cortex.polyutils.Surface.geodesic_path<a class="headerlink" href="#cortex-po
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>path</strong><span class="classifier">list</span></dt><dd><p>List of the vertices in the path from a to b</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-odd">Other Parameters</dt>
+<dt class="field-odd">Other Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>max_len</strong><span class="classifier">int, optional, default=1000</span></dt><dd><p>Maximum path length before the function quits. Sometimes it can get stuck
 in loops, causing infinite paths.</p>
@@ -129,7 +128,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -137,8 +136,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -152,11 +151,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.geodesic_path.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.get_connected_vertices.html b/generated/Surface/cortex.polyutils.Surface.get_connected_vertices.html
index 8c2e5fa08..b4978a969 100644
--- a/generated/Surface/cortex.polyutils.Surface.get_connected_vertices.html
+++ b/generated/Surface/cortex.polyutils.Surface.get_connected_vertices.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.get_connected_vertices &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.get_connected_vertices &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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+  
   
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   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-get-connected-vertices">
-<h1>cortex.polyutils.Surface.get_connected_vertices<a class="headerlink" href="#cortex-polyutils-surface-get-connected-vertices" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.get_connected_vertices<a class="headerlink" href="#cortex-polyutils-surface-get-connected-vertices" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.get_connected_vertices">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_connected_vertices</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_connected_vertices" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_connected_vertices</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_connected_vertices" title="Link to this definition">¶</a></dt>
 <dd><p>return vertices connected to vertex that satisfy mask</p>
 <ul class="simple">
 <li><p>helper method for other methods</p></li>
 </ul>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- vertex</strong><span class="classifier">one of [scalar int index | list of int indices | numpy array of int indices]</span></dt><dd><p>vertex or set of vertices to use as seed</p>
 </dd>
@@ -109,7 +108,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -117,8 +116,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -132,11 +131,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.get_connected_vertices.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.get_euclidean_ball.html b/generated/Surface/cortex.polyutils.Surface.get_euclidean_ball.html
index b5cfd1bd8..317315242 100644
--- a/generated/Surface/cortex.polyutils.Surface.get_euclidean_ball.html
+++ b/generated/Surface/cortex.polyutils.Surface.get_euclidean_ball.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.get_euclidean_ball &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.get_euclidean_ball &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-get-euclidean-ball">
-<h1>cortex.polyutils.Surface.get_euclidean_ball<a class="headerlink" href="#cortex-polyutils-surface-get-euclidean-ball" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.get_euclidean_ball<a class="headerlink" href="#cortex-polyutils-surface-get-euclidean-ball" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.get_euclidean_ball">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_euclidean_ball</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xyz</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_euclidean_ball" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_euclidean_ball</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xyz</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_euclidean_ball" title="Link to this definition">¶</a></dt>
 <dd><p>return vertices within some 3d euclidean distance of an xyz coordinate</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- xyz</strong><span class="classifier">array of shape (3,)</span></dt><dd><p>center of euclidean ball</p>
 </dd>
@@ -102,7 +101,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -110,8 +109,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -125,11 +124,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.get_euclidean_ball.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.get_euclidean_patch.html b/generated/Surface/cortex.polyutils.Surface.get_euclidean_patch.html
index f210a6743..ef81e7c4f 100644
--- a/generated/Surface/cortex.polyutils.Surface.get_euclidean_patch.html
+++ b/generated/Surface/cortex.polyutils.Surface.get_euclidean_patch.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.get_euclidean_patch &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <title>cortex.polyutils.Surface.get_euclidean_patch &#8212; pycortex 1.2.8 documentation</title>
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@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-get-euclidean-patch">
-<h1>cortex.polyutils.Surface.get_euclidean_patch<a class="headerlink" href="#cortex-polyutils-surface-get-euclidean-patch" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.get_euclidean_patch<a class="headerlink" href="#cortex-polyutils-surface-get-euclidean-patch" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.get_euclidean_patch">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_euclidean_patch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_euclidean_patch" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_euclidean_patch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_euclidean_patch" title="Link to this definition">¶</a></dt>
 <dd><p>return connected vertices within some 3d euclidean distance of a vertex</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- vertex</strong><span class="classifier">one of [scalar int index | list of int indices | numpy array of int indices]</span></dt><dd><p>vertex or set of vertices to use as seed</p>
 </dd>
@@ -106,7 +105,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -114,8 +113,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -129,11 +128,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.get_euclidean_patch.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.get_geodesic_patch.html b/generated/Surface/cortex.polyutils.Surface.get_geodesic_patch.html
index 0b8a9dc86..27ae402c1 100644
--- a/generated/Surface/cortex.polyutils.Surface.get_geodesic_patch.html
+++ b/generated/Surface/cortex.polyutils.Surface.get_geodesic_patch.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.get_geodesic_patch &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.get_geodesic_patch &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-get-geodesic-patch">
-<h1>cortex.polyutils.Surface.get_geodesic_patch<a class="headerlink" href="#cortex-polyutils-surface-get-geodesic-patch" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.get_geodesic_patch<a class="headerlink" href="#cortex-polyutils-surface-get-geodesic-patch" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.get_geodesic_patch">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_geodesic_patch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">attempts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">m</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_geodesic_patch" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_geodesic_patch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">vertex</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">attempts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">m</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_geodesic_patch" title="Link to this definition">¶</a></dt>
 <dd><p>return vertices within some 2d geodesic distance of a vertex (or vertices)</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- vertex</strong><span class="classifier">int</span></dt><dd><p>index (or list of int indices) of seed vertex (or vertices)</p>
 </dd>
@@ -110,7 +109,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -118,8 +117,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -133,11 +132,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.get_geodesic_patch.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.get_geodesic_patches.html b/generated/Surface/cortex.polyutils.Surface.get_geodesic_patches.html
index 0d34f650b..5b55e4b85 100644
--- a/generated/Surface/cortex.polyutils.Surface.get_geodesic_patches.html
+++ b/generated/Surface/cortex.polyutils.Surface.get_geodesic_patches.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.get_geodesic_patches &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.get_geodesic_patches &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-get-geodesic-patches">
-<h1>cortex.polyutils.Surface.get_geodesic_patches<a class="headerlink" href="#cortex-polyutils-surface-get-geodesic-patches" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.get_geodesic_patches<a class="headerlink" href="#cortex-polyutils-surface-get-geodesic-patches" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.get_geodesic_patches">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_geodesic_patches</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">seeds</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_random_seeds</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'dense'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_geodesic_patches" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_geodesic_patches</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">seeds</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_random_seeds</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'dense'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_geodesic_patches" title="Link to this definition">¶</a></dt>
 <dd><p>create patches of cortex centered around each vertex seed</p>
 <ul class="simple">
 <li><p>must specify seeds or n_random_seeds</p></li>
 </ul>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- radius</strong><span class="classifier">number</span></dt><dd><p>radius of searchlights</p>
 </dd>
@@ -110,7 +109,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -118,8 +117,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -133,11 +132,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.get_geodesic_patches.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.get_geodesic_strip_patch.html b/generated/Surface/cortex.polyutils.Surface.get_geodesic_strip_patch.html
index 7bbbcb2af..8dc29af74 100644
--- a/generated/Surface/cortex.polyutils.Surface.get_geodesic_strip_patch.html
+++ b/generated/Surface/cortex.polyutils.Surface.get_geodesic_strip_patch.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.get_geodesic_strip_patch &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.get_geodesic_strip_patch &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-get-geodesic-strip-patch">
-<h1>cortex.polyutils.Surface.get_geodesic_strip_patch<a class="headerlink" href="#cortex-polyutils-surface-get-geodesic-strip-patch" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.get_geodesic_strip_patch<a class="headerlink" href="#cortex-polyutils-surface-get-geodesic-strip-patch" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.get_geodesic_strip_patch">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_geodesic_strip_patch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">v0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">v1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">room_factor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'bb'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">graph_search</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'astar'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">include_strip_coordinates</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_geodesic_strip_patch" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_geodesic_strip_patch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">v0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">v1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">room_factor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'bb'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">graph_search</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'astar'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">include_strip_coordinates</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_geodesic_strip_patch" title="Link to this definition">¶</a></dt>
 <dd><p>return patch that includes v0, v1, their geodesic path, and all points within some radius</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- v0</strong><span class="classifier">int</span></dt><dd><p>index of start point</p>
 </dd>
@@ -112,7 +111,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -120,8 +119,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -135,11 +134,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.get_geodesic_strip_patch.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.get_graph.html b/generated/Surface/cortex.polyutils.Surface.get_graph.html
index 2899bcd0c..9dd021737 100644
--- a/generated/Surface/cortex.polyutils.Surface.get_graph.html
+++ b/generated/Surface/cortex.polyutils.Surface.get_graph.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.get_graph &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
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-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.get_graph &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-get-graph">
-<h1>cortex.polyutils.Surface.get_graph<a class="headerlink" href="#cortex-polyutils-surface-get-graph" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.get_graph<a class="headerlink" href="#cortex-polyutils-surface-get-graph" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.get_graph">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_graph</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.get_graph"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.get_graph" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_graph</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.get_graph"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.get_graph" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.get_graph.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.get_strip_coordinates.html b/generated/Surface/cortex.polyutils.Surface.get_strip_coordinates.html
index cbeac0bd7..e8792663e 100644
--- a/generated/Surface/cortex.polyutils.Surface.get_strip_coordinates.html
+++ b/generated/Surface/cortex.polyutils.Surface.get_strip_coordinates.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.get_strip_coordinates &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.get_strip_coordinates &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-get-strip-coordinates">
-<h1>cortex.polyutils.Surface.get_strip_coordinates<a class="headerlink" href="#cortex-polyutils-surface-get-strip-coordinates" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.get_strip_coordinates<a class="headerlink" href="#cortex-polyutils-surface-get-strip-coordinates" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.get_strip_coordinates">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_strip_coordinates</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">v0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">v1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geodesic_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">distance_algorithm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'softmax'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_strip_coordinates" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">get_strip_coordinates</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">v0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">v1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">geodesic_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">distance_algorithm</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'softmax'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.get_strip_coordinates" title="Link to this definition">¶</a></dt>
 <dd><p>get 2D coordinates of surface from v0 to v1</p>
 <ul class="simple">
 <li><p>first coordinate: distance along geodesic path from v0</p></li>
@@ -60,7 +59,7 @@ <h1>cortex.polyutils.Surface.get_strip_coordinates<a class="headerlink" href="#c
 </li>
 </ul>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- v0</strong><span class="classifier">int</span></dt><dd><p>index of starting point</p>
 </dd>
@@ -124,7 +123,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -132,8 +131,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -147,11 +146,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.get_strip_coordinates.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.graph.html b/generated/Surface/cortex.polyutils.Surface.graph.html
index 5ee146d85..7507111f0 100644
--- a/generated/Surface/cortex.polyutils.Surface.graph.html
+++ b/generated/Surface/cortex.polyutils.Surface.graph.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.graph &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.graph &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-graph">
-<h1>cortex.polyutils.Surface.graph<a class="headerlink" href="#cortex-polyutils-surface-graph" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.graph<a class="headerlink" href="#cortex-polyutils-surface-graph" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.graph">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">graph</span></span><a class="headerlink" href="#cortex.polyutils.Surface.graph" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">graph</span></span><a class="headerlink" href="#cortex.polyutils.Surface.graph" title="Link to this definition">¶</a></dt>
 <dd><p>NetworkX undirected graph representing this Surface.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.graph.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.interp.html b/generated/Surface/cortex.polyutils.Surface.interp.html
index 8aef1efc0..f4b195882 100644
--- a/generated/Surface/cortex.polyutils.Surface.interp.html
+++ b/generated/Surface/cortex.polyutils.Surface.interp.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.interp &#8212; pycortex 1.2.4 documentation</title>
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+    <title>cortex.polyutils.Surface.interp &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-interp">
-<h1>cortex.polyutils.Surface.interp<a class="headerlink" href="#cortex-polyutils-surface-interp" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.interp<a class="headerlink" href="#cortex-polyutils-surface-interp" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.interp">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">interp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vals</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.interp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.interp" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">interp</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">verts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vals</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.interp"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.interp" title="Link to this definition">¶</a></dt>
 <dd><p>Interpolates a function between N knot points <cite>verts</cite> with the values <cite>vals</cite>.
 <cite>vals</cite> can be a D x N array to interpolate multiple functions with the same
 knot points.</p>
@@ -49,7 +48,7 @@ <h1>cortex.polyutils.Surface.interp<a class="headerlink" href="#cortex-polyutils
 In fact, that’s exactly what this function does.</p>
 <p>See create_biharmonic_solver for math details.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>verts</strong><span class="classifier">1D array-like of ints</span></dt><dd><p>Indices of vertices that will serve as knot points for interpolation.</p>
 </dd>
@@ -57,7 +56,7 @@ <h1>cortex.polyutils.Surface.interp<a class="headerlink" href="#cortex-polyutils
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>tphi</strong><span class="classifier">2D ndarray, shape (total_verts, dimensions)</span></dt><dd><p>Interpolated value at every vertex on the surface.</p>
 </dd>
@@ -115,7 +114,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
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@@ -138,11 +137,11 @@ <h3 id="searchlabel">Quick search</h3>
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diff --git a/generated/Surface/cortex.polyutils.Surface.iter_surfedges.html b/generated/Surface/cortex.polyutils.Surface.iter_surfedges.html
index 7fe59017c..26bc5b332 100644
--- a/generated/Surface/cortex.polyutils.Surface.iter_surfedges.html
+++ b/generated/Surface/cortex.polyutils.Surface.iter_surfedges.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
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@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-iter-surfedges">
-<h1>cortex.polyutils.Surface.iter_surfedges<a class="headerlink" href="#cortex-polyutils-surface-iter-surfedges" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.iter_surfedges<a class="headerlink" href="#cortex-polyutils-surface-iter-surfedges" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.iter_surfedges">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">iter_surfedges</span></span><a class="headerlink" href="#cortex.polyutils.Surface.iter_surfedges" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">iter_surfedges</span></span><a class="headerlink" href="#cortex.polyutils.Surface.iter_surfedges" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
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@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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diff --git a/generated/Surface/cortex.polyutils.Surface.iter_surfedges_weighted.html b/generated/Surface/cortex.polyutils.Surface.iter_surfedges_weighted.html
index 3b1b55439..bdff35a0f 100644
--- a/generated/Surface/cortex.polyutils.Surface.iter_surfedges_weighted.html
+++ b/generated/Surface/cortex.polyutils.Surface.iter_surfedges_weighted.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.iter_surfedges_weighted &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-iter-surfedges-weighted">
-<h1>cortex.polyutils.Surface.iter_surfedges_weighted<a class="headerlink" href="#cortex-polyutils-surface-iter-surfedges-weighted" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.iter_surfedges_weighted<a class="headerlink" href="#cortex-polyutils-surface-iter-surfedges-weighted" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.iter_surfedges_weighted">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">iter_surfedges_weighted</span></span><a class="headerlink" href="#cortex.polyutils.Surface.iter_surfedges_weighted" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">iter_surfedges_weighted</span></span><a class="headerlink" href="#cortex.polyutils.Surface.iter_surfedges_weighted" title="Link to this definition">¶</a></dt>
 <dd><p>iterate through edges</p>
 <ul class="simple">
 <li><dl class="simple">
@@ -101,7 +100,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
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@@ -124,11 +123,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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diff --git a/generated/Surface/cortex.polyutils.Surface.laplace_operator.html b/generated/Surface/cortex.polyutils.Surface.laplace_operator.html
index ff40d0912..8bb950d49 100644
--- a/generated/Surface/cortex.polyutils.Surface.laplace_operator.html
+++ b/generated/Surface/cortex.polyutils.Surface.laplace_operator.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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-    <title>cortex.polyutils.Surface.laplace_operator &#8212; pycortex 1.2.4 documentation</title>
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+    <title>cortex.polyutils.Surface.laplace_operator &#8212; pycortex 1.2.8 documentation</title>
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@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-laplace-operator">
-<h1>cortex.polyutils.Surface.laplace_operator<a class="headerlink" href="#cortex-polyutils-surface-laplace-operator" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.laplace_operator<a class="headerlink" href="#cortex-polyutils-surface-laplace-operator" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.laplace_operator">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">laplace_operator</span></span><a class="headerlink" href="#cortex.polyutils.Surface.laplace_operator" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">laplace_operator</span></span><a class="headerlink" href="#cortex.polyutils.Surface.laplace_operator" title="Link to this definition">¶</a></dt>
 <dd><p>Laplace-Beltrami operator for this surface. A sparse adjacency matrix with
 edge weights determined by the cotangents of the angles opposite each edge.
 Returns a 4-tuple (B,D,W,V) where D is the ‘lumped mass matrix’, W is the weighted
@@ -100,7 +99,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
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@@ -108,8 +107,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -123,11 +122,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.laplace_operator.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.lift_subsurface_data.html b/generated/Surface/cortex.polyutils.Surface.lift_subsurface_data.html
index a49d09750..bc43ece12 100644
--- a/generated/Surface/cortex.polyutils.Surface.lift_subsurface_data.html
+++ b/generated/Surface/cortex.polyutils.Surface.lift_subsurface_data.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.lift_subsurface_data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.lift_subsurface_data &#8212; pycortex 1.2.8 documentation</title>
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-lift-subsurface-data">
-<h1>cortex.polyutils.Surface.lift_subsurface_data<a class="headerlink" href="#cortex-polyutils-surface-lift-subsurface-data" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.lift_subsurface_data<a class="headerlink" href="#cortex-polyutils-surface-lift-subsurface-data" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.lift_subsurface_data">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">lift_subsurface_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vertex_mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.lift_subsurface_data" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">lift_subsurface_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vertex_mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.lift_subsurface_data" title="Link to this definition">¶</a></dt>
 <dd><p>expand vertex dimension of data to original surface’s size</p>
 <ul class="simple">
 <li><dl class="simple">
@@ -51,7 +50,7 @@ <h1>cortex.polyutils.Surface.lift_subsurface_data<a class="headerlink" href="#co
 </li>
 </ul>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>- data</strong><span class="classifier">array</span></dt><dd><p>data to lift into original surface dimension</p>
 </dd>
@@ -111,7 +110,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -119,8 +118,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -134,11 +133,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.lift_subsurface_data.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.mean_curvature.html b/generated/Surface/cortex.polyutils.Surface.mean_curvature.html
index 87357c4e1..4172572a0 100644
--- a/generated/Surface/cortex.polyutils.Surface.mean_curvature.html
+++ b/generated/Surface/cortex.polyutils.Surface.mean_curvature.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.mean_curvature &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.mean_curvature &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-mean-curvature">
-<h1>cortex.polyutils.Surface.mean_curvature<a class="headerlink" href="#cortex-polyutils-surface-mean-curvature" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.mean_curvature<a class="headerlink" href="#cortex-polyutils-surface-mean-curvature" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.mean_curvature">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">mean_curvature</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.mean_curvature"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.mean_curvature" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">mean_curvature</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.mean_curvature"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.mean_curvature" title="Link to this definition">¶</a></dt>
 <dd><p>Compute mean curvature of this surface using the Laplace-Beltrami operator.
 Curvature is computed at each vertex. It’s probably pretty noisy, and should
 be smoothed using smooth().</p>
@@ -47,7 +46,7 @@ <h1>cortex.polyutils.Surface.mean_curvature<a class="headerlink" href="#cortex-p
 (as in a sulcus), positive values of curvature mean that the surface is
 folded outward (as on a gyrus).</p>
 <dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>curv</strong><span class="classifier">1D ndarray, shape (total_verts,)</span></dt><dd><p>The mean curvature at each vertex.</p>
 </dd>
@@ -105,7 +104,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -113,8 +112,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -128,11 +127,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.mean_curvature.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.patches.html b/generated/Surface/cortex.polyutils.Surface.patches.html
index c6aa4ef97..c7e8d906e 100644
--- a/generated/Surface/cortex.polyutils.Surface.patches.html
+++ b/generated/Surface/cortex.polyutils.Surface.patches.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.patches &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.patches &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-patches">
-<h1>cortex.polyutils.Surface.patches<a class="headerlink" href="#cortex-polyutils-surface-patches" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.patches<a class="headerlink" href="#cortex-polyutils-surface-patches" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.patches">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">patches</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">auxpts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.patches"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.patches" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">patches</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">auxpts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.patches"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.patches" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.patches.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.plot_subsurface_rotating_gif.html b/generated/Surface/cortex.polyutils.Surface.plot_subsurface_rotating_gif.html
index 31abdd776..d4a8c9d3d 100644
--- a/generated/Surface/cortex.polyutils.Surface.plot_subsurface_rotating_gif.html
+++ b/generated/Surface/cortex.polyutils.Surface.plot_subsurface_rotating_gif.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.plot_subsurface_rotating_gif &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-plot-subsurface-rotating-gif">
-<h1>cortex.polyutils.Surface.plot_subsurface_rotating_gif<a class="headerlink" href="#cortex-polyutils-surface-plot-subsurface-rotating-gif" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.plot_subsurface_rotating_gif<a class="headerlink" href="#cortex-polyutils-surface-plot-subsurface-rotating-gif" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.plot_subsurface_rotating_gif">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">plot_subsurface_rotating_gif</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">N_frames</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">48</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fps</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">12</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">angles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vis_data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_patch_verticies</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_patch_edges</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_patch_triangles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_subpatch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_rim_points</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_rim_edges</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">point_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'b'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">line_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'k'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">face_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'r'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.plot_subsurface_rotating_gif" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">plot_subsurface_rotating_gif</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">N_frames</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">48</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fps</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">12</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">angles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vis_data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_patch_verticies</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_patch_edges</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_patch_triangles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_subpatch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_rim_points</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">disp_rim_edges</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">point_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'b'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">line_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'k'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">face_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'r'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.polyutils.Surface.plot_subsurface_rotating_gif" title="Link to this definition">¶</a></dt>
 <dd><p>create a rotating gif of subsurface</p>
 <ul class="simple">
 <li><dl class="simple">
@@ -102,7 +101,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -110,8 +109,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -125,11 +124,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.plot_subsurface_rotating_gif.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.polyhedra.html b/generated/Surface/cortex.polyutils.Surface.polyhedra.html
index 0d4124fd7..5a5028795 100644
--- a/generated/Surface/cortex.polyutils.Surface.polyhedra.html
+++ b/generated/Surface/cortex.polyutils.Surface.polyhedra.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.polyhedra &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.polyhedra &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-polyhedra">
-<h1>cortex.polyutils.Surface.polyhedra<a class="headerlink" href="#cortex-polyutils-surface-polyhedra" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.polyhedra<a class="headerlink" href="#cortex-polyutils-surface-polyhedra" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.polyhedra">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">polyhedra</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">wm</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.polyhedra"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.polyhedra" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">polyhedra</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">wm</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.polyhedra"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.polyhedra" title="Link to this definition">¶</a></dt>
 <dd><p>Iterates through the polyhedra that make up the closest volume to a certain vertex</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
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@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.polyhedra.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.ppts.html b/generated/Surface/cortex.polyutils.Surface.ppts.html
index f6b05a20e..2b159c25f 100644
--- a/generated/Surface/cortex.polyutils.Surface.ppts.html
+++ b/generated/Surface/cortex.polyutils.Surface.ppts.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.ppts &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.ppts &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-ppts">
-<h1>cortex.polyutils.Surface.ppts<a class="headerlink" href="#cortex-polyutils-surface-ppts" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.ppts<a class="headerlink" href="#cortex-polyutils-surface-ppts" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.ppts">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">ppts</span></span><a class="headerlink" href="#cortex.polyutils.Surface.ppts" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">ppts</span></span><a class="headerlink" href="#cortex.polyutils.Surface.ppts" title="Link to this definition">¶</a></dt>
 <dd><p>3D matrix of points in each face: n faces x 3 points per face x 3 coords per point.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.ppts.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.smooth.html b/generated/Surface/cortex.polyutils.Surface.smooth.html
index 3391a024c..4a79323db 100644
--- a/generated/Surface/cortex.polyutils.Surface.smooth.html
+++ b/generated/Surface/cortex.polyutils.Surface.smooth.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.smooth &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.smooth &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
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@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-smooth">
-<h1>cortex.polyutils.Surface.smooth<a class="headerlink" href="#cortex-polyutils-surface-smooth" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.smooth<a class="headerlink" href="#cortex-polyutils-surface-smooth" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.smooth">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">smooth</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">scalars</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">factor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iterations</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.smooth"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.smooth" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">smooth</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">scalars</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">factor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">iterations</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.smooth"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.smooth" title="Link to this definition">¶</a></dt>
 <dd><p>Smooth vertex-wise function given by <cite>scalars</cite> across the surface using
 mean curvature flow method (see <a class="reference external" href="http://brickisland.net/cs177fa12/?p=302">http://brickisland.net/cs177fa12/?p=302</a>).</p>
 <p>Amount of smoothing is controlled by <cite>factor</cite>.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>scalars</strong><span class="classifier">1D ndarray, shape (total_verts,)</span></dt><dd><p>A scalar-valued function across the cortex, such as the curvature
 supplied by mean_curvature.</p>
@@ -55,7 +54,7 @@ <h1>cortex.polyutils.Surface.smooth<a class="headerlink" href="#cortex-polyutils
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>smscalars</strong><span class="classifier">1D ndarray, shape (total_verts,)</span></dt><dd><p>Smoothed scalar values.</p>
 </dd>
@@ -113,7 +112,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -121,8 +120,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -136,11 +135,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.smooth.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.subsurface_vertex_inverse.html b/generated/Surface/cortex.polyutils.Surface.subsurface_vertex_inverse.html
index d5570abd9..04c6c3570 100644
--- a/generated/Surface/cortex.polyutils.Surface.subsurface_vertex_inverse.html
+++ b/generated/Surface/cortex.polyutils.Surface.subsurface_vertex_inverse.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.subsurface_vertex_inverse &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.subsurface_vertex_inverse &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-subsurface-vertex-inverse">
-<h1>cortex.polyutils.Surface.subsurface_vertex_inverse<a class="headerlink" href="#cortex-polyutils-surface-subsurface-vertex-inverse" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.subsurface_vertex_inverse<a class="headerlink" href="#cortex-polyutils-surface-subsurface-vertex-inverse" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.subsurface_vertex_inverse">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">subsurface_vertex_inverse</span></span><a class="headerlink" href="#cortex.polyutils.Surface.subsurface_vertex_inverse" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">subsurface_vertex_inverse</span></span><a class="headerlink" href="#cortex.polyutils.Surface.subsurface_vertex_inverse" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.subsurface_vertex_inverse.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.surface_gradient.html b/generated/Surface/cortex.polyutils.Surface.surface_gradient.html
index a5643c644..70877b0af 100644
--- a/generated/Surface/cortex.polyutils.Surface.surface_gradient.html
+++ b/generated/Surface/cortex.polyutils.Surface.surface_gradient.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.surface_gradient &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.surface_gradient &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,24 +35,24 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-surface-gradient">
-<h1>cortex.polyutils.Surface.surface_gradient<a class="headerlink" href="#cortex-polyutils-surface-surface-gradient" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.surface_gradient<a class="headerlink" href="#cortex-polyutils-surface-surface-gradient" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.surface_gradient">
-<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">surface_gradient</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">scalars</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">at_verts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.surface_gradient"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.surface_gradient" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">surface_gradient</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">scalars</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">at_verts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/polyutils/surface.html#Surface.surface_gradient"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface.surface_gradient" title="Link to this definition">¶</a></dt>
 <dd><p>Gradient of a function with values <cite>scalars</cite> at each vertex on the surface.
 If <cite>at_verts</cite>, returns values at each vertex. Otherwise, returns values at each
 face.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>scalars</strong><span class="classifier">1D ndarray, shape (total_verts,)</span></dt><dd><p>A scalar-valued function across the cortex.</p>
 </dd>
 <dt><strong>at_verts</strong><span class="classifier">bool, optional</span></dt><dd><p>If True (default), values will be returned for each vertex. Otherwise,
-values will be retruned for each face.</p>
+values will be returned for each face.</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>gradu</strong><span class="classifier">2D ndarray, shape (total_verts,3) or (total_polys,3)</span></dt><dd><p>Contains the x-, y-, and z-axis gradients of the given <cite>scalars</cite> at either
 each vertex (if <cite>at_verts</cite> is True) or each face.</p>
@@ -112,7 +111,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -120,8 +119,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -135,11 +134,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.surface_gradient.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.vertex_normals.html b/generated/Surface/cortex.polyutils.Surface.vertex_normals.html
index ec7ac55b6..898b412e4 100644
--- a/generated/Surface/cortex.polyutils.Surface.vertex_normals.html
+++ b/generated/Surface/cortex.polyutils.Surface.vertex_normals.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.vertex_normals &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.vertex_normals &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-vertex-normals">
-<h1>cortex.polyutils.Surface.vertex_normals<a class="headerlink" href="#cortex-polyutils-surface-vertex-normals" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.vertex_normals<a class="headerlink" href="#cortex-polyutils-surface-vertex-normals" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.vertex_normals">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">vertex_normals</span></span><a class="headerlink" href="#cortex.polyutils.Surface.vertex_normals" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">vertex_normals</span></span><a class="headerlink" href="#cortex.polyutils.Surface.vertex_normals" title="Link to this definition">¶</a></dt>
 <dd><p>Normal vector for each vertex (average of normals for neighboring faces).</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
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       <input type="submit" value="Go" />
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-</div>
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+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.vertex_normals.rst.txt"
diff --git a/generated/Surface/cortex.polyutils.Surface.weighted_distance_graph.html b/generated/Surface/cortex.polyutils.Surface.weighted_distance_graph.html
index 2cc262662..505860035 100644
--- a/generated/Surface/cortex.polyutils.Surface.weighted_distance_graph.html
+++ b/generated/Surface/cortex.polyutils.Surface.weighted_distance_graph.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Surface.weighted_distance_graph &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Surface.weighted_distance_graph &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface-weighted-distance-graph">
-<h1>cortex.polyutils.Surface.weighted_distance_graph<a class="headerlink" href="#cortex-polyutils-surface-weighted-distance-graph" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface.weighted_distance_graph<a class="headerlink" href="#cortex-polyutils-surface-weighted-distance-graph" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface.weighted_distance_graph">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">weighted_distance_graph</span></span><a class="headerlink" href="#cortex.polyutils.Surface.weighted_distance_graph" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Surface.</span></span><span class="sig-name descname"><span class="pre">weighted_distance_graph</span></span><a class="headerlink" href="#cortex.polyutils.Surface.weighted_distance_graph" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Surface/cortex.polyutils.Surface.weighted_distance_graph.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.__init__.html b/generated/Vertex/cortex.dataset.Vertex.__init__.html
index 19a47762b..d0390091e 100644
--- a/generated/Vertex/cortex.dataset.Vertex.__init__.html
+++ b/generated/Vertex/cortex.dataset.Vertex.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-init">
-<h1>cortex.dataset.Vertex.__init__<a class="headerlink" href="#cortex-dataset-vertex-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.__init__<a class="headerlink" href="#cortex-dataset-vertex-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.__init__">
-<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/views.html#Vertex.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/views.html#Vertex.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.__init__.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.blend_curvature.html b/generated/Vertex/cortex.dataset.Vertex.blend_curvature.html
index b731bbe10..3f780dfdb 100644
--- a/generated/Vertex/cortex.dataset.Vertex.blend_curvature.html
+++ b/generated/Vertex/cortex.dataset.Vertex.blend_curvature.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.blend_curvature &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.blend_curvature &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-blend-curvature">
-<h1>cortex.dataset.Vertex.blend_curvature<a class="headerlink" href="#cortex-dataset-vertex-blend-curvature" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.blend_curvature<a class="headerlink" href="#cortex-dataset-vertex-blend-curvature" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.blend_curvature">
-<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">blend_curvature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">alpha</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.25</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.blend_curvature" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">blend_curvature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">alpha</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.25</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.blend_curvature" title="Link to this definition">¶</a></dt>
 <dd><p>Blend the data with a curvature map depending on a transparency map.</p>
 <p>Vertex objects cannot use transparency as Volume objects. This method
 is a hack to mimic the transparency of Volume objects, blending the
@@ -47,7 +46,7 @@ <h1>cortex.dataset.Vertex.blend_curvature<a class="headerlink" href="#cortex-dat
 object, and the colormap parameters (vmin, vmax, cmap, …) of the
 original Vertex object cannot be changed later on.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>alpha</strong><span class="classifier">array of shape (n_vertices, )</span></dt><dd><p>Transparency map.</p>
 </dd>
@@ -61,7 +60,7 @@ <h1>cortex.dataset.Vertex.blend_curvature<a class="headerlink" href="#cortex-dat
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>blended</strong><span class="classifier">VertexRGB object</span></dt><dd><p>The original map blended with a curvature map.</p>
 </dd>
@@ -119,7 +118,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -127,8 +126,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -142,11 +141,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.blend_curvature.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.copy.html b/generated/Vertex/cortex.dataset.Vertex.copy.html
index 4a9f6b679..68ba785ab 100644
--- a/generated/Vertex/cortex.dataset.Vertex.copy.html
+++ b/generated/Vertex/cortex.dataset.Vertex.copy.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.copy &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
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-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.copy &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-copy">
-<h1>cortex.dataset.Vertex.copy<a class="headerlink" href="#cortex-dataset-vertex-copy" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.copy<a class="headerlink" href="#cortex-dataset-vertex-copy" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.copy">
-<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.copy" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.copy" title="Link to this definition">¶</a></dt>
 <dd><p>Return a new VertexData object for the same subject but with data
 replaced by the given <cite>data</cite>.</p>
 <p>This is useful for efficiently creating many VertexData objects, since 
@@ -96,7 +95,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -104,8 +103,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -119,11 +118,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.copy.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.data.html b/generated/Vertex/cortex.dataset.Vertex.data.html
index ddef0f6a0..f5e282c73 100644
--- a/generated/Vertex/cortex.dataset.Vertex.data.html
+++ b/generated/Vertex/cortex.dataset.Vertex.data.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-data">
-<h1>cortex.dataset.Vertex.data<a class="headerlink" href="#cortex-dataset-vertex-data" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.data<a class="headerlink" href="#cortex-dataset-vertex-data" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.data">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">data</span></span><a class="headerlink" href="#cortex.dataset.Vertex.data" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">data</span></span><a class="headerlink" href="#cortex.dataset.Vertex.data" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.data.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.empty.html b/generated/Vertex/cortex.dataset.Vertex.empty.html
index 57ad4343a..a0a9149f4 100644
--- a/generated/Vertex/cortex.dataset.Vertex.empty.html
+++ b/generated/Vertex/cortex.dataset.Vertex.empty.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.empty &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.empty &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-empty">
-<h1>cortex.dataset.Vertex.empty<a class="headerlink" href="#cortex-dataset-vertex-empty" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.empty<a class="headerlink" href="#cortex-dataset-vertex-empty" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.empty">
-<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">empty</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.empty" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">empty</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.empty" title="Link to this definition">¶</a></dt>
 <dd><p>Create a constant-valued VertexData for the given subject.
 Often useful for testing purposes.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier. Must exist in the pycortex database.</p>
 </dd>
@@ -54,7 +53,7 @@ <h1>cortex.dataset.Vertex.empty<a class="headerlink" href="#cortex-dataset-verte
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>VertexData subclass</dt><dd><p>A VertexData subclass object whose data is constant, equal to value.</p>
 </dd>
@@ -112,7 +111,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -135,11 +134,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.empty.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.exp.html b/generated/Vertex/cortex.dataset.Vertex.exp.html
index 4ac8afcb1..8a09898a0 100644
--- a/generated/Vertex/cortex.dataset.Vertex.exp.html
+++ b/generated/Vertex/cortex.dataset.Vertex.exp.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.exp &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.exp &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-exp">
-<h1>cortex.dataset.Vertex.exp<a class="headerlink" href="#cortex-dataset-vertex-exp" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.exp<a class="headerlink" href="#cortex-dataset-vertex-exp" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.exp">
-<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">exp</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.exp" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">exp</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.exp" title="Link to this definition">¶</a></dt>
 <dd><p>Return copy of this brain data with data exponentiated.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.exp.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.from_hdf.html b/generated/Vertex/cortex.dataset.Vertex.from_hdf.html
index b41b9851a..92812f4fc 100644
--- a/generated/Vertex/cortex.dataset.Vertex.from_hdf.html
+++ b/generated/Vertex/cortex.dataset.Vertex.from_hdf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.from_hdf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.from_hdf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-from-hdf">
-<h1>cortex.dataset.Vertex.from_hdf<a class="headerlink" href="#cortex-dataset-vertex-from-hdf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.from_hdf<a class="headerlink" href="#cortex-dataset-vertex-from-hdf" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.from_hdf">
-<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.from_hdf" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.from_hdf" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.from_hdf.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.get_cmapdict.html b/generated/Vertex/cortex.dataset.Vertex.get_cmapdict.html
new file mode 100644
index 000000000..a215fd0ac
--- /dev/null
+++ b/generated/Vertex/cortex.dataset.Vertex.get_cmapdict.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.get_cmapdict &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="cortex-dataset-vertex-get-cmapdict">
+<h1>cortex.dataset.Vertex.get_cmapdict<a class="headerlink" href="#cortex-dataset-vertex-get-cmapdict" title="Link to this heading">¶</a></h1>
+<dl class="py method">
+<dt class="sig sig-object py" id="cortex.dataset.Vertex.get_cmapdict">
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">get_cmapdict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.get_cmapdict" title="Link to this definition">¶</a></dt>
+<dd><p>Returns a dictionary with cmap information.</p>
+</dd></dl>
+
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
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+
+
+
+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../auto_examples/index.html">Example Gallery</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
+</ul>
+
+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  </ul></li>
+</ul>
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+<search id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
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+
+
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+
+
+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.get_cmapdict.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
+
+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/generated/Vertex/cortex.dataset.Vertex.left.html b/generated/Vertex/cortex.dataset.Vertex.left.html
index 2dce119bc..c2c5443c1 100644
--- a/generated/Vertex/cortex.dataset.Vertex.left.html
+++ b/generated/Vertex/cortex.dataset.Vertex.left.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.left &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.left &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-left">
-<h1>cortex.dataset.Vertex.left<a class="headerlink" href="#cortex-dataset-vertex-left" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.left<a class="headerlink" href="#cortex-dataset-vertex-left" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.left">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">left</span></span><a class="headerlink" href="#cortex.dataset.Vertex.left" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">left</span></span><a class="headerlink" href="#cortex.dataset.Vertex.left" title="Link to this definition">¶</a></dt>
 <dd><p>Data for only the left hemisphere vertices.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.left.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.map.html b/generated/Vertex/cortex.dataset.Vertex.map.html
index 2f9c2127a..1cb43e890 100644
--- a/generated/Vertex/cortex.dataset.Vertex.map.html
+++ b/generated/Vertex/cortex.dataset.Vertex.map.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.map &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.map &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-map">
-<h1>cortex.dataset.Vertex.map<a class="headerlink" href="#cortex-dataset-vertex-map" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.map<a class="headerlink" href="#cortex-dataset-vertex-map" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.map">
-<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">map</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target_subj</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surface_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'fiducial'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fs_subj</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/views.html#Vertex.map"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex.map" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">map</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target_subj</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surface_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'fiducial'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'both'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fs_subj</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/views.html#Vertex.map"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex.map" title="Link to this definition">¶</a></dt>
 <dd><p>Map this data from this surface to another surface</p>
 <p>Calls <cite>cortex.freesurfer.vertex_to_vertex()</cite>  with this 
 vertex object as the first argument.</p>
@@ -47,13 +46,13 @@ <h1>cortex.dataset.Vertex.map<a class="headerlink" href="#cortex-dataset-vertex-
 (with <cite>cortex.db.get_mri_surf2surf_matrix</cite>) or active 
 freesurfer environment.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>target_subj</strong><span class="classifier">str</span></dt><dd><p>freesurfer subject to which to map</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Other Parameters</dt>
+<dt class="field-even">Other Parameters<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>kwargs map to `cortex.freesurfer.vertex_to_vertex()`</strong></dt><dd></dd>
 </dl>
@@ -110,7 +109,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -118,8 +117,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -133,11 +132,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.map.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.name.html b/generated/Vertex/cortex.dataset.Vertex.name.html
index 1e3c36788..105b0ed87 100644
--- a/generated/Vertex/cortex.dataset.Vertex.name.html
+++ b/generated/Vertex/cortex.dataset.Vertex.name.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.name &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.name &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-name">
-<h1>cortex.dataset.Vertex.name<a class="headerlink" href="#cortex-dataset-vertex-name" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.name<a class="headerlink" href="#cortex-dataset-vertex-name" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.name">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#cortex.dataset.Vertex.name" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#cortex.dataset.Vertex.name" title="Link to this definition">¶</a></dt>
 <dd><p>Name of this BrainData, computed from hash of data.
 TODO:WHAT IS THIS USEFUL FOR</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.name.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.priority.html b/generated/Vertex/cortex.dataset.Vertex.priority.html
index 76cebee9d..3c9f5292f 100644
--- a/generated/Vertex/cortex.dataset.Vertex.priority.html
+++ b/generated/Vertex/cortex.dataset.Vertex.priority.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.priority &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.priority &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-priority">
-<h1>cortex.dataset.Vertex.priority<a class="headerlink" href="#cortex-dataset-vertex-priority" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.priority<a class="headerlink" href="#cortex-dataset-vertex-priority" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.priority">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.Vertex.priority" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.Vertex.priority" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.priority.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.random.html b/generated/Vertex/cortex.dataset.Vertex.random.html
index c1683d9f5..5187cc511 100644
--- a/generated/Vertex/cortex.dataset.Vertex.random.html
+++ b/generated/Vertex/cortex.dataset.Vertex.random.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.random &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.random &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-random">
-<h1>cortex.dataset.Vertex.random<a class="headerlink" href="#cortex-dataset-vertex-random" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.random<a class="headerlink" href="#cortex-dataset-vertex-random" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.random">
-<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">random</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.random" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">random</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.random" title="Link to this definition">¶</a></dt>
 <dd><p>Create a random-valued VertexData for the given subject.
 Random values are from gaussian distribution with mean 0, s.d. 1.
 Often useful for testing purposes.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier. Must exist in the pycortex database.</p>
 </dd>
@@ -53,7 +52,7 @@ <h1>cortex.dataset.Vertex.random<a class="headerlink" href="#cortex-dataset-vert
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>VertexData subclass</dt><dd><p>A VertexData subclass object with random data.</p>
 </dd>
@@ -111,7 +110,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -119,8 +118,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -134,11 +133,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.random.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.raw.html b/generated/Vertex/cortex.dataset.Vertex.raw.html
index 5608b23f1..aff2d3285 100644
--- a/generated/Vertex/cortex.dataset.Vertex.raw.html
+++ b/generated/Vertex/cortex.dataset.Vertex.raw.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.raw &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.raw &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-raw">
-<h1>cortex.dataset.Vertex.raw<a class="headerlink" href="#cortex-dataset-vertex-raw" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.raw<a class="headerlink" href="#cortex-dataset-vertex-raw" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.raw">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.Vertex.raw" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.Vertex.raw" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.raw.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.right.html b/generated/Vertex/cortex.dataset.Vertex.right.html
index cd77b7461..828e9f1e7 100644
--- a/generated/Vertex/cortex.dataset.Vertex.right.html
+++ b/generated/Vertex/cortex.dataset.Vertex.right.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.right &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.right &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-right">
-<h1>cortex.dataset.Vertex.right<a class="headerlink" href="#cortex-dataset-vertex-right" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.right<a class="headerlink" href="#cortex-dataset-vertex-right" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.right">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">right</span></span><a class="headerlink" href="#cortex.dataset.Vertex.right" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">right</span></span><a class="headerlink" href="#cortex.dataset.Vertex.right" title="Link to this definition">¶</a></dt>
 <dd><p>Data for only the right hemisphere vertices.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.right.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.to_json.html b/generated/Vertex/cortex.dataset.Vertex.to_json.html
index 6a4bb676e..6ce73c670 100644
--- a/generated/Vertex/cortex.dataset.Vertex.to_json.html
+++ b/generated/Vertex/cortex.dataset.Vertex.to_json.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.to_json &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.to_json &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-to-json">
-<h1>cortex.dataset.Vertex.to_json<a class="headerlink" href="#cortex-dataset-vertex-to-json" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.to_json<a class="headerlink" href="#cortex-dataset-vertex-to-json" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.to_json">
-<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.to_json" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.to_json" title="Link to this definition">¶</a></dt>
 <dd><p>Creates JSON description of this brain data.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.to_json.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.uniques.html b/generated/Vertex/cortex.dataset.Vertex.uniques.html
index ca1301c97..9b0c8c58e 100644
--- a/generated/Vertex/cortex.dataset.Vertex.uniques.html
+++ b/generated/Vertex/cortex.dataset.Vertex.uniques.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.uniques &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.uniques &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-uniques">
-<h1>cortex.dataset.Vertex.uniques<a class="headerlink" href="#cortex-dataset-vertex-uniques" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.uniques<a class="headerlink" href="#cortex-dataset-vertex-uniques" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.uniques">
-<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.uniques" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.uniques" title="Link to this definition">¶</a></dt>
 <dd><p>TODO: WHAT IS THIS</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.uniques.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.vertices.html b/generated/Vertex/cortex.dataset.Vertex.vertices.html
index 612e6b5d1..435d2cbab 100644
--- a/generated/Vertex/cortex.dataset.Vertex.vertices.html
+++ b/generated/Vertex/cortex.dataset.Vertex.vertices.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.vertices &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.vertices &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-vertices">
-<h1>cortex.dataset.Vertex.vertices<a class="headerlink" href="#cortex-dataset-vertex-vertices" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.vertices<a class="headerlink" href="#cortex-dataset-vertex-vertices" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.vertices">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">vertices</span></span><a class="headerlink" href="#cortex.dataset.Vertex.vertices" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">vertices</span></span><a class="headerlink" href="#cortex.dataset.Vertex.vertices" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.vertices.rst.txt"
diff --git a/generated/Vertex/cortex.dataset.Vertex.volume.html b/generated/Vertex/cortex.dataset.Vertex.volume.html
index 8888340b7..93a109152 100644
--- a/generated/Vertex/cortex.dataset.Vertex.volume.html
+++ b/generated/Vertex/cortex.dataset.Vertex.volume.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex.volume &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex.volume &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex-volume">
-<h1>cortex.dataset.Vertex.volume<a class="headerlink" href="#cortex-dataset-vertex-volume" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex.volume<a class="headerlink" href="#cortex-dataset-vertex-volume" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex.volume">
-<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">volume</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">projection</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.volume" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex.</span></span><span class="sig-name descname"><span class="pre">volume</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">projection</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex.volume" title="Link to this definition">¶</a></dt>
 <dd><p>Map this VertexData back to volume space, creating a VolumeData object.
 This uses the <cite>mapper.backwards</cite> function, which is not particularly
 accurate.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>xfmname</strong><span class="classifier">str</span></dt><dd><p>Transform name for the volume space that this vertex data will be 
 projected into. Must exist in the pycortex database.</p>
@@ -56,7 +55,7 @@ <h1>cortex.dataset.Vertex.volume<a class="headerlink" href="#cortex-dataset-vert
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>VolumeData</dt><dd><p>Volume containing the back-projected vertex data.</p>
 </dd>
@@ -114,7 +113,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -122,8 +121,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -137,11 +136,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex/cortex.dataset.Vertex.volume.rst.txt"
diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.__init__.html b/generated/Vertex2D/cortex.dataset.Vertex2D.__init__.html
index 3ac300d8d..99634579b 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.__init__.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-init">
-<h1>cortex.dataset.Vertex2D.__init__<a class="headerlink" href="#cortex-dataset-vertex2d-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.__init__<a class="headerlink" href="#cortex-dataset-vertex2d-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.__init__">
-<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/view2D.html#Vertex2D.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex2D.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/view2D.html#Vertex2D.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex2D.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex2D/cortex.dataset.Vertex2D.__init__.rst.txt"
diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.blend_curvature.html b/generated/Vertex2D/cortex.dataset.Vertex2D.blend_curvature.html
index 27b84a442..9be6798e2 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.blend_curvature.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.blend_curvature.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.blend_curvature &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
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-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.blend_curvature &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-blend-curvature">
-<h1>cortex.dataset.Vertex2D.blend_curvature<a class="headerlink" href="#cortex-dataset-vertex2d-blend-curvature" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.blend_curvature<a class="headerlink" href="#cortex-dataset-vertex2d-blend-curvature" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.blend_curvature">
-<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">blend_curvature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">alpha</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.25</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.blend_curvature" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">blend_curvature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">alpha</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.25</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.blend_curvature" title="Link to this definition">¶</a></dt>
 <dd><p>Blend the data with a curvature map depending on a transparency map.</p>
 <p>Vertex objects cannot use transparency as Volume objects. This method
 is a hack to mimic the transparency of Volume objects, blending the
@@ -47,7 +46,7 @@ <h1>cortex.dataset.Vertex2D.blend_curvature<a class="headerlink" href="#cortex-d
 object, and the colormap parameters (vmin, vmax, cmap, …) of the
 original Vertex object cannot be changed later on.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>alpha</strong><span class="classifier">array of shape (n_vertices, )</span></dt><dd><p>Transparency map.</p>
 </dd>
@@ -61,7 +60,7 @@ <h1>cortex.dataset.Vertex2D.blend_curvature<a class="headerlink" href="#cortex-d
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>blended</strong><span class="classifier">VertexRGB object</span></dt><dd><p>The original map blended with a curvature map.</p>
 </dd>
@@ -119,7 +118,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -127,8 +126,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -142,11 +141,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex2D/cortex.dataset.Vertex2D.blend_curvature.rst.txt"
diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.copy.html b/generated/Vertex2D/cortex.dataset.Vertex2D.copy.html
index 818a461ce..fa44c57ee 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.copy.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.copy.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.copy &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.copy &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-copy">
-<h1>cortex.dataset.Vertex2D.copy<a class="headerlink" href="#cortex-dataset-vertex2d-copy" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.copy<a class="headerlink" href="#cortex-dataset-vertex2d-copy" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.copy">
-<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.copy" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.copy" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex2D/cortex.dataset.Vertex2D.copy.rst.txt"
diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.from_hdf.html b/generated/Vertex2D/cortex.dataset.Vertex2D.from_hdf.html
index 612289777..03a821268 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.from_hdf.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.from_hdf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.from_hdf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.from_hdf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-from-hdf">
-<h1>cortex.dataset.Vertex2D.from_hdf<a class="headerlink" href="#cortex-dataset-vertex2d-from-hdf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.from_hdf<a class="headerlink" href="#cortex-dataset-vertex2d-from-hdf" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.from_hdf">
-<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.from_hdf" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.from_hdf" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
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-</div>
-<script>$('#searchbox').show(0);</script>
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+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex2D/cortex.dataset.Vertex2D.from_hdf.rst.txt"
diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.html b/generated/Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.html
new file mode 100644
index 000000000..0d7c4f746
--- /dev/null
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.get_cmapdict &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
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+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="cortex-dataset-vertex2d-get-cmapdict">
+<h1>cortex.dataset.Vertex2D.get_cmapdict<a class="headerlink" href="#cortex-dataset-vertex2d-get-cmapdict" title="Link to this heading">¶</a></h1>
+<dl class="py method">
+<dt class="sig sig-object py" id="cortex.dataset.Vertex2D.get_cmapdict">
+<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">get_cmapdict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.get_cmapdict" title="Link to this definition">¶</a></dt>
+<dd><p>Returns a dictionary with cmap information.</p>
+</dd></dl>
+
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
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+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
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+<li class="toctree-l1"><a class="reference internal" href="../../auto_examples/index.html">Example Gallery</a></li>
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+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
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+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
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+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
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+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/generated/Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.rst.txt"
+          rel="nofollow">Page source</a>
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\ No newline at end of file
diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.priority.html b/generated/Vertex2D/cortex.dataset.Vertex2D.priority.html
index b90fd33bb..d124af9f3 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.priority.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.priority.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.priority &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.priority &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-priority">
-<h1>cortex.dataset.Vertex2D.priority<a class="headerlink" href="#cortex-dataset-vertex2d-priority" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.priority<a class="headerlink" href="#cortex-dataset-vertex2d-priority" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.priority">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.Vertex2D.priority" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.Vertex2D.priority" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
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diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.raw.html b/generated/Vertex2D/cortex.dataset.Vertex2D.raw.html
index 468ee83fc..92015cff4 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.raw.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.raw.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.raw &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.raw &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-raw">
-<h1>cortex.dataset.Vertex2D.raw<a class="headerlink" href="#cortex-dataset-vertex2d-raw" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.raw<a class="headerlink" href="#cortex-dataset-vertex2d-raw" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.raw">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.Vertex2D.raw" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.Vertex2D.raw" title="Link to this definition">¶</a></dt>
 <dd><p>VertexRGB object containing the colormapped data from this object.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
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diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.subject.html b/generated/Vertex2D/cortex.dataset.Vertex2D.subject.html
index 65d133ff6..9f5a16a48 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.subject.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.subject.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.subject &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.subject &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-subject">
-<h1>cortex.dataset.Vertex2D.subject<a class="headerlink" href="#cortex-dataset-vertex2d-subject" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.subject<a class="headerlink" href="#cortex-dataset-vertex2d-subject" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.subject">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">subject</span></span><a class="headerlink" href="#cortex.dataset.Vertex2D.subject" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">subject</span></span><a class="headerlink" href="#cortex.dataset.Vertex2D.subject" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
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diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.to_json.html b/generated/Vertex2D/cortex.dataset.Vertex2D.to_json.html
index d9a9a14e0..3f0bca3ef 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.to_json.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.to_json.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.to_json &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.to_json &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-to-json">
-<h1>cortex.dataset.Vertex2D.to_json<a class="headerlink" href="#cortex-dataset-vertex2d-to-json" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.to_json<a class="headerlink" href="#cortex-dataset-vertex2d-to-json" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.to_json">
-<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.to_json" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.to_json" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex2D/cortex.dataset.Vertex2D.to_json.rst.txt"
diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.uniques.html b/generated/Vertex2D/cortex.dataset.Vertex2D.uniques.html
index 9cccffb4e..930afa9fb 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.uniques.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.uniques.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.uniques &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.uniques &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-uniques">
-<h1>cortex.dataset.Vertex2D.uniques<a class="headerlink" href="#cortex-dataset-vertex2d-uniques" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.uniques<a class="headerlink" href="#cortex-dataset-vertex2d-uniques" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.uniques">
-<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.uniques" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Vertex2D.uniques" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex2D/cortex.dataset.Vertex2D.uniques.rst.txt"
diff --git a/generated/Vertex2D/cortex.dataset.Vertex2D.vertices.html b/generated/Vertex2D/cortex.dataset.Vertex2D.vertices.html
index c8b8254e4..e659264a8 100644
--- a/generated/Vertex2D/cortex.dataset.Vertex2D.vertices.html
+++ b/generated/Vertex2D/cortex.dataset.Vertex2D.vertices.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D.vertices &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D.vertices &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d-vertices">
-<h1>cortex.dataset.Vertex2D.vertices<a class="headerlink" href="#cortex-dataset-vertex2d-vertices" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D.vertices<a class="headerlink" href="#cortex-dataset-vertex2d-vertices" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D.vertices">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">vertices</span></span><a class="headerlink" href="#cortex.dataset.Vertex2D.vertices" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Vertex2D.</span></span><span class="sig-name descname"><span class="pre">vertices</span></span><a class="headerlink" href="#cortex.dataset.Vertex2D.vertices" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Vertex2D/cortex.dataset.Vertex2D.vertices.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.__init__.html b/generated/VertexRGB/cortex.dataset.VertexRGB.__init__.html
index e0f7f3976..addfec4c1 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.__init__.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-init">
-<h1>cortex.dataset.VertexRGB.__init__<a class="headerlink" href="#cortex-dataset-vertexrgb-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.__init__<a class="headerlink" href="#cortex-dataset-vertexrgb-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.__init__">
-<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">red</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">green</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">blue</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VertexRGB.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VertexRGB.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">red</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">green</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">blue</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VertexRGB.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VertexRGB.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.__init__.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.alpha.html b/generated/VertexRGB/cortex.dataset.VertexRGB.alpha.html
new file mode 100644
index 000000000..d314701e7
--- /dev/null
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.alpha.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.alpha &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="cortex-dataset-vertexrgb-alpha">
+<h1>cortex.dataset.VertexRGB.alpha<a class="headerlink" href="#cortex-dataset-vertexrgb-alpha" title="Link to this heading">¶</a></h1>
+<dl class="py property">
+<dt class="sig sig-object py" id="cortex.dataset.VertexRGB.alpha">
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">alpha</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.alpha" title="Link to this definition">¶</a></dt>
+<dd><p>Compute alpha transparency</p>
+</dd></dl>
+
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
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+
+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../auto_examples/index.html">Example Gallery</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
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+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  </ul></li>
+</ul>
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+<search id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
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+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.alpha.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
+
+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.blend_curvature.html b/generated/VertexRGB/cortex.dataset.VertexRGB.blend_curvature.html
index 5754a5dad..7b8a72958 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.blend_curvature.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.blend_curvature.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.blend_curvature &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.blend_curvature &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-blend-curvature">
-<h1>cortex.dataset.VertexRGB.blend_curvature<a class="headerlink" href="#cortex-dataset-vertexrgb-blend-curvature" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.blend_curvature<a class="headerlink" href="#cortex-dataset-vertexrgb-blend-curvature" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.blend_curvature">
-<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">blend_curvature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">alpha</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.25</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.blend_curvature" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">blend_curvature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">alpha</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.25</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.blend_curvature" title="Link to this definition">¶</a></dt>
 <dd><p>Blend the data with a curvature map depending on a transparency map.</p>
 <p>Vertex objects cannot use transparency as Volume objects. This method
 is a hack to mimic the transparency of Volume objects, blending the
@@ -47,7 +46,7 @@ <h1>cortex.dataset.VertexRGB.blend_curvature<a class="headerlink" href="#cortex-
 object, and the colormap parameters (vmin, vmax, cmap, …) of the
 original Vertex object cannot be changed later on.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>alpha</strong><span class="classifier">array of shape (n_vertices, )</span></dt><dd><p>Transparency map.</p>
 </dd>
@@ -61,7 +60,7 @@ <h1>cortex.dataset.VertexRGB.blend_curvature<a class="headerlink" href="#cortex-
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>blended</strong><span class="classifier">VertexRGB object</span></dt><dd><p>The original map blended with a curvature map.</p>
 </dd>
@@ -119,7 +118,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -127,8 +126,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -142,11 +141,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.blend_curvature.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.copy.html b/generated/VertexRGB/cortex.dataset.VertexRGB.copy.html
index cc53958b4..cd7de89bb 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.copy.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.copy.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.copy &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.copy &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-copy">
-<h1>cortex.dataset.VertexRGB.copy<a class="headerlink" href="#cortex-dataset-vertexrgb-copy" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.copy<a class="headerlink" href="#cortex-dataset-vertexrgb-copy" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.copy">
-<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.copy" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.copy" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.copy.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.from_hdf.html b/generated/VertexRGB/cortex.dataset.VertexRGB.from_hdf.html
index 9452e22b9..010b70ac9 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.from_hdf.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.from_hdf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.from_hdf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.from_hdf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-from-hdf">
-<h1>cortex.dataset.VertexRGB.from_hdf<a class="headerlink" href="#cortex-dataset-vertexrgb-from-hdf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.from_hdf<a class="headerlink" href="#cortex-dataset-vertexrgb-from-hdf" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.from_hdf">
-<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.from_hdf" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.from_hdf" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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-</div>
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@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.from_hdf.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.html b/generated/VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.html
new file mode 100644
index 000000000..ff81be3b2
--- /dev/null
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.get_cmapdict &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+            
+  <section id="cortex-dataset-vertexrgb-get-cmapdict">
+<h1>cortex.dataset.VertexRGB.get_cmapdict<a class="headerlink" href="#cortex-dataset-vertexrgb-get-cmapdict" title="Link to this heading">¶</a></h1>
+<dl class="py method">
+<dt class="sig sig-object py" id="cortex.dataset.VertexRGB.get_cmapdict">
+<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">get_cmapdict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.get_cmapdict" title="Link to this definition">¶</a></dt>
+<dd><p>Returns a dictionary with cmap information.</p>
+</dd></dl>
+
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
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+<div class="relations">
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+    <div class="footer">
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+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.rst.txt"
+          rel="nofollow">Page source</a>
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+  </body>
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\ No newline at end of file
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.left.html b/generated/VertexRGB/cortex.dataset.VertexRGB.left.html
index 4c713737b..7d27d3451 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.left.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.left.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.left &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.left &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-left">
-<h1>cortex.dataset.VertexRGB.left<a class="headerlink" href="#cortex-dataset-vertexrgb-left" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.left<a class="headerlink" href="#cortex-dataset-vertexrgb-left" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.left">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">left</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.left" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">left</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.left" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.left.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.name.html b/generated/VertexRGB/cortex.dataset.VertexRGB.name.html
index 94f99a48e..fc999ca03 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.name.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.name.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.name &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.name &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-name">
-<h1>cortex.dataset.VertexRGB.name<a class="headerlink" href="#cortex-dataset-vertexrgb-name" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.name<a class="headerlink" href="#cortex-dataset-vertexrgb-name" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.name">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.name" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.name" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.name.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.priority.html b/generated/VertexRGB/cortex.dataset.VertexRGB.priority.html
index d924c860a..37854da5a 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.priority.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.priority.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.priority &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.priority &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-priority">
-<h1>cortex.dataset.VertexRGB.priority<a class="headerlink" href="#cortex-dataset-vertexrgb-priority" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.priority<a class="headerlink" href="#cortex-dataset-vertexrgb-priority" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.priority">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.priority" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.priority" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.priority.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.raw.html b/generated/VertexRGB/cortex.dataset.VertexRGB.raw.html
index c45366c00..212c3d7f4 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.raw.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.raw.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.raw &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.raw &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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     <link rel="search" title="Search" href="../../search.html" />
    
