{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":126519438,"defaultBranch":"master","name":"OUTRIDER","ownerLogin":"gagneurlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-03-23T17:42:32.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/29893284?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1722425740.0","currentOid":""},"activityList":{"items":[{"before":"0e0461919e857d70a36df3c60ef0d9d5f390a006","after":"26e149a10b82597bec85e79dc2ac206ddbb99e2a","ref":"refs/heads/OHT_clean","pushedAt":"2024-07-31T12:24:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vyepez88","name":"Vicente Yepez","path":"/vyepez88","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30469316?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"52581f5de6afe6c26fae4b9b597c8341b658829e","after":"0e0461919e857d70a36df3c60ef0d9d5f390a006","ref":"refs/heads/OHT_clean","pushedAt":"2024-07-31T12:24:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vyepez88","name":"Vicente Yepez","path":"/vyepez88","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30469316?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"dc995884b0fb75f9947ae8cda8c6e81285152d72","after":null,"ref":"refs/heads/OHT","pushedAt":"2024-07-31T11:35:40.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"}},{"before":"dc995884b0fb75f9947ae8cda8c6e81285152d72","after":"52581f5de6afe6c26fae4b9b597c8341b658829e","ref":"refs/heads/OHT_clean","pushedAt":"2024-07-31T10:46:26.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Optimal Hard Thresholding to determine optimal encoding dimension (#69)\n\n* changed estimateBestQ to use OHT\r\n\r\n* edit estimateBestQ error messages and variable names\r\n\r\n* add unit tests for OHT\r\n\r\n* update OHT tests\r\n\r\n* add denoiseR package to Suggests\r\n\r\n* add xcolor package for vignette building\r\n\r\n* added my name\r\n\r\n* update vignette\r\n\r\n* add if statement to transpose zScores if aspect ratio larger than 1\r\n\r\n* replace small latent space error by warning\r\n\r\n* fix estimateBestQ test error\r\n\r\n* Use GHA checkout V4 & R 4.4 for mac and windows\r\n\r\n---------\r\n\r\nCo-authored-by: AtaJadidAhari ","shortMessageHtmlLink":"Optimal Hard Thresholding to determine optimal encoding dimension (#69)"}},{"before":null,"after":"dc995884b0fb75f9947ae8cda8c6e81285152d72","ref":"refs/heads/OHT_clean","pushedAt":"2024-07-31T09:45:51.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"Version Bump for Bioconductor 3.18 (#65)\n\n* bump x.y.z version to even y prior to creation of RELEASE_3_17 branch\r\n\r\n* bump x.y.z version to odd y following creation of RELEASE_3_17 branch\r\n\r\n* bump x.y.z version to even y prior to creation of RELEASE_3_18 branch\r\n\r\n* Bump version and NEWS file\r\n\r\n---------\r\n\r\nCo-authored-by: J Wokaty \r\nCo-authored-by: J Wokaty ","shortMessageHtmlLink":"Version Bump for Bioconductor 3.18 (#65)"}},{"before":"4220447aca3d3cd5e206d701a07321a8ed39d3f0","after":"a68241c7b46df9b52f855fc49ed7a244ee21eee9","ref":"refs/heads/gha","pushedAt":"2024-07-30T11:53:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"roll back to master","shortMessageHtmlLink":"roll back to master"}},{"before":"f41aa458cdc5acf4f67364c04eabd927b4abc75c","after":"4220447aca3d3cd5e206d701a07321a8ed39d3f0","ref":"refs/heads/gha","pushedAt":"2024-07-30T11:26:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"update R version to 4.4","shortMessageHtmlLink":"update R version to 4.4"}},{"before":"44f1cf4e95ae1a3bb98bc5c9442d8aba1d399a6b","after":"f41aa458cdc5acf4f67364c04eabd927b4abc75c","ref":"refs/heads/gha","pushedAt":"2024-07-30T09:18:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"pandoc version","shortMessageHtmlLink":"pandoc version"}},{"before":"fc7e543d5db27a9a174845ef3a0e90b17ca15e76","after":"44f1cf4e95ae1a3bb98bc5c9442d8aba1d399a6b","ref":"refs/heads/gha","pushedAt":"2024-07-30T09:13:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"fall back to knitr instead of rmarkdown, echo pandoc version","shortMessageHtmlLink":"fall back to knitr instead of rmarkdown, echo pandoc