From 1c7d2a668ea48816acb04442b79c625069887400 Mon Sep 17 00:00:00 2001
From: Reid Wagner <wagnerr@umn.edu>
Date: Fri, 14 Jun 2024 09:27:03 -0500
Subject: [PATCH] Add /usr/local/lib to LD_LIBRARY_PATH for biocontainer
 environments.

---
 tools/fragpipe/fragpipe.xml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tools/fragpipe/fragpipe.xml b/tools/fragpipe/fragpipe.xml
index 7157261ee..c5da6433c 100644
--- a/tools/fragpipe/fragpipe.xml
+++ b/tools/fragpipe/fragpipe.xml
@@ -27,6 +27,7 @@
         export XDG_CONFIG_HOME=\$(pwd)/.config &&
         export XDG_CACHE_HOME=\$(pwd)/.cache &&
         export JAVA_OPTS="\$JAVA_OPTS -Xmx\$[ \${GALAXY_MEMORY_MB:-8192} / 1024 ]g -Djava.io.tmpdir=\$(pwd)/tmp" &&
+        export LD_LIBRARY_PATH="\$LD_LIBRARY_PATH:/usr/local/lib" &&
         mkdir -p outputs &&
         @CMD_IMPORTS@
         @LINK_FRAGGER_DATABASE@