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-raw">
-<h1>cortex.dataset.VertexRGB.raw<a class="headerlink" href="#cortex-dataset-vertexrgb-raw" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.raw<a class="headerlink" href="#cortex-dataset-vertexrgb-raw" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.raw">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.raw" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.raw" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
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     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
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diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.right.html b/generated/VertexRGB/cortex.dataset.VertexRGB.right.html
index a88158519..5763d0c20 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.right.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.right.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.right &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.right &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-right">
-<h1>cortex.dataset.VertexRGB.right<a class="headerlink" href="#cortex-dataset-vertexrgb-right" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.right<a class="headerlink" href="#cortex-dataset-vertexrgb-right" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.right">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">right</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.right" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">right</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.right" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.right.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.to_json.html b/generated/VertexRGB/cortex.dataset.VertexRGB.to_json.html
index b9f58279d..9ca74ae37 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.to_json.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.to_json.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.to_json &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.to_json &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-to-json">
-<h1>cortex.dataset.VertexRGB.to_json<a class="headerlink" href="#cortex-dataset-vertexrgb-to-json" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.to_json<a class="headerlink" href="#cortex-dataset-vertexrgb-to-json" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.to_json">
-<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VertexRGB.to_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VertexRGB.to_json" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VertexRGB.to_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VertexRGB.to_json" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.to_json.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.uniques.html b/generated/VertexRGB/cortex.dataset.VertexRGB.uniques.html
index a06b4a69b..d249af1b1 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.uniques.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.uniques.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.uniques &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.uniques &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-uniques">
-<h1>cortex.dataset.VertexRGB.uniques<a class="headerlink" href="#cortex-dataset-vertexrgb-uniques" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.uniques<a class="headerlink" href="#cortex-dataset-vertexrgb-uniques" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.uniques">
-<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.uniques" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VertexRGB.uniques" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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-</div>
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+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.uniques.rst.txt"
diff --git a/generated/VertexRGB/cortex.dataset.VertexRGB.vertices.html b/generated/VertexRGB/cortex.dataset.VertexRGB.vertices.html
index f5de8f5aa..a57aa4a45 100644
--- a/generated/VertexRGB/cortex.dataset.VertexRGB.vertices.html
+++ b/generated/VertexRGB/cortex.dataset.VertexRGB.vertices.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB.vertices &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB.vertices &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb-vertices">
-<h1>cortex.dataset.VertexRGB.vertices<a class="headerlink" href="#cortex-dataset-vertexrgb-vertices" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB.vertices<a class="headerlink" href="#cortex-dataset-vertexrgb-vertices" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB.vertices">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">vertices</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.vertices" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VertexRGB.</span></span><span class="sig-name descname"><span class="pre">vertices</span></span><a class="headerlink" href="#cortex.dataset.VertexRGB.vertices" title="Link to this definition">¶</a></dt>
 <dd><p>3-dimensional volume (t, v, rgba) with data that has been mapped
 into 8-bit unsigned integers that correspond to colors.</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
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+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VertexRGB/cortex.dataset.VertexRGB.vertices.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.__init__.html b/generated/Volume/cortex.dataset.Volume.__init__.html
index 6b2291bd3..2b25117e2 100644
--- a/generated/Volume/cortex.dataset.Volume.__init__.html
+++ b/generated/Volume/cortex.dataset.Volume.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-init">
-<h1>cortex.dataset.Volume.__init__<a class="headerlink" href="#cortex-dataset-volume-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.__init__<a class="headerlink" href="#cortex-dataset-volume-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.__init__">
-<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/views.html#Volume.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Volume.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/views.html#Volume.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Volume.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.__init__.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.copy.html b/generated/Volume/cortex.dataset.Volume.copy.html
index cc2ed4ff7..127324a2b 100644
--- a/generated/Volume/cortex.dataset.Volume.copy.html
+++ b/generated/Volume/cortex.dataset.Volume.copy.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.copy &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.copy &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-copy">
-<h1>cortex.dataset.Volume.copy<a class="headerlink" href="#cortex-dataset-volume-copy" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.copy<a class="headerlink" href="#cortex-dataset-volume-copy" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.copy">
-<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.copy" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.copy" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.copy.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.data.html b/generated/Volume/cortex.dataset.Volume.data.html
index 2e97093ac..4ef24af98 100644
--- a/generated/Volume/cortex.dataset.Volume.data.html
+++ b/generated/Volume/cortex.dataset.Volume.data.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.data &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.data &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-data">
-<h1>cortex.dataset.Volume.data<a class="headerlink" href="#cortex-dataset-volume-data" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.data<a class="headerlink" href="#cortex-dataset-volume-data" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.data">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">data</span></span><a class="headerlink" href="#cortex.dataset.Volume.data" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">data</span></span><a class="headerlink" href="#cortex.dataset.Volume.data" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.data.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.empty.html b/generated/Volume/cortex.dataset.Volume.empty.html
index d82c4b08a..542ff1f07 100644
--- a/generated/Volume/cortex.dataset.Volume.empty.html
+++ b/generated/Volume/cortex.dataset.Volume.empty.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.empty &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.empty &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-empty">
-<h1>cortex.dataset.Volume.empty<a class="headerlink" href="#cortex-dataset-volume-empty" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.empty<a class="headerlink" href="#cortex-dataset-volume-empty" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.empty">
-<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">empty</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.empty" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">empty</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.empty" title="Link to this definition">¶</a></dt>
 <dd><p>Create a constant-valued VolumeData for the given subject and xfmname.
 Often useful for testing purposes.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier. Must exist in the pycortex database.</p>
 </dd>
@@ -56,7 +55,7 @@ <h1>cortex.dataset.Volume.empty<a class="headerlink" href="#cortex-dataset-volum
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>VolumeData subclass</dt><dd><p>A VolumeData subclass object whose data is constant, equal to value.</p>
 </dd>
@@ -114,7 +113,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -122,8 +121,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -137,11 +136,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.empty.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.exp.html b/generated/Volume/cortex.dataset.Volume.exp.html
index 452fa4556..37c51603e 100644
--- a/generated/Volume/cortex.dataset.Volume.exp.html
+++ b/generated/Volume/cortex.dataset.Volume.exp.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.exp &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.exp &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-exp">
-<h1>cortex.dataset.Volume.exp<a class="headerlink" href="#cortex-dataset-volume-exp" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.exp<a class="headerlink" href="#cortex-dataset-volume-exp" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.exp">
-<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">exp</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.exp" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">exp</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.exp" title="Link to this definition">¶</a></dt>
 <dd><p>Return copy of this brain data with data exponentiated.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.exp.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.from_hdf.html b/generated/Volume/cortex.dataset.Volume.from_hdf.html
index 842b446a4..665849bc0 100644
--- a/generated/Volume/cortex.dataset.Volume.from_hdf.html
+++ b/generated/Volume/cortex.dataset.Volume.from_hdf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.from_hdf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.from_hdf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-from-hdf">
-<h1>cortex.dataset.Volume.from_hdf<a class="headerlink" href="#cortex-dataset-volume-from-hdf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.from_hdf<a class="headerlink" href="#cortex-dataset-volume-from-hdf" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.from_hdf">
-<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.from_hdf" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.from_hdf" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.from_hdf.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.get_cmapdict.html b/generated/Volume/cortex.dataset.Volume.get_cmapdict.html
new file mode 100644
index 000000000..577562658
--- /dev/null
+++ b/generated/Volume/cortex.dataset.Volume.get_cmapdict.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.get_cmapdict &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="search" title="Search" href="../../search.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="cortex-dataset-volume-get-cmapdict">
+<h1>cortex.dataset.Volume.get_cmapdict<a class="headerlink" href="#cortex-dataset-volume-get-cmapdict" title="Link to this heading">¶</a></h1>
+<dl class="py method">
+<dt class="sig sig-object py" id="cortex.dataset.Volume.get_cmapdict">
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">get_cmapdict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.get_cmapdict" title="Link to this definition">¶</a></dt>
+<dd><p>Returns a dictionary with cmap information.</p>
+</dd></dl>
+
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
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+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
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+
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+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
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+    <div class="searchformwrapper">
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+    <div class="footer">
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+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/generated/Volume/cortex.dataset.Volume.get_cmapdict.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
+
+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/generated/Volume/cortex.dataset.Volume.map.html b/generated/Volume/cortex.dataset.Volume.map.html
index d7401b185..afca610d6 100644
--- a/generated/Volume/cortex.dataset.Volume.map.html
+++ b/generated/Volume/cortex.dataset.Volume.map.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.map &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,20 +35,20 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-map">
-<h1>cortex.dataset.Volume.map<a class="headerlink" href="#cortex-dataset-volume-map" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.map<a class="headerlink" href="#cortex-dataset-volume-map" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.map">
-<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">map</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">projection</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.map" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">map</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">projection</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.map" title="Link to this definition">¶</a></dt>
 <dd><p>Convert this VolumeData into VertexData using the given projection 
 method.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>projection</strong><span class="classifier">str, optional</span></dt><dd><p>Type of projection to use. Default: nearest.</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>VertexData subclass</dt><dd><p>Vertex valued version of this VolumeData.</p>
 </dd>
@@ -107,7 +106,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -115,8 +114,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -130,11 +129,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.map.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.name.html b/generated/Volume/cortex.dataset.Volume.name.html
index 5a541629a..920730532 100644
--- a/generated/Volume/cortex.dataset.Volume.name.html
+++ b/generated/Volume/cortex.dataset.Volume.name.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.name &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.name &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-name">
-<h1>cortex.dataset.Volume.name<a class="headerlink" href="#cortex-dataset-volume-name" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.name<a class="headerlink" href="#cortex-dataset-volume-name" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.name">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#cortex.dataset.Volume.name" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#cortex.dataset.Volume.name" title="Link to this definition">¶</a></dt>
 <dd><p>Name of this BrainData, computed from hash of data.
 TODO:WHAT IS THIS USEFUL FOR</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.name.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.priority.html b/generated/Volume/cortex.dataset.Volume.priority.html
index ea4e22e8f..c5fc141e5 100644
--- a/generated/Volume/cortex.dataset.Volume.priority.html
+++ b/generated/Volume/cortex.dataset.Volume.priority.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.priority &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.priority &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-priority">
-<h1>cortex.dataset.Volume.priority<a class="headerlink" href="#cortex-dataset-volume-priority" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.priority<a class="headerlink" href="#cortex-dataset-volume-priority" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.priority">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.Volume.priority" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.Volume.priority" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.priority.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.random.html b/generated/Volume/cortex.dataset.Volume.random.html
index 44882f724..702bfa178 100644
--- a/generated/Volume/cortex.dataset.Volume.random.html
+++ b/generated/Volume/cortex.dataset.Volume.random.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.random &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.random &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-random">
-<h1>cortex.dataset.Volume.random<a class="headerlink" href="#cortex-dataset-volume-random" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.random<a class="headerlink" href="#cortex-dataset-volume-random" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.random">
-<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">random</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.random" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">random</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.random" title="Link to this definition">¶</a></dt>
 <dd><p>Create a random-valued VolumeData for the given subject and xfmname.
 Random values are from gaussian distribution with mean 0, s.d. 1.
 Often useful for testing purposes.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier. Must exist in the pycortex database.</p>
 </dd>
@@ -55,7 +54,7 @@ <h1>cortex.dataset.Volume.random<a class="headerlink" href="#cortex-dataset-volu
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>VolumeData subclass</dt><dd><p>A VolumeData subclass object whose data is random.</p>
 </dd>
@@ -113,7 +112,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -121,8 +120,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -136,11 +135,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.random.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.raw.html b/generated/Volume/cortex.dataset.Volume.raw.html
index 2a29e06f0..46c9e5575 100644
--- a/generated/Volume/cortex.dataset.Volume.raw.html
+++ b/generated/Volume/cortex.dataset.Volume.raw.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.raw &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.raw &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-raw">
-<h1>cortex.dataset.Volume.raw<a class="headerlink" href="#cortex-dataset-volume-raw" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.raw<a class="headerlink" href="#cortex-dataset-volume-raw" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.raw">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.Volume.raw" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.Volume.raw" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.raw.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.save.html b/generated/Volume/cortex.dataset.Volume.save.html
index 49980e7c5..3013f0e61 100644
--- a/generated/Volume/cortex.dataset.Volume.save.html
+++ b/generated/Volume/cortex.dataset.Volume.save.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.save &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.save &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-save">
-<h1>cortex.dataset.Volume.save<a class="headerlink" href="#cortex-dataset-volume-save" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.save<a class="headerlink" href="#cortex-dataset-volume-save" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.save">
-<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">save</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.save" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">save</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.save" title="Link to this definition">¶</a></dt>
 <dd><p>Save the dataset into the hdf file <cite>filename</cite> with the provided name.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.save.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.save_nii.html b/generated/Volume/cortex.dataset.Volume.save_nii.html
index 5735293a6..20c6c5658 100644
--- a/generated/Volume/cortex.dataset.Volume.save_nii.html
+++ b/generated/Volume/cortex.dataset.Volume.save_nii.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.save_nii &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.save_nii &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-save-nii">
-<h1>cortex.dataset.Volume.save_nii<a class="headerlink" href="#cortex-dataset-volume-save-nii" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.save_nii<a class="headerlink" href="#cortex-dataset-volume-save-nii" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.save_nii">
-<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">save_nii</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.save_nii" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">save_nii</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.save_nii" title="Link to this definition">¶</a></dt>
 <dd><p>Save as a nifti file at the given filename. Nifti headers are
 copied from the reference image for this VolumeData’s transform.</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
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@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.save_nii.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.to_json.html b/generated/Volume/cortex.dataset.Volume.to_json.html
index e01be7af5..cc9116dbb 100644
--- a/generated/Volume/cortex.dataset.Volume.to_json.html
+++ b/generated/Volume/cortex.dataset.Volume.to_json.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.to_json &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.to_json &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-to-json">
-<h1>cortex.dataset.Volume.to_json<a class="headerlink" href="#cortex-dataset-volume-to-json" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.to_json<a class="headerlink" href="#cortex-dataset-volume-to-json" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.to_json">
-<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.to_json" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.to_json" title="Link to this definition">¶</a></dt>
 <dd><p>Creates JSON description of this brain data.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.to_json.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.uniques.html b/generated/Volume/cortex.dataset.Volume.uniques.html
index c5d94d45a..a088e86d1 100644
--- a/generated/Volume/cortex.dataset.Volume.uniques.html
+++ b/generated/Volume/cortex.dataset.Volume.uniques.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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-    <title>cortex.dataset.Volume.uniques &#8212; pycortex 1.2.4 documentation</title>
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
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-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.uniques &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-uniques">
-<h1>cortex.dataset.Volume.uniques<a class="headerlink" href="#cortex-dataset-volume-uniques" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.uniques<a class="headerlink" href="#cortex-dataset-volume-uniques" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.uniques">
-<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.uniques" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume.uniques" title="Link to this definition">¶</a></dt>
 <dd><p>TODO: WHAT IS THIS</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.uniques.rst.txt"
diff --git a/generated/Volume/cortex.dataset.Volume.volume.html b/generated/Volume/cortex.dataset.Volume.volume.html
index 4fdb3ef1e..a5a1c4dca 100644
--- a/generated/Volume/cortex.dataset.Volume.volume.html
+++ b/generated/Volume/cortex.dataset.Volume.volume.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume.volume &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume.volume &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume-volume">
-<h1>cortex.dataset.Volume.volume<a class="headerlink" href="#cortex-dataset-volume-volume" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume.volume<a class="headerlink" href="#cortex-dataset-volume-volume" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume.volume">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">volume</span></span><a class="headerlink" href="#cortex.dataset.Volume.volume" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume.</span></span><span class="sig-name descname"><span class="pre">volume</span></span><a class="headerlink" href="#cortex.dataset.Volume.volume" title="Link to this definition">¶</a></dt>
 <dd><p>Returns a 3D or 4D volume for this VolumeData, automatically unmasking
 masked data.</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume/cortex.dataset.Volume.volume.rst.txt"
diff --git a/generated/Volume2D/cortex.dataset.Volume2D.__init__.html b/generated/Volume2D/cortex.dataset.Volume2D.__init__.html
index 2e7bc17fe..90f7d88c7 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.__init__.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-init">
-<h1>cortex.dataset.Volume2D.__init__<a class="headerlink" href="#cortex-dataset-volume2d-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.__init__<a class="headerlink" href="#cortex-dataset-volume2d-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.__init__">
-<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/view2D.html#Volume2D.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Volume2D.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/view2D.html#Volume2D.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Volume2D.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume2D/cortex.dataset.Volume2D.__init__.rst.txt"
diff --git a/generated/Volume2D/cortex.dataset.Volume2D.copy.html b/generated/Volume2D/cortex.dataset.Volume2D.copy.html
index 99b425b3d..488747124 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.copy.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.copy.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.copy &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.copy &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-copy">
-<h1>cortex.dataset.Volume2D.copy<a class="headerlink" href="#cortex-dataset-volume2d-copy" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.copy<a class="headerlink" href="#cortex-dataset-volume2d-copy" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.copy">
-<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.copy" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.copy" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume2D/cortex.dataset.Volume2D.copy.rst.txt"
diff --git a/generated/Volume2D/cortex.dataset.Volume2D.from_hdf.html b/generated/Volume2D/cortex.dataset.Volume2D.from_hdf.html
index b028c1c0a..00f471124 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.from_hdf.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.from_hdf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.from_hdf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.from_hdf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-from-hdf">
-<h1>cortex.dataset.Volume2D.from_hdf<a class="headerlink" href="#cortex-dataset-volume2d-from-hdf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.from_hdf<a class="headerlink" href="#cortex-dataset-volume2d-from-hdf" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.from_hdf">
-<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.from_hdf" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.from_hdf" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume2D/cortex.dataset.Volume2D.from_hdf.rst.txt"
diff --git a/generated/Volume2D/cortex.dataset.Volume2D.get_cmapdict.html b/generated/Volume2D/cortex.dataset.Volume2D.get_cmapdict.html
new file mode 100644
index 000000000..84d159e4e
--- /dev/null
+++ b/generated/Volume2D/cortex.dataset.Volume2D.get_cmapdict.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.get_cmapdict &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
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+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="cortex-dataset-volume2d-get-cmapdict">
+<h1>cortex.dataset.Volume2D.get_cmapdict<a class="headerlink" href="#cortex-dataset-volume2d-get-cmapdict" title="Link to this heading">¶</a></h1>
+<dl class="py method">
+<dt class="sig sig-object py" id="cortex.dataset.Volume2D.get_cmapdict">
+<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">get_cmapdict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.get_cmapdict" title="Link to this definition">¶</a></dt>
+<dd><p>Returns a dictionary with cmap information.</p>
+</dd></dl>
+
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
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+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../auto_examples/index.html">Example Gallery</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
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+<div class="relations">
+<h3>Related Topics</h3>
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+  <li><a href="../../index.html">Documentation overview</a><ul>
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+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
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+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
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+
+        </div>
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+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/generated/Volume2D/cortex.dataset.Volume2D.get_cmapdict.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
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+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/generated/Volume2D/cortex.dataset.Volume2D.priority.html b/generated/Volume2D/cortex.dataset.Volume2D.priority.html
index 77c14f038..e3be43474 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.priority.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.priority.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.priority &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.priority &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-priority">
-<h1>cortex.dataset.Volume2D.priority<a class="headerlink" href="#cortex-dataset-volume2d-priority" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.priority<a class="headerlink" href="#cortex-dataset-volume2d-priority" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.priority">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.Volume2D.priority" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.Volume2D.priority" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume2D/cortex.dataset.Volume2D.priority.rst.txt"
diff --git a/generated/Volume2D/cortex.dataset.Volume2D.raw.html b/generated/Volume2D/cortex.dataset.Volume2D.raw.html
index 0b87eb2c2..083228411 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.raw.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.raw.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.raw &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.raw &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-raw">
-<h1>cortex.dataset.Volume2D.raw<a class="headerlink" href="#cortex-dataset-volume2d-raw" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.raw<a class="headerlink" href="#cortex-dataset-volume2d-raw" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.raw">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.Volume2D.raw" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.Volume2D.raw" title="Link to this definition">¶</a></dt>
 <dd><p>VolumeRGB object containing the colormapped data from this object.</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
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diff --git a/generated/Volume2D/cortex.dataset.Volume2D.subject.html b/generated/Volume2D/cortex.dataset.Volume2D.subject.html
index 487a05c51..96580d535 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.subject.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.subject.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.subject &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.subject &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-subject">
-<h1>cortex.dataset.Volume2D.subject<a class="headerlink" href="#cortex-dataset-volume2d-subject" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.subject<a class="headerlink" href="#cortex-dataset-volume2d-subject" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.subject">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">subject</span></span><a class="headerlink" href="#cortex.dataset.Volume2D.subject" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">subject</span></span><a class="headerlink" href="#cortex.dataset.Volume2D.subject" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
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diff --git a/generated/Volume2D/cortex.dataset.Volume2D.to_json.html b/generated/Volume2D/cortex.dataset.Volume2D.to_json.html
index 1c2ab85bd..fa12c9841 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.to_json.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.to_json.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.to_json &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.to_json &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-to-json">
-<h1>cortex.dataset.Volume2D.to_json<a class="headerlink" href="#cortex-dataset-volume2d-to-json" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.to_json<a class="headerlink" href="#cortex-dataset-volume2d-to-json" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.to_json">
-<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.to_json" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.to_json" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
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diff --git a/generated/Volume2D/cortex.dataset.Volume2D.uniques.html b/generated/Volume2D/cortex.dataset.Volume2D.uniques.html
index 0a4d9a2cd..d2bdb0257 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.uniques.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.uniques.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.uniques &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.uniques &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-uniques">
-<h1>cortex.dataset.Volume2D.uniques<a class="headerlink" href="#cortex-dataset-volume2d-uniques" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.uniques<a class="headerlink" href="#cortex-dataset-volume2d-uniques" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.uniques">
-<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.uniques" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.Volume2D.uniques" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume2D/cortex.dataset.Volume2D.uniques.rst.txt"
diff --git a/generated/Volume2D/cortex.dataset.Volume2D.xfmname.html b/generated/Volume2D/cortex.dataset.Volume2D.xfmname.html
index 590b9e667..3965e5e9d 100644
--- a/generated/Volume2D/cortex.dataset.Volume2D.xfmname.html
+++ b/generated/Volume2D/cortex.dataset.Volume2D.xfmname.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D.xfmname &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D.xfmname &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d-xfmname">
-<h1>cortex.dataset.Volume2D.xfmname<a class="headerlink" href="#cortex-dataset-volume2d-xfmname" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D.xfmname<a class="headerlink" href="#cortex-dataset-volume2d-xfmname" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D.xfmname">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">xfmname</span></span><a class="headerlink" href="#cortex.dataset.Volume2D.xfmname" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">Volume2D.</span></span><span class="sig-name descname"><span class="pre">xfmname</span></span><a class="headerlink" href="#cortex.dataset.Volume2D.xfmname" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/Volume2D/cortex.dataset.Volume2D.xfmname.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.__init__.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.__init__.html
index 8a327495d..93c4bd0a5 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.__init__.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.__init__.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.__init__ &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.__init__ &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-init">
-<h1>cortex.dataset.VolumeRGB.__init__<a class="headerlink" href="#cortex-dataset-volumergb-init" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.__init__<a class="headerlink" href="#cortex-dataset-volumergb-init" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.__init__">
-<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">channel1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel1color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(255,</span> <span class="pre">0,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">0,</span> <span class="pre">255)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_color_value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_color_saturation</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_range</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VolumeRGB.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VolumeRGB.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">channel1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel1color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(255,</span> <span class="pre">0,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">0,</span> <span class="pre">255)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_color_value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_color_saturation</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_range</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VolumeRGB.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VolumeRGB.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.__init__.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.alpha.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.alpha.html
new file mode 100644
index 000000000..ce27ae08d
--- /dev/null
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.alpha.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.alpha &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../../genindex.html" />
+    <link rel="search" title="Search" href="../../search.html" />
+   
+  <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
+  
+
+  
+  
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="cortex-dataset-volumergb-alpha">
+<h1>cortex.dataset.VolumeRGB.alpha<a class="headerlink" href="#cortex-dataset-volumergb-alpha" title="Link to this heading">¶</a></h1>
+<dl class="py property">
+<dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.alpha">
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">alpha</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.alpha" title="Link to this definition">¶</a></dt>
+<dd><p>Compute alpha transparency</p>
+</dd></dl>
+
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="../../index.html">pycortex</a></h1>
+
+
+
+
+
+
+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
+  allowtransparency="true" frameborder="0" scrolling="0" width="200px" height="35px"></iframe>
+</p>
+
+
+
+
+
+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../database.html">Surface Database</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../align.html">Alignments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../rois.html">Surface-defined ROIs</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../transforms.html">Transform formats</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../colormaps.html">Colormaps</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../auto_examples/index.html">Example Gallery</a></li>
+</ul>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../api_reference_flat.html">Python API Reference</a></li>
+</ul>
+
+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="../../index.html">Documentation overview</a><ul>
+  </ul></li>
+</ul>
+</div>
+<search id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
+
+
+
+
+
+
+
+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.alpha.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
+
+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.color_voxels.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.color_voxels.html
index 5aa284061..935daf920 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.color_voxels.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.color_voxels.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.color_voxels &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.color_voxels &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-color-voxels">
-<h1>cortex.dataset.VolumeRGB.color_voxels<a class="headerlink" href="#cortex-dataset-volumergb-color-voxels" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.color_voxels<a class="headerlink" href="#cortex-dataset-volumergb-color-voxels" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.color_voxels">
-<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">color_voxels</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">channel1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel1color</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2color</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3Color</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value_max</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">saturation_max</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">common_range</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">common_min</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">common_max</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VolumeRGB.color_voxels"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VolumeRGB.color_voxels" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">color_voxels</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">channel1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel1color</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2color</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3Color</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value_max</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">saturation_max</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">common_range</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">common_min</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">common_max</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VolumeRGB.color_voxels"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VolumeRGB.color_voxels" title="Link to this definition">¶</a></dt>
 <dd><p>Colors voxels in 3 color dimensions but not necessarily canonical red, green, and blue
 Parameters
 ———-
@@ -71,15 +70,21 @@ <h1>cortex.dataset.VolumeRGB.color_voxels<a class="headerlink" href="#cortex-dat
 <dt>common_max<span class="classifier">float, optional</span></dt><dd><p>Predetermined shared vmax. Does nothing if shared_range == False. If not given,
 will be the 99th percentile of all values across all three channels</p>
 </dd>
+<dt>alpha<span class="classifier">ndarray or Volume, optional</span></dt><dd><p>Alpha values for each voxel. If None, alpha is set to 1 for all voxels.</p>
+</dd>
 </dl>
 <dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
+<dt class="field-odd">Returns<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>red</strong><span class="classifier">ndarray of channel1.shape</span></dt><dd><p>uint8 array of red values</p>
 </dd>
-<dt><strong>green</strong><span class="classifier">ndarray of data2.shape</span></dt><dd><p>uint8 array of green values</p>
+<dt><strong>green</strong><span class="classifier">ndarray of channel1.shape</span></dt><dd><p>uint8 array of green values</p>
+</dd>
+<dt><strong>blue</strong><span class="classifier">ndarray of channel1.shape</span></dt><dd><p>uint8 array of blue values</p>
 </dd>
-<dt><strong>blue</strong><span class="classifier">ndarray of data3.shape</span></dt><dd><p>uint8 array of blue values</p>
+<dt><strong>alpha</strong><span class="classifier">ndarray</span></dt><dd><p>If alpha=None, uint8 array of alpha values with alpha=1 for every voxel. 
+Otherwise, the same alpha values that were passed in. Additionally, 
+voxels with NaNs will have an alpha value of 0.</p>
 </dd>
 </dl>
 </dd>
@@ -135,7 +140,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -143,8 +148,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -158,11 +163,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.color_voxels.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.copy.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.copy.html
index 77c0c8578..10dfb689b 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.copy.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.copy.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.copy &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.copy &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-copy">
-<h1>cortex.dataset.VolumeRGB.copy<a class="headerlink" href="#cortex-dataset-volumergb-copy" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.copy<a class="headerlink" href="#cortex-dataset-volumergb-copy" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.copy">
-<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VolumeRGB.copy" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">copy</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VolumeRGB.copy" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.copy.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.from_hdf.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.from_hdf.html
index 463af35ec..18436b943 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.from_hdf.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.from_hdf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.from_hdf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.from_hdf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-from-hdf">
-<h1>cortex.dataset.VolumeRGB.from_hdf<a class="headerlink" href="#cortex-dataset-volumergb-from-hdf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.from_hdf<a class="headerlink" href="#cortex-dataset-volumergb-from-hdf" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.from_hdf">
-<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VolumeRGB.from_hdf" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">static</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">from_hdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">node</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VolumeRGB.from_hdf" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.from_hdf.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.html
new file mode 100644
index 000000000..e8257e10e
--- /dev/null
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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+    <title>cortex.dataset.VolumeRGB.get_cmapdict &#8212; pycortex 1.2.8 documentation</title>
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+            
+  <section id="cortex-dataset-volumergb-get-cmapdict">
+<h1>cortex.dataset.VolumeRGB.get_cmapdict<a class="headerlink" href="#cortex-dataset-volumergb-get-cmapdict" title="Link to this heading">¶</a></h1>
+<dl class="py method">
+<dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.get_cmapdict">
+<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">get_cmapdict</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VolumeRGB.get_cmapdict" title="Link to this definition">¶</a></dt>
+<dd><p>Returns a dictionary with cmap information.</p>
+</dd></dl>
+
+</section>
+
+
+          </div>
+          
+        </div>
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+</div>
+<search id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="../../search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
+
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+
+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &#169;2012, James Gao.
+      
+      |
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      
+      |
+      <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
+    
+
+    
+  </body>
+</html>
\ No newline at end of file
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.name.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.name.html
index 53fc005c6..d5f60499c 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.name.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.name.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.name &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.name &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-name">
-<h1>cortex.dataset.VolumeRGB.name<a class="headerlink" href="#cortex-dataset-volumergb-name" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.name<a class="headerlink" href="#cortex-dataset-volumergb-name" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.name">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.name" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">name</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.name" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.name.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.priority.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.priority.html
index ea9d10895..1661f20a0 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.priority.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.priority.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.priority &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
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-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.priority &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-priority">
-<h1>cortex.dataset.VolumeRGB.priority<a class="headerlink" href="#cortex-dataset-volumergb-priority" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.priority<a class="headerlink" href="#cortex-dataset-volumergb-priority" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.priority">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.priority" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">priority</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.priority" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.priority.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.raw.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.raw.html
index c6b0310ac..99838445f 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.raw.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.raw.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.raw &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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-    <script src="../../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.raw &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-raw">
-<h1>cortex.dataset.VolumeRGB.raw<a class="headerlink" href="#cortex-dataset-volumergb-raw" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.raw<a class="headerlink" href="#cortex-dataset-volumergb-raw" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.raw">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.raw" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">raw</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.raw" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.raw.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.to_json.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.to_json.html
index d36da7eeb..c866a4741 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.to_json.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.to_json.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.to_json &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.to_json &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-to-json">
-<h1>cortex.dataset.VolumeRGB.to_json<a class="headerlink" href="#cortex-dataset-volumergb-to-json" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.to_json<a class="headerlink" href="#cortex-dataset-volumergb-to-json" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.to_json">
-<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VolumeRGB.to_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VolumeRGB.to_json" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">to_json</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">simple</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/cortex/dataset/viewRGB.html#VolumeRGB.to_json"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VolumeRGB.to_json" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
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     </form>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
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-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
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-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
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diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.uniques.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.uniques.html
index 188ac488c..af9e5fd5f 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.uniques.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.uniques.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.uniques &#8212; pycortex 1.2.4 documentation</title>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.uniques &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
    