version"}},{"before":"460c7f10539cd97c5f9498255de16aea2daf0aa3","after":"fc7e543d5db27a9a174845ef3a0e90b17ca15e76","ref":"refs/heads/gha","pushedAt":"2024-07-26T15:20:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"rmarkdown instead of knitr","shortMessageHtmlLink":"rmarkdown instead of knitr"}},{"before":"e0483b367481ef01bbe2eef1aeec68c8763b69fd","after":"460c7f10539cd97c5f9498255de16aea2daf0aa3","ref":"refs/heads/gha","pushedAt":"2024-07-26T14:50:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Change tinytex installation order","shortMessageHtmlLink":"Change tinytex installation order"}},{"before":"fa4b90998b44e71e104f57e9a9547b06485b79a4","after":"e0483b367481ef01bbe2eef1aeec68c8763b69fd","ref":"refs/heads/gha","pushedAt":"2024-07-26T14:34:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Force install tinytex","shortMessageHtmlLink":"Force install tinytex"}},{"before":"8a091758e32d511fb277b0eaef488ff1939560f6","after":"fa4b90998b44e71e104f57e9a9547b06485b79a4","ref":"refs/heads/gha","pushedAt":"2024-07-26T14:32:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"install tinytex 2021.03","shortMessageHtmlLink":"install tinytex 2021.03"}},{"before":"496d71d9dbe4d0125dd28b299ae9afcdc0d7be6d","after":"8a091758e32d511fb277b0eaef488ff1939560f6","ref":"refs/heads/gha","pushedAt":"2024-07-26T13:56:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Install Caskroom/cask/mactex for mac","shortMessageHtmlLink":"Install Caskroom/cask/mactex for mac"}},{"before":"96954d5162eedf06f0d5b5c15103d6b95f24453e","after":"496d71d9dbe4d0125dd28b299ae9afcdc0d7be6d","ref":"refs/heads/gha","pushedAt":"2024-07-26T13:54:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Update OUTRIDER.Rnw","shortMessageHtmlLink":"Update OUTRIDER.Rnw"}},{"before":"c1de15b3f56da77dc0be28076994e92b789cf8ae","after":"96954d5162eedf06f0d5b5c15103d6b95f24453e","ref":"refs/heads/gha","pushedAt":"2024-07-26T13:42:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"remove hlkwd","shortMessageHtmlLink":"remove hlkwd"}},{"before":"106b44fc7e9fcb225b6eaff410667c05ce34fc74","after":"c1de15b3f56da77dc0be28076994e92b789cf8ae","ref":"refs/heads/gha","pushedAt":"2024-07-26T13:27:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"remove Sweave, add \\hlkwd and \\hldef","shortMessageHtmlLink":"remove Sweave, add \\hlkwd and \\hldef"}},{"before":"544fab9c701ed32ccd6f4dedb0188505f4c12c05","after":"106b44fc7e9fcb225b6eaff410667c05ce34fc74","ref":"refs/heads/gha","pushedAt":"2024-07-26T13:09:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"add Sweave to vignette","shortMessageHtmlLink":"add Sweave to vignette"}},{"before":"ce4bee044db232f5507c52042271575fe855dfbb","after":"544fab9c701ed32ccd6f4dedb0188505f4c12c05","ref":"refs/heads/gha","pushedAt":"2024-07-26T12:50:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"reinstall magick in R","shortMessageHtmlLink":"reinstall magick in R"}},{"before":"a65cc2e2002317c63f1d26f7eb9129051c2d1e21","after":"ce4bee044db232f5507c52042271575fe855dfbb","ref":"refs/heads/gha","pushedAt":"2024-07-26T12:18:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"Don't upgrade packages in the second pass","shortMessageHtmlLink":"Don't upgrade packages in the second pass"}},{"before":null,"after":"a65cc2e2002317c63f1d26f7eb9129051c2d1e21","ref":"refs/heads/gha","pushedAt":"2024-07-26T12:05:44.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"install knitr version 1.45.0 in gha","shortMessageHtmlLink":"install knitr version 1.45.0 in gha"}},{"before":"7ebc90a928ddc134c7719ea2b64b96cefdd0c596","after":null,"ref":"refs/heads/fix_gha_cache","pushedAt":"2024-07-26T11:46:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"}},{"before":null,"after":"dc995884b0fb75f9947ae8cda8c6e81285152d72","ref":"refs/heads/OHT","pushedAt":"2024-06-24T10:55:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrearaithel","name":"Andrea Raithel","path":"/andrearaithel","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/133764907?s=80&v=4"},"commit":{"message":"Version Bump for Bioconductor 3.18 (#65)\n\n* bump x.y.z version to even y prior to creation