From 8e3a5e146a3e7a020a49a0f77c4718cbf364468b Mon Sep 17 00:00:00 2001
From: Bjoern Gruening <bjoern.gruening@gmail.com>
Date: Tue, 23 Apr 2024 15:03:53 +0200
Subject: [PATCH] update testing

---
 .github/workflows/ci.yaml | 5 +++--
 .github/workflows/pr.yaml | 6 ++----
 2 files changed, 5 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index c7903f0c7..819936bd5 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -7,7 +7,7 @@ on:
     types: [run-all-tool-tests-command]
 env:
   GALAXY_FORK: galaxyproject
-  GALAXY_BRANCH: release_23.2
+  GALAXY_BRANCH: release_24.0
   MAX_CHUNKS: 40
 jobs:
   setup:
@@ -103,7 +103,7 @@ jobs:
         mode: lint
         repository-list: ${{ needs.setup.outputs.repository-list }}
         tool-list: ${{ needs.setup.outputs.tool-list }}
-        additional-planemo-options: --biocontainers -s tests,output,inputs,help,general,command,citations,tool_xsd,xml_order,tool_urls,shed_metadata
+        additional-planemo-options: --biocontainers -s stdio,tests,output,inputs,help,general,command,citations,tool_xsd,xml_order,tool_urls,shed_metadata,urls,readme,shed_yaml,repository_dependencies,tool_dependencies_actions,tool_dependencies_sha256sum,tool_dependencies_xsd,expansion
     - uses: actions/upload-artifact@v4
       if: ${{ failure() }}
       with:
@@ -204,6 +204,7 @@ jobs:
       with:
         name: 'All tool test results'
         path: upload
+    - run: cat upload/tool_test_output.md >> $GITHUB_STEP_SUMMARY
     - name: Create URL to the run output
       if: ${{ github.event.client_payload.slash_command.command == 'run-all-tool-tests' }}
       id: vars
diff --git a/.github/workflows/pr.yaml b/.github/workflows/pr.yaml
index 0c496e80e..b9fd105b7 100644
--- a/.github/workflows/pr.yaml
+++ b/.github/workflows/pr.yaml
@@ -2,7 +2,6 @@ name: Galaxy Tool Linting and Tests for push and PR
 on:
   pull_request:
     paths-ignore:
-      - '.github/**'
       - 'deprecated/**'
       - 'docs/**'
       - '*'
@@ -11,13 +10,12 @@ on:
       - main
       - master
     paths-ignore:
-      - '.github/**'
       - 'deprecated/**'
       - 'docs/**'
       - '*'
 env:
   GALAXY_FORK: galaxyproject
-  GALAXY_BRANCH: release_23.2
+  GALAXY_BRANCH: release_24.0
   MAX_CHUNKS: 4
   MAX_FILE_SIZE: 1M
 concurrency:
@@ -401,7 +399,7 @@ jobs:
   deploy-report:
     name: Report deploy status
     needs: [deploy]
-    if: ${{ always() && needs.deploy.result != 'success' && (github.ref == 'refs/heads/master' || github.ref == 'refs/heads/main' ) && github.repository_owner == 'galaxyproject' }}
+    if: ${{ always() && needs.deploy.result != 'success' && (github.ref == 'refs/heads/master' || github.ref == 'refs/heads/main' ) && github.repository_owner == 'galaxyproteomics' }}
     runs-on: ubuntu-latest
     steps:
     # report to the PR if deployment failed