   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-uniques">
-<h1>cortex.dataset.VolumeRGB.uniques<a class="headerlink" href="#cortex-dataset-volumergb-uniques" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.uniques<a class="headerlink" href="#cortex-dataset-volumergb-uniques" title="Link to this heading">¶</a></h1>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.uniques">
-<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VolumeRGB.uniques" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">uniques</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">collapse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cortex.dataset.VolumeRGB.uniques" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.uniques.rst.txt"
diff --git a/generated/VolumeRGB/cortex.dataset.VolumeRGB.volume.html b/generated/VolumeRGB/cortex.dataset.VolumeRGB.volume.html
index 60665d5ab..15158b5e4 100644
--- a/generated/VolumeRGB/cortex.dataset.VolumeRGB.volume.html
+++ b/generated/VolumeRGB/cortex.dataset.VolumeRGB.volume.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB.volume &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB.volume &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css?v=12dfc556" />
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   <link rel="stylesheet" href="../../_static/custom.css" type="text/css" />
   
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   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb-volume">
-<h1>cortex.dataset.VolumeRGB.volume<a class="headerlink" href="#cortex-dataset-volumergb-volume" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB.volume<a class="headerlink" href="#cortex-dataset-volumergb-volume" title="Link to this heading">¶</a></h1>
 <dl class="py property">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB.volume">
-<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">volume</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.volume" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">VolumeRGB.</span></span><span class="sig-name descname"><span class="pre">volume</span></span><a class="headerlink" href="#cortex.dataset.VolumeRGB.volume" title="Link to this definition">¶</a></dt>
 <dd><p>5-dimensional volume (t, z, y, x, rgba) with data that has been mapped
 into 8-bit unsigned integers that correspond to colors.</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../../_sources/generated/VolumeRGB/cortex.dataset.VolumeRGB.volume.rst.txt"
diff --git a/generated/cortex.align.automatic.html b/generated/cortex.align.automatic.html
index 87e7503b3..23faddb2d 100644
--- a/generated/cortex.align.automatic.html
+++ b/generated/cortex.align.automatic.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.align.automatic &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.align.automatic &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,49 +35,60 @@
           <div class="body" role="main">
             