of RELEASE_3_17 branch\r\n\r\n* bump x.y.z version to odd y following creation of RELEASE_3_17 branch\r\n\r\n* bump x.y.z version to even y prior to creation of RELEASE_3_18 branch\r\n\r\n* Bump version and NEWS file\r\n\r\n---------\r\n\r\nCo-authored-by: J Wokaty \r\nCo-authored-by: J Wokaty ","shortMessageHtmlLink":"Version Bump for Bioconductor 3.18 (#65)"}},{"before":"e8d8a62c170bf55b5d24207a791ce9c9b1c578a7","after":"edd760b0656f6ac1828bd383f6c1ac2ec545ad5a","ref":"refs/heads/bioc_devel","pushedAt":"2024-04-26T21:52:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"c-mertes","name":"Christian Mertes","path":"/c-mertes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22544249?s=80&v=4"},"commit":{"message":"update version to new BioC RELEASE_3_20","shortMessageHtmlLink":"update version to new BioC RELEASE_3_20"}},{"before":"88413c206de02a7896c39b3403276b59dfbb97bb","after":"e8d8a62c170bf55b5d24207a791ce9c9b1c578a7","ref":"refs/heads/bioc_devel","pushedAt":"2024-04-26T20:19:55.000Z","pushType":"push","commitsCount":23,"pusher":{"login":"c-mertes","name":"Christian Mertes","path":"/c-mertes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22544249?s=80&v=4"},"commit":{"message":"Preparing new BioC RELEASE_3_20\n\nThis is a merge of branch 'master' into 'bioc_devel'","shortMessageHtmlLink":"Preparing new BioC RELEASE_3_20"}},{"before":"63ae890631e8bbe96bd5d0c4fbf6242b012ccc39","after":"dc995884b0fb75f9947ae8cda8c6e81285152d72","ref":"refs/heads/master","pushedAt":"2024-04-25T12:08:59.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ischeller","name":"Ines Scheller","path":"/ischeller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56256384?s=80&v=4"},"commit":{"message":"Version Bump for Bioconductor 3.18 (#65)\n\n* bump x.y.z version to even y prior to creation of RELEASE_3_17 branch\r\n\r\n* bump x.y.z version to odd y following creation of RELEASE_3_17 branch\r\n\r\n* bump x.y.z version to even y prior to creation of RELEASE_3_18 branch\r\n\r\n* Bump version and NEWS file\r\n\r\n---------\r\n\r\nCo-authored-by: J Wokaty \r\nCo-authored-by: J Wokaty ","shortMessageHtmlLink":"Version Bump for Bioconductor 3.18 (#65)"}},{"before":"b17d86d1d9acbef7d64b2be44046c8d5a10f5b63","after":"63ae890631e8bbe96bd5d0c4fbf6242b012ccc39","ref":"refs/heads/master","pushedAt":"2024-04-25T12:08:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ischeller","name":"Ines Scheller","path":"/ischeller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56256384?s=80&v=4"},"commit":{"message":"fix gha cache address (#66)","shortMessageHtmlLink":"fix gha cache address (#66)"}},{"before":null,"after":"7ebc90a928ddc134c7719ea2b64b96cefdd0c596","ref":"refs/heads/fix_gha_cache","pushedAt":"2024-04-24T14:56:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"AtaJadidAhari","name":null,"path":"/AtaJadidAhari","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24277411?s=80&v=4"},"commit":{"message":"fix gha cache address","shortMessageHtmlLink":"fix gha cache address"}},{"before":"d00fec0191c0111a7dddb3823031972af6ec68f5","after":"9c8a1464c5512452058801f16addb519427cdd92","ref":"refs/heads/RELEASE_3_18","pushedAt":"2024-04-24T08:04:02.000Z","pushType":"push","commitsCount":21,"pusher":{"login":"c-mertes","name":"Christian Mertes","path":"/c-mertes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22544249?s=80&v=4"},"commit":{"message":"Merge branch 'master' into RELEASE_3_18","shortMessageHtmlLink":"Merge branch 'master' into RELEASE_3_18"}},{"before":"0528b44b783794d4855757b849ac344f82212899","after":"d00fec0191c0111a7dddb3823031972af6ec68f5","ref":"refs/heads/RELEASE_3_18","pushedAt":"2024-04-24T08:02:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"c-mertes","name":"Christian Mertes","path":"/c-mertes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22544249?s=80&v=4"},"commit":{"message":"Bump version and NEWS file","shortMessageHtmlLink":"Bump version and NEWS file"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEjgeIHAA","startCursor":null,"endCursor":null}},"title":"Activity ยท gagneurlab/OUTRIDER"}