   <section id="cortex-align-automatic">
-<h1>cortex.align.automatic<a class="headerlink" href="#cortex-align-automatic" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.align.automatic<a class="headerlink" href="#cortex-align-automatic" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.align.automatic">
-<span class="sig-prename descclassname"><span class="pre">cortex.align.</span></span><span class="sig-name descname"><span class="pre">automatic</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">noclean</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bbrtype</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'signed'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pre_flirt_args</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_fs_bbr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">epi_mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">intermediate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/align.html#automatic"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.align.automatic" title="Permalink to this definition">¶</a></dt>
-<dd><p>Create an automatic alignment using the FLIRT boundary-based alignment (BBR) from FSL.</p>
-<p>If <cite>noclean</cite>, intermediate files will not be removed from /tmp. The <cite>reference</cite> image and resulting
-transform called <cite>xfmname</cite> will be automatically stored in the database.</p>
-<p>It’s good practice to open up this transform afterward in the manual aligner and check how it worked.
-Do that using the following (with the same <cite>subject</cite> and <cite>xfmname</cite> used here, no need for <cite>reference</cite>):
-&gt; align.manual(subject, xfmname)</p>
-<p>If automatic alignment gives you a very bad answer, you can try giving the pre-BBR FLIRT
-some hints by passing ‘-usesqform’ in as <cite>pre_flirt_args</cite>.</p>
+<span class="sig-prename descclassname"><span class="pre">cortex.align.</span></span><span class="sig-name descname"><span class="pre">automatic</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">init</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'coreg'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">epi_mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">intermediate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference_contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'t2'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">noclean</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/align.html#automatic"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.align.automatic" title="Link to this definition">¶</a></dt>
+<dd><p>Perform automatic alignment using Freesurfer’s boundary-based registration.
+The <cite>reference</cite> image and resulting transform called <cite>xfmname</cite> will be automatically
+stored in the database.</p>
+<p>If <cite>noclean</cite> is set to True, intermediate files will not be removed from /tmp.</p>
+<p>It’s good practice to open up this transform afterward in the manual aligner and
+check how it worked. Do that using the following code (passing the same <cite>subject</cite>
+and <cite>xfmname</cite> used here, no need for <cite>reference</cite>):</p>
+<p>&gt; cortex.align.manual(subject, xfmname)</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier.</p>
 </dd>
-<dt><strong>xfmname</strong><span class="classifier">str</span></dt><dd><p>String identifying the transform to be created.</p>
+<dt><strong>xfmname</strong><span class="classifier">str</span></dt><dd><p>Name of the transform to be created and stored in the database.</p>
 </dd>
-<dt><strong>reference</strong><span class="classifier">str</span></dt><dd><p>Path to a nibabel-readable image that will be used as the reference for this transform.
-Usually, this is a single (3D) functional data volume.</p>
+<dt><strong>reference</strong><span class="classifier">str</span></dt><dd><p>Path to a nibabel-readable image that will be used as the reference for
+this transform. Usually, this is a single (3D) functional data volume.</p>
 </dd>
-<dt><strong>noclean</strong><span class="classifier">bool, optional</span></dt><dd><p>If True intermediate files will not be removed from /tmp (this is useful for debugging things),
-and the returned value will be the name of the temp directory. Default False.</p>
+<dt><strong>init</strong><span class="classifier">str, optional</span></dt><dd><p>One of “coreg”, “fsl”, “header”, or a path to a transform from the reference
+volume to the anatomical volume.
+Specifies the initialization method to obtain a first alignment that will be
+refined with bbregister. Default is “coreg”, which uses Freesurfer’s <cite>mri_coreg</cite>
+and it generally performs best. Other options include “fsl” to use FSL’s FLIRT
+or “header” to assume that the reference and the anatomical are already close
+enough (this option can be used when the reference and the anatomical are
+acquired in the same session). Finally, you can also specify a path to a
+transform file (in DAT or LTA format) that will be used as initialization.</p>
 </dd>
-<dt><strong>bbrtype</strong><span class="classifier">str, optional</span></dt><dd><p>The ‘bbrtype’ argument that is passed to FLIRT.</p>
+<dt><strong>epi_mask</strong><span class="classifier">bool, optional</span></dt><dd><p>If True, then the flag –epi-mask is passed to bbregister to mask out areas
+with spatial distortions. This setting recommended whenever the reference was
+not distortion corrected.</p>
 </dd>
-<dt><strong>pre_flirt_args</strong><span class="classifier">str, optional</span></dt><dd><p>Additional arguments that are passed to the FLIRT pre-alignment step (not BBR).</p>
+<dt><strong>intermediate</strong><span class="classifier">str</span></dt><dd><p>Path to a nibabel-readable image that will be used as intermediate volume
+for alignment. This is useful if the reference image has a small field-of-view
+and a whole-brain image was acquired in the same session.</p>
 </dd>
-<dt><strong>use_fs_bbr</strong><span class="classifier">bool, optional</span></dt><dd><p>If True will use freesurfer bbregister instead of FSL BBR. (default, True)</p>
+<dt><strong>reference_contrast</strong><span class="classifier">str</span></dt><dd><p>Contrast of the reference image. This is used to determine the appropriate
+contrast for the reference image in the bbregister command. Default is “t2”
+(for BOLD): gray matter is brighter than white matter.
+The alternative option is “t1”: white matter is brighter than gray matter.</p>
 </dd>
-<dt><strong>epi_mask</strong><span class="classifier">bool, optional</span></dt><dd><p>If True, and use_fs_bbr is True, then the flag –epi-mask is passed to bbregister
-to mask out areas with spatial distortions. This setting is to be used whenever
-the reference was not distortion corrected.</p>
-</dd>
-<dt><strong>intermediate</strong><span class="classifier">str</span></dt><dd><p>Path to a nibabel-readable image that will be used as intermediate for the alignment.
-Usually, this is a single (3D) functional data volume.</p>
+<dt><strong>noclean</strong><span class="classifier">bool, optional</span></dt><dd><p>If True, intermediate files will not be removed from /tmp (this is useful
+for debugging things), and the returned value will be the name of the
+temp directory. Default False.</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
-<dt>Nothing unless <cite>noclean</cite> is True.</dt><dd></dd>
+<dt>None or path to temp directory if <cite>noclean</cite> is True.</dt><dd></dd>
 </dl>
 </dd>
 </dl>
@@ -133,7 +143,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -141,8 +151,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -156,11 +166,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.align.automatic.rst.txt"
diff --git a/generated/cortex.align.autotweak.html b/generated/cortex.align.autotweak.html
index 6cf533900..646675fe9 100644
--- a/generated/cortex.align.autotweak.html
+++ b/generated/cortex.align.autotweak.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.align.autotweak &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.align.autotweak &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-align-autotweak">
-<h1>cortex.align.autotweak<a class="headerlink" href="#cortex-align-autotweak" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.align.autotweak<a class="headerlink" href="#cortex-align-autotweak" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.align.autotweak">
-<span class="sig-prename descclassname"><span class="pre">cortex.align.</span></span><span class="sig-name descname"><span class="pre">autotweak</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/align.html#autotweak"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.align.autotweak" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.align.</span></span><span class="sig-name descname"><span class="pre">autotweak</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/align.html#autotweak"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.align.autotweak" title="Link to this definition">¶</a></dt>
 <dd><p>Tweak an alignment using the FLIRT boundary-based alignment (BBR) from FSL.
 Ideally this function should actually use a limited search range, but it doesn’t.
 It’s probably not very useful.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier.</p>
 </dd>
@@ -104,7 +103,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -112,8 +111,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -127,11 +126,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.align.autotweak.rst.txt"
diff --git a/generated/cortex.align.manual.html b/generated/cortex.align.manual.html
index 1e4bcf4a6..a343f14a9 100644
--- a/generated/cortex.align.manual.html
+++ b/generated/cortex.align.manual.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.align.manual &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.align.manual &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-align-manual">
-<h1>cortex.align.manual<a class="headerlink" href="#cortex-align-manual" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.align.manual<a class="headerlink" href="#cortex-align-manual" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.align.manual">
-<span class="sig-prename descclassname"><span class="pre">cortex.align.</span></span><span class="sig-name descname"><span class="pre">manual</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'register.lta'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">wm_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'yellow'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pial_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'blue'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">wm_surface</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'white'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">noclean</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inspect_only</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/align.html#manual"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.align.manual" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.align.</span></span><span class="sig-name descname"><span class="pre">manual</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'register.lta'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">wm_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'yellow'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pial_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'blue'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">wm_surface</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'white'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">noclean</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">inspect_only</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/align.html#manual"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.align.manual" title="Link to this definition">¶</a></dt>
 <dd><p>Open Freesurfer FreeView GUI for manually aligning/adjusting a functional
 volume to the cortical surface for <cite>subject</cite>. This creates a new transform
 called <cite>xfmname</cite>. The name of a nibabel-readable file (e.g. NIfTI) should be
@@ -56,7 +55,7 @@ <h1>cortex.align.manual<a class="headerlink" href="#cortex-align-manual" title="
 <p>Renamed from fs_manual() to manual(), since old manual() function was no longer 
 supported (or functional) for a while due to changes in mayavi.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier.</p>
 </dd>
@@ -85,7 +84,7 @@ <h1>cortex.align.manual<a class="headerlink" href="#cortex-align-manual" title="
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>Nothing unless noclean is true.</dt><dd></dd>
 </dl>
@@ -142,7 +141,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -150,8 +149,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -165,11 +164,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.align.manual.rst.txt"
diff --git a/generated/cortex.anat.brainmask.html b/generated/cortex.anat.brainmask.html
index b7b3401d1..be488457d 100644
--- a/generated/cortex.anat.brainmask.html
+++ b/generated/cortex.anat.brainmask.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.anat.brainmask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.anat.brainmask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-anat-brainmask">
-<h1>cortex.anat.brainmask<a class="headerlink" href="#cortex-anat-brainmask" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.anat.brainmask<a class="headerlink" href="#cortex-anat-brainmask" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.anat.brainmask">
-<span class="sig-prename descclassname"><span class="pre">cortex.anat.</span></span><span class="sig-name descname"><span class="pre">brainmask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/anat.html#brainmask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.anat.brainmask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.anat.</span></span><span class="sig-name descname"><span class="pre">brainmask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/anat.html#brainmask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.anat.brainmask" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.anat.brainmask.rst.txt"
diff --git a/generated/cortex.anat.voxelize.html b/generated/cortex.anat.voxelize.html
index c3957e34e..c7f9dd0bf 100644
--- a/generated/cortex.anat.voxelize.html
+++ b/generated/cortex.anat.voxelize.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.anat.voxelize &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.anat.voxelize &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-anat-voxelize">
-<h1>cortex.anat.voxelize<a class="headerlink" href="#cortex-anat-voxelize" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.anat.voxelize<a class="headerlink" href="#cortex-anat-voxelize" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.anat.voxelize">
-<span class="sig-prename descclassname"><span class="pre">cortex.anat.</span></span><span class="sig-name descname"><span class="pre">voxelize</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'wm'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/anat.html#voxelize"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.anat.voxelize" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.anat.</span></span><span class="sig-name descname"><span class="pre">voxelize</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'wm'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/anat.html#voxelize"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.anat.voxelize" title="Link to this definition">¶</a></dt>
 <dd><p>Voxelize the whitematter surface to generate the white matter mask</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.anat.voxelize.rst.txt"
diff --git a/generated/cortex.anat.whitematter.html b/generated/cortex.anat.whitematter.html
index bbb69dce2..2c5e8604b 100644
--- a/generated/cortex.anat.whitematter.html
+++ b/generated/cortex.anat.whitematter.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.anat.whitematter &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.anat.whitematter &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-anat-whitematter">
-<h1>cortex.anat.whitematter<a class="headerlink" href="#cortex-anat-whitematter" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.anat.whitematter<a class="headerlink" href="#cortex-anat-whitematter" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.anat.whitematter">
-<span class="sig-prename descclassname"><span class="pre">cortex.anat.</span></span><span class="sig-name descname"><span class="pre">whitematter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do_voxelize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/anat.html#whitematter"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.anat.whitematter" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.anat.</span></span><span class="sig-name descname"><span class="pre">whitematter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do_voxelize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/anat.html#whitematter"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.anat.whitematter" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.anat.whitematter.rst.txt"
diff --git a/generated/cortex.database.Database.html b/generated/cortex.database.Database.html
index cc44350df..0fbb923ab 100644
--- a/generated/cortex.database.Database.html
+++ b/generated/cortex.database.Database.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.database.Database &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.database.Database &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-database-database">
-<h1>cortex.database.Database<a class="headerlink" href="#cortex-database-database" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.database.Database<a class="headerlink" href="#cortex-database-database" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.database.Database">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.database.</span></span><span class="sig-name descname"><span class="pre">Database</span></span><a class="reference internal" href="../_modules/cortex/database.html#Database"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.database.</span></span><span class="sig-name descname"><span class="pre">Database</span></span><a class="reference internal" href="../_modules/cortex/database.html#Database"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.database.Database" title="Link to this definition">¶</a></dt>
 <dd><p>Surface database</p>
 <dl class="field-list simple">
-<dt class="field-odd">Attributes</dt>
+<dt class="field-odd">Attributes<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>This database object dynamically generates handles to all subjects within the filestore.</strong></dt><dd></dd>
 </dl>
@@ -50,10 +49,6 @@ <h1>cortex.database.Database<a class="headerlink" href="#cortex-database-databas
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Database/cortex.database.Database.__init__.html#cortex.database.Database.__init__" title="cortex.database.Database.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>([filestore])</p></td>
 <td><p></p></td>
@@ -92,7 +87,7 @@ <h1>cortex.database.Database<a class="headerlink" href="#cortex-database-databas
 <td><p>Return the surface pair for the given subject, surface type, and hemisphere.</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="Database/cortex.database.Database.get_surfinfo.html#cortex.database.Database.get_surfinfo" title="cortex.database.Database.get_surfinfo"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_surfinfo</span></code></a>(subject[, type, recache])</p></td>
-<td><p>Return auxillary surface information from the filestore.</p></td>
+<td><p>Return auxiliary surface information from the filestore.</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="Database/cortex.database.Database.get_view.html#cortex.database.Database.get_view" title="cortex.database.Database.get_view"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_view</span></code></a>(vw, subject, name)</p></td>
 <td><p>Set the view for an open webshow instance from a saved view</p></td>
@@ -119,10 +114,6 @@ <h1>cortex.database.Database<a class="headerlink" href="#cortex-database-databas
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Database/cortex.database.Database.subjects.html#cortex.database.Database.subjects" title="cortex.database.Database.subjects"><code class="xref py py-obj docutils literal notranslate"><span class="pre">subjects</span></code></a></p></td>
 <td><p></p></td>
@@ -180,7 +171,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -188,8 +179,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -203,11 +194,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.database.Database.rst.txt"
diff --git a/generated/cortex.dataset.Dataset.html b/generated/cortex.dataset.Dataset.html
index 90de34093..01647c520 100644
--- a/generated/cortex.dataset.Dataset.html
+++ b/generated/cortex.dataset.Dataset.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Dataset &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Dataset &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
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+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,20 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-dataset">
-<h1>cortex.dataset.Dataset<a class="headerlink" href="#cortex-dataset-dataset" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Dataset<a class="headerlink" href="#cortex-dataset-dataset" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.dataset.Dataset">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Dataset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/dataset.html#Dataset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Dataset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/dataset.html#Dataset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Dataset" title="Link to this definition">¶</a></dt>
 <dd><p>Wrapper for multiple data objects. This often does not need to be used 
 explicitly–for example, if a dictionary of data objects is passed to 
 <cite>cortex.webshow</cite>, it will automatically be converted into a <cite>Dataset</cite>.</p>
 <p>All kwargs should be <cite>BrainData</cite> or <cite>Dataset</cite> objects.</p>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Dataset/cortex.dataset.Dataset.__init__.html#cortex.dataset.Dataset.__init__" title="cortex.dataset.Dataset.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(**kwargs)</p></td>
 <td><p></p></td>
@@ -57,8 +52,8 @@ <h1>cortex.dataset.Dataset<a class="headerlink" href="#cortex-dataset-dataset" t
 <tr class="row-even"><td><p><a class="reference internal" href="Dataset/cortex.dataset.Dataset.append.html#cortex.dataset.Dataset.append" title="cortex.dataset.Dataset.append"><code class="xref py py-obj docutils literal notranslate"><span class="pre">append</span></code></a>(**kwargs)</p></td>
 <td><p>Add the <cite>BrainData</cite> or <cite>Dataset</cite> objects in <cite>kwargs</cite> into this  dataset.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Dataset/cortex.dataset.Dataset.from_file.html#cortex.dataset.Dataset.from_file" title="cortex.dataset.Dataset.from_file"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_file</span></code></a>(filename)</p></td>
-<td><p></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Dataset/cortex.dataset.Dataset.from_file.html#cortex.dataset.Dataset.from_file" title="cortex.dataset.Dataset.from_file"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_file</span></code></a>(filename[, subject])</p></td>
+<td><p>Load a pycortex Dataset (cortex.Dataset class) from a file</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="Dataset/cortex.dataset.Dataset.get_mask.html#cortex.dataset.Dataset.get_mask" title="cortex.dataset.Dataset.get_mask"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_mask</span></code></a>(subject, xfmname, maskname)</p></td>
 <td><p></p></td>
@@ -134,7 +129,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -142,8 +137,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -157,11 +152,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.dataset.Dataset.rst.txt"
diff --git a/generated/cortex.dataset.Vertex.html b/generated/cortex.dataset.Vertex.html
index 5350299de..5b8fdb9e1 100644
--- a/generated/cortex.dataset.Vertex.html
+++ b/generated/cortex.dataset.Vertex.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex">
-<h1>cortex.dataset.Vertex<a class="headerlink" href="#cortex-dataset-vertex" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex<a class="headerlink" href="#cortex-dataset-vertex" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Vertex</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/views.html#Vertex"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Vertex</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/views.html#Vertex"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex" title="Link to this definition">¶</a></dt>
 <dd><p>Encapsulates a 1D vertex map or 2D vertex movie. Includes information on how
 the data should be colormapped for display purposes.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>data</strong><span class="classifier">ndarray</span></dt><dd><p>The data. Can be 1D with shape (v,), or 2D with shape (t,v). Here, v can
 be the number of vertices in both hemispheres, or the number of vertices
@@ -70,10 +69,6 @@ <h1>cortex.dataset.Vertex<a class="headerlink" href="#cortex-dataset-vertex" tit
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.__init__.html#cortex.dataset.Vertex.__init__" title="cortex.dataset.Vertex.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(data, subject[, cmap, vmin, vmax, ...])</p></td>
 <td><p></p></td>
@@ -90,32 +85,31 @@ <h1>cortex.dataset.Vertex<a class="headerlink" href="#cortex-dataset-vertex" tit
 <tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.exp.html#cortex.dataset.Vertex.exp" title="cortex.dataset.Vertex.exp"><code class="xref py py-obj docutils literal notranslate"><span class="pre">exp</span></code></a>()</p></td>
 <td><p>Return copy of this brain data with data exponentiated.</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.from_hdf.html#cortex.dataset.Vertex.from_hdf" title="cortex.dataset.Vertex.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node)</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.from_hdf.html#cortex.dataset.Vertex.from_hdf" title="cortex.dataset.Vertex.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node[, subject])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.map.html#cortex.dataset.Vertex.map" title="cortex.dataset.Vertex.map"><code class="xref py py-obj docutils literal notranslate"><span class="pre">map</span></code></a>(target_subj[, surface_type, hemi, fs_subj])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.get_cmapdict.html#cortex.dataset.Vertex.get_cmapdict" title="cortex.dataset.Vertex.get_cmapdict"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_cmapdict</span></code></a>()</p></td>
+<td><p>Returns a dictionary with cmap information.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.map.html#cortex.dataset.Vertex.map" title="cortex.dataset.Vertex.map"><code class="xref py py-obj docutils literal notranslate"><span class="pre">map</span></code></a>(target_subj[, surface_type, hemi, fs_subj])</p></td>
 <td><p>Map this data from this surface to another surface</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.random.html#cortex.dataset.Vertex.random" title="cortex.dataset.Vertex.random"><code class="xref py py-obj docutils literal notranslate"><span class="pre">random</span></code></a>(subject, **kwargs)</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.random.html#cortex.dataset.Vertex.random" title="cortex.dataset.Vertex.random"><code class="xref py py-obj docutils literal notranslate"><span class="pre">random</span></code></a>(subject, **kwargs)</p></td>
 <td><p>Create a random-valued VertexData for the given subject.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.to_json.html#cortex.dataset.Vertex.to_json" title="cortex.dataset.Vertex.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.to_json.html#cortex.dataset.Vertex.to_json" title="cortex.dataset.Vertex.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
 <td><p>Creates JSON description of this brain data.</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.uniques.html#cortex.dataset.Vertex.uniques" title="cortex.dataset.Vertex.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.uniques.html#cortex.dataset.Vertex.uniques" title="cortex.dataset.Vertex.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
 <td><p>TODO: WHAT IS THIS</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.volume.html#cortex.dataset.Vertex.volume" title="cortex.dataset.Vertex.volume"><code class="xref py py-obj docutils literal notranslate"><span class="pre">volume</span></code></a>(xfmname[, projection])</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.volume.html#cortex.dataset.Vertex.volume" title="cortex.dataset.Vertex.volume"><code class="xref py py-obj docutils literal notranslate"><span class="pre">volume</span></code></a>(xfmname[, projection])</p></td>
 <td><p>Map this VertexData back to volume space, creating a VolumeData object.</p></td>
 </tr>
 </tbody>
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Vertex/cortex.dataset.Vertex.data.html#cortex.dataset.Vertex.data" title="cortex.dataset.Vertex.data"><code class="xref py py-obj docutils literal notranslate"><span class="pre">data</span></code></a></p></td>
 <td><p></p></td>
@@ -191,7 +185,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -199,8 +193,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -214,11 +208,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.dataset.Vertex.rst.txt"
diff --git a/generated/cortex.dataset.Vertex2D.html b/generated/cortex.dataset.Vertex2D.html
index d73d26aac..a8acd6e10 100644
--- a/generated/cortex.dataset.Vertex2D.html
+++ b/generated/cortex.dataset.Vertex2D.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Vertex2D &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Vertex2D &#8212; pycortex 1.2.8 documentation</title>
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     <link rel="index" title="Index" href="../genindex.html" />
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   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
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   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertex2d">
-<h1>cortex.dataset.Vertex2D<a class="headerlink" href="#cortex-dataset-vertex2d" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Vertex2D<a class="headerlink" href="#cortex-dataset-vertex2d" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.dataset.Vertex2D">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Vertex2D</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/view2D.html#Vertex2D"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex2D" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Vertex2D</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/view2D.html#Vertex2D"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Vertex2D" title="Link to this definition">¶</a></dt>
 <dd><p>Contains two vertex maps for simultaneous visualization. Includes information
 on how the maps should be jointly colormapped.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>dim1</strong><span class="classifier">ndarray or Vertex</span></dt><dd><p>The first vertex map. Can be a 1D array (see Vertex for details), or
 a Vertex.</p>
@@ -74,10 +73,6 @@ <h1>cortex.dataset.Vertex2D<a class="headerlink" href="#cortex-dataset-vertex2d"
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.__init__.html#cortex.dataset.Vertex2D.__init__" title="cortex.dataset.Vertex2D.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(dim1, dim2[, subject, description, ...])</p></td>
 <td><p></p></td>
@@ -88,23 +83,22 @@ <h1>cortex.dataset.Vertex2D<a class="headerlink" href="#cortex-dataset-vertex2d"
 <tr class="row-odd"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.copy.html#cortex.dataset.Vertex2D.copy" title="cortex.dataset.Vertex2D.copy"><code class="xref py py-obj docutils literal notranslate"><span class="pre">copy</span></code></a>(*args, **kwargs)</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.from_hdf.html#cortex.dataset.Vertex2D.from_hdf" title="cortex.dataset.Vertex2D.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node)</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.from_hdf.html#cortex.dataset.Vertex2D.from_hdf" title="cortex.dataset.Vertex2D.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node[, subject])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.to_json.html#cortex.dataset.Vertex2D.to_json" title="cortex.dataset.Vertex2D.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.html#cortex.dataset.Vertex2D.get_cmapdict" title="cortex.dataset.Vertex2D.get_cmapdict"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_cmapdict</span></code></a>()</p></td>
+<td><p>Returns a dictionary with cmap information.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.to_json.html#cortex.dataset.Vertex2D.to_json" title="cortex.dataset.Vertex2D.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.uniques.html#cortex.dataset.Vertex2D.uniques" title="cortex.dataset.Vertex2D.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.uniques.html#cortex.dataset.Vertex2D.uniques" title="cortex.dataset.Vertex2D.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
 <td><p></p></td>
 </tr>
 </tbody>
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Vertex2D/cortex.dataset.Vertex2D.priority.html#cortex.dataset.Vertex2D.priority" title="cortex.dataset.Vertex2D.priority"><code class="xref py py-obj docutils literal notranslate"><span class="pre">priority</span></code></a></p></td>
 <td><p></p></td>
@@ -171,7 +165,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -179,8 +173,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -194,11 +188,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.dataset.Vertex2D.rst.txt"
diff --git a/generated/cortex.dataset.VertexRGB.html b/generated/cortex.dataset.VertexRGB.html
index 4c348f8aa..0c0601d21 100644
--- a/generated/cortex.dataset.VertexRGB.html
+++ b/generated/cortex.dataset.VertexRGB.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VertexRGB &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VertexRGB &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-vertexrgb">
-<h1>cortex.dataset.VertexRGB<a class="headerlink" href="#cortex-dataset-vertexrgb" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VertexRGB<a class="headerlink" href="#cortex-dataset-vertexrgb" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.dataset.VertexRGB">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">VertexRGB</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">red</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">green</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">blue</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/viewRGB.html#VertexRGB"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VertexRGB" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">VertexRGB</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">red</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">green</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">blue</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/viewRGB.html#VertexRGB"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VertexRGB" title="Link to this definition">¶</a></dt>
 <dd><p>Contains RGB (or RGBA) colors for each vertex in a surface dataset.
 Includes information about the subject.</p>
 <p>Each color channel is represented as a separate Vertex object (these can
@@ -47,7 +46,7 @@ <h1>cortex.dataset.VertexRGB<a class="headerlink" href="#cortex-dataset-vertexrg
 arrays). The vmin for each Vertex will be mapped to the minimum value for
 that color channel, and the vmax will be mapped to the maximum value.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>red</strong><span class="classifier">ndarray or Vertex</span></dt><dd><p>Array or Vertex that represents the red component of the color for each
 voxel. Can be a 1D or 3D array (see Vertex for details), or a Vertex.</p>
@@ -77,10 +76,6 @@ <h1>cortex.dataset.VertexRGB<a class="headerlink" href="#cortex-dataset-vertexrg
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.__init__.html#cortex.dataset.VertexRGB.__init__" title="cortex.dataset.VertexRGB.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(red, green, blue[, subject, alpha, ...])</p></td>
 <td><p></p></td>
@@ -91,40 +86,42 @@ <h1>cortex.dataset.VertexRGB<a class="headerlink" href="#cortex-dataset-vertexrg
 <tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.copy.html#cortex.dataset.VertexRGB.copy" title="cortex.dataset.VertexRGB.copy"><code class="xref py py-obj docutils literal notranslate"><span class="pre">copy</span></code></a>(*args, **kwargs)</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.from_hdf.html#cortex.dataset.VertexRGB.from_hdf" title="cortex.dataset.VertexRGB.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node)</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.from_hdf.html#cortex.dataset.VertexRGB.from_hdf" title="cortex.dataset.VertexRGB.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node[, subject])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.to_json.html#cortex.dataset.VertexRGB.to_json" title="cortex.dataset.VertexRGB.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.html#cortex.dataset.VertexRGB.get_cmapdict" title="cortex.dataset.VertexRGB.get_cmapdict"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_cmapdict</span></code></a>()</p></td>
+<td><p>Returns a dictionary with cmap information.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.to_json.html#cortex.dataset.VertexRGB.to_json" title="cortex.dataset.VertexRGB.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.uniques.html#cortex.dataset.VertexRGB.uniques" title="cortex.dataset.VertexRGB.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.uniques.html#cortex.dataset.VertexRGB.uniques" title="cortex.dataset.VertexRGB.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
 <td><p></p></td>
 </tr>
 </tbody>
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.left.html#cortex.dataset.VertexRGB.left" title="cortex.dataset.VertexRGB.left"><code class="xref py py-obj docutils literal notranslate"><span class="pre">left</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.alpha.html#cortex.dataset.VertexRGB.alpha" title="cortex.dataset.VertexRGB.alpha"><code class="xref py py-obj docutils literal notranslate"><span class="pre">alpha</span></code></a></p></td>
+<td><p>Compute alpha transparency</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.left.html#cortex.dataset.VertexRGB.left" title="cortex.dataset.VertexRGB.left"><code class="xref py py-obj docutils literal notranslate"><span class="pre">left</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.name.html#cortex.dataset.VertexRGB.name" title="cortex.dataset.VertexRGB.name"><code class="xref py py-obj docutils literal notranslate"><span class="pre">name</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.name.html#cortex.dataset.VertexRGB.name" title="cortex.dataset.VertexRGB.name"><code class="xref py py-obj docutils literal notranslate"><span class="pre">name</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.priority.html#cortex.dataset.VertexRGB.priority" title="cortex.dataset.VertexRGB.priority"><code class="xref py py-obj docutils literal notranslate"><span class="pre">priority</span></code></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.priority.html#cortex.dataset.VertexRGB.priority" title="cortex.dataset.VertexRGB.priority"><code class="xref py py-obj docutils literal notranslate"><span class="pre">priority</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.raw.html#cortex.dataset.VertexRGB.raw" title="cortex.dataset.VertexRGB.raw"><code class="xref py py-obj docutils literal notranslate"><span class="pre">raw</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.raw.html#cortex.dataset.VertexRGB.raw" title="cortex.dataset.VertexRGB.raw"><code class="xref py py-obj docutils literal notranslate"><span class="pre">raw</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.right.html#cortex.dataset.VertexRGB.right" title="cortex.dataset.VertexRGB.right"><code class="xref py py-obj docutils literal notranslate"><span class="pre">right</span></code></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.right.html#cortex.dataset.VertexRGB.right" title="cortex.dataset.VertexRGB.right"><code class="xref py py-obj docutils literal notranslate"><span class="pre">right</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.vertices.html#cortex.dataset.VertexRGB.vertices" title="cortex.dataset.VertexRGB.vertices"><code class="xref py py-obj docutils literal notranslate"><span class="pre">vertices</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VertexRGB/cortex.dataset.VertexRGB.vertices.html#cortex.dataset.VertexRGB.vertices" title="cortex.dataset.VertexRGB.vertices"><code class="xref py py-obj docutils literal notranslate"><span class="pre">vertices</span></code></a></p></td>
 <td><p>3-dimensional volume (t, v, rgba) with data that has been mapped into 8-bit unsigned integers that correspond to colors.</p></td>
 </tr>
 </tbody>
@@ -180,7 +177,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -188,8 +185,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -203,11 +200,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.dataset.VertexRGB.rst.txt"
diff --git a/generated/cortex.dataset.Volume.html b/generated/cortex.dataset.Volume.html
index b5cc426b2..b4deff081 100644
--- a/generated/cortex.dataset.Volume.html
+++ b/generated/cortex.dataset.Volume.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume">
-<h1>cortex.dataset.Volume<a class="headerlink" href="#cortex-dataset-volume" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume<a class="headerlink" href="#cortex-dataset-volume" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.dataset.Volume">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Volume</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/views.html#Volume"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Volume" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Volume</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/views.html#Volume"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Volume" title="Link to this definition">¶</a></dt>
 <dd><p>Encapsulates a 3D volume or 4D volumetric movie. Includes information on how
 the volume should be colormapped for display purposes.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>data</strong><span class="classifier">ndarray</span></dt><dd><p>The data. Can be 3D with shape (z,y,x), 1D with shape (v,) for masked data,
 4D with shape (t,z,y,x), or 2D with shape (t,v). For masked data, if the
@@ -77,10 +76,6 @@ <h1>cortex.dataset.Volume<a class="headerlink" href="#cortex-dataset-volume" tit
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.__init__.html#cortex.dataset.Volume.__init__" title="cortex.dataset.Volume.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(data, subject, xfmname[, mask, ...])</p></td>
 <td><p></p></td>
@@ -94,35 +89,34 @@ <h1>cortex.dataset.Volume<a class="headerlink" href="#cortex-dataset-volume" tit
 <tr class="row-even"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.exp.html#cortex.dataset.Volume.exp" title="cortex.dataset.Volume.exp"><code class="xref py py-obj docutils literal notranslate"><span class="pre">exp</span></code></a>()</p></td>
 <td><p>Return copy of this brain data with data exponentiated.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.from_hdf.html#cortex.dataset.Volume.from_hdf" title="cortex.dataset.Volume.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node)</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.from_hdf.html#cortex.dataset.Volume.from_hdf" title="cortex.dataset.Volume.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node[, subject])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.map.html#cortex.dataset.Volume.map" title="cortex.dataset.Volume.map"><code class="xref py py-obj docutils literal notranslate"><span class="pre">map</span></code></a>([projection])</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.get_cmapdict.html#cortex.dataset.Volume.get_cmapdict" title="cortex.dataset.Volume.get_cmapdict"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_cmapdict</span></code></a>()</p></td>
+<td><p>Returns a dictionary with cmap information.</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.map.html#cortex.dataset.Volume.map" title="cortex.dataset.Volume.map"><code class="xref py py-obj docutils literal notranslate"><span class="pre">map</span></code></a>([projection])</p></td>
 <td><p>Convert this VolumeData into VertexData using the given projection  method.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.random.html#cortex.dataset.Volume.random" title="cortex.dataset.Volume.random"><code class="xref py py-obj docutils literal notranslate"><span class="pre">random</span></code></a>(subject, xfmname, **kwargs)</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.random.html#cortex.dataset.Volume.random" title="cortex.dataset.Volume.random"><code class="xref py py-obj docutils literal notranslate"><span class="pre">random</span></code></a>(subject, xfmname, **kwargs)</p></td>
 <td><p>Create a random-valued VolumeData for the given subject and xfmname.</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.save.html#cortex.dataset.Volume.save" title="cortex.dataset.Volume.save"><code class="xref py py-obj docutils literal notranslate"><span class="pre">save</span></code></a>(filename[, name])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.save.html#cortex.dataset.Volume.save" title="cortex.dataset.Volume.save"><code class="xref py py-obj docutils literal notranslate"><span class="pre">save</span></code></a>(filename[, name])</p></td>
 <td><p>Save the dataset into the hdf file <cite>filename</cite> with the provided name.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.save_nii.html#cortex.dataset.Volume.save_nii" title="cortex.dataset.Volume.save_nii"><code class="xref py py-obj docutils literal notranslate"><span class="pre">save_nii</span></code></a>(filename)</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.save_nii.html#cortex.dataset.Volume.save_nii" title="cortex.dataset.Volume.save_nii"><code class="xref py py-obj docutils literal notranslate"><span class="pre">save_nii</span></code></a>(filename)</p></td>
 <td><p>Save as a nifti file at the given filename.</p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.to_json.html#cortex.dataset.Volume.to_json" title="cortex.dataset.Volume.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.to_json.html#cortex.dataset.Volume.to_json" title="cortex.dataset.Volume.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
 <td><p>Creates JSON description of this brain data.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.uniques.html#cortex.dataset.Volume.uniques" title="cortex.dataset.Volume.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.uniques.html#cortex.dataset.Volume.uniques" title="cortex.dataset.Volume.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
 <td><p>TODO: WHAT IS THIS</p></td>
 </tr>
 </tbody>
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Volume/cortex.dataset.Volume.data.html#cortex.dataset.Volume.data" title="cortex.dataset.Volume.data"><code class="xref py py-obj docutils literal notranslate"><span class="pre">data</span></code></a></p></td>
 <td><p></p></td>
@@ -192,7 +186,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -200,8 +194,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -215,11 +209,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.dataset.Volume.rst.txt"
diff --git a/generated/cortex.dataset.Volume2D.html b/generated/cortex.dataset.Volume2D.html
index a48bad554..ce7125064 100644
--- a/generated/cortex.dataset.Volume2D.html
+++ b/generated/cortex.dataset.Volume2D.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.Volume2D &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.Volume2D &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volume2d">
-<h1>cortex.dataset.Volume2D<a class="headerlink" href="#cortex-dataset-volume2d" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.Volume2D<a class="headerlink" href="#cortex-dataset-volume2d" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.dataset.Volume2D">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Volume2D</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/view2D.html#Volume2D"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Volume2D" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">Volume2D</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dim1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmin2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vmax2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/view2D.html#Volume2D"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.Volume2D" title="Link to this definition">¶</a></dt>
 <dd><p>Contains two 3D volumes for simultaneous visualization. Includes information
 on how the volumes should be jointly colormapped.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>dim1</strong><span class="classifier">ndarray or Volume</span></dt><dd><p>The first volume. Can be a 1D or 3D array (see Volume for details), or
 a Volume.</p>
@@ -77,10 +76,6 @@ <h1>cortex.dataset.Volume2D<a class="headerlink" href="#cortex-dataset-volume2d"
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.__init__.html#cortex.dataset.Volume2D.__init__" title="cortex.dataset.Volume2D.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(dim1, dim2[, subject, xfmname, ...])</p></td>
 <td><p></p></td>
@@ -88,23 +83,22 @@ <h1>cortex.dataset.Volume2D<a class="headerlink" href="#cortex-dataset-volume2d"
 <tr class="row-even"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.copy.html#cortex.dataset.Volume2D.copy" title="cortex.dataset.Volume2D.copy"><code class="xref py py-obj docutils literal notranslate"><span class="pre">copy</span></code></a>(*args, **kwargs)</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.from_hdf.html#cortex.dataset.Volume2D.from_hdf" title="cortex.dataset.Volume2D.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node)</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.from_hdf.html#cortex.dataset.Volume2D.from_hdf" title="cortex.dataset.Volume2D.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node[, subject])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.to_json.html#cortex.dataset.Volume2D.to_json" title="cortex.dataset.Volume2D.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.get_cmapdict.html#cortex.dataset.Volume2D.get_cmapdict" title="cortex.dataset.Volume2D.get_cmapdict"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_cmapdict</span></code></a>()</p></td>
+<td><p>Returns a dictionary with cmap information.</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.to_json.html#cortex.dataset.Volume2D.to_json" title="cortex.dataset.Volume2D.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.uniques.html#cortex.dataset.Volume2D.uniques" title="cortex.dataset.Volume2D.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.uniques.html#cortex.dataset.Volume2D.uniques" title="cortex.dataset.Volume2D.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
 <td><p></p></td>
 </tr>
 </tbody>
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Volume2D/cortex.dataset.Volume2D.priority.html#cortex.dataset.Volume2D.priority" title="cortex.dataset.Volume2D.priority"><code class="xref py py-obj docutils literal notranslate"><span class="pre">priority</span></code></a></p></td>
 <td><p></p></td>
@@ -171,7 +165,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -179,8 +173,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -194,11 +188,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.dataset.Volume2D.rst.txt"
diff --git a/generated/cortex.dataset.VolumeRGB.html b/generated/cortex.dataset.VolumeRGB.html
index 459971c8a..99262117c 100644
--- a/generated/cortex.dataset.VolumeRGB.html
+++ b/generated/cortex.dataset.VolumeRGB.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.dataset.VolumeRGB &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
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-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
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-    <script src="../_static/jquery.js"></script>
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-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.dataset.VolumeRGB &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-dataset-volumergb">
-<h1>cortex.dataset.VolumeRGB<a class="headerlink" href="#cortex-dataset-volumergb" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.dataset.VolumeRGB<a class="headerlink" href="#cortex-dataset-volumergb" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.dataset.VolumeRGB">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">VolumeRGB</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">channel1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel1color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(255,</span> <span class="pre">0,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">0,</span> <span class="pre">255)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_color_value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_color_saturation</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_range</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/viewRGB.html#VolumeRGB"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VolumeRGB" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.dataset.</span></span><span class="sig-name descname"><span class="pre">VolumeRGB</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">channel1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">state</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel1color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(255,</span> <span class="pre">0,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel2color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">255,</span> <span class="pre">0)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">channel3color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">(0,</span> <span class="pre">0,</span> <span class="pre">255)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_color_value</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_color_saturation</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1.0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_range</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_vmin</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shared_vmax</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/dataset/viewRGB.html#VolumeRGB"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.dataset.VolumeRGB" title="Link to this definition">¶</a></dt>
 <dd><p>Contains RGB (or RGBA) colors for each voxel in a volumetric dataset.
 Includes information about the subject and transform for the data.</p>
 <p>Three data channels are mapped into a 3D color set. By default the data
@@ -52,7 +51,7 @@ <h1>cortex.dataset.VolumeRGB<a class="headerlink" href="#cortex-dataset-volumerg
 If <cite>shared_range</cite> is True, the vim and vmax will instead computed by
 combining all three data channels.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>channel1</strong><span class="classifier">ndarray or Volume</span></dt><dd><p>Array or Volume for the first data channel for each
 voxel. Can be a 1D or 3D array (see Volume for details), or a Volume.</p>
@@ -91,7 +90,7 @@ <h1>cortex.dataset.VolumeRGB<a class="headerlink" href="#cortex-dataset-volumerg
 <dt><strong>shared_range</strong><span class="classifier">bool</span></dt><dd><p>Use the same vmin and vmax for all three color channels?</p>
 </dd>
 <dt><strong>shared_vmin</strong><span class="classifier">float, optional</span></dt><dd><p>Predetermined shared vmin. Does nothing if shared_range == False. If not given,
-will be the 1st percentil of all values across all three channels.</p>
+will be the 1st percentile of all values across all three channels.</p>
 </dd>
 <dt><strong>shared_vmax</strong><span class="classifier">float, optional</span></dt><dd><p>Predetermined shared vmax. Does nothing if shared_range == False. If not given,
 will be the 99th percentile of all values across all three channels</p>
@@ -104,48 +103,46 @@ <h1>cortex.dataset.VolumeRGB<a class="headerlink" href="#cortex-dataset-volumerg
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.__init__.html#cortex.dataset.VolumeRGB.__init__" title="cortex.dataset.VolumeRGB.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(channel1, channel2, channel3[, ...])</p></td>
 <td><p></p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.color_voxels.html#cortex.dataset.VolumeRGB.color_voxels" title="cortex.dataset.VolumeRGB.color_voxels"><code class="xref py py-obj docutils literal notranslate"><span class="pre">color_voxels</span></code></a>(channel1, channel2, channel3, ...)</p></td>
-<td><p>Colors voxels in 3 color dimensions but not necessarily canonical red, green, and blue Parameters ---------- channel1 : ndarray or Volume     voxel values for first channel channel2 : ndarray or Volume     voxel values for second channel channel3 : ndarray or Volume     voxel values for third channel channel1color : tuple&lt;uint8, uint8, uint8&gt;     color in RGB for first channel channel2color : tuple&lt;uint8, uint8, uint8&gt;     color in RGB for second channel channel3Color : tuple&lt;uint8, uint8, uint8&gt;     color in RGB for third channel value_max : float, optional     Maximum HSV value for voxel colors. If not given, will be the value of     the average of the three channel colors. saturation_max : float [0, 1]     Maximum HSV saturation for voxel colors. common_range : bool     Use the same vmin and vmax for all three color channels? common_min : float, optional     Predetermined shared vmin. Does nothing if shared_range == False. If not given,     will be the 1st percentile of all values across all three channels. common_max : float, optional     Predetermined shared vmax. Does nothing if shared_range == False. If not given,     will be the 99th percentile of all values across all three channels.</p></td>
+<td><p>Colors voxels in 3 color dimensions but not necessarily canonical red, green, and blue Parameters ---------- channel1 : ndarray or Volume     voxel values for first channel channel2 : ndarray or Volume     voxel values for second channel channel3 : ndarray or Volume     voxel values for third channel channel1color : tuple&lt;uint8, uint8, uint8&gt;     color in RGB for first channel channel2color : tuple&lt;uint8, uint8, uint8&gt;     color in RGB for second channel channel3Color : tuple&lt;uint8, uint8, uint8&gt;     color in RGB for third channel value_max : float, optional     Maximum HSV value for voxel colors. If not given, will be the value of     the average of the three channel colors. saturation_max : float [0, 1]     Maximum HSV saturation for voxel colors. common_range : bool     Use the same vmin and vmax for all three color channels? common_min : float, optional     Predetermined shared vmin. Does nothing if shared_range == False. If not given,     will be the 1st percentile of all values across all three channels. common_max : float, optional     Predetermined shared vmax. Does nothing if shared_range == False. If not given,     will be the 99th percentile of all values across all three channels alpha : ndarray or Volume, optional     Alpha values for each voxel. If None, alpha is set to 1 for all voxels. .</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.copy.html#cortex.dataset.VolumeRGB.copy" title="cortex.dataset.VolumeRGB.copy"><code class="xref py py-obj docutils literal notranslate"><span class="pre">copy</span></code></a>(*args, **kwargs)</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.from_hdf.html#cortex.dataset.VolumeRGB.from_hdf" title="cortex.dataset.VolumeRGB.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node)</p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.from_hdf.html#cortex.dataset.VolumeRGB.from_hdf" title="cortex.dataset.VolumeRGB.from_hdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">from_hdf</span></code></a>(node[, subject])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.to_json.html#cortex.dataset.VolumeRGB.to_json" title="cortex.dataset.VolumeRGB.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.html#cortex.dataset.VolumeRGB.get_cmapdict" title="cortex.dataset.VolumeRGB.get_cmapdict"><code class="xref py py-obj docutils literal notranslate"><span class="pre">get_cmapdict</span></code></a>()</p></td>
+<td><p>Returns a dictionary with cmap information.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.to_json.html#cortex.dataset.VolumeRGB.to_json" title="cortex.dataset.VolumeRGB.to_json"><code class="xref py py-obj docutils literal notranslate"><span class="pre">to_json</span></code></a>([simple])</p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.uniques.html#cortex.dataset.VolumeRGB.uniques" title="cortex.dataset.VolumeRGB.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.uniques.html#cortex.dataset.VolumeRGB.uniques" title="cortex.dataset.VolumeRGB.uniques"><code class="xref py py-obj docutils literal notranslate"><span class="pre">uniques</span></code></a>([collapse])</p></td>
 <td><p></p></td>
 </tr>
 </tbody>
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.name.html#cortex.dataset.VolumeRGB.name" title="cortex.dataset.VolumeRGB.name"><code class="xref py py-obj docutils literal notranslate"><span class="pre">name</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.alpha.html#cortex.dataset.VolumeRGB.alpha" title="cortex.dataset.VolumeRGB.alpha"><code class="xref py py-obj docutils literal notranslate"><span class="pre">alpha</span></code></a></p></td>
+<td><p>Compute alpha transparency</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.name.html#cortex.dataset.VolumeRGB.name" title="cortex.dataset.VolumeRGB.name"><code class="xref py py-obj docutils literal notranslate"><span class="pre">name</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.priority.html#cortex.dataset.VolumeRGB.priority" title="cortex.dataset.VolumeRGB.priority"><code class="xref py py-obj docutils literal notranslate"><span class="pre">priority</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.priority.html#cortex.dataset.VolumeRGB.priority" title="cortex.dataset.VolumeRGB.priority"><code class="xref py py-obj docutils literal notranslate"><span class="pre">priority</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.raw.html#cortex.dataset.VolumeRGB.raw" title="cortex.dataset.VolumeRGB.raw"><code class="xref py py-obj docutils literal notranslate"><span class="pre">raw</span></code></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.raw.html#cortex.dataset.VolumeRGB.raw" title="cortex.dataset.VolumeRGB.raw"><code class="xref py py-obj docutils literal notranslate"><span class="pre">raw</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.volume.html#cortex.dataset.VolumeRGB.volume" title="cortex.dataset.VolumeRGB.volume"><code class="xref py py-obj docutils literal notranslate"><span class="pre">volume</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="VolumeRGB/cortex.dataset.VolumeRGB.volume.html#cortex.dataset.VolumeRGB.volume" title="cortex.dataset.VolumeRGB.volume"><code class="xref py py-obj docutils literal notranslate"><span class="pre">volume</span></code></a></p></td>
 <td><p>5-dimensional volume (t, z, y, x, rgba) with data that has been mapped into 8-bit unsigned integers that correspond to colors.</p></td>
 </tr>
 </tbody>
@@ -201,7 +198,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -209,8 +206,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -224,11 +221,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.dataset.VolumeRGB.rst.txt"
diff --git a/generated/cortex.freesurfer.SpringLayout.html b/generated/cortex.freesurfer.SpringLayout.html
index 0bb3e36e5..de28e61c4 100644
--- a/generated/cortex.freesurfer.SpringLayout.html
+++ b/generated/cortex.freesurfer.SpringLayout.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.SpringLayout &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.SpringLayout &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,21 +35,17 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-springlayout">
-<h1>cortex.freesurfer.SpringLayout<a class="headerlink" href="#cortex-freesurfer-springlayout" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.SpringLayout<a class="headerlink" href="#cortex-freesurfer-springlayout" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.freesurfer.SpringLayout">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">SpringLayout</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pins</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stepsize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">neighborhood</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#SpringLayout"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.SpringLayout" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">SpringLayout</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pins</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stepsize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">neighborhood</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#SpringLayout"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.SpringLayout" title="Link to this definition">¶</a></dt>
 <dd><dl class="py method">
 <dt class="sig sig-object py" id="cortex.freesurfer.SpringLayout.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pins</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stepsize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">neighborhood</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#SpringLayout.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.SpringLayout.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pins</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">stepsize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">neighborhood</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#SpringLayout.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.SpringLayout.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="#cortex.freesurfer.SpringLayout.__init__" title="cortex.freesurfer.SpringLayout.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(pts, polys[, dpts, pins, stepsize, ...])</p></td>
 <td><p></p></td>
@@ -117,7 +112,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -125,8 +120,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -140,11 +135,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.SpringLayout.rst.txt"
diff --git a/generated/cortex.freesurfer.autorecon.html b/generated/cortex.freesurfer.autorecon.html
index f3abded67..592b15fc2 100644
--- a/generated/cortex.freesurfer.autorecon.html
+++ b/generated/cortex.freesurfer.autorecon.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.autorecon &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.autorecon &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-autorecon">
-<h1>cortex.freesurfer.autorecon<a class="headerlink" href="#cortex-freesurfer-autorecon" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.autorecon<a class="headerlink" href="#cortex-freesurfer-autorecon" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.autorecon">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">autorecon</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'all'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parallel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_cores</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#autorecon"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.autorecon" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">autorecon</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'all'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parallel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_cores</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#autorecon"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.autorecon" title="Link to this definition">¶</a></dt>
 <dd><p>Run Freesurfer’s autorecon-all command for a given freesurfer subject</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>fs_subject</strong><span class="classifier">string</span></dt><dd><p>Freesurfer subject ID (should be a folder in your freesurfer $SUBJECTS_DIR)</p>
 </dd>
@@ -102,7 +101,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -110,8 +109,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -125,11 +124,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.autorecon.rst.txt"
diff --git a/generated/cortex.freesurfer.flatten.html b/generated/cortex.freesurfer.flatten.html
index 9064f194a..415d942cf 100644
--- a/generated/cortex.freesurfer.flatten.html
+++ b/generated/cortex.freesurfer.flatten.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.flatten &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.flatten &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-flatten">
-<h1>cortex.freesurfer.flatten<a class="headerlink" href="#cortex-freesurfer-flatten" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.flatten<a class="headerlink" href="#cortex-freesurfer-flatten" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.flatten">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">flatten</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patch</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">save_every</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#flatten"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.flatten" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">flatten</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patch</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">save_every</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#flatten"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.flatten" title="Link to this definition">¶</a></dt>
 <dd><p>Perform flattening of a brain using freesurfer</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>fs_subject</strong><span class="classifier">str</span></dt><dd><p>Freesurfer subject ID</p>
 </dd>
@@ -58,7 +57,7 @@ <h1>cortex.freesurfer.flatten<a class="headerlink" href="#cortex-freesurfer-flat
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"></dd>
 </dl>
 <p class="rubric">Notes</p>
@@ -119,7 +118,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -127,8 +126,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -142,11 +141,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.flatten.rst.txt"
diff --git a/generated/cortex.freesurfer.get_curv.html b/generated/cortex.freesurfer.get_curv.html
index b1361ec64..76263a6bf 100644
--- a/generated/cortex.freesurfer.get_curv.html
+++ b/generated/cortex.freesurfer.get_curv.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.get_curv &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.get_curv &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-get-curv">
-<h1>cortex.freesurfer.get_curv<a class="headerlink" href="#cortex-freesurfer-get-curv" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.get_curv<a class="headerlink" href="#cortex-freesurfer-get-curv" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.get_curv">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">get_curv</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'wm'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#get_curv"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.get_curv" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">get_curv</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'wm'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#get_curv"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.get_curv" title="Link to this definition">¶</a></dt>
 <dd><p>Load freesurfer curv file for a freesurfer subject</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>fs_subject</strong><span class="classifier">str</span></dt><dd><p>freesurfer subject identifier</p>
 </dd>
@@ -107,7 +106,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -115,8 +114,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -130,11 +129,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.get_curv.rst.txt"
diff --git a/generated/cortex.freesurfer.get_paths.html b/generated/cortex.freesurfer.get_paths.html
index c26448608..d7f1907e8 100644
--- a/generated/cortex.freesurfer.get_paths.html
+++ b/generated/cortex.freesurfer.get_paths.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.get_paths &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.get_paths &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-get-paths">
-<h1>cortex.freesurfer.get_paths<a class="headerlink" href="#cortex-freesurfer-get-paths" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.get_paths<a class="headerlink" href="#cortex-freesurfer-get-paths" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.get_paths">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">get_paths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'patch'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#get_paths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.get_paths" title="Permalink to this definition">¶</a></dt>
-<dd><p>Retrive paths for all surfaces for a subject processed by freesurfer</p>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">get_paths</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'patch'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#get_paths"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.get_paths" title="Link to this definition">¶</a></dt>
+<dd><p>Retrieve paths for all surfaces for a subject processed by freesurfer</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">string</span></dt><dd><p>Subject ID for freesurfer subject</p>
 </dd>
@@ -108,7 +107,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -116,8 +115,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -131,11 +130,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.get_paths.rst.txt"
diff --git a/generated/cortex.freesurfer.get_surf.html b/generated/cortex.freesurfer.get_surf.html
index 9529c9f4c..0ee9404aa 100644
--- a/generated/cortex.freesurfer.get_surf.html
+++ b/generated/cortex.freesurfer.get_surf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.get_surf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.get_surf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-get-surf">
-<h1>cortex.freesurfer.get_surf<a class="headerlink" href="#cortex-freesurfer-get-surf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.get_surf<a class="headerlink" href="#cortex-freesurfer-get-surf" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.get_surf">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">get_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">flatten_step</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#get_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.get_surf" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">get_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">flatten_step</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#get_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.get_surf" title="Link to this definition">¶</a></dt>
 <dd><p>Read freesurfer surface file</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.get_surf.rst.txt"
diff --git a/generated/cortex.freesurfer.import_flat.html b/generated/cortex.freesurfer.import_flat.html
index c7a628629..6dd176e23 100644
--- a/generated/cortex.freesurfer.import_flat.html
+++ b/generated/cortex.freesurfer.import_flat.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.import_flat &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.import_flat &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-import-flat">
-<h1>cortex.freesurfer.import_flat<a class="headerlink" href="#cortex-freesurfer-import-flat" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.import_flat<a class="headerlink" href="#cortex-freesurfer-import-flat" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.import_flat">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">import_flat</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patch</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemis</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">['lh',</span> <span class="pre">'rh']</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cx_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">flat_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'freesurfer'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auto_overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">clean</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#import_flat"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.import_flat" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">import_flat</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patch</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemis</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">['lh',</span> <span class="pre">'rh']</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cx_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">flat_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'freesurfer'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">auto_overwrite</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">clean</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#import_flat"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.import_flat" title="Link to this definition">¶</a></dt>
 <dd><p>Imports a flat brain from freesurfer</p>
 <p>NOTE: This will delete the overlays.svg file for this subject, since THE
 FLATMAPS WILL CHANGE, as well as all cached information (e.g. old flatmap 
 boundaries, roi svg intermediate renders, etc).</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>fs_subject</strong><span class="classifier">str</span></dt><dd><p>Freesurfer subject name</p>
 </dd>
@@ -55,14 +54,14 @@ <h1>cortex.freesurfer.import_flat<a class="headerlink" href="#cortex-freesurfer-
 </dd>
 <dt><strong>cx_subject</strong><span class="classifier">str</span></dt><dd><p>Pycortex subject name</p>
 </dd>
-<dt><strong>freesurfer_subject_dir</strong><span class="classifier">str</span></dt><dd><p>directory for freesurfer subjects. None defaults to evironment variable
+<dt><strong>freesurfer_subject_dir</strong><span class="classifier">str</span></dt><dd><p>directory for freesurfer subjects. None defaults to environment variable
 $SUBJECTS_DIR</p>
 </dd>
 <dt><strong>clean</strong><span class="classifier">bool</span></dt><dd><p>If True, the flat surface is cleaned to remove the disconnected polys.</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"></dd>
 </dl>
 </dd></dl>
@@ -116,7 +115,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -124,8 +123,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -139,11 +138,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.import_flat.rst.txt"
diff --git a/generated/cortex.freesurfer.import_subj.html b/generated/cortex.freesurfer.import_subj.html
index 23073c00b..45c9cf484 100644
--- a/generated/cortex.freesurfer.import_subj.html
+++ b/generated/cortex.freesurfer.import_subj.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.import_subj &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.import_subj &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-import-subj">
-<h1>cortex.freesurfer.import_subj<a class="headerlink" href="#cortex-freesurfer-import-subj" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.import_subj<a class="headerlink" href="#cortex-freesurfer-import-subj" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.import_subj">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">import_subj</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cx_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">whitematter_surf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'smoothwm'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#import_subj"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.import_subj" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">import_subj</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">freesurfer_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pycortex_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">whitematter_surf</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'smoothwm'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#import_subj"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.import_subj" title="Link to this definition">¶</a></dt>
 <dd><p>Imports a subject from freesurfer</p>
 <p>This will overwrite (after giving a warning and an option to continue) the 
 pre-existing subject, including all blender cuts, masks, transforms, etc., and
@@ -47,23 +46,31 @@ <h1>cortex.freesurfer.import_subj<a class="headerlink" href="#cortex-freesurfer-
 the surfinfo/ folder for the subject. All cached files for the subject will be 
 deleted.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
-<dt><strong>fs_subject</strong><span class="classifier">string</span></dt><dd><p>Freesurfer subject name</p>
+<dt><strong>freesurfer_subject</strong><span class="classifier">str</span></dt><dd><p>Freesurfer subject name</p>
 </dd>
-<dt><strong>cx_subject</strong><span class="classifier">string, optional</span></dt><dd><p>Pycortex subject name (These variable names should be changed). By default uses
-the same name as the freesurfer subject. Best to stick to that convention, if 
-possible (your life will go more smoothly.) This optional kwarg is for edge cases.</p>
+<dt><strong>pycortex_subject</strong><span class="classifier">str, optional</span></dt><dd><p>Pycortex subject name. By default it uses the freesurfer subject name. 
+It is advised to stick to that convention, if possible 
+(your life will go more smoothly.)</p>
 </dd>
-<dt><strong>freesurfer_subject_dir</strong><span class="classifier">string, optional</span></dt><dd><p>Freesurfer subject directory to pull data from. By default uses the directory
+<dt><strong>freesurfer_subject_dir</strong><span class="classifier">str, optional</span></dt><dd><p>Freesurfer subject directory to pull data from. By default uses the directory
 given by the environment variable $SUBJECTS_DIR.</p>
 </dd>
-<dt><strong>whitematter_surf</strong><span class="classifier">string, optional</span></dt><dd><p>Which whitematter surface to import as ‘wm’. By default uses ‘smoothwm’, but that
-surface is smoothed and may not be appropriate. A good alternative is ‘white’.</p>
+<dt><strong>whitematter_surf</strong><span class="classifier">str, optional</span></dt><dd><p>Which whitematter surface to import as ‘wm’. By default uses ‘smoothwm’, but 
+that surface is smoothed and may not be appropriate. 
+A good alternative is ‘white’.</p>
 </dd>
 </dl>
 </dd>
 </dl>
+<p class="rubric">Notes</p>
+<p>This function uses command line functions from freesurfer, so you should make sure
+to have freesurfer sourced before running this function.</p>
+<p>This function will also generate the fiducial surfaces for the subject, which are
+halfway between the white matter and pial surfaces. The surfaces will be stored
+in the freesurfer subject’s directory. These fiducial surfaces are used for 
+cutting and flattening.</p>
 </dd></dl>
 
 </section>
@@ -115,7 +122,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -123,8 +130,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -138,11 +145,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.import_subj.rst.txt"
diff --git a/generated/cortex.freesurfer.make_fiducial.html b/generated/cortex.freesurfer.make_fiducial.html
index 0a5fe829f..73100fcea 100644
--- a/generated/cortex.freesurfer.make_fiducial.html
+++ b/generated/cortex.freesurfer.make_fiducial.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.make_fiducial &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.make_fiducial &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-make-fiducial">
-<h1>cortex.freesurfer.make_fiducial<a class="headerlink" href="#cortex-freesurfer-make-fiducial" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.make_fiducial<a class="headerlink" href="#cortex-freesurfer-make-fiducial" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.make_fiducial">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">make_fiducial</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#make_fiducial"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.make_fiducial" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">make_fiducial</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#make_fiducial"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.make_fiducial" title="Link to this definition">¶</a></dt>
 <dd><p>Make fiducial surface (halfway between white matter and pial surfaces)</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.make_fiducial.rst.txt"
diff --git a/generated/cortex.freesurfer.parse_curv.html b/generated/cortex.freesurfer.parse_curv.html
index 0212a6e1f..51d5e67f7 100644
--- a/generated/cortex.freesurfer.parse_curv.html
+++ b/generated/cortex.freesurfer.parse_curv.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.parse_curv &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.parse_curv &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
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+    <script src="../_static/doctools.js?v=9a2dae69"></script>
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-parse-curv">
-<h1>cortex.freesurfer.parse_curv<a class="headerlink" href="#cortex-freesurfer-parse-curv" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.parse_curv<a class="headerlink" href="#cortex-freesurfer-parse-curv" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.parse_curv">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">parse_curv</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#parse_curv"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.parse_curv" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">parse_curv</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#parse_curv"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.parse_curv" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
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@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
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-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.parse_curv.rst.txt"
diff --git a/generated/cortex.freesurfer.parse_patch.html b/generated/cortex.freesurfer.parse_patch.html
index bf5b5b072..2b7220724 100644
--- a/generated/cortex.freesurfer.parse_patch.html
+++ b/generated/cortex.freesurfer.parse_patch.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
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@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-parse-patch">
-<h1>cortex.freesurfer.parse_patch<a class="headerlink" href="#cortex-freesurfer-parse-patch" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.parse_patch<a class="headerlink" href="#cortex-freesurfer-parse-patch" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.parse_patch">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">parse_patch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#parse_patch"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.parse_patch" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">parse_patch</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#parse_patch"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.parse_patch" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.parse_patch.rst.txt"
diff --git a/generated/cortex.freesurfer.parse_surf.html b/generated/cortex.freesurfer.parse_surf.html
index 93b76c85b..f42d42cb4 100644
--- a/generated/cortex.freesurfer.parse_surf.html
+++ b/generated/cortex.freesurfer.parse_surf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.parse_surf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.parse_surf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-parse-surf">
-<h1>cortex.freesurfer.parse_surf<a class="headerlink" href="#cortex-freesurfer-parse-surf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.parse_surf<a class="headerlink" href="#cortex-freesurfer-parse-surf" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.parse_surf">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">parse_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#parse_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.parse_surf" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">parse_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#parse_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.parse_surf" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.parse_surf.rst.txt"
diff --git a/generated/cortex.freesurfer.read_dot.html b/generated/cortex.freesurfer.read_dot.html
index a05507aad..f7f615508 100644
--- a/generated/cortex.freesurfer.read_dot.html
+++ b/generated/cortex.freesurfer.read_dot.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.read_dot &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.read_dot &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-read-dot">
-<h1>cortex.freesurfer.read_dot<a class="headerlink" href="#cortex-freesurfer-read-dot" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.read_dot<a class="headerlink" href="#cortex-freesurfer-read-dot" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.read_dot">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">read_dot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pts</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#read_dot"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.read_dot" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">read_dot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pts</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#read_dot"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.read_dot" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.read_dot.rst.txt"
diff --git a/generated/cortex.freesurfer.show_surf.html b/generated/cortex.freesurfer.show_surf.html
index 22dc7fc67..37faa715b 100644
--- a/generated/cortex.freesurfer.show_surf.html
+++ b/generated/cortex.freesurfer.show_surf.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.show_surf &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.show_surf &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-show-surf">
-<h1>cortex.freesurfer.show_surf<a class="headerlink" href="#cortex-freesurfer-show-surf" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.show_surf<a class="headerlink" href="#cortex-freesurfer-show-surf" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.show_surf">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">show_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curv</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#show_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.show_surf" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">show_surf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">patch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curv</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#show_surf"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.show_surf" title="Link to this definition">¶</a></dt>
 <dd><p>Show a surface from a Freesurfer subject directory</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Freesurfer subject name</p>
 </dd>
@@ -106,7 +105,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -114,8 +113,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -129,11 +128,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.show_surf.rst.txt"
diff --git a/generated/cortex.freesurfer.stretch_mwall.html b/generated/cortex.freesurfer.stretch_mwall.html
index 7c368863f..f02b5331a 100644
--- a/generated/cortex.freesurfer.stretch_mwall.html
+++ b/generated/cortex.freesurfer.stretch_mwall.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.stretch_mwall &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.stretch_mwall &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-stretch-mwall">
-<h1>cortex.freesurfer.stretch_mwall<a class="headerlink" href="#cortex-freesurfer-stretch-mwall" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.stretch_mwall<a class="headerlink" href="#cortex-freesurfer-stretch-mwall" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.stretch_mwall">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">stretch_mwall</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mwall</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#stretch_mwall"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.stretch_mwall" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">stretch_mwall</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mwall</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#stretch_mwall"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.stretch_mwall" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.stretch_mwall.rst.txt"
diff --git a/generated/cortex.freesurfer.write_decimated.html b/generated/cortex.freesurfer.write_decimated.html
index 480441d29..029f3f49c 100644
--- a/generated/cortex.freesurfer.write_decimated.html
+++ b/generated/cortex.freesurfer.write_decimated.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.write_decimated &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.write_decimated &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-write-decimated">
-<h1>cortex.freesurfer.write_decimated<a class="headerlink" href="#cortex-freesurfer-write-decimated" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.write_decimated<a class="headerlink" href="#cortex-freesurfer-write-decimated" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.write_decimated">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">write_decimated</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#write_decimated"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.write_decimated" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">write_decimated</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">path</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#write_decimated"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.write_decimated" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.write_decimated.rst.txt"
diff --git a/generated/cortex.freesurfer.write_dot.html b/generated/cortex.freesurfer.write_dot.html
index cf5a46abb..df3efc7eb 100644
--- a/generated/cortex.freesurfer.write_dot.html
+++ b/generated/cortex.freesurfer.write_dot.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.freesurfer.write_dot &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.freesurfer.write_dot &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-freesurfer-write-dot">
-<h1>cortex.freesurfer.write_dot<a class="headerlink" href="#cortex-freesurfer-write-dot" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.freesurfer.write_dot<a class="headerlink" href="#cortex-freesurfer-write-dot" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.freesurfer.write_dot">
-<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">write_dot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'test'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#write_dot"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.write_dot" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.freesurfer.</span></span><span class="sig-name descname"><span class="pre">write_dot</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'test'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/freesurfer.html#write_dot"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.freesurfer.write_dot" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.freesurfer.write_dot.rst.txt"
diff --git a/generated/cortex.mapper.Mapper.html b/generated/cortex.mapper.Mapper.html
index 0fce7df49..23c579b63 100644
--- a/generated/cortex.mapper.Mapper.html
+++ b/generated/cortex.mapper.Mapper.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.mapper.Mapper &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.mapper.Mapper &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,22 +35,18 @@
           <div class="body" role="main">
             
   <section id="cortex-mapper-mapper">
-<h1>cortex.mapper.Mapper<a class="headerlink" href="#cortex-mapper-mapper" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.mapper.Mapper<a class="headerlink" href="#cortex-mapper-mapper" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.mapper.Mapper">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.mapper.</span></span><span class="sig-name descname"><span class="pre">Mapper</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">left</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">right</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mapper/mapper.html#Mapper"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mapper.Mapper" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.mapper.</span></span><span class="sig-name descname"><span class="pre">Mapper</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">left</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">right</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mapper/mapper.html#Mapper"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mapper.Mapper" title="Link to this definition">¶</a></dt>
 <dd><p>Maps data from epi volume onto surface using various projections</p>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.mapper.Mapper.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">left</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">right</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mapper/mapper.html#Mapper.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mapper.Mapper.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">left</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">right</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shape</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mapper/mapper.html#Mapper.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mapper.Mapper.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="#cortex.mapper.Mapper.__init__" title="cortex.mapper.Mapper.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(left, right, shape, subject, xfmname)</p></td>
 <td><p></p></td>
@@ -66,10 +61,6 @@ <h1>cortex.mapper.Mapper<a class="headerlink" href="#cortex-mapper-mapper" title
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">hemimasks</span></code></p></td>
 <td><p></p></td>
@@ -130,7 +121,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -138,8 +129,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -153,11 +144,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.mapper.Mapper.rst.txt"
diff --git a/generated/cortex.mapper.get_mapper.html b/generated/cortex.mapper.get_mapper.html
index 666a9898c..461c041ff 100644
--- a/generated/cortex.mapper.get_mapper.html
+++ b/generated/cortex.mapper.get_mapper.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.mapper.get_mapper &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.mapper.get_mapper &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-mapper-get-mapper">
-<h1>cortex.mapper.get_mapper<a class="headerlink" href="#cortex-mapper-get-mapper" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.mapper.get_mapper<a class="headerlink" href="#cortex-mapper-get-mapper" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.mapper.get_mapper">
-<span class="sig-prename descclassname"><span class="pre">cortex.mapper.</span></span><span class="sig-name descname"><span class="pre">get_mapper</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mapper.html#get_mapper"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mapper.get_mapper" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.mapper.</span></span><span class="sig-name descname"><span class="pre">get_mapper</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mapper.html#get_mapper"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mapper.get_mapper" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.mapper.get_mapper.rst.txt"
diff --git a/generated/cortex.mni.compute_mni_transform.html b/generated/cortex.mni.compute_mni_transform.html
index cdce1ef2a..1e47c1721 100644
--- a/generated/cortex.mni.compute_mni_transform.html
+++ b/generated/cortex.mni.compute_mni_transform.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.mni.compute_mni_transform &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.mni.compute_mni_transform &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-mni-compute-mni-transform">
-<h1>cortex.mni.compute_mni_transform<a class="headerlink" href="#cortex-mni-compute-mni-transform" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.mni.compute_mni_transform<a class="headerlink" href="#cortex-mni-compute-mni-transform" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.mni.compute_mni_transform">
-<span class="sig-prename descclassname"><span class="pre">cortex.mni.</span></span><span class="sig-name descname"><span class="pre">compute_mni_transform</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mni.html#compute_mni_transform"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mni.compute_mni_transform" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.mni.</span></span><span class="sig-name descname"><span class="pre">compute_mni_transform</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mni.html#compute_mni_transform"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mni.compute_mni_transform" title="Link to this definition">¶</a></dt>
 <dd><p>Compute transform from the space specified by <cite>xfm</cite> to MNI standard space.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier</p>
 </dd>
@@ -52,7 +51,7 @@ <h1>cortex.mni.compute_mni_transform<a class="headerlink" href="#cortex-mni-comp
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>numpy.ndarray</dt><dd><p>Transformation matrix from the space specified by <cite>xfm</cite> to MNI space.</p>
 </dd>
@@ -110,7 +109,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -118,8 +117,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -133,11 +132,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.mni.compute_mni_transform.rst.txt"
diff --git a/generated/cortex.mni.transform_mni_to_subject.html b/generated/cortex.mni.transform_mni_to_subject.html
index f4f7a3d8b..a1b533c6f 100644
--- a/generated/cortex.mni.transform_mni_to_subject.html
+++ b/generated/cortex.mni.transform_mni_to_subject.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.mni.transform_mni_to_subject &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.mni.transform_mni_to_subject &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
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+    <script src="../_static/doctools.js?v=9a2dae69"></script>
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     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-mni-transform-mni-to-subject">
-<h1>cortex.mni.transform_mni_to_subject<a class="headerlink" href="#cortex-mni-transform-mni-to-subject" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.mni.transform_mni_to_subject<a class="headerlink" href="#cortex-mni-transform-mni-to-subject" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.mni.transform_mni_to_subject">
-<span class="sig-prename descclassname"><span class="pre">cortex.mni.</span></span><span class="sig-name descname"><span class="pre">transform_mni_to_subject</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">volarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">func_to_mni</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mni.html#transform_mni_to_subject"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mni.transform_mni_to_subject" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.mni.</span></span><span class="sig-name descname"><span class="pre">transform_mni_to_subject</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">volarray</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">func_to_mni</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mni.html#transform_mni_to_subject"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mni.transform_mni_to_subject" title="Link to this definition">¶</a></dt>
 <dd><p>Transform data in <cite>volarray</cite> from MNI space to functional space specified by <cite>xfm</cite>.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier</p>
 </dd>
@@ -58,7 +57,7 @@ <h1>cortex.mni.transform_mni_to_subject<a class="headerlink" href="#cortex-mni-t
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>nibabel.nifti1.Nifti1Image</dt><dd><p><cite>volarray</cite> after transformation from MNI space to space specified by <cite>xfm</cite>.</p>
 </dd>
@@ -116,7 +115,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -124,8 +123,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -139,11 +138,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.mni.transform_mni_to_subject.rst.txt"
diff --git a/generated/cortex.mni.transform_surface_to_mni.html b/generated/cortex.mni.transform_surface_to_mni.html
index 6fe752069..0f19948a1 100644
--- a/generated/cortex.mni.transform_surface_to_mni.html
+++ b/generated/cortex.mni.transform_surface_to_mni.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.mni.transform_surface_to_mni &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.mni.transform_surface_to_mni &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-mni-transform-surface-to-mni">
-<h1>cortex.mni.transform_surface_to_mni<a class="headerlink" href="#cortex-mni-transform-surface-to-mni" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.mni.transform_surface_to_mni<a class="headerlink" href="#cortex-mni-transform-surface-to-mni" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.mni.transform_surface_to_mni">
-<span class="sig-prename descclassname"><span class="pre">cortex.mni.</span></span><span class="sig-name descname"><span class="pre">transform_surface_to_mni</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surfname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mni.html#transform_surface_to_mni"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mni.transform_surface_to_mni" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.mni.</span></span><span class="sig-name descname"><span class="pre">transform_surface_to_mni</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surfname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mni.html#transform_surface_to_mni"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mni.transform_surface_to_mni" title="Link to this definition">¶</a></dt>
 <dd><p>Transform the surface named <cite>surfname</cite> for subject called <cite>subject</cite> into
 MNI coordinates. Returns [(lpts, lpolys), (rpts, rpolys)].</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject identifier</p>
 </dd>
@@ -51,7 +50,7 @@ <h1>cortex.mni.transform_surface_to_mni<a class="headerlink" href="#cortex-mni-t
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>[(mni_lpts, lpolys), (mni_rpts, rpolys)]</dt><dd><p>MNI-transformed surface in same format returned by db.get_surf.</p>
 </dd>
@@ -109,7 +108,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -117,8 +116,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -132,11 +131,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.mni.transform_surface_to_mni.rst.txt"
diff --git a/generated/cortex.mni.transform_to_mni.html b/generated/cortex.mni.transform_to_mni.html
index 25cb66164..349dfe9f4 100644
--- a/generated/cortex.mni.transform_to_mni.html
+++ b/generated/cortex.mni.transform_to_mni.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.mni.transform_to_mni &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.mni.transform_to_mni &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-mni-transform-to-mni">
-<h1>cortex.mni.transform_to_mni<a class="headerlink" href="#cortex-mni-transform-to-mni" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.mni.transform_to_mni<a class="headerlink" href="#cortex-mni-transform-to-mni" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.mni.transform_to_mni">
-<span class="sig-prename descclassname"><span class="pre">cortex.mni.</span></span><span class="sig-name descname"><span class="pre">transform_to_mni</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volumedata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">func_to_mni</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mni.html#transform_to_mni"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mni.transform_to_mni" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.mni.</span></span><span class="sig-name descname"><span class="pre">transform_to_mni</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volumedata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">func_to_mni</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/mni.html#transform_to_mni"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.mni.transform_to_mni" title="Link to this definition">¶</a></dt>
 <dd><p>Transform data in <cite>volumedata</cite> to MNI space, resample at the resolution of 
 the atlas image.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>volumedata</strong><span class="classifier">VolumeData</span></dt><dd><p>Data to be transformed to MNI space.</p>
 </dd>
@@ -55,7 +54,7 @@ <h1>cortex.mni.transform_to_mni<a class="headerlink" href="#cortex-mni-transform
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt>nibabel.nifti1.Nifti1Image</dt><dd><p><cite>volumedata</cite> after transformation to MNI space.</p>
 </dd>
@@ -113,7 +112,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -121,8 +120,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -136,11 +135,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.mni.transform_to_mni.rst.txt"
diff --git a/generated/cortex.polyutils.Distortion.html b/generated/cortex.polyutils.Distortion.html
index 538f32f25..80cbe68ec 100644
--- a/generated/cortex.polyutils.Distortion.html
+++ b/generated/cortex.polyutils.Distortion.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.polyutils.Distortion &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.polyutils.Distortion &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-distortion">
-<h1>cortex.polyutils.Distortion<a class="headerlink" href="#cortex-polyutils-distortion" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Distortion<a class="headerlink" href="#cortex-polyutils-distortion" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.polyutils.Distortion">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.polyutils.</span></span><span class="sig-name descname"><span class="pre">Distortion</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">flat</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ref</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/polyutils/distortion.html#Distortion"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Distortion" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.polyutils.</span></span><span class="sig-name descname"><span class="pre">Distortion</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">flat</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ref</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/polyutils/distortion.html#Distortion"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Distortion" title="Link to this definition">¶</a></dt>
 <dd><p>Used to compute distortion metrics between fiducial and another (e.g. flat)
 surface.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>flat</strong><span class="classifier">2D ndarray, shape (total_verts, 3)</span></dt><dd><p>Location of each vertex in flatmap space.</p>
 </dd>
@@ -56,10 +55,6 @@ <h1>cortex.polyutils.Distortion<a class="headerlink" href="#cortex-polyutils-dis
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Distortion/cortex.polyutils.Distortion.__init__.html#cortex.polyutils.Distortion.__init__" title="cortex.polyutils.Distortion.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(flat, ref, polys)</p></td>
 <td><p></p></td>
@@ -68,10 +63,6 @@ <h1>cortex.polyutils.Distortion<a class="headerlink" href="#cortex-polyutils-dis
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Distortion/cortex.polyutils.Distortion.areal.html#cortex.polyutils.Distortion.areal" title="cortex.polyutils.Distortion.areal"><code class="xref py py-obj docutils literal notranslate"><span class="pre">areal</span></code></a></p></td>
 <td><p>Compute areal distortion of the flatmap.</p></td>
@@ -132,7 +123,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -140,8 +131,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -155,11 +146,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.polyutils.Distortion.rst.txt"
diff --git a/generated/cortex.polyutils.Surface.html b/generated/cortex.polyutils.Surface.html
index 6d6e62488..46bc82431 100644
--- a/generated/cortex.polyutils.Surface.html
+++ b/generated/cortex.polyutils.Surface.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>cortex.polyutils.Surface &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <title>cortex.polyutils.Surface &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-polyutils-surface">
-<h1>cortex.polyutils.Surface<a class="headerlink" href="#cortex-polyutils-surface" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.polyutils.Surface<a class="headerlink" href="#cortex-polyutils-surface" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.polyutils.Surface">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.polyutils.</span></span><span class="sig-name descname"><span class="pre">Surface</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/polyutils/surface.html#Surface"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.polyutils.</span></span><span class="sig-name descname"><span class="pre">Surface</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pts</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">polys</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/polyutils/surface.html#Surface"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.polyutils.Surface" title="Link to this definition">¶</a></dt>
 <dd><p>Represents a single cortical hemisphere surface. Can be the white matter surface,
 pial surface, fiducial (mid-cortical) surface, inflated surface, flattened surface,
 etc.</p>
 <p>Implements some useful functions for dealing with functions across surfaces.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>pts</strong><span class="classifier">2D ndarray, shape (total_verts, 3)</span></dt><dd><p>Location of each vertex in space (mm). Order is x, y, z.</p>
 </dd>
@@ -56,10 +55,6 @@ <h1>cortex.polyutils.Surface<a class="headerlink" href="#cortex-polyutils-surfac
 </dl>
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Surface/cortex.polyutils.Surface.__init__.html#cortex.polyutils.Surface.__init__" title="cortex.polyutils.Surface.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(pts, polys)</p></td>
 <td><p></p></td>
@@ -146,10 +141,6 @@ <h1>cortex.polyutils.Surface<a class="headerlink" href="#cortex-polyutils-surfac
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="Surface/cortex.polyutils.Surface.adj.html#cortex.polyutils.Surface.adj" title="cortex.polyutils.Surface.adj"><code class="xref py py-obj docutils literal notranslate"><span class="pre">adj</span></code></a></p></td>
 <td><p>Sparse vertex adjacency matrix.</p></td>
@@ -255,7 +246,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -263,8 +254,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -278,11 +269,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.polyutils.Surface.rst.txt"
diff --git a/generated/cortex.quickflat.make_figure.html b/generated/cortex.quickflat.make_figure.html
index da360fe64..b62cd36fd 100644
--- a/generated/cortex.quickflat.make_figure.html
+++ b/generated/cortex.quickflat.make_figure.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.quickflat.make_figure &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.quickflat.make_figure &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-quickflat-make-figure">
-<h1>cortex.quickflat.make_figure<a class="headerlink" href="#cortex-quickflat-make-figure" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.quickflat.make_figure<a class="headerlink" href="#cortex-quickflat-make-figure" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.quickflat.make_figure">
-<span class="sig-prename descclassname"><span class="pre">cortex.quickflat.</span></span><span class="sig-name descname"><span class="pre">make_figure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">braindata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pixelwise</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thick</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">32</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sampler</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1024</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_rois</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_sulci</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_colorbar</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_borders</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_dropout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_curvature</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extra_disp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_connected_vertices</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">linewidth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">linecolor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roifill</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shadow</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labelsize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labelcolor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cutout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fig</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extra_hatch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">colorbar_ticks</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">colorbar_location</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'center'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roi_list</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nanmean</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/quickflat/view.html#make_figure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.quickflat.make_figure" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.quickflat.</span></span><span class="sig-name descname"><span class="pre">make_figure</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">braindata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pixelwise</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">thick</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">32</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sampler</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1024</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0.5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_rois</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_sulci</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_colorbar</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_borders</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_dropout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_curvature</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extra_disp</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_connected_vertices</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">linewidth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">linecolor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roifill</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">shadow</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labelsize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labelcolor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cutout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fig</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">extra_hatch</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">colorbar_ticks</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">colorbar_location</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'center'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roi_list</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nanmean</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/quickflat/view.html#make_figure"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.quickflat.make_figure" title="Link to this definition">¶</a></dt>
 <dd><p>Show a Volume or Vertex on a flatmap with matplotlib.</p>
 <p>Note that <a href="#id1"><span class="problematic" id="id2">**</span></a>kwargs are ONLY present now for backward compatibility / warnings. No kwargs
 should be used.</p>
 <dl class="field-list">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>braindata</strong><span class="classifier">Dataview (e.g. instance of cortex.Volume, cortex.Vertex,…)</span></dt><dd><p>the data you would like to plot on a flatmap</p>
 </dd>
@@ -71,7 +70,7 @@ <h1>cortex.quickflat.make_figure<a class="headerlink" href="#cortex-quickflat-ma
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Other Parameters</dt>
+<dt class="field-even">Other Parameters<span class="colon">:</span></dt>
 <dd class="field-even"><dl>
 <dt><strong>dpi</strong><span class="classifier">int</span></dt><dd><p>DPI of the generated image. Only applies to the scaling of matplotlib elements,
 specifically the colormap</p>
@@ -80,7 +79,7 @@ <h1>cortex.quickflat.make_figure<a class="headerlink" href="#cortex-quickflat-ma
 </dd>
 <dt><strong>linecolor</strong><span class="classifier">tuple of float, optional</span></dt><dd><p>(R, G, B, A) specification of line color</p>
 </dd>
-<dt><strong>roifill</strong><span class="classifier">tuple of float, optional</span></dt><dd><p>(R, G, B, A) sepcification for the fill of each ROI region</p>
+<dt><strong>roifill</strong><span class="classifier">tuple of float, optional</span></dt><dd><p>(R, G, B, A) specification for the fill of each ROI region</p>
 </dd>
 <dt><strong>shadow</strong><span class="classifier">int, optional</span></dt><dd><p>Standard deviation of the gaussian shadow. Set to 0 if you want no shadow</p>
 </dd>
@@ -175,7 +174,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -183,8 +182,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -198,11 +197,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.quickflat.make_figure.rst.txt"
diff --git a/generated/cortex.quickflat.make_png.html b/generated/cortex.quickflat.make_png.html
index 48a775592..23781e80f 100644
--- a/generated/cortex.quickflat.make_png.html
+++ b/generated/cortex.quickflat.make_png.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.quickflat.make_png &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.quickflat.make_png &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-quickflat-make-png">
-<h1>cortex.quickflat.make_png<a class="headerlink" href="#cortex-quickflat-make-png" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.quickflat.make_png<a class="headerlink" href="#cortex-quickflat-make-png" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.quickflat.make_png">
-<span class="sig-prename descclassname"><span class="pre">cortex.quickflat.</span></span><span class="sig-name descname"><span class="pre">make_png</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">braindata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pixelwise</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sampler</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1024</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bgcolor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/quickflat/view.html#make_png"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.quickflat.make_png" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.quickflat.</span></span><span class="sig-name descname"><span class="pre">make_png</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">braindata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pixelwise</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sampler</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1024</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">bgcolor</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dpi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">100</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/quickflat/view.html#make_png"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.quickflat.make_png" title="Link to this definition">¶</a></dt>
 <dd><p>Create a PNG of the VertexData or VolumeData on a flatmap.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>fname</strong><span class="classifier">str</span></dt><dd><p>Filename for where to save the PNG file</p>
 </dd>
@@ -70,7 +69,7 @@ <h1>cortex.quickflat.make_png<a class="headerlink" href="#cortex-quickflat-make-
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Other Parameters</dt>
+<dt class="field-even">Other Parameters<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>dpi</strong><span class="classifier">int</span></dt><dd><p>DPI of the generated image. Only applies to the scaling of matplotlib elements,
 specifically the colormap</p>
@@ -81,7 +80,7 @@ <h1>cortex.quickflat.make_png<a class="headerlink" href="#cortex-quickflat-make-
 </dd>
 <dt><strong>linecolor</strong><span class="classifier">tuple of float, optional</span></dt><dd><p>(R, G, B, A) specification of line color</p>
 </dd>
-<dt><strong>roifill</strong><span class="classifier">tuple of float, optional</span></dt><dd><p>(R, G, B, A) sepcification for the fill of each ROI region</p>
+<dt><strong>roifill</strong><span class="classifier">tuple of float, optional</span></dt><dd><p>(R, G, B, A) specification for the fill of each ROI region</p>
 </dd>
 <dt><strong>shadow</strong><span class="classifier">int, optional</span></dt><dd><p>Standard deviation of the gaussian shadow. Set to 0 if you want no shadow</p>
 </dd>
@@ -143,7 +142,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -151,8 +150,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -166,11 +165,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.quickflat.make_png.rst.txt"
diff --git a/generated/cortex.quickflat.make_svg.html b/generated/cortex.quickflat.make_svg.html
index 3539c5154..def214bd1 100644
--- a/generated/cortex.quickflat.make_svg.html
+++ b/generated/cortex.quickflat.make_svg.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.quickflat.make_svg &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
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-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
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-    <script src="../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.quickflat.make_svg &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-quickflat-make-svg">
-<h1>cortex.quickflat.make_svg<a class="headerlink" href="#cortex-quickflat-make-svg" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.quickflat.make_svg<a class="headerlink" href="#cortex-quickflat-make-svg" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.quickflat.make_svg">
-<span class="sig-prename descclassname"><span class="pre">cortex.quickflat.</span></span><span class="sig-name descname"><span class="pre">make_svg</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">braindata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_curvature</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layers</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">['rois']</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1024</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_dropout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/quickflat/view.html#make_svg"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.quickflat.make_svg" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.quickflat.</span></span><span class="sig-name descname"><span class="pre">make_svg</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">braindata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_curvature</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layers</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">['rois']</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">height</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1024</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">with_dropout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/quickflat/view.html#make_svg"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.quickflat.make_svg" title="Link to this definition">¶</a></dt>
 <dd><p>Save an svg file of the desired flatmap.</p>
 <p>This function creates an SVG file with vector graphic ROIs overlaid on a single png image.
 Ideally, this function would layer different images (curvature, data, dropout, etc), but
 that has been left to implement at a future date if anyone really wants it.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>fname</strong><span class="classifier">string</span></dt><dd><p>file name to save</p>
 </dd>
@@ -122,7 +121,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -130,8 +129,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -145,11 +144,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.quickflat.make_svg.rst.txt"
diff --git a/generated/cortex.segment.cut_surface.html b/generated/cortex.segment.cut_surface.html
index dbaa12ea4..d7f6a63d3 100644
--- a/generated/cortex.segment.cut_surface.html
+++ b/generated/cortex.segment.cut_surface.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.segment.cut_surface &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.segment.cut_surface &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-segment-cut-surface">
-<h1>cortex.segment.cut_surface<a class="headerlink" href="#cortex-segment-cut-surface" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.segment.cut_surface<a class="headerlink" href="#cortex-segment-cut-surface" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.segment.cut_surface">
-<span class="sig-prename descclassname"><span class="pre">cortex.segment.</span></span><span class="sig-name descname"><span class="pre">cut_surface</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cx_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'flatten'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">flatten_with</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'freesurfer'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do_import_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">blender_cmd</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/segment.html#cut_surface"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.segment.cut_surface" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.segment.</span></span><span class="sig-name descname"><span class="pre">cut_surface</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">cx_subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">hemi</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'flatten'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fs_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">freesurfer_subject_dir</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">flatten_with</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'freesurfer'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do_import_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">blender_cmd</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/segment.html#cut_surface"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.segment.cut_surface" title="Link to this definition">¶</a></dt>
 <dd><p>Initializes an interface to cut the segmented surface for flatmapping.
 This function creates or opens a blend file in your filestore which allows
 surfaces to be cut along hand-defined seams. Blender will automatically
@@ -49,7 +48,7 @@ <h1>cortex.segment.cut_surface<a class="headerlink" href="#cortex-segment-cut-su
 the mris_flatten command in freesurfer. The flatmap will be imported once
 that command finishes if <cite>do_import_subject</cite> is True (default value).</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>cx_subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject to edit (pycortex subject ID)</p>
 </dd>
@@ -57,13 +56,14 @@ <h1>cortex.segment.cut_surface<a class="headerlink" href="#cortex-segment-cut-su
 </dd>
 <dt><strong>name</strong><span class="classifier">str, optional</span></dt><dd><p>String name of the current flatten attempt. Defaults to “flatten”</p>
 </dd>
-<dt><strong>data</strong><span class="classifier">Dataview</span></dt><dd><p>A data view object to display on the surface as a cutting guide.</p>
+<dt><strong>data</strong><span class="classifier">Dataview or List(Dataview)</span></dt><dd><p>A data view object or list of data view objects to display on the 
+surface as a cutting guide.</p>
 </dd>
 <dt><strong>fs_subject</strong><span class="classifier">str</span></dt><dd><p>Name of Freesurfer subject (if different from pycortex subject)
 None defaults to <cite>cx_subject</cite></p>
 </dd>
 <dt><strong>freesurfer_subject_dir</strong><span class="classifier">str</span></dt><dd><p>Name of Freesurfer subject directory. None defaults to SUBJECTS_DIR
-environment varible</p>
+environment variable</p>
 </dd>
 <dt><strong>flatten_with</strong><span class="classifier">str</span></dt><dd><p>‘freesurfer’ or ‘SLIM’ - ‘freesurfer’ (default) uses freesurfer’s 
 <cite>mris_flatten</cite> function to flatten the cut surface. ‘SLIM’ uses
@@ -131,7 +131,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -139,8 +139,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -154,11 +154,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.segment.cut_surface.rst.txt"
diff --git a/generated/cortex.segment.fix_pia.html b/generated/cortex.segment.fix_pia.html
index 1a45815fc..3a5620c86 100644
--- a/generated/cortex.segment.fix_pia.html
+++ b/generated/cortex.segment.fix_pia.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.segment.fix_pia &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.segment.fix_pia &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,12 +35,12 @@
           <div class="body" role="main">
             
   <section id="cortex-segment-fix-pia">
-<h1>cortex.segment.fix_pia<a class="headerlink" href="#cortex-segment-fix-pia" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.segment.fix_pia<a class="headerlink" href="#cortex-segment-fix-pia" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.segment.fix_pia">
-<span class="sig-prename descclassname"><span class="pre">cortex.segment.</span></span><span class="sig-name descname"><span class="pre">fix_pia</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/segment.html#fix_pia"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.segment.fix_pia" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.segment.</span></span><span class="sig-name descname"><span class="pre">fix_pia</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/segment.html#fix_pia"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.segment.fix_pia" title="Link to this definition">¶</a></dt>
 <dd><p>Initializes an interface to make pial surface edits.
-This function will open two windows – a tkmedit window that makse the actual edits,
+This function will open two windows – a tkmedit window that makes the actual edits,
 as well as a mayavi window to display the surface. Clicking on the mayavi window
 will drop markers which can be loaded using the “Goto Save Point” button in tkmedit.</p>
 <p>If you wish to load the other hemisphere, simply close the mayavi window and the
@@ -51,7 +50,7 @@ <h1>cortex.segment.fix_pia<a class="headerlink" href="#cortex-segment-fix-pia" t
 When autorecon finishes, the new surfaces are immediately imported into the pycortex
 database.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject to edit</p>
 </dd>
@@ -109,7 +108,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -117,8 +116,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -132,11 +131,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.segment.fix_pia.rst.txt"
diff --git a/generated/cortex.segment.fix_wm.html b/generated/cortex.segment.fix_wm.html
index 95ff11940..803f2d72d 100644
--- a/generated/cortex.segment.fix_wm.html
+++ b/generated/cortex.segment.fix_wm.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.segment.fix_wm &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.segment.fix_wm &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
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     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-segment-fix-wm">
-<h1>cortex.segment.fix_wm<a class="headerlink" href="#cortex-segment-fix-wm" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.segment.fix_wm<a class="headerlink" href="#cortex-segment-fix-wm" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.segment.fix_wm">
-<span class="sig-prename descclassname"><span class="pre">cortex.segment.</span></span><span class="sig-name descname"><span class="pre">fix_wm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/segment.html#fix_wm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.segment.fix_wm" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.segment.</span></span><span class="sig-name descname"><span class="pre">fix_wm</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/segment.html#fix_wm"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.segment.fix_wm" title="Link to this definition">¶</a></dt>
 <dd><p>Initializes an interface to make white matter edits to the surface.
 This will open two windows – a tkmedit window that makes the actual edits,
 as well as a mayavi window to display the surface. Clicking on the mayavi window
@@ -51,7 +50,7 @@ <h1>cortex.segment.fix_wm<a class="headerlink" href="#cortex-segment-fix-wm" tit
 When autorecon finishes, the new surfaces are immediately imported into the pycortex
 database.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject to edit</p>
 </dd>
@@ -109,7 +108,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -117,8 +116,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -132,11 +131,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.segment.fix_wm.rst.txt"
diff --git a/generated/cortex.segment.init_subject.html b/generated/cortex.segment.init_subject.html
index b004a8572..b16e47793 100644
--- a/generated/cortex.segment.init_subject.html
+++ b/generated/cortex.segment.init_subject.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.segment.init_subject &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.segment.init_subject &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
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     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-segment-init-subject">
-<h1>cortex.segment.init_subject<a class="headerlink" href="#cortex-segment-init-subject" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.segment.init_subject<a class="headerlink" href="#cortex-segment-init-subject" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.segment.init_subject">
-<span class="sig-prename descclassname"><span class="pre">cortex.segment.</span></span><span class="sig-name descname"><span class="pre">init_subject</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">filenames</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do_import_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/segment.html#init_subject"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.segment.init_subject" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.segment.</span></span><span class="sig-name descname"><span class="pre">init_subject</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">filenames</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">do_import_subject</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/segment.html#init_subject"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.segment.init_subject" title="Link to this definition">¶</a></dt>
 <dd><p>Run the first initial segmentation for a subject’s anatomy (in Freesurfer).</p>
 <p>This function creates a Freesurfer subject and runs autorecon-all, 
 then (optionally) imports the subject into the pycortex database.</p>
@@ -48,7 +47,7 @@ <h1>cortex.segment.init_subject<a class="headerlink" href="#cortex-segment-init-
 Freesurfer directly (and then import) for advanced recon-all input 
 options; this is just a convenience function.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>The name of the subject (this subject is created in the Freesurfer
 SUBJECTS_DIR)</p>
@@ -118,7 +117,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -126,8 +125,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -141,11 +140,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.segment.init_subject.rst.txt"
diff --git a/generated/cortex.surfinfo.curvature.html b/generated/cortex.surfinfo.curvature.html
index 9c2a678c7..482251665 100644
--- a/generated/cortex.surfinfo.curvature.html
+++ b/generated/cortex.surfinfo.curvature.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.surfinfo.curvature &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.surfinfo.curvature &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-surfinfo-curvature">
-<h1>cortex.surfinfo.curvature<a class="headerlink" href="#cortex-surfinfo-curvature" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.surfinfo.curvature<a class="headerlink" href="#cortex-surfinfo-curvature" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.surfinfo.curvature">
-<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">curvature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#curvature"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.curvature" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">curvature</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#curvature"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.curvature" title="Link to this definition">¶</a></dt>
 <dd><p>Compute smoothed mean curvature of the fiducial surface for the given 
 subject and save it to <cite>outfile</cite>.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>outfile</strong><span class="classifier">str</span></dt><dd><p>Path where the curvature map will be saved as an npz file.</p>
 </dd>
@@ -105,7 +104,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -113,8 +112,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -128,11 +127,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.surfinfo.curvature.rst.txt"
diff --git a/generated/cortex.surfinfo.distortion.html b/generated/cortex.surfinfo.distortion.html
index 25eab30f8..e075a63d1 100644
--- a/generated/cortex.surfinfo.distortion.html
+++ b/generated/cortex.surfinfo.distortion.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.surfinfo.distortion &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.surfinfo.distortion &#8212; pycortex 1.2.8 documentation</title>
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+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-surfinfo-distortion">
-<h1>cortex.surfinfo.distortion<a class="headerlink" href="#cortex-surfinfo-distortion" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.surfinfo.distortion<a class="headerlink" href="#cortex-surfinfo-distortion" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.surfinfo.distortion">
-<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">distortion</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dist_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'areal'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#distortion"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.distortion" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">distortion</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dist_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'areal'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">smooth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#distortion"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.distortion" title="Link to this definition">¶</a></dt>
 <dd><p>Compute distortion of flatmap relative to fiducial surface and save it
 at <cite>outfile</cite>. Several different types of distortion are available:</p>
 <p>‘areal’: computes the areal distortion for each triangle in the flatmap, defined as the
@@ -50,7 +49,7 @@ <h1>cortex.surfinfo.distortion<a class="headerlink" href="#cortex-surfinfo-disto
 the mean squared difference between distances in the fiducial map and distances in
 the flatmap, for each pair of neighboring vertices. See Fishl, Sereno, and Dale, 1999.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>outfile</strong><span class="classifier">str</span></dt><dd><p>Path where the distortion map will be saved as an npz file.</p>
 </dd>
@@ -115,7 +114,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -123,8 +122,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -138,11 +137,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.surfinfo.distortion.rst.txt"
diff --git a/generated/cortex.surfinfo.flat_border.html b/generated/cortex.surfinfo.flat_border.html
index fdb815010..1e1e7ac36 100644
--- a/generated/cortex.surfinfo.flat_border.html
+++ b/generated/cortex.surfinfo.flat_border.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.surfinfo.flat_border &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.surfinfo.flat_border &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-surfinfo-flat-border">
-<h1>cortex.surfinfo.flat_border<a class="headerlink" href="#cortex-surfinfo-flat-border" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.surfinfo.flat_border<a class="headerlink" href="#cortex-surfinfo-flat-border" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.surfinfo.flat_border">
-<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">flat_border</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#flat_border"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.flat_border" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">flat_border</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#flat_border"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.flat_border" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.surfinfo.flat_border.rst.txt"
diff --git a/generated/cortex.surfinfo.thickness.html b/generated/cortex.surfinfo.thickness.html
index dc59204d4..104a7606e 100644
--- a/generated/cortex.surfinfo.thickness.html
+++ b/generated/cortex.surfinfo.thickness.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.surfinfo.thickness &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.surfinfo.thickness &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-surfinfo-thickness">
-<h1>cortex.surfinfo.thickness<a class="headerlink" href="#cortex-surfinfo-thickness" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.surfinfo.thickness<a class="headerlink" href="#cortex-surfinfo-thickness" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.surfinfo.thickness">
-<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">thickness</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#thickness"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.thickness" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">thickness</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#thickness"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.thickness" title="Link to this definition">¶</a></dt>
 <dd><p>Compute cortical thickness as the distance between corresponding pial and 
 white matter vertices for the given subject. Note that this is slightly
 different than the method used by Freesurfer, and will yield ever-so-slightly
 different results.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>outfile</strong><span class="classifier">str</span></dt><dd><p>Path where the thickness map will be saved.</p>
 </dd>
@@ -106,7 +105,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -114,8 +113,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -129,11 +128,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.surfinfo.thickness.rst.txt"
diff --git a/generated/cortex.surfinfo.tissots_indicatrix.html b/generated/cortex.surfinfo.tissots_indicatrix.html
index 6a41d854b..623c833da 100644
--- a/generated/cortex.surfinfo.tissots_indicatrix.html
+++ b/generated/cortex.surfinfo.tissots_indicatrix.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.surfinfo.tissots_indicatrix &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.surfinfo.tissots_indicatrix &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-surfinfo-tissots-indicatrix">
-<h1>cortex.surfinfo.tissots_indicatrix<a class="headerlink" href="#cortex-surfinfo-tissots-indicatrix" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.surfinfo.tissots_indicatrix<a class="headerlink" href="#cortex-surfinfo-tissots-indicatrix" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.surfinfo.tissots_indicatrix">
-<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">tissots_indicatrix</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sub</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">spacing</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#tissots_indicatrix"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.tissots_indicatrix" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.surfinfo.</span></span><span class="sig-name descname"><span class="pre">tissots_indicatrix</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sub</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">radius</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">spacing</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">50</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/surfinfo.html#tissots_indicatrix"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.surfinfo.tissots_indicatrix" title="Link to this definition">¶</a></dt>
 <dd><p>Compute a Tissot’s indicatrix for the given subject and save the result to
 a file. This involves randomly filling in discs of fixed geodesic radius
 on the fiducial surface.</p>
 <p>See <a class="reference external" href="https://en.wikipedia.org/wiki/Tissot's_indicatrix">https://en.wikipedia.org/wiki/Tissot’s_indicatrix</a> for more info.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>outfile</strong><span class="classifier">str</span></dt><dd><p>Path where the indicatrix map will be saved.</p>
 </dd>
@@ -110,7 +109,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -118,8 +117,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -133,11 +132,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.surfinfo.tissots_indicatrix.rst.txt"
diff --git a/generated/cortex.utils.add_roi.html b/generated/cortex.utils.add_roi.html
index b6c31496f..9573f353a 100644
--- a/generated/cortex.utils.add_roi.html
+++ b/generated/cortex.utils.add_roi.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.add_roi &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.add_roi &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-add-roi">
-<h1>cortex.utils.add_roi<a class="headerlink" href="#cortex-utils-add-roi" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.add_roi<a class="headerlink" href="#cortex-utils-add-roi" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.add_roi">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">add_roi</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'new_roi'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">open_inkscape</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">add_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#add_roi"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.add_roi" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">add_roi</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'new_roi'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">open_inkscape</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">add_path</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#add_roi"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.add_roi" title="Link to this definition">¶</a></dt>
 <dd><p>Add new flatmap image to the ROI file for a subject.</p>
 <p>(The subject is specified in creation of the data object)</p>
 <p>Creates a flatmap image from the <cite>data</cite> input, and adds that image as
@@ -49,7 +48,7 @@ <h1>cortex.utils.add_roi<a class="headerlink" href="#cortex-utils-add-roi" title
 localizer contrast (e.g. a t map of Faces &gt; Houses).</p>
 <p>Use the <a href="#id1"><span class="problematic" id="id2">**</span></a>kwargs inputs to specify</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>data</strong><span class="classifier">DataView</span></dt><dd><p>The data used to generate the flatmap image.</p>
 </dd>
@@ -122,7 +121,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -130,8 +129,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -145,11 +144,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.add_roi.rst.txt"
diff --git a/generated/cortex.utils.anat2epispace.html b/generated/cortex.utils.anat2epispace.html
index 56174a58a..aefc8f227 100644
--- a/generated/cortex.utils.anat2epispace.html
+++ b/generated/cortex.utils.anat2epispace.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.anat2epispace &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.anat2epispace &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-anat2epispace">
-<h1>cortex.utils.anat2epispace<a class="headerlink" href="#cortex-utils-anat2epispace" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.anat2epispace<a class="headerlink" href="#cortex-utils-anat2epispace" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.anat2epispace">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">anat2epispace</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">anatdata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#anat2epispace"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.anat2epispace" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">anat2epispace</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">anatdata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#anat2epispace"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.anat2epispace" title="Link to this definition">¶</a></dt>
 <dd><p>Resamples data from anatomical space into epi space</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>anatdata</strong><span class="classifier">ndarray</span></dt><dd><p>data in anatomical space</p>
 </dd>
@@ -54,7 +53,7 @@ <h1>cortex.utils.anat2epispace<a class="headerlink" href="#cortex-utils-anat2epi
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>epidata</strong><span class="classifier">ndarray</span></dt><dd><p>data in EPI space</p>
 </dd>
@@ -112,7 +111,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -120,8 +119,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -135,11 +134,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.anat2epispace.rst.txt"
diff --git a/generated/cortex.utils.get_aseg_mask.html b/generated/cortex.utils.get_aseg_mask.html
index 434b6414b..54a10d281 100644
--- a/generated/cortex.utils.get_aseg_mask.html
+++ b/generated/cortex.utils.get_aseg_mask.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_aseg_mask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_aseg_mask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-aseg-mask">
-<h1>cortex.utils.get_aseg_mask<a class="headerlink" href="#cortex-utils-get-aseg-mask" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_aseg_mask<a class="headerlink" href="#cortex-utils-get-aseg-mask" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_aseg_mask">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_aseg_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">aseg_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_aseg_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_aseg_mask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_aseg_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">aseg_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_aseg_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_aseg_mask" title="Link to this definition">¶</a></dt>
 <dd><p>Return an epi space mask of the given ID from freesurfer’s automatic segmentation</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>pycortex subject ID</p>
 </dd>
@@ -70,7 +69,7 @@ <h1>cortex.utils.get_aseg_mask<a class="headerlink" href="#cortex-utils-get-aseg
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>mask</strong><span class="classifier">array</span></dt><dd><p>array with float or boolean values denoting the location of the requested cortical
 partition.</p>
@@ -131,7 +130,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -139,8 +138,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -154,11 +153,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_aseg_mask.rst.txt"
diff --git a/generated/cortex.utils.get_cmap.html b/generated/cortex.utils.get_cmap.html
index 87b7523ef..d173637d1 100644
--- a/generated/cortex.utils.get_cmap.html
+++ b/generated/cortex.utils.get_cmap.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_cmap &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_cmap &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,19 +35,19 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-cmap">
-<h1>cortex.utils.get_cmap<a class="headerlink" href="#cortex-utils-get-cmap" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_cmap<a class="headerlink" href="#cortex-utils-get-cmap" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_cmap">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_cmap</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_cmap"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_cmap" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_cmap</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_cmap"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_cmap" title="Link to this definition">¶</a></dt>
 <dd><p>Gets a colormaps</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>name</strong><span class="classifier">str</span></dt><dd><p>Name of colormap to get</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>cmap</strong><span class="classifier">ListedColormap</span></dt><dd><p>Matplotlib colormap object</p>
 </dd>
@@ -106,7 +105,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -114,8 +113,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -129,11 +128,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_cmap.rst.txt"
diff --git a/generated/cortex.utils.get_cortical_mask.html b/generated/cortex.utils.get_cortical_mask.html
index 0e165f932..64ba86d6d 100644
--- a/generated/cortex.utils.get_cortical_mask.html
+++ b/generated/cortex.utils.get_cortical_mask.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_cortical_mask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
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-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_cortical_mask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,33 +35,45 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-cortical-mask">
-<h1>cortex.utils.get_cortical_mask<a class="headerlink" href="#cortex-utils-get-cortical-mask" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_cortical_mask<a class="headerlink" href="#cortex-utils-get-cortical-mask" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_cortical_mask">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_cortical_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_cortical_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_cortical_mask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_cortical_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_cortical_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_cortical_mask" title="Link to this definition">¶</a></dt>
 <dd><p>Gets the cortical mask for a particular transform</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><dl class="simple">
+<dl class="field-list">
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
+<dd class="field-odd"><dl>
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject name</p>
 </dd>
 <dt><strong>xfmname</strong><span class="classifier">str</span></dt><dd><p>Transform name</p>
 </dd>
-<dt><strong>type</strong><span class="classifier">str</span></dt><dd><p>Mask type, one of {‘cortical’,’thin’,’thick’, ‘nearest’}. ‘cortical’ is exactly the
-cortical ribbon, between the freesurfer-estimated white matter and pial
-surfaces; ‘thin’ is &lt; 2mm away from fiducial surface; ‘thick’ is &lt; 8mm
-away from fiducial surface.
-‘nearest’ is nearest voxel only (??)</p>
+<dt><strong>type</strong><span class="classifier">str</span></dt><dd><dl>
+<dt>Mask type, one of {“cortical”, “thin”, “thick”, “nearest”, “line_nearest”}.</dt><dd><ul class="simple">
+<li><p>‘cortical’ includes voxels contained within the cortical ribbon,</p></li>
+</ul>
+<p>between the freesurfer-estimated white matter and pial surfaces. 
+- ‘thin’ includes voxels that are &lt; 2mm away from the fiducial surface. 
+- ‘thick’ includes voxels that are &lt; 8mm away from the fiducial surface.
+- ‘nearest’ includes only the voxels overlapping the fiducial surface.
+- ‘line_nearest’ includes all voxels that have any part within the cortical</p>
+<blockquote>
+<div><p>ribbon.</p>
+</div></blockquote>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+</dl>
+</dd>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>mask</strong><span class="classifier">array</span></dt><dd><p>boolean mask array for cortical voxels in functional space</p>
 </dd>
 </dl>
 </dd>
 </dl>
+<p class="rubric">Notes</p>
+<p>“nearest” is a conservative “cortical” mask, while “line_nearest” is a liberal 
+“cortical” mask.</p>
 </dd></dl>
 
 </section>
@@ -114,7 +125,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -122,8 +133,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -137,11 +148,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_cortical_mask.rst.txt"
diff --git a/generated/cortex.utils.get_ctmmap.html b/generated/cortex.utils.get_ctmmap.html
index a422be887..2e1ba541b 100644
--- a/generated/cortex.utils.get_ctmmap.html
+++ b/generated/cortex.utils.get_ctmmap.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_ctmmap &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_ctmmap &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,21 +35,21 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-ctmmap">
-<h1>cortex.utils.get_ctmmap<a class="headerlink" href="#cortex-utils-get-ctmmap" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_ctmmap<a class="headerlink" href="#cortex-utils-get-ctmmap" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_ctmmap">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_ctmmap</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_ctmmap"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_ctmmap" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_ctmmap</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_ctmmap"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_ctmmap" title="Link to this definition">¶</a></dt>
 <dd><dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Subject name</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
-<dt><strong>lnew</strong><span class="classifier"></span></dt><dd></dd>
-<dt><strong>rnew</strong><span class="classifier"></span></dt><dd></dd>
+<dt>lnew</dt><dd></dd>
+<dt>rnew</dt><dd></dd>
 </dl>
 </dd>
 </dl>
@@ -105,7 +104,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -113,8 +112,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -128,11 +127,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_ctmmap.rst.txt"
diff --git a/generated/cortex.utils.get_ctmpack.html b/generated/cortex.utils.get_ctmpack.html
index 866a277d0..69042ae60 100644
--- a/generated/cortex.utils.get_ctmpack.html
+++ b/generated/cortex.utils.get_ctmpack.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_ctmpack &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_ctmpack &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,16 +35,16 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-ctmpack">
-<h1>cortex.utils.get_ctmpack<a class="headerlink" href="#cortex-utils-get-ctmpack" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_ctmpack<a class="headerlink" href="#cortex-utils-get-ctmpack" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_ctmpack">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_ctmpack</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">types</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('inflated',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'raw'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">level</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decimate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">external_svg</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_available</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_ctmpack"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_ctmpack" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_ctmpack</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">types</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('inflated',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'raw'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">level</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decimate</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">external_svg</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_available</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_ctmpack"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_ctmpack" title="Link to this definition">¶</a></dt>
 <dd><p>Creates ctm file for the specified input arguments.</p>
 <p>This is a cached file that specifies (1) the surfaces between which
 to interpolate (<cite>types</cite> argument), (2) the <cite>method</cite> to interpolate
 between surfaces</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of subject in pycortex stored</p>
 </dd>
@@ -70,9 +69,9 @@ <h1>cortex.utils.get_ctmpack<a class="headerlink" href="#cortex-utils-get-ctmpac
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
-<dt><strong>ctmfile</strong><span class="classifier"></span></dt><dd></dd>
+<dt>ctmfile</dt><dd></dd>
 </dl>
 </dd>
 </dl>
@@ -127,7 +126,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -135,8 +134,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -150,11 +149,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_ctmpack.rst.txt"
diff --git a/generated/cortex.utils.get_dropout.html b/generated/cortex.utils.get_dropout.html
index 25cbc6894..91b805eb4 100644
--- a/generated/cortex.utils.get_dropout.html
+++ b/generated/cortex.utils.get_dropout.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_dropout &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_dropout &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-dropout">
-<h1>cortex.utils.get_dropout<a class="headerlink" href="#cortex-utils-get-dropout" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_dropout<a class="headerlink" href="#cortex-utils-get-dropout" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_dropout">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_dropout</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_dropout"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_dropout" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_dropout</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">power</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">20</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_dropout"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_dropout" title="Link to this definition">¶</a></dt>
 <dd><p>Create a dropout Volume showing where EPI signal
 is very low.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of subject</p>
 </dd>
@@ -52,7 +51,7 @@ <h1>cortex.utils.get_dropout<a class="headerlink" href="#cortex-utils-get-dropou
 <dt><strong>power</strong></dt><dd></dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>volume</strong><span class="classifier">dataview</span></dt><dd><p>Pycortex volume of low signal locations</p>
 </dd>
@@ -110,7 +109,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -118,8 +117,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -133,11 +132,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_dropout.rst.txt"
diff --git a/generated/cortex.utils.get_hemi_masks.html b/generated/cortex.utils.get_hemi_masks.html
index 0050585cb..d00f64354 100644
--- a/generated/cortex.utils.get_hemi_masks.html
+++ b/generated/cortex.utils.get_hemi_masks.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_hemi_masks &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_hemi_masks &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-hemi-masks">
-<h1>cortex.utils.get_hemi_masks<a class="headerlink" href="#cortex-utils-get-hemi-masks" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_hemi_masks<a class="headerlink" href="#cortex-utils-get-hemi-masks" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_hemi_masks">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_hemi_masks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_hemi_masks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_hemi_masks" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_hemi_masks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_hemi_masks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_hemi_masks" title="Link to this definition">¶</a></dt>
 <dd><p>Returns a binary mask of the left and right hemisphere
 surface voxels for the given subject.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of subject</p>
 </dd>
@@ -52,7 +51,7 @@ <h1>cortex.utils.get_hemi_masks<a class="headerlink" href="#cortex-utils-get-hem
 <dt><strong>type</strong><span class="classifier">str</span></dt><dd></dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"></dd>
 </dl>
 </dd></dl>
@@ -106,7 +105,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -114,8 +113,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -129,11 +128,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_hemi_masks.rst.txt"
diff --git a/generated/cortex.utils.get_roi_mask.html b/generated/cortex.utils.get_roi_mask.html
index 47e07a17a..8df9bd84f 100644
--- a/generated/cortex.utils.get_roi_mask.html
+++ b/generated/cortex.utils.get_roi_mask.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_roi_mask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_roi_mask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-roi-mask">
-<h1>cortex.utils.get_roi_mask<a class="headerlink" href="#cortex-utils-get-roi-mask" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_roi_mask<a class="headerlink" href="#cortex-utils-get-roi-mask" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_roi_mask">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_roi_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">projection</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_roi_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_roi_mask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_roi_mask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">projection</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'nearest'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_roi_mask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_roi_mask" title="Link to this definition">¶</a></dt>
 <dd><p>Return a mask for the given ROI(s)</p>
 <p>Deprecated - use get_roi_masks()</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of subject</p>
 </dd>
@@ -111,7 +110,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -119,8 +118,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -134,11 +133,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_roi_mask.rst.txt"
diff --git a/generated/cortex.utils.get_roi_masks.html b/generated/cortex.utils.get_roi_masks.html
index 423b8e45d..0d5a02f23 100644
--- a/generated/cortex.utils.get_roi_masks.html
+++ b/generated/cortex.utils.get_roi_masks.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_roi_masks &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_roi_masks &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-roi-masks">
-<h1>cortex.utils.get_roi_masks<a class="headerlink" href="#cortex-utils-get-roi-masks" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_roi_masks<a class="headerlink" href="#cortex-utils-get-roi-masks" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_roi_masks">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_roi_masks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roi_list</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">gm_sampler</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'cortical'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">split_lr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">allow_overlap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fail_for_missing_rois</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exclude_empty_rois</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">return_dict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_roi_masks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_roi_masks" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_roi_masks</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roi_list</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">gm_sampler</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'cortical'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">split_lr</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">allow_overlap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fail_for_missing_rois</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">exclude_empty_rois</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">return_dict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_roi_masks"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_roi_masks" title="Link to this definition">¶</a></dt>
 <dd><p>Return a dictionary of roi masks</p>
 <p>This function returns a single 3D array with a separate numerical index for each ROI,</p>
 <dl class="field-list">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl>
 <dt><strong>subject</strong><span class="classifier">string</span></dt><dd><p>pycortex subject ID</p>
 </dd>
@@ -82,7 +81,7 @@ <h1>cortex.utils.get_roi_masks<a class="headerlink" href="#cortex-utils-get-roi-
 voxel (reflecting the fraction of that voxel inside the ROI) unless a threshold
 is provided.</p>
 </dd>
-<dt><strong>threshold</strong><span class="classifier">float [0-1]</span></dt><dd><p>value used to convert probablistic ROI values to a boolean mask for the ROI.</p>
+<dt><strong>threshold</strong><span class="classifier">float [0-1]</span></dt><dd><p>value used to convert probabilistic ROI values to a boolean mask for the ROI.</p>
 </dd>
 <dt><strong>split_lr</strong><span class="classifier">bool</span></dt><dd><p>Whether to separate ROIs in to left and right hemispheres (e.g., ‘V1’ becomes
 ‘V1_L’ and ‘V1_R’)</p>
@@ -101,9 +100,12 @@ <h1>cortex.utils.get_roi_masks<a class="headerlink" href="#cortex-utils-get-roi-
 with integer indices for each ROI (similar to Freesurfer’s aseg masks) and a
 dictionary of how the indices map to ROI names are returned.</p>
 </dd>
+<dt><strong>overlay_file</strong><span class="classifier">str or None</span></dt><dd><p>If None, use the default <cite>overlays.svg</cite> file. Otherwise, use the passed
+overlay file to look for the ROIs.</p>
+</dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>roi_masks</strong><span class="classifier">dict</span></dt><dd><p>Dictionary of arrays; keys are ROI names, values are roi masks.</p>
 </dd>
@@ -180,7 +182,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -188,8 +190,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -203,11 +205,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_roi_masks.rst.txt"
diff --git a/generated/cortex.utils.get_roi_verts.html b/generated/cortex.utils.get_roi_verts.html
index d670cd595..fb98304fa 100644
--- a/generated/cortex.utils.get_roi_verts.html
+++ b/generated/cortex.utils.get_roi_verts.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_roi_verts &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_roi_verts &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-roi-verts">
-<h1>cortex.utils.get_roi_verts<a class="headerlink" href="#cortex-utils-get-roi-verts" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_roi_verts<a class="headerlink" href="#cortex-utils-get-roi-verts" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_roi_verts">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_roi_verts</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_roi_verts"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_roi_verts" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_roi_verts</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">roi</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_roi_verts"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_roi_verts" title="Link to this definition">¶</a></dt>
 <dd><p>Return vertices for the given ROIs, or all ROIs if none are given.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject</p>
 </dd>
@@ -52,9 +51,11 @@ <h1>cortex.utils.get_roi_verts<a class="headerlink" href="#cortex-utils-get-roi-
 <dt><strong>mask</strong><span class="classifier">bool</span></dt><dd><p>if True, return a logical mask across vertices for the roi
 if False, return a list of indices for the ROI</p>
 </dd>
+<dt><strong>overlay_file</strong><span class="classifier">None or str</span></dt><dd><p>Pass another overlays file instead of the default overlays.svg</p>
+</dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>roidict</strong><span class="classifier">dict</span></dt><dd><p>Dictionary of {roi name : roi verts}. ROI verts are for both
 hemispheres, with right hemisphere vertex numbers sequential
@@ -114,7 +115,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -122,8 +123,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -137,11 +138,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_roi_verts.rst.txt"
diff --git a/generated/cortex.utils.get_vox_dist.html b/generated/cortex.utils.get_vox_dist.html
index 31b04179d..288fed4d7 100644
--- a/generated/cortex.utils.get_vox_dist.html
+++ b/generated/cortex.utils.get_vox_dist.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.get_vox_dist &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.get_vox_dist &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,32 +35,31 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-get-vox-dist">
-<h1>cortex.utils.get_vox_dist<a class="headerlink" href="#cortex-utils-get-vox-dist" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.get_vox_dist<a class="headerlink" href="#cortex-utils-get-vox-dist" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.get_vox_dist">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_vox_dist</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surface</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'fiducial'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_dist</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">inf</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_vox_dist"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_vox_dist" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">get_vox_dist</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">surface</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'fiducial'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_dist</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">inf</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#get_vox_dist"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.get_vox_dist" title="Link to this definition">¶</a></dt>
 <dd><p>Get the distance (in mm) from each functional voxel to the closest
 point on the surface.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of the subject</p>
 </dd>
 <dt><strong>xfmname</strong><span class="classifier">str</span></dt><dd><p>Name of the transform</p>
 </dd>
-<dt><strong>shape</strong><span class="classifier">tuple</span></dt><dd><p>Output shape for the mask</p>
-</dd>
 <dt><strong>max_dist</strong><span class="classifier">nonnegative float, optional</span></dt><dd><p>Limit computation to only voxels within <cite>max_dist</cite> mm of the surface.
-Makes computation orders of magnitude faster for high-resolution
-volumes.</p>
+Makes computation orders of magnitude faster for high-resolution volumes.</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
-<dt><strong>dist</strong><span class="classifier">ndarray</span></dt><dd><p>Distance (in mm) to the closest point on the surface</p>
+<dt><strong>dist</strong><span class="classifier">ndarray (z, y, x)</span></dt><dd><p>Array with the same shape as the reference image of <cite>xfmname</cite> containing
+the distance (in mm) of each voxel to the closest point on the surface.</p>
 </dd>
-<dt><strong>argdist</strong><span class="classifier">ndarray</span></dt><dd><p>Point index for the closest point</p>
+<dt><strong>argdist</strong><span class="classifier">ndarray (z, y, x)</span></dt><dd><p>Array with the same shape as the reference image of <cite>xfmname</cite> containing
+for each voxel the index of the closest point on the surface.</p>
 </dd>
 </dl>
 </dd>
@@ -117,7 +115,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -125,8 +123,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -140,11 +138,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.get_vox_dist.rst.txt"
diff --git a/generated/cortex.utils.make_movie.html b/generated/cortex.utils.make_movie.html
index fb0245032..b1582f38c 100644
--- a/generated/cortex.utils.make_movie.html
+++ b/generated/cortex.utils.make_movie.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.make_movie &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.make_movie &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,15 +35,15 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-make-movie">
-<h1>cortex.utils.make_movie<a class="headerlink" href="#cortex-utils-make-movie" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.make_movie<a class="headerlink" href="#cortex-utils-make-movie" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.make_movie">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">make_movie</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">stim</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fps</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">15</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'640x480'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#make_movie"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.make_movie" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">make_movie</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">stim</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">outfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fps</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">15</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">size</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'640x480'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#make_movie"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.make_movie" title="Link to this definition">¶</a></dt>
 <dd><p>Makes an .ogv movie</p>
 <p>A simple wrapper for ffmpeg. Calls:
 “ffmpeg -r {fps} -i {infile} -b 4800k -g 30 -s {size} -vcodec libtheora {outfile}.ogv”</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>stim</strong></dt><dd></dd>
 <dt><strong>outfile</strong><span class="classifier">str</span></dt><dd></dd>
@@ -54,7 +53,7 @@ <h1>cortex.utils.make_movie<a class="headerlink" href="#cortex-utils-make-movie"
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"></dd>
 </dl>
 </dd></dl>
@@ -108,7 +107,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -116,8 +115,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -131,11 +130,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.make_movie.rst.txt"
diff --git a/generated/cortex.utils.vertex_to_voxel.html b/generated/cortex.utils.vertex_to_voxel.html
index b5a611a54..5e47e9aa3 100644
--- a/generated/cortex.utils.vertex_to_voxel.html
+++ b/generated/cortex.utils.vertex_to_voxel.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.utils.vertex_to_voxel &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.utils.vertex_to_voxel &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,18 +35,18 @@
           <div class="body" role="main">
             
   <section id="cortex-utils-vertex-to-voxel">
-<h1>cortex.utils.vertex_to_voxel<a class="headerlink" href="#cortex-utils-vertex-to-voxel" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.utils.vertex_to_voxel<a class="headerlink" href="#cortex-utils-vertex-to-voxel" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.utils.vertex_to_voxel">
-<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">vertex_to_voxel</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#vertex_to_voxel"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.vertex_to_voxel" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.utils.</span></span><span class="sig-name descname"><span class="pre">vertex_to_voxel</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">subject</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/utils.html#vertex_to_voxel"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.utils.vertex_to_voxel" title="Link to this definition">¶</a></dt>
 <dd><dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>subject</strong><span class="classifier">str</span></dt><dd><p>Name of subject</p>
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"></dd>
 </dl>
 </dd></dl>
@@ -101,7 +100,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -109,8 +108,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -124,11 +123,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.utils.vertex_to_voxel.rst.txt"
diff --git a/generated/cortex.volume.anat2epispace.html b/generated/cortex.volume.anat2epispace.html
index 9e75504cd..cf98e61ad 100644
--- a/generated/cortex.volume.anat2epispace.html
+++ b/generated/cortex.volume.anat2epispace.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.anat2epispace &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.anat2epispace &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-anat2epispace">
-<h1>cortex.volume.anat2epispace<a class="headerlink" href="#cortex-volume-anat2epispace" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.anat2epispace<a class="headerlink" href="#cortex-volume-anat2epispace" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.anat2epispace">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">anat2epispace</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">anatdata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#anat2epispace"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.anat2epispace" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">anat2epispace</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">anatdata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#anat2epispace"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.anat2epispace" title="Link to this definition">¶</a></dt>
 <dd><p>Resamples data from anatomical space into epi space</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>anatdata</strong><span class="classifier">ndarray</span></dt><dd><p>data in anatomical space</p>
 </dd>
@@ -54,7 +53,7 @@ <h1>cortex.volume.anat2epispace<a class="headerlink" href="#cortex-volume-anat2e
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>epidata</strong><span class="classifier">ndarray</span></dt><dd><p>data in EPI space</p>
 </dd>
@@ -112,7 +111,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -120,8 +119,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -135,11 +134,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.anat2epispace.rst.txt"
diff --git a/generated/cortex.volume.anat2epispace_fsl.html b/generated/cortex.volume.anat2epispace_fsl.html
index 50817b722..a7bb1ff8c 100644
--- a/generated/cortex.volume.anat2epispace_fsl.html
+++ b/generated/cortex.volume.anat2epispace_fsl.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.anat2epispace_fsl &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.anat2epispace_fsl &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-anat2epispace-fsl">
-<h1>cortex.volume.anat2epispace_fsl<a class="headerlink" href="#cortex-volume-anat2epispace-fsl" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.anat2epispace_fsl<a class="headerlink" href="#cortex-volume-anat2epispace-fsl" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.anat2epispace_fsl">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">anat2epispace_fsl</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#anat2epispace_fsl"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.anat2epispace_fsl" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">anat2epispace_fsl</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subject</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xfmname</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#anat2epispace_fsl"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.anat2epispace_fsl" title="Link to this definition">¶</a></dt>
 <dd><p>Resamples anat-space data into the epi space for the given [subject]
 and transformation [xfm]</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.anat2epispace_fsl.rst.txt"
diff --git a/generated/cortex.volume.epi2anatspace.html b/generated/cortex.volume.epi2anatspace.html
index 4652c76a7..da72ade92 100644
--- a/generated/cortex.volume.epi2anatspace.html
+++ b/generated/cortex.volume.epi2anatspace.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.epi2anatspace &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.epi2anatspace &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,13 +35,13 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-epi2anatspace">
-<h1>cortex.volume.epi2anatspace<a class="headerlink" href="#cortex-volume-epi2anatspace" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.epi2anatspace<a class="headerlink" href="#cortex-volume-epi2anatspace" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.epi2anatspace">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">epi2anatspace</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volumedata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#epi2anatspace"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.epi2anatspace" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">epi2anatspace</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volumedata</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#epi2anatspace"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.epi2anatspace" title="Link to this definition">¶</a></dt>
 <dd><p>Resample an epi volume data into anatomical space using scipy.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>volumedata</strong><span class="classifier">VolumeData</span></dt><dd><p>The input epi volumedata object.</p>
 </dd>
@@ -50,7 +49,7 @@ <h1>cortex.volume.epi2anatspace<a class="headerlink" href="#cortex-volume-epi2an
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>anatspace</strong><span class="classifier">ndarray</span></dt><dd><p>The ND array of the anatomy space data</p>
 </dd>
@@ -108,7 +107,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -116,8 +115,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -131,11 +130,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.epi2anatspace.rst.txt"
diff --git a/generated/cortex.volume.epi2anatspace_fsl.html b/generated/cortex.volume.epi2anatspace_fsl.html
index d48fd580f..fcf42d37b 100644
--- a/generated/cortex.volume.epi2anatspace_fsl.html
+++ b/generated/cortex.volume.epi2anatspace_fsl.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.epi2anatspace_fsl &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.epi2anatspace_fsl &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-epi2anatspace-fsl">
-<h1>cortex.volume.epi2anatspace_fsl<a class="headerlink" href="#cortex-volume-epi2anatspace-fsl" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.epi2anatspace_fsl<a class="headerlink" href="#cortex-volume-epi2anatspace-fsl" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.epi2anatspace_fsl">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">epi2anatspace_fsl</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volumedata</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#epi2anatspace_fsl"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.epi2anatspace_fsl" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">epi2anatspace_fsl</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">volumedata</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#epi2anatspace_fsl"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.epi2anatspace_fsl" title="Link to this definition">¶</a></dt>
 <dd><p>Resamples epi-space [data] into the anatomical space for the given [subject]
 using the given transformation [xfm].</p>
 </dd></dl>
@@ -93,7 +92,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -101,8 +100,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -116,11 +115,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.epi2anatspace_fsl.rst.txt"
diff --git a/generated/cortex.volume.mosaic.html b/generated/cortex.volume.mosaic.html
index d6e6c56f6..dac401ee4 100644
--- a/generated/cortex.volume.mosaic.html
+++ b/generated/cortex.volume.mosaic.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.mosaic &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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-    <script src="../_static/jquery.js"></script>
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-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.mosaic &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-mosaic">
-<h1>cortex.volume.mosaic<a class="headerlink" href="#cortex-volume-mosaic" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.mosaic<a class="headerlink" href="#cortex-volume-mosaic" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.mosaic">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">mosaic</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">show</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#mosaic"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.mosaic" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">mosaic</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dim</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">show</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#mosaic"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.mosaic" title="Link to this definition">¶</a></dt>
 <dd><p>Turns volume data into a mosaic, useful for quickly viewing volumetric data
 with radiological convention (left side of figure is right side of subject).</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>data</strong><span class="classifier">array_like</span></dt><dd><p>3D volumetric data to mosaic</p>
 </dd>
@@ -105,7 +104,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -113,8 +112,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -128,11 +127,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.mosaic.rst.txt"
diff --git a/generated/cortex.volume.show_glass.html b/generated/cortex.volume.show_glass.html
index 60e9025dc..0279a6d12 100644
--- a/generated/cortex.volume.show_glass.html
+++ b/generated/cortex.volume.show_glass.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.show_glass &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.show_glass &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
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-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-show-glass">
-<h1>cortex.volume.show_glass<a class="headerlink" href="#cortex-volume-show-glass" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.show_glass<a class="headerlink" href="#cortex-volume-show-glass" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.show_glass">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">show_glass</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dataview</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pad</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#show_glass"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.show_glass" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">show_glass</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dataview</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pad</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">10</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#show_glass"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.show_glass" title="Link to this definition">¶</a></dt>
 <dd><p>Create a classic “glass brain” view of the data, with the outline</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.show_glass.rst.txt"
diff --git a/generated/cortex.volume.show_mip.html b/generated/cortex.volume.show_mip.html
index 92d24e85e..c57ad200e 100644
--- a/generated/cortex.volume.show_mip.html
+++ b/generated/cortex.volume.show_mip.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.show_mip &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.show_mip &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-show-mip">
-<h1>cortex.volume.show_mip<a class="headerlink" href="#cortex-volume-show-mip" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.show_mip<a class="headerlink" href="#cortex-volume-show-mip" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.show_mip">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">show_mip</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#show_mip"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.show_mip" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">show_mip</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#show_mip"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.show_mip" title="Link to this definition">¶</a></dt>
 <dd><p>Display a maximum intensity projection for the data, using three subplots</p>
 </dd></dl>
 
@@ -92,7 +91,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -100,8 +99,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -115,11 +114,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.show_mip.rst.txt"
diff --git a/generated/cortex.volume.show_slice.html b/generated/cortex.volume.show_slice.html
index 78b3f6f88..5a143b7c2 100644
--- a/generated/cortex.volume.show_slice.html
+++ b/generated/cortex.volume.show_slice.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.show_slice &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.show_slice &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-show-slice">
-<h1>cortex.volume.show_slice<a class="headerlink" href="#cortex-volume-show-slice" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.show_slice<a class="headerlink" href="#cortex-volume-show-slice" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.show_slice">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">show_slice</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dataview</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#show_slice"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.show_slice" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">show_slice</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dataview</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#show_slice"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.show_slice" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 </section>
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.show_slice.rst.txt"
diff --git a/generated/cortex.volume.unmask.html b/generated/cortex.volume.unmask.html
index 8b6e06f13..aa8f0f613 100644
--- a/generated/cortex.volume.unmask.html
+++ b/generated/cortex.volume.unmask.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.volume.unmask &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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-    <script src="../_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.volume.unmask &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,10 +35,10 @@
           <div class="body" role="main">
             
   <section id="cortex-volume-unmask">
-<h1>cortex.volume.unmask<a class="headerlink" href="#cortex-volume-unmask" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.volume.unmask<a class="headerlink" href="#cortex-volume-unmask" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.volume.unmask">
-<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">unmask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mask</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#unmask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.unmask" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.volume.</span></span><span class="sig-name descname"><span class="pre">unmask</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">mask</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/volume.html#unmask"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.volume.unmask" title="Link to this definition">¶</a></dt>
 <dd><p>Unmask the data, assuming it’s been masked. Creates a volume
 the same size as <cite>mask</cite> containing <cite>data</cite> at the locations
 where <cite>mask</cite> is True.</p>
@@ -47,7 +46,7 @@ <h1>cortex.volume.unmask<a class="headerlink" href="#cortex-volume-unmask" title
 the area outside the mask will be filled with zeros.</p>
 <p>Otherwise, a numpy MaskedArray will be returned.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>mask</strong><span class="classifier">array_like</span></dt><dd><p>The data mask</p>
 </dd>
@@ -55,7 +54,7 @@ <h1>cortex.volume.unmask<a class="headerlink" href="#cortex-volume-unmask" title
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Returns</dt>
+<dt class="field-even">Returns<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>unmasked</strong><span class="classifier">array_like</span></dt><dd><p>Volume same size as <cite>mask</cite> but same dtype as <cite>data</cite>.</p>
 </dd>
@@ -113,7 +112,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -121,8 +120,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -136,11 +135,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.volume.unmask.rst.txt"
diff --git a/generated/cortex.webgl.make_static.html b/generated/cortex.webgl.make_static.html
index e11500196..5c731fa51 100644
--- a/generated/cortex.webgl.make_static.html
+++ b/generated/cortex.webgl.make_static.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
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-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.webgl.make_static &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
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+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
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   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-webgl-make-static">
-<h1>cortex.webgl.make_static<a class="headerlink" href="#cortex-webgl-make-static" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.webgl.make_static<a class="headerlink" href="#cortex-webgl-make-static" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.webgl.make_static">
-<span class="sig-prename descclassname"><span class="pre">cortex.webgl.</span></span><span class="sig-name descname"><span class="pre">make_static</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outpath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">types</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('inflated',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'RdBu_r'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'static.html'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">anonymize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_available</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">html_embed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_visible</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('rois',</span> <span class="pre">'sulci')</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labels_visible</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('rois',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">copy_ctmfiles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">title</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Brain'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/webgl/view.html#make_static"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.webgl.make_static" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.webgl.</span></span><span class="sig-name descname"><span class="pre">make_static</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">outpath</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">types</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('inflated',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'RdBu_r'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'static.html'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">anonymize</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_available</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">html_embed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_visible</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('rois',</span> <span class="pre">'sulci')</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labels_visible</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('rois',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">copy_ctmfiles</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">title</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Brain'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/webgl/view.html#make_static"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.webgl.make_static" title="Link to this definition">¶</a></dt>
 <dd><p>Creates a static webGL MRI viewer in your filesystem so that it can easily
-be posted publically for sharing or just saved for later viewing.</p>
+be posted publicly for sharing or just saved for later viewing.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>outpath</strong><span class="classifier">string</span></dt><dd><p>The directory where the static viewer will be saved. Will be created if it
 doesn’t already exist.</p>
@@ -59,7 +58,7 @@ <h1>cortex.webgl.make_static<a class="headerlink" href="#cortex-webgl-make-stati
 <dt><strong>anonymize</strong><span class="classifier">bool, optional</span></dt><dd><p>Whether to rename CTM and SVG files generically, for public distribution.
 Default False</p>
 </dd>
-<dt><strong>overlays_available</strong><span class="classifier">tuple, optional</span></dt><dd><p>Overlays availble in the viewer. If None, then all overlay layers of the
+<dt><strong>overlays_available</strong><span class="classifier">tuple, optional</span></dt><dd><p>Overlays available in the viewer. If None, then all overlay layers of the
 svg file will be potentially available in the viewer (whether initially
 visible or not). This provides the option to include, e.g., only a subset
 of layers for a given static viewer.</p>
@@ -76,7 +75,7 @@ <h1>cortex.webgl.make_static<a class="headerlink" href="#cortex-webgl-make-stati
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Other Parameters</dt>
+<dt class="field-even">Other Parameters<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>types</strong><span class="classifier">tuple, optional</span></dt><dd><p>Types of surfaces to include in addition to the original (fiducial, pial,
 and white matter) and flat surfaces. Default (‘inflated’, )</p>
@@ -98,6 +97,10 @@ <h1>cortex.webgl.make_static<a class="headerlink" href="#cortex-webgl-make-stati
 <dt><strong>title</strong><span class="classifier">str, optional</span></dt><dd><p>The title that is displayed on the viewer website when it is loaded in
 a browser.</p>
 </dd>
+<dt><strong>layout</strong><span class="classifier">None or list of (int, int)</span></dt><dd><p>The layout of the viewer subwindows for showing multiple subjects, passed to
+the template generator. 
+Default to None, corresponding to no subwindows.</p>
+</dd>
 </dl>
 </dd>
 </dl>
@@ -155,7 +158,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -163,8 +166,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -178,11 +181,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.webgl.make_static.rst.txt"
diff --git a/generated/cortex.webgl.show.html b/generated/cortex.webgl.show.html
index feeee03bd..7ef7f4e48 100644
--- a/generated/cortex.webgl.show.html
+++ b/generated/cortex.webgl.show.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.webgl.show &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.webgl.show &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,14 +35,14 @@
           <div class="body" role="main">
             
   <section id="cortex-webgl-show">
-<h1>cortex.webgl.show<a class="headerlink" href="#cortex-webgl-show" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.webgl.show<a class="headerlink" href="#cortex-webgl-show" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cortex.webgl.show">
-<span class="sig-prename descclassname"><span class="pre">cortex.webgl.</span></span><span class="sig-name descname"><span class="pre">show</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">types</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('inflated',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'RdBu_r'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">autoclose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">open_browser</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">port</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pickerfun</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'mixer.html'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_available</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_visible</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('rois',</span> <span class="pre">'sulci')</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labels_visible</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('rois',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">title</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Brain'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/webgl/view.html#show"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.webgl.show" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">cortex.webgl.</span></span><span class="sig-name descname"><span class="pre">show</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">types</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('inflated',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">recache</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmap</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'RdBu_r'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">layout</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">autoclose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">open_browser</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">port</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pickerfun</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">template</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'mixer.html'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_available</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlays_visible</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('rois',</span> <span class="pre">'sulci')</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labels_visible</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">('rois',)</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">overlay_file</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_brightness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_smoothness</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">curvature_contrast</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">title</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Brain'</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/webgl/view.html#show"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.webgl.show" title="Link to this definition">¶</a></dt>
 <dd><p>Creates a webGL MRI viewer that is dynamically served by a tornado server
 running inside the current python process.</p>
 <dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
+<dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><dl class="simple">
 <dt><strong>data</strong><span class="classifier">Dataset object or implicit Dataset</span></dt><dd><p>Dataset object containing all the data you wish to plot. Can be any type
 of implicit dataset, such as a single Volume, Vertex, etc. object or a
@@ -59,7 +58,7 @@ <h1>cortex.webgl.show<a class="headerlink" href="#cortex-webgl-show" title="Perm
 <dt><strong>port</strong><span class="classifier">int or None, optional</span></dt><dd><p>The port that will be used by the server. If None, a random port will be
 selected from the range 1024-65536. Default None</p>
 </dd>
-<dt><strong>pickerfun</strong><span class="classifier">funcion or None, optional</span></dt><dd><p>Should be a function that takes two arguments, a voxel index and a vertex
+<dt><strong>pickerfun</strong><span class="classifier">function or None, optional</span></dt><dd><p>Should be a function that takes two arguments, a voxel index and a vertex
 index. Is called whenever a location on the surface is clicked in the
 viewer. This can be used to print information about individual voxels or
 vertices, plot receptive fields, or many other uses. Default None</p>
@@ -80,7 +79,7 @@ <h1>cortex.webgl.show<a class="headerlink" href="#cortex-webgl-show" title="Perm
 </dd>
 </dl>
 </dd>
-<dt class="field-even">Other Parameters</dt>
+<dt class="field-even">Other Parameters<span class="colon">:</span></dt>
 <dd class="field-even"><dl class="simple">
 <dt><strong>types</strong><span class="classifier">tuple, optional</span></dt><dd><p>Types of surfaces to include in addition to the original (fiducial, pial,
 and white matter) and flat surfaces. Default (‘inflated’, )</p>
@@ -91,11 +90,21 @@ <h1>cortex.webgl.show<a class="headerlink" href="#cortex-webgl-show" title="Perm
 <dt><strong>overlay_file</strong><span class="classifier">str or None, optional</span></dt><dd><p>Custom overlays.svg file to use instead of the default one for this
 subject (if not None). Default None.</p>
 </dd>
+<dt><strong>curvature_brightness</strong><span class="classifier">float or None, optional</span></dt><dd><p>Brightness of curvature overlay. Default None, which uses the value
+specified in the config file.</p>
+</dd>
+<dt><strong>curvature_smoothness</strong><span class="classifier">float or None, optional</span></dt><dd><p>Smoothness of curvature overlay. Default None, which uses the value
+specified in the config file.</p>
+</dd>
+<dt><strong>curvature_contrast</strong><span class="classifier">float or None, optional</span></dt><dd><p>Contrast of curvature overlay. Default None, which uses the value
+specified in the config file.</p>
+</dd>
 <dt><strong>title</strong><span class="classifier">str, optional</span></dt><dd><p>The title that is displayed on the viewer website when it is loaded in
 a browser.</p>
 </dd>
-<dt><strong>layout</strong><span class="classifier">(int, int), optional</span></dt><dd><p>The layout of the viewer subwindows for showing multiple subjects.
-Default None, which selects the layout based on the number of subjects.</p>
+<dt><strong>layout</strong><span class="classifier">None or list of (int, int), optional</span></dt><dd><p>The layout of the viewer subwindows for showing multiple subjects, passed to
+the template generator.
+Default None, corresponding to no subwindows.</p>
 </dd>
 </dl>
 </dd>
@@ -151,7 +160,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -159,8 +168,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -174,11 +183,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.webgl.show.rst.txt"
diff --git a/generated/cortex.xfm.Transform.html b/generated/cortex.xfm.Transform.html
index 2ad7bb726..ae004b951 100644
--- a/generated/cortex.xfm.Transform.html
+++ b/generated/cortex.xfm.Transform.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>cortex.xfm.Transform &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>cortex.xfm.Transform &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,23 +35,19 @@
           <div class="body" role="main">
             
   <section id="cortex-xfm-transform">
-<h1>cortex.xfm.Transform<a class="headerlink" href="#cortex-xfm-transform" title="Permalink to this headline">¶</a></h1>
+<h1>cortex.xfm.Transform<a class="headerlink" href="#cortex-xfm-transform" title="Link to this heading">¶</a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cortex.xfm.Transform">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.xfm.</span></span><span class="sig-name descname"><span class="pre">Transform</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/xfm.html#Transform"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.xfm.Transform" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cortex.xfm.</span></span><span class="sig-name descname"><span class="pre">Transform</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/xfm.html#Transform"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.xfm.Transform" title="Link to this definition">¶</a></dt>
 <dd><p>A standard affine transform. Typically holds a transform from anatomical
 magnet space to epi file space.</p>
 <dl class="py method">
 <dt class="sig sig-object py" id="cortex.xfm.Transform.__init__">
-<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/xfm.html#Transform.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.xfm.Transform.__init__" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xfm</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">reference</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/cortex/xfm.html#Transform.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cortex.xfm.Transform.__init__" title="Link to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <p class="rubric">Methods</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><a class="reference internal" href="#cortex.xfm.Transform.__init__" title="cortex.xfm.Transform.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(xfm, reference)</p></td>
 <td><p></p></td>
@@ -76,10 +71,6 @@ <h1>cortex.xfm.Transform<a class="headerlink" href="#cortex-xfm-transform" title
 </table>
 <p class="rubric">Attributes</p>
 <table class="autosummary longtable docutils align-default">
-<colgroup>
-<col style="width: 10%" />
-<col style="width: 90%" />
-</colgroup>
 <tbody>
 <tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">inv</span></code></p></td>
 <td><p></p></td>
@@ -137,7 +128,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -145,8 +136,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -160,11 +151,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/generated/cortex.xfm.Transform.rst.txt"
diff --git a/genindex.html b/genindex.html
index da92e5e19..94227b393 100644
--- a/genindex.html
+++ b/genindex.html
@@ -1,28 +1,27 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Index &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <title>Index &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="#" />
     <link rel="search" title="Search" href="search.html" />
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -101,6 +100,12 @@ <h2 id="A">A</h2>
 </li>
       <li><a href="generated/Surface/cortex.polyutils.Surface.adj.html#cortex.polyutils.Surface.adj">adj (cortex.polyutils.Surface property)</a>
 </li>
+      <li><a href="generated/VertexRGB/cortex.dataset.VertexRGB.alpha.html#cortex.dataset.VertexRGB.alpha">alpha (cortex.dataset.VertexRGB property)</a>
+
+      <ul>
+        <li><a href="generated/VolumeRGB/cortex.dataset.VolumeRGB.alpha.html#cortex.dataset.VolumeRGB.alpha">(cortex.dataset.VolumeRGB property)</a>
+</li>
+      </ul></li>
       <li><a href="generated/cortex.utils.anat2epispace.html#cortex.utils.anat2epispace">anat2epispace() (in module cortex.utils)</a>
 
       <ul>
@@ -108,11 +113,11 @@ <h2 id="A">A</h2>
 </li>
       </ul></li>
       <li><a href="generated/cortex.volume.anat2epispace_fsl.html#cortex.volume.anat2epispace_fsl">anat2epispace_fsl() (in module cortex.volume)</a>
-</li>
-      <li><a href="generated/Dataset/cortex.dataset.Dataset.append.html#cortex.dataset.Dataset.append">append() (cortex.dataset.Dataset method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="generated/Dataset/cortex.dataset.Dataset.append.html#cortex.dataset.Dataset.append">append() (cortex.dataset.Dataset method)</a>
+</li>
       <li><a href="generated/Surface/cortex.polyutils.Surface.approx_geodesic_distance.html#cortex.polyutils.Surface.approx_geodesic_distance">approx_geodesic_distance() (cortex.polyutils.Surface method)</a>
 </li>
       <li><a href="generated/Distortion/cortex.polyutils.Distortion.areal.html#cortex.polyutils.Distortion.areal">areal (cortex.polyutils.Distortion property)</a>
@@ -404,6 +409,20 @@ <h2 id="G">G</h2>
 </li>
       <li><a href="generated/cortex.utils.get_cmap.html#cortex.utils.get_cmap">get_cmap() (in module cortex.utils)</a>
 </li>
+      <li><a href="generated/Vertex/cortex.dataset.Vertex.get_cmapdict.html#cortex.dataset.Vertex.get_cmapdict">get_cmapdict() (cortex.dataset.Vertex method)</a>
+
+      <ul>
+        <li><a href="generated/Vertex2D/cortex.dataset.Vertex2D.get_cmapdict.html#cortex.dataset.Vertex2D.get_cmapdict">(cortex.dataset.Vertex2D method)</a>
+</li>
+        <li><a href="generated/VertexRGB/cortex.dataset.VertexRGB.get_cmapdict.html#cortex.dataset.VertexRGB.get_cmapdict">(cortex.dataset.VertexRGB method)</a>
+</li>
+        <li><a href="generated/Volume/cortex.dataset.Volume.get_cmapdict.html#cortex.dataset.Volume.get_cmapdict">(cortex.dataset.Volume method)</a>
+</li>
+        <li><a href="generated/Volume2D/cortex.dataset.Volume2D.get_cmapdict.html#cortex.dataset.Volume2D.get_cmapdict">(cortex.dataset.Volume2D method)</a>
+</li>
+        <li><a href="generated/VolumeRGB/cortex.dataset.VolumeRGB.get_cmapdict.html#cortex.dataset.VolumeRGB.get_cmapdict">(cortex.dataset.VolumeRGB method)</a>
+</li>
+      </ul></li>
       <li><a href="generated/Surface/cortex.polyutils.Surface.get_connected_vertices.html#cortex.polyutils.Surface.get_connected_vertices">get_connected_vertices() (cortex.polyutils.Surface method)</a>
 </li>
       <li><a href="generated/Database/cortex.database.Database.get_coords.html#cortex.database.Database.get_coords">get_coords() (cortex.database.Database method)</a>
@@ -428,14 +447,14 @@ <h2 id="G">G</h2>
 </li>
       <li><a href="generated/Surface/cortex.polyutils.Surface.get_geodesic_strip_patch.html#cortex.polyutils.Surface.get_geodesic_strip_patch">get_geodesic_strip_patch() (cortex.polyutils.Surface method)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="generated/Surface/cortex.polyutils.Surface.get_graph.html#cortex.polyutils.Surface.get_graph">get_graph() (cortex.polyutils.Surface method)</a>
 </li>
       <li><a href="generated/cortex.utils.get_hemi_masks.html#cortex.utils.get_hemi_masks">get_hemi_masks() (in module cortex.utils)</a>
 </li>
       <li><a href="generated/cortex.mapper.get_mapper.html#cortex.mapper.get_mapper">get_mapper() (in module cortex.mapper)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="generated/Database/cortex.database.Database.get_mask.html#cortex.database.Database.get_mask">get_mask() (cortex.database.Database method)</a>
 
       <ul>
@@ -922,7 +941,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -930,8 +949,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -945,11 +964,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/index.html b/index.html
index c79260977..477356e46 100644
--- a/index.html
+++ b/index.html
@@ -1,30 +1,29 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Pycortex Documentation &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Pycortex Documentation &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Installation" href="install.html" />
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -37,13 +36,14 @@
           <div class="body" role="main">
             
   <section id="pycortex-documentation">
-<h1>Pycortex Documentation<a class="headerlink" href="#pycortex-documentation" title="Permalink to this headline">¶</a></h1>
-<a class="reference internal image-reference" href="_images/3dhead.png"><img alt="_images/3dhead.png" class="align-center" src="_images/3dhead.png" style="width: 85%;" /></a>
+<h1>Pycortex Documentation<a class="headerlink" href="#pycortex-documentation" title="Link to this heading">¶</a></h1>
+<a class="reference internal image-reference" href="_images/3dhead.png"><img alt="_images/3dhead.png" class="align-center" src="_images/3dhead.png" style="width: 85%;" />
+</a>
 <p>Pycortex is a software package for generating beautiful interactive 3D visualizations of fMRI data projected onto cortical surface models. It can also generate high quality 2D flattened cortical visualizations.</p>
 <p>This documentation is still under development. Please report errors or bugs at <a class="reference external" href="https://github.com/gallantlab/pycortex/issues">https://github.com/gallantlab/pycortex/issues</a>.</p>
 <p>For a list of recent changes, please see the <a class="reference external" href="https://github.com/gallantlab/pycortex/releases/">releases on GitHub</a>.</p>
 <section id="user-guide">
-<h2>User Guide<a class="headerlink" href="#user-guide" title="Permalink to this headline">¶</a></h2>
+<h2>User Guide<a class="headerlink" href="#user-guide" title="Link to this heading">¶</a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="install.html">Installation</a><ul>
@@ -83,36 +83,25 @@ <h2>User Guide<a class="headerlink" href="#user-guide" title="Permalink to this
 </div>
 </section>
 <section id="example-gallery">
-<h2>Example Gallery<a class="headerlink" href="#example-gallery" title="Permalink to this headline">¶</a></h2>
+<h2>Example Gallery<a class="headerlink" href="#example-gallery" title="Link to this heading">¶</a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="auto_examples/index.html">Example Gallery</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#datasets-examples">Datasets Examples</a><ul>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#datasets-examples">Datasets Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#examples-with-fsaverage">Examples with fsaverage</a></li>
 <li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#importing-surfaces-examples">Importing Surfaces Examples</a></li>
-<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#quickflat-examples">Quickflat Examples</a><ul>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#quickstart-examples">Quickstart Examples</a><ul>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#surface-analysis-examples">Surface Analysis Examples</a><ul>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#utility-examples">Utility Examples</a><ul>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#webgl-examples">WebGL Examples</a><ul>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#quickflat-examples">Quickflat Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#quickstart-examples">Quickstart Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#surface-analysis-examples">Surface Analysis Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#utility-examples">Utility Examples</a></li>
+<li class="toctree-l2"><a class="reference internal" href="auto_examples/index.html#webgl-examples">WebGL Examples</a></li>
 </ul>
 </li>
 </ul>
 </div>
 </section>
 <section id="api-reference">
-<h2>API Reference<a class="headerlink" href="#api-reference" title="Permalink to this headline">¶</a></h2>
+<h2>API Reference<a class="headerlink" href="#api-reference" title="Link to this heading">¶</a></h2>
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="api_reference_flat.html">Python API Reference</a><ul>
@@ -143,12 +132,12 @@ <h2>API Reference<a class="headerlink" href="#api-reference" title="Permalink to
 </div>
 </section>
 <section id="citation">
-<h2>Citation<a class="headerlink" href="#citation" title="Permalink to this headline">¶</a></h2>
+<h2>Citation<a class="headerlink" href="#citation" title="Link to this heading">¶</a></h2>
 <p>If you use pycortex in published work, please cite the <a class="reference external" href="http://dx.doi.org/10.3389/fninf.2015.00023">pycortex paper</a>:</p>
 <p><em>Gao JS, Huth AG, Lescroart MD and Gallant JL (2015) Pycortex: an interactive surface visualizer for fMRI. Front. Neuroinform. 9:23. doi: 10.3389/fninf.2015.00023</em></p>
 </section>
 <section id="indices-and-tables">
-<h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this headline">¶</a></h2>
+<h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li>
 <li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
@@ -205,7 +194,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -213,8 +202,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -228,11 +217,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/index.rst.txt"
diff --git a/install.html b/install.html
index f051a45ae..5d80569d8 100644
--- a/install.html
+++ b/install.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Installation &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Installation &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Surface Segmentation and Flattening" href="segmentation_guide.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,7 +37,7 @@
           <div class="body" role="main">
             
   <section id="installation">
-<h1>Installation<a class="headerlink" href="#installation" title="Permalink to this headline">¶</a></h1>
+<h1>Installation<a class="headerlink" href="#installation" title="Link to this heading">¶</a></h1>
 <p>To install the stable release version of pycortex, do the following:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># First, install some required dependencies</span>
 <span class="n">pip</span> <span class="n">install</span> <span class="o">-</span><span class="n">U</span> <span class="n">setuptools</span> <span class="n">wheel</span> <span class="n">numpy</span> <span class="n">cython</span>
@@ -49,16 +48,16 @@ <h1>Installation<a class="headerlink" href="#installation" title="Permalink to t
 <p>If you wish to install the development version of pycortex, you can install it directly from Github.</p>
 <p>To do so, replace the second install line above with the following:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># Install development version of pycortex from github</span>
-<span class="n">pip</span> <span class="n">install</span> <span class="o">-</span><span class="n">U</span> <span class="n">git</span><span class="o">+</span><span class="n">git</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="n">gallantlab</span><span class="o">/</span><span class="n">pycortex</span><span class="o">.</span><span class="n">git</span>
+<span class="n">pip</span> <span class="n">install</span> <span class="o">-</span><span class="n">U</span> <span class="n">git</span><span class="o">+</span><span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="n">gallantlab</span><span class="o">/</span><span class="n">pycortex</span><span class="o">.</span><span class="n">git</span>
 </pre></div>
 </div>
 <section id="optional-dependencies">
-<h2>Optional Dependencies<a class="headerlink" href="#optional-dependencies" title="Permalink to this headline">¶</a></h2>
+<h2>Optional Dependencies<a class="headerlink" href="#optional-dependencies" title="Link to this heading">¶</a></h2>
 <p>For some functionality, you will also need to install <a class="reference external" href="https://inkscape.org/en/">Inkscape</a>, using whatever method is appropriate for your system.</p>
 <p>On Mac OS X you will also need to enable access to Inkscape on the command line, see these <a class="reference external" href="http://wiki.inkscape.org/wiki/index.php/Mac_OS_X#Inkscape_command_line">instructions</a>.</p>
 </section>
 <section id="demo">
-<h2>Demo<a class="headerlink" href="#demo" title="Permalink to this headline">¶</a></h2>
+<h2>Demo<a class="headerlink" href="#demo" title="Link to this heading">¶</a></h2>
 <p>To test if your install went well, you can run the pycortex demo.</p>
 <p>Pycortex is best used with <a class="reference external" href="http://www.ipython.org/">IPython</a></p>
 <p>If you do not already have IPython, you can install it by running:</p>
@@ -74,7 +73,7 @@ <h2>Demo<a class="headerlink" href="#demo" title="Permalink to this headline">¶
 <p>If everything went well, this should pop up a web browser window with a demo subject.</p>
 </section>
 <section id="basic-configuration">
-<h2>Basic Configuration<a class="headerlink" href="#basic-configuration" title="Permalink to this headline">¶</a></h2>
+<h2>Basic Configuration<a class="headerlink" href="#basic-configuration" title="Link to this heading">¶</a></h2>
 <p>Pycortex will automatically create a database filestore when it is first installed. In Linux, this filestore is located at <code class="file docutils literal notranslate"><span class="pre">/usr/local/share/pycortex/</span></code>. On first import, it will also create a configuration file in your user directory which allows you to specify additional options, including alternate filestore locations. In Linux, this user configuration file is located in <code class="file docutils literal notranslate"><span class="pre">~/.config/pycortex/options.cfg</span></code>.</p>
 <p>You can check the location of the filestore after installing by running:</p>
 <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">cortex</span>
@@ -148,7 +147,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -156,8 +155,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -171,11 +170,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/install.rst.txt"
diff --git a/objects.inv b/objects.inv
index 7cb65042c..5c9bfc49e 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/py-modindex.html b/py-modindex.html
index b26168827..3e19eecfc 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Python Module Index &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <title>Python Module Index &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
 
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
 
 
@@ -178,7 +177,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -186,8 +185,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -201,11 +200,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
     </div>
 
diff --git a/rois.html b/rois.html
index 12b3b2ba5..080147dc0 100644
--- a/rois.html
+++ b/rois.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Surface-defined ROIs &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Surface-defined ROIs &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Transform formats" href="transforms.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,7 +37,7 @@
           <div class="body" role="main">
             
   <section id="surface-defined-rois">
-<h1>Surface-defined ROIs<a class="headerlink" href="#surface-defined-rois" title="Permalink to this headline">¶</a></h1>
+<h1>Surface-defined ROIs<a class="headerlink" href="#surface-defined-rois" title="Link to this heading">¶</a></h1>
 <p>pycortex supports a method of defining surface ROIs using Inkscape. The ROIs are rendered as surface textures in the viewers, and roi masks can be extracted using helper functions.</p>
 </section>
 
@@ -91,7 +90,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -99,8 +98,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -114,11 +113,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/rois.rst.txt"
diff --git a/search.html b/search.html
index 79ea9f1a3..6018047c6 100644
--- a/search.html
+++ b/search.html
@@ -1,33 +1,33 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Search &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css" />
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\ No newline at end of file
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-    <script src="_static/jquery.js"></script>
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+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Segmentation Tutorial &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
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   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,20 +35,20 @@
           <div class="body" role="main">
             
   <section id="segmentation-tutorial">
-<h1>Segmentation Tutorial<a class="headerlink" href="#segmentation-tutorial" title="Permalink to this headline">¶</a></h1>
+<h1>Segmentation Tutorial<a class="headerlink" href="#segmentation-tutorial" title="Link to this heading">¶</a></h1>
 <p>In order to plot data, you will need to create surfaces for your particular subject. General surfaces such as fsaverage is NOT recommended, since individual subject anatomay can be highly variable. Averaging across subjects will destroy your signal specificity!  The recommended path for generating surfaces is with <a class="reference external" href="http://surfer.nmr.mgh.harvard.edu/">Freesurfer</a>.</p>
 <p>This document will walk you through a general guide for how to create a Freesurfer surface usable with pycortex.</p>
 <section id="installation">
-<h2>Installation<a class="headerlink" href="#installation" title="Permalink to this headline">¶</a></h2>
+<h2>Installation<a class="headerlink" href="#installation" title="Link to this heading">¶</a></h2>
 <p>Unfortunately, there is no simple unified method for installing Freesurfer on your computer. You will need to download a package, then acquire a (free) registration. For additional instructions, go to <a class="reference external" href="http://surfer.nmr.mgh.harvard.edu/fswiki/Download">http://surfer.nmr.mgh.harvard.edu/fswiki/Download</a>.</p>
 </section>
 <section id="segmentation">
-<h2>Segmentation<a class="headerlink" href="#segmentation" title="Permalink to this headline">¶</a></h2>
+<h2>Segmentation<a class="headerlink" href="#segmentation" title="Link to this heading">¶</a></h2>
 <p>Segmentation is the process of identifying the boundary between white matter and gray matter, and between gray matter and dura. With <a class="reference external" href="http://brainvis.wustl.edu/wiki/index.php/Caret:Download">Caret</a>, only one surface is estimated: the midway point between white matter and pia, also known as the “fiducial” surface. This boundary is converted into a triangular mesh representation using a <a class="reference external" href="http://en.wikipedia.org/wiki/Marching_Cubes">marching cubes</a> algorithm. However, segmenting this boundary is nontrivial.</p>
 <p>Pycortex wraps many of the segmentation steps from <a class="reference external" href="http://surfer.nmr.mgh.harvard.edu/">Freesurfer</a> for a simpler, more integrated process. Generally, the four functions in cortex.segment is all that’s required to go from anatomical image to segmented and flattened surface.</p>
 </section>
 <section id="quickstart">
-<h2>Quickstart<a class="headerlink" href="#quickstart" title="Permalink to this headline">¶</a></h2>
+<h2>Quickstart<a class="headerlink" href="#quickstart" title="Link to this heading">¶</a></h2>
 <blockquote>
 <div><ol class="arabic simple">
 <li><p>Collect a T1 MPRAGE image of the subject. <a class="reference external" href="http://freesurfer.net/fswiki/FreeSurferWiki?action=AttachFile&amp;do=get&amp;target=FreeSurfer_Suggested_Morphometry_Protocols.pdf">Preferred protocols</a>: some variety of multiecho T1.</p></li>
@@ -106,7 +105,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -114,8 +113,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -129,11 +128,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/segmentation.rst.txt"
diff --git a/segmentation_guide.html b/segmentation_guide.html
index ddd62db50..649ed950a 100644
--- a/segmentation_guide.html
+++ b/segmentation_guide.html
@@ -1,22 +1,20 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="./">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Surface Segmentation and Flattening &#8212; pycortex 1.2.4 documentation</title>
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-    <script src="_static/jquery.js"></script>
-    <script src="_static/underscore.js"></script>
-    <script src="_static/doctools.js"></script>
+    <title>Surface Segmentation and Flattening &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery.css?v=61a4c737" />
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+    <script src="_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="_static/doctools.js?v=9a2dae69"></script>
+    <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Surface Database" href="database.html" />
@@ -24,8 +22,9 @@
    
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,7 +37,7 @@
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   <section id="surface-segmentation-and-flattening">
-<h1>Surface Segmentation and Flattening<a class="headerlink" href="#surface-segmentation-and-flattening" title="Permalink to this headline">¶</a></h1>
+<h1>Surface Segmentation and Flattening<a class="headerlink" href="#surface-segmentation-and-flattening" title="Link to this heading">¶</a></h1>
 <p>Welcome! This is a guide for the full process of making flatmaps, which allow us to visualize brain data in a more intuitive way than voxelized 3D images of brain data. There are three main phases of the process:</p>
 <p><strong>1. Segmentation</strong></p>
 <p>Freesurfer will automatically discern where white matter and gray matter are in the brain. The software is good but not perfect, so you will need to look through its results and fine-tune the surfaces it generates so we can generate a 3D model of the brain.</p>
@@ -54,7 +53,7 @@ <h1>Surface Segmentation and Flattening<a class="headerlink" href="#surface-segm
 </div></blockquote>
 <p>If possible, you want to proceed with MEMPRAGE RMS data.</p>
 <section id="starting-setting-up-freesurfer">
-<h2>Starting &amp; Setting up Freesurfer<a class="headerlink" href="#starting-setting-up-freesurfer" title="Permalink to this headline">¶</a></h2>
+<h2>Starting &amp; Setting up Freesurfer<a class="headerlink" href="#starting-setting-up-freesurfer" title="Link to this heading">¶</a></h2>
 <dl class="simple">
 <dt>To open freesurfer:</dt><dd><p><code class="docutils literal notranslate"><span class="pre">source_directory_name_here/SetUpFreeSurfer.sh</span></code></p>
 </dd>
@@ -64,7 +63,7 @@ <h2>Starting &amp; Setting up Freesurfer<a class="headerlink" href="#starting-se
 <p>Create a “subjects” directory. If a “subjects” directory doesn’t exist, make one in the FreeSurfer directory. Freesurfer is finicky about directories, so this step is crucial.</p>
 </section>
 <section id="importing-data-into-freesurfer">
-<h2>Importing Data Into Freesurfer<a class="headerlink" href="#importing-data-into-freesurfer" title="Permalink to this headline">¶</a></h2>
+<h2>Importing Data Into Freesurfer<a class="headerlink" href="#importing-data-into-freesurfer" title="Link to this heading">¶</a></h2>
 <p>After you’ve unpacked the raw data, there are 2 ways to choose from to import your data to into freesurfer:</p>
 <dl class="simple">
 <dt><strong>1. Using .dcm files:</strong> To do this, go into the directory of the dicom files you want to use and then type:</dt><dd><p><code class="docutils literal notranslate"><span class="pre">recon-all</span> <span class="pre">-i</span> <span class="pre">./NameofFirstDicomFile.dcm</span> <span class="pre">-s</span> <span class="pre">&lt;subject_name&gt;</span></code></p>
@@ -82,7 +81,7 @@ <h2>Importing Data Into Freesurfer<a class="headerlink" href="#importing-data-in
 <p>The ‘-s Subject’ portion creates a folder, in this case a folder titled “Subject”. The folder should be named for the subject.</p>
 </section>
 <section id="creating-pial-white-matter-surfaces">
-<h2>Creating Pial &amp; White Matter Surfaces<a class="headerlink" href="#creating-pial-white-matter-surfaces" title="Permalink to this headline">¶</a></h2>
+<h2>Creating Pial &amp; White Matter Surfaces<a class="headerlink" href="#creating-pial-white-matter-surfaces" title="Link to this heading">¶</a></h2>
 <p>Now that the anatomical data for your subject has been imported into Freesurfer and a new
 directory has been created, you next want to run a command called autorecon1 to separate
 the brain from the rest of the anatomy (eyes, muscle, etc.), and then manually check for and
@@ -90,7 +89,7 @@ <h2>Creating Pial &amp; White Matter Surfaces<a class="headerlink" href="#creati
 pial surface as well as the white matter. This is done using the command autorecon2.
 Following this, you will manually make edits to these newly created surfaces.</p>
 <section id="autorecon1-separating-brain-from-other-anatomy">
-<h3>Autorecon1: Separating Brain from Other Anatomy<a class="headerlink" href="#autorecon1-separating-brain-from-other-anatomy" title="Permalink to this headline">¶</a></h3>
+<h3>Autorecon1: Separating Brain from Other Anatomy<a class="headerlink" href="#autorecon1-separating-brain-from-other-anatomy" title="Link to this heading">¶</a></h3>
 <p>The autorecon1 command motion corrects and conforms, normalizes, computes the Talairach transform, and strips the skull. Keep in mind that this command takes approximately 30-40 minutes, so make sure you’re ready before running it. To use the command type:</p>
 <blockquote>
 <div><p><code class="docutils literal notranslate"><span class="pre">recon-all</span> <span class="pre">-autorecon1</span> <span class="pre">-s</span> <span class="pre">&lt;subject_name&gt;</span></code></p>
@@ -100,7 +99,7 @@ <h3>Autorecon1: Separating Brain from Other Anatomy<a class="headerlink" href="#
 </dd>
 </dl>
 <section id="manual-edits-to-the-anatomical">
-<h4>Manual Edits to the Anatomical<a class="headerlink" href="#manual-edits-to-the-anatomical" title="Permalink to this headline">¶</a></h4>
+<h4>Manual Edits to the Anatomical<a class="headerlink" href="#manual-edits-to-the-anatomical" title="Link to this heading">¶</a></h4>
 <p>At this stage, you just want to make sure that autorecon1 ran successfully and that large parts
 of non-brain anatomy were not left behind. If big chunks of eye or skull were left behind, it is
 good to manually delete them yourself. If autorecon1 ran successfully, you can probably skip
@@ -171,7 +170,7 @@ <h4>Manual Edits to the Anatomical<a class="headerlink" href="#manual-edits-to-t
 </section>
 </section>
 <section id="autorecon2-creating-surfaces">
-<h3>Autorecon2: Creating Surfaces<a class="headerlink" href="#autorecon2-creating-surfaces" title="Permalink to this headline">¶</a></h3>
+<h3>Autorecon2: Creating Surfaces<a class="headerlink" href="#autorecon2-creating-surfaces" title="Link to this heading">¶</a></h3>
 <p>Here, you will be creating both white and gray matter surfaces using the autorecon2
 command. When the command is complete, there will be outlines on the brain indicating that
 the program has determined where the pial and white matter surfaces are located. The pial
@@ -266,7 +265,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -274,8 +273,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -289,11 +288,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/segmentation_guide.rst.txt"
diff --git a/sg_execution_times.html b/sg_execution_times.html
new file mode 100644
index 000000000..2193983a1
--- /dev/null
+++ b/sg_execution_times.html
@@ -0,0 +1,326 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="./">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
+
+    <title>Computation times &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
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+    <link rel="stylesheet" type="text/css" href="_static/sg_gallery-dataframe.css?v=2082cf3c" />
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+   
+  <link rel="stylesheet" href="_static/custom.css" type="text/css" />
+  
+
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+  
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+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="computation-times">
+<span id="sphx-glr-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
+<p><strong>05:44.549</strong> total execution time for 44 files <strong>from all galleries</strong>:</p>
+<div class="docutils container">
+<style scoped>
+<link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
+<link href="https://cdn.datatables.net/1.13.6/css/dataTables.bootstrap5.min.css" rel="stylesheet" />
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+<script src="https://cdn.datatables.net/1.13.6/js/dataTables.bootstrap5.min.js"></script>
+<script type="text/javascript" class="init">
+$(document).ready( function () {
+    $('table.sg-datatable').DataTable({order: [[1, 'desc']]});
+} );
+</script><table class="table table-striped sg-datatable docutils align-default">
+<thead>
+<tr class="row-odd"><th class="head"><p>Example</p></th>
+<th class="head"><p>Time</p></th>
+<th class="head"><p>Mem (MB)</p></th>
+</tr>
+</thead>
+<tbody>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_connected_vertices.html#sphx-glr-auto-examples-quickflat-plot-connected-vertices-py"><span class="std std-ref">Plot which vertices are inside the same voxels</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_connected_vertices.py</span></code>)</p></td>
+<td><p>01:06.515</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_zoom_to_roi.html#sphx-glr-auto-examples-quickflat-plot-zoom-to-roi-py"><span class="std std-ref">Plotting a zoomed view of one ROI</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_zoom_to_roi.py</span></code>)</p></td>
+<td><p>00:36.630</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/surface_analyses/plot_tissots_indicatrix.html#sphx-glr-auto-examples-surface-analyses-plot-tissots-indicatrix-py"><span class="std std-ref">Tissot’s Indicatrix</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/surface_analyses/plot_tissots_indicatrix.py</span></code>)</p></td>
+<td><p>00:25.962</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/surface_analyses/plot_flatmap_distortion.html#sphx-glr-auto-examples-surface-analyses-plot-flatmap-distortion-py"><span class="std std-ref">Flatmap Distortion</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/surface_analyses/plot_flatmap_distortion.py</span></code>)</p></td>
+<td><p>00:23.561</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/utils/plot_roi_voxel_index_volume.html#sphx-glr-auto-examples-utils-plot-roi-voxel-index-volume-py"><span class="std std-ref">Get ROI Index Volume</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/utils/plot_roi_voxel_index_volume.py</span></code>)</p></td>
+<td><p>00:22.996</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/surface_analyses/plot_subsurfaces.html#sphx-glr-auto-examples-surface-analyses-plot-subsurfaces-py"><span class="std std-ref">Plot and Use Subsurface Tools</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/surface_analyses/plot_subsurfaces.py</span></code>)</p></td>
+<td><p>00:19.551</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/datasets/plot_dataset_arithmetic.html#sphx-glr-auto-examples-datasets-plot-dataset-arithmetic-py"><span class="std std-ref">Dataset Arithmetic</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/datasets/plot_dataset_arithmetic.py</span></code>)</p></td>
+<td><p>00:14.861</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/surface_analyses/plot_geodesic_distance.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-distance-py"><span class="std std-ref">Plotting Geodesic Distances</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/surface_analyses/plot_geodesic_distance.py</span></code>)</p></td>
+<td><p>00:14.610</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/surface_analyses/plot_interpolate_data.html#sphx-glr-auto-examples-surface-analyses-plot-interpolate-data-py"><span class="std std-ref">Interpolate Data</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/surface_analyses/plot_interpolate_data.py</span></code>)</p></td>
+<td><p>00:11.818</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/datasets/plot_volumeRGB.html#sphx-glr-auto-examples-datasets-plot-volumergb-py"><span class="std std-ref">Plot RGB Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/datasets/plot_volumeRGB.py</span></code>)</p></td>
+<td><p>00:11.075</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_make_gif.html#sphx-glr-auto-examples-quickflat-plot-make-gif-py"><span class="std std-ref">Animate a series of volumes as a GIF</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_make_gif.py</span></code>)</p></td>
+<td><p>00:09.046</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/utils/plot_roi_voxel_mask.html#sphx-glr-auto-examples-utils-plot-roi-voxel-mask-py"><span class="std std-ref">Get ROI Voxel Mask</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/utils/plot_roi_voxel_mask.py</span></code>)</p></td>
+<td><p>00:08.659</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_make_figure.html#sphx-glr-auto-examples-quickflat-plot-make-figure-py"><span class="std std-ref">Plot a 2D static flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_make_figure.py</span></code>)</p></td>
+<td><p>00:08.499</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/surface_analyses/plot_geodesic_path.html#sphx-glr-auto-examples-surface-analyses-plot-geodesic-path-py"><span class="std std-ref">Plotting Geodesic Paths</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/surface_analyses/plot_geodesic_path.py</span></code>)</p></td>
+<td><p>00:07.153</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_sulci.html#sphx-glr-auto-examples-quickflat-plot-sulci-py"><span class="std std-ref">Plot sulci on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_sulci.py</span></code>)</p></td>
+<td><p>00:07.101</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/quickstart/plot_retinotopy_flatmap.html#sphx-glr-auto-examples-quickstart-plot-retinotopy-flatmap-py"><span class="std std-ref">Plot Example Retinotopy Flatmaps</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickstart/plot_retinotopy_flatmap.py</span></code>)</p></td>
+<td><p>00:05.836</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/datasets/plot_volume_to_vertex.html#sphx-glr-auto-examples-datasets-plot-volume-to-vertex-py"><span class="std std-ref">Map from Volume to Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/datasets/plot_volume_to_vertex.py</span></code>)</p></td>
+<td><p>00:05.438</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/datasets/plot_volume.html#sphx-glr-auto-examples-datasets-plot-volume-py"><span class="std std-ref">Plot Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/datasets/plot_volume.py</span></code>)</p></td>
+<td><p>00:04.868</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/datasets/plot_volume2D.html#sphx-glr-auto-examples-datasets-plot-volume2d-py"><span class="std std-ref">Plot 2D Volume Data</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/datasets/plot_volume2D.py</span></code>)</p></td>
+<td><p>00:04.602</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/utils/plot_get_roi_vertices.html#sphx-glr-auto-examples-utils-plot-get-roi-vertices-py"><span class="std std-ref">Get Vertices for an ROI</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/utils/plot_get_roi_vertices.py</span></code>)</p></td>
+<td><p>00:04.012</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_rois.html#sphx-glr-auto-examples-quickflat-plot-rois-py"><span class="std std-ref">Plot ROIs on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_rois.py</span></code>)</p></td>
+<td><p>00:03.855</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_advanced_compositing.html#sphx-glr-auto-examples-quickflat-plot-advanced-compositing-py"><span class="std std-ref">Plot with advanced compositing</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_advanced_compositing.py</span></code>)</p></td>
+<td><p>00:03.674</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/utils/plot_voxel_distance_from_surface.html#sphx-glr-auto-examples-utils-plot-voxel-distance-from-surface-py"><span class="std std-ref">Voxel distance from surface</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/utils/plot_voxel_distance_from_surface.py</span></code>)</p></td>
+<td><p>00:03.643</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_thickness_nanmean.html#sphx-glr-auto-examples-quickflat-plot-thickness-nanmean-py"><span class="std std-ref">Ignore NaN (not-a-number) values in thickness mapping</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_thickness_nanmean.py</span></code>)</p></td>
+<td><p>00:03.378</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_make_png.html#sphx-glr-auto-examples-quickflat-plot-make-png-py"><span class="std std-ref">Save a 2D static flatmap as PNG</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_make_png.py</span></code>)</p></td>
+<td><p>00:03.343</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_make_svg.html#sphx-glr-auto-examples-quickflat-plot-make-svg-py"><span class="std std-ref">Save a 2D static flatmap as SVG</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_make_svg.py</span></code>)</p></td>
+<td><p>00:03.335</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/datasets/plot_vertex.html#sphx-glr-auto-examples-datasets-plot-vertex-py"><span class="std std-ref">Plot Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/datasets/plot_vertex.py</span></code>)</p></td>
+<td><p>00:03.304</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_dropout.html#sphx-glr-auto-examples-quickflat-plot-dropout-py"><span class="std std-ref">Plot dropout regions on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_dropout.py</span></code>)</p></td>
+<td><p>00:02.353</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/quickflat/plot_cutouts.html#sphx-glr-auto-examples-quickflat-plot-cutouts-py"><span class="std std-ref">Plot cutouts on the flatmap</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickflat/plot_cutouts.py</span></code>)</p></td>
+<td><p>00:01.811</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/datasets/plot_vertex2D.html#sphx-glr-auto-examples-datasets-plot-vertex2d-py"><span class="std std-ref">Plot 2D Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/datasets/plot_vertex2D.py</span></code>)</p></td>
+<td><p>00:01.433</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/datasets/plot_vertexRGB.html#sphx-glr-auto-examples-datasets-plot-vertexrgb-py"><span class="std std-ref">Plot RGB Vertex Data</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/datasets/plot_vertexRGB.py</span></code>)</p></td>
+<td><p>00:01.425</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/utils/plot_mosaic.html#sphx-glr-auto-examples-utils-plot-mosaic-py"><span class="std std-ref">Mosaic plot</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/utils/plot_mosaic.py</span></code>)</p></td>
+<td><p>00:00.202</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/fsaverage/upsample_to_fsaverage.html#sphx-glr-auto-examples-fsaverage-upsample-to-fsaverage-py"><span class="std std-ref">Upsample data from a lower resolution fsaverage template to fsaverage for visualization</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/fsaverage/upsample_to_fsaverage.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/import_surface/import_fmriprep.html#sphx-glr-auto-examples-import-surface-import-fmriprep-py"><span class="std std-ref">Import fmriprep output</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/import_surface/import_fmriprep.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/quickstart/retinotopy_webgl.html#sphx-glr-auto-examples-quickstart-retinotopy-webgl-py"><span class="std std-ref">Plot Example Retinotopy in Web Viewer</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickstart/retinotopy_webgl.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/quickstart/show_config.html#sphx-glr-auto-examples-quickstart-show-config-py"><span class="std std-ref">Finding out where the config and filestore are</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/quickstart/show_config.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/utils/mni_to_subject.html#sphx-glr-auto-examples-utils-mni-to-subject-py"><span class="std std-ref">Transform from MNI to Subject Space</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/utils/mni_to_subject.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/utils/multi_panels_plots.html#sphx-glr-auto-examples-utils-multi-panels-plots-py"><span class="std std-ref">Multi-panels figures</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/utils/multi_panels_plots.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/utils/subject_to_mni.html#sphx-glr-auto-examples-utils-subject-to-mni-py"><span class="std std-ref">Transform from Subject to MNI Space</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/utils/subject_to_mni.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/webgl/dynamic_with_custom_template.html#sphx-glr-auto-examples-webgl-dynamic-with-custom-template-py"><span class="std std-ref">Dynamic viewer with html template</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/webgl/dynamic_with_custom_template.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/webgl/multiple_datasets.html#sphx-glr-auto-examples-webgl-multiple-datasets-py"><span class="std std-ref">Create a 3D WebGL Viewer with Multiple Datasets</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/webgl/multiple_datasets.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/webgl/single_dataset.html#sphx-glr-auto-examples-webgl-single-dataset-py"><span class="std std-ref">Create a 3D WebGL Viewer</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/webgl/single_dataset.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="auto_examples/webgl/static.html#sphx-glr-auto-examples-webgl-static-py"><span class="std std-ref">Create a static viewer</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/webgl/static.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="auto_examples/webgl/static_with_custom_template.html#sphx-glr-auto-examples-webgl-static-with-custom-template-py"><span class="std std-ref">Static viewer with html template</span></a> (<code class="docutils literal notranslate"><span class="pre">../examples/webgl/static_with_custom_template.py</span></code>)</p></td>
+<td><p>00:00.000</p></td>
+<td><p>0.0</p></td>
+</tr>
+</tbody>
+</table>
+</div>
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="index.html">pycortex</a></h1>
+
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+<p>
+<iframe src="https://ghbtns.com/github-btn.html?user=gallantlab&repo=pycortex&type=star&count=true&size=large&v=2"
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+<h3>Navigation</h3>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="install.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="segmentation_guide.html">Surface Segmentation and Flattening</a></li>
+<li class="toctree-l1"><a class="reference internal" href="database.html">Surface Database</a></li>
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diff --git a/transforms.html b/transforms.html
index 27c67690e..26d7b009e 100644
--- a/transforms.html
+++ b/transforms.html
@@ -1,22 +1,20 @@
-
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-<html>
+<html lang="en" data-content_root="./">
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
-
-    <title>Transform formats &#8212; pycortex 1.2.4 documentation</title>
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+
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+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
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@@ -24,8 +22,9 @@
    
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+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -38,14 +37,14 @@
           <div class="body" role="main">
             
   <section id="transform-formats">
-<h1>Transform formats<a class="headerlink" href="#transform-formats" title="Permalink to this headline">¶</a></h1>
+<h1>Transform formats<a class="headerlink" href="#transform-formats" title="Link to this heading">¶</a></h1>
 <p>Functional data, usually collected by an epi sequence, typically does not have the same scan parameters as the anatomical MPRAGE scan used to generate the surfaces. Additionally, fMRI sequences which are usually optimized for T2* have drastically different and larger distortions than a typical T1 anatomical sequence. While automatic algorithms exist to align these two scan types, they will sometimes fail spectacularly, especially if a partial volume slice prescription is necessary.</p>
 <p>pycortex includes a tool based on <a class="reference external" href="http://docs.enthought.com/mayavi/mayavi/">mayavi</a> to do manual <strong>affine</strong> alignments. Please see the <a href="#id1"><span class="problematic" id="id2">:module:`align`</span></a> module for more information. Alternatively, if an automatic algorithm works well enough, you can also commit your own transform to the database. Transforms in pycortex always go from <strong>fiducial to functional</strong> space. They have four variables associated:</p>
 <blockquote>
 <div><ul class="simple">
 <li><p><strong>Subject</strong> : name of the subject, must match the surfaces used to create the transform</p></li>
 <li><p><strong>Name</strong> : A unique identifier for this transform</p></li>
-<li><p><strong>type</strong> : The type of transform – from fiducial to functional <strong>magnet</strong> space, or fiducial to <strong>coord</strong> inate space</p></li>
+<li><p><strong>type</strong> : The type of transform – from fiducial to functional <strong>magnet</strong> space, or fiducial to <strong>coord</strong> innate space</p></li>
 <li><p><strong>epifile</strong> : the filename of the functional data that the fiducial is aligned to</p></li>
 </ul>
 </div></blockquote>
@@ -101,7 +100,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="search.html" method="get">
@@ -109,8 +108,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -124,11 +123,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="_sources/transforms.rst.txt"
diff --git a/userguide/webgl.html b/userguide/webgl.html
index 0c355361a..735b0a920 100644
--- a/userguide/webgl.html
+++ b/userguide/webgl.html
@@ -1,29 +1,28 @@
-
 <!DOCTYPE html>
 
-<html>
+<html lang="en" data-content_root="../">
   <head>
     <meta charset="utf-8" />
-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>WebGL Viewer Overview &#8212; pycortex 1.2.4 documentation</title>
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css" />
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/jquery.js"></script>
-    <script src="../_static/underscore.js"></script>
-    <script src="../_static/doctools.js"></script>
+    <title>WebGL Viewer Overview &#8212; pycortex 1.2.8 documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery.css?v=61a4c737" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-dataframe.css?v=2082cf3c" />
+    <link rel="stylesheet" type="text/css" href="../_static/sg_gallery-rendered-html.css?v=1277b6f3" />
+    <script src="../_static/documentation_options.js?v=4d6f9085"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
    
   <link rel="stylesheet" href="../_static/custom.css" type="text/css" />
   
+
+  
   
-  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
 
   </head><body>
   
@@ -36,7 +35,7 @@
           <div class="body" role="main">
             
   <section id="webgl-viewer-overview">
-<h1>WebGL Viewer Overview<a class="headerlink" href="#webgl-viewer-overview" title="Permalink to this headline">¶</a></h1>
+<h1>WebGL Viewer Overview<a class="headerlink" href="#webgl-viewer-overview" title="Link to this heading">¶</a></h1>
 <p>WebGL viewers enable interactive 3D displays of brain data in the web browser using a simple set of commands (see demo examples). The use of a web browser as the front end for pycortex also allows an unprecedented level of interactivity. For example, the anatomical surface can be flattened interactively simply by dragging a slider. This interactive design helps the user to develop a clear sense of the correspondence between flattened and folded surfaces.</p>
 <ul class="simple">
 <li><p>adjust camera angle and zoom in real time</p></li>
@@ -50,16 +49,12 @@ <h1>WebGL Viewer Overview<a class="headerlink" href="#webgl-viewer-overview" tit
 <p>Pycortex can also display temporally varying time-series data on the cortical surface in real time. This allows simultaneous visualization of the experimental paradigm and the functional data in real time</p>
 <p>It is simple to post pycortex visualizations to a web page for public viewing. These static visualizations are generated using a simple command that generates a single web page with most resources embedded directly. The surface structure, data, and the webpage can then be posted to any public facing web site. For example, the online Neurovault data repository (<a class="reference external" href="http://neurovault.org">http://neurovault.org</a>) now makes use of pycortex, and any fMRI data uploaded to Neurovault can be visualized automatically in pycortex. These visualizations are visible at a static web address that can be referenced in papers and shared with anyone with a web browser.</p>
 <section id="using-the-webgl-viewer">
-<h2>Using the WebGL Viewer<a class="headerlink" href="#using-the-webgl-viewer" title="Permalink to this headline">¶</a></h2>
-<p>There are two ways to create a WebGL viewer. A <strong>dynamic viewer</strong> is temporary viewer that is hosted by the pyhton process that generated it. A <strong>static viewer</strong> is a viewer that is saved permanently to disk and will persist beyond the lifetime of the python process. Using a static viewer requires hosting the created directory with a webserver such as nginx.</p>
+<h2>Using the WebGL Viewer<a class="headerlink" href="#using-the-webgl-viewer" title="Link to this heading">¶</a></h2>
+<p>There are two ways to create a WebGL viewer. A <strong>dynamic viewer</strong> is temporary viewer that is hosted by the python process that generated it. A <strong>static viewer</strong> is a viewer that is saved permanently to disk and will persist beyond the lifetime of the python process. Using a static viewer requires hosting the created directory with a webserver such as nginx.</p>
 <section id="keyboard-shortcuts">
-<h3>Keyboard Shortcuts<a class="headerlink" href="#keyboard-shortcuts" title="Permalink to this headline">¶</a></h3>
+<h3>Keyboard Shortcuts<a class="headerlink" href="#keyboard-shortcuts" title="Link to this heading">¶</a></h3>
 <p>There are many keyboard shortcuts that allow for more fluid interaction with the WebGL viewer. A complete list of keyboard shortcuts can also be displayed in the viewer by pressing the <strong>h</strong> key.</p>
 <table class="docutils align-default">
-<colgroup>
-<col style="width: 27%" />
-<col style="width: 73%" />
-</colgroup>
 <thead>
 <tr class="row-odd"><th class="head"><p>Key</p></th>
 <th class="head"><p>Action</p></th>
@@ -139,15 +134,11 @@ <h3>Keyboard Shortcuts<a class="headerlink" href="#keyboard-shortcuts" title="Pe
 </table>
 </section>
 <section id="view-controls">
-<h3>View Controls<a class="headerlink" href="#view-controls" title="Permalink to this headline">¶</a></h3>
+<h3>View Controls<a class="headerlink" href="#view-controls" title="Link to this heading">¶</a></h3>
 <p>The <strong>Open Controls</strong> button in the upper right corner opens a control panel for many different display options.</p>
 <section id="camera-controls">
-<h4>Camera Controls<a class="headerlink" href="#camera-controls" title="Permalink to this headline">¶</a></h4>
+<h4>Camera Controls<a class="headerlink" href="#camera-controls" title="Link to this heading">¶</a></h4>
 <table class="docutils align-default">
-<colgroup>
-<col style="width: 19%" />
-<col style="width: 81%" />
-</colgroup>
 <thead>
 <tr class="row-odd"><th class="head"><p>name</p></th>
 <th class="head"><p>description</p></th>
@@ -176,12 +167,8 @@ <h4>Camera Controls<a class="headerlink" href="#camera-controls" title="Permalin
 </table>
 </section>
 <section id="surface-controls">
-<h4>Surface Controls<a class="headerlink" href="#surface-controls" title="Permalink to this headline">¶</a></h4>
+<h4>Surface Controls<a class="headerlink" href="#surface-controls" title="Link to this heading">¶</a></h4>
 <table class="docutils align-default">
-<colgroup>
-<col style="width: 26%" />
-<col style="width: 74%" />
-</colgroup>
 <thead>
 <tr class="row-odd"><th class="head"><p>name</p></th>
 <th class="head"><p>description</p></th>
@@ -213,12 +200,8 @@ <h4>Surface Controls<a class="headerlink" href="#surface-controls" title="Permal
 </table>
 </section>
 <section id="overlay-controls">
-<h4>Overlay Controls<a class="headerlink" href="#overlay-controls" title="Permalink to this headline">¶</a></h4>
+<h4>Overlay Controls<a class="headerlink" href="#overlay-controls" title="Link to this heading">¶</a></h4>
 <table class="docutils align-default">
-<colgroup>
-<col style="width: 27%" />
-<col style="width: 73%" />
-</colgroup>
 <thead>
 <tr class="row-odd"><th class="head"><p>name</p></th>
 <th class="head"><p>description</p></th>
@@ -237,7 +220,7 @@ <h4>Overlay Controls<a class="headerlink" href="#overlay-controls" title="Permal
 </section>
 </section>
 <section id="webgl-viewer-technical-details">
-<h2>WebGL Viewer Technical Details<a class="headerlink" href="#webgl-viewer-technical-details" title="Permalink to this headline">¶</a></h2>
+<h2>WebGL Viewer Technical Details<a class="headerlink" href="#webgl-viewer-technical-details" title="Link to this heading">¶</a></h2>
 <p>Pycortex uses custom shaders that implement pixel-based mapping. During 3D graphics rendering, the color of each pixel is determined by some predefined code at the fragment shading step. Under a traditional fixed-function pipeline, fragment shading is performed by a rasterizer that implements vertex-based mapping (Woo et al., 1999). In contrast, the fragment shader in pycortex projects each pixel into the functional space in 3D, and then samples the underlying volume data by reading from a texture. Nearest-neighbor or trilinear sampling is automatically performed by OpenGL when the data is read from the texture. This generates a fully interactive and accurate real-time visualization.</p>
 <p>The webgl module contains code that parses and generates the HTML and javascript code required to display surface data in a web browser. It provides two possible use cases: a dynamic view that can be controlled by a back end python web server, and a static view that generates static HTML files for upload into an existing web server. The OpenCTM library (Geelnard, 2009) is used to compress the surface mesh into a form that can be utilized by the web browser. If a dynamic view is requested, the webgl module sets up a local web server with all the required surface and data files accessible to the web browser. If a static view is requested, all HTML and javascript code is embedded into a single HTML document and saved to a set of files. Data (in the form of compressed mosaic images) and surface structures are stored separately. These standalone visualizations can then be copied to a web server to be shared with colleagues, included as links in published articles, or shared online with a broad audience.</p>
 <p>The data display can be modified interactively in numerous ways. The dynamic view has two sliding windows that contain display options. The <strong>unfold</strong> slider in the control panel linearly interpolates the shape of the cortical mesh between the original (folded) anatomical, inflated, and flattened surfaces. This allows the unfolding process to be visualized continuously, and it clarifies the correspondence between 3D anatomical features and the cortical flatmap. The sliding window located at the top contains options that change how the data is displayed. Different colormaps can be selected and the colormap ranges can be altered dynamically. 2D colormaps are also supported, allowing two datasets to be contrasted simultaneously. Multiple datasets can be loaded and compared directly by simply toggling between them. Sliders are provided to change the transparency of the dropout, overlay, data, and curvature layers.</p>
@@ -294,7 +277,7 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<div id="searchbox" style="display: none" role="search">
+<search id="searchbox" style="display: none" role="search">
   <h3 id="searchlabel">Quick search</h3>
     <div class="searchformwrapper">
     <form class="search" action="../search.html" method="get">
@@ -302,8 +285,8 @@ <h3 id="searchlabel">Quick search</h3>
       <input type="submit" value="Go" />
     </form>
     </div>
-</div>
-<script>$('#searchbox').show(0);</script>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -317,11 +300,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2012, James Gao.
+      &#169;2012, James Gao.
       
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.5.0</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="https://www.sphinx-doc.org/">Sphinx 7.3.7</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
       
       |
       <a href="../_sources/userguide/webgl.rst.txt"