diff --git a/CHANGELOG.md b/CHANGELOG.md index f7d96553..fffdfb21 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,10 @@ # Changelog The semantic versioning is kind of random. +## 4.3.6 +### BugFix +- The previous version didn't match the number of expanded clones from the SDE mode. So, we remove factor 2 and restore solution from `v4.3.4`, even though we initiate fit variants at size 2 instead of 1 (but has small prob. of p squared). + ## 4.3.5 - reintroduce the factor 2 for the fit variants to avoid "initiating fit variants at size 2, instead of 1" diff --git a/Cargo.lock b/Cargo.lock index 7e7aa9a4..a197c97b 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -311,7 +311,7 @@ checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" [[package]] name = "hsc" -version = "4.3.5" +version = "4.3.6" dependencies = [ "anyhow", "chrono", diff --git a/Cargo.toml b/Cargo.toml index cd352083..3ee8de57 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "hsc" -version = "4.3.5" +version = "4.3.6" edition = "2021" [dependencies] diff --git a/docs/hsc/all.html b/docs/hsc/all.html index 2376012a..544bfc3e 100644 --- a/docs/hsc/all.html +++ b/docs/hsc/all.html @@ -1 +1 @@ -List of all items in this crate

List of all items

Structs

Enums

Functions

Type Aliases

Constants

\ No newline at end of file +List of all items in this crate

List of all items

Structs

Enums

Functions

Type Aliases

Constants

\ No newline at end of file diff --git a/docs/hsc/constant.MAX_SUBCLONES.html b/docs/hsc/constant.MAX_SUBCLONES.html index 2c222c8b..81304f8b 100644 --- a/docs/hsc/constant.MAX_SUBCLONES.html +++ b/docs/hsc/constant.MAX_SUBCLONES.html @@ -1,4 +1,4 @@ -MAX_SUBCLONES in hsc - Rust

Constant hsc::MAX_SUBCLONES

source · 
pub const MAX_SUBCLONES: usize = 1200;
Expand description

Maximal number of fit clones that can arise during the simulation.

+MAX_SUBCLONES in hsc - Rust

Constant hsc::MAX_SUBCLONES

source · 
pub const MAX_SUBCLONES: usize = 1200;
Expand description

Maximal number of fit clones that can arise during the simulation.

If the parameters of the simulation provided by the user (e.g. fit mutation rate) are too extreme, the program will exit with error. To avoid this, increase here the number of clones.

diff --git a/docs/hsc/constant.TIME_AT_BIRTH.html b/docs/hsc/constant.TIME_AT_BIRTH.html index 4da52ba0..69fad387 100644 --- a/docs/hsc/constant.TIME_AT_BIRTH.html +++ b/docs/hsc/constant.TIME_AT_BIRTH.html @@ -1,3 +1,3 @@ -TIME_AT_BIRTH in hsc - Rust

Constant hsc::TIME_AT_BIRTH

source · 
pub const TIME_AT_BIRTH: f32 = _; // 0.75f32
Expand description

The time at birth measured in years used for background mutations in the +TIME_AT_BIRTH in hsc - Rust

Constant hsc::TIME_AT_BIRTH

source · 
pub const TIME_AT_BIRTH: f32 = _; // 0.75f32
Expand description

The time at birth measured in years used for background mutations in the exponential growing phase.

\ No newline at end of file diff --git a/docs/hsc/enum.Probs.html b/docs/hsc/enum.Probs.html index 659205bf..809d4a3d 100644 --- a/docs/hsc/enum.Probs.html +++ b/docs/hsc/enum.Probs.html @@ -1,4 +1,4 @@ -Probs in hsc - Rust

Enum hsc::Probs

source · 
pub enum Probs {
+Probs in hsc - Rust
Enum hsc::Probs
source · 
pub enum Probs {
     Asymmetric {
         u: f32,
         probs_per_year: ProbsPerYear,
diff --git a/docs/hsc/fn.write2file.html b/docs/hsc/fn.write2file.html
index a71f3658..6f532ed5 100644
--- a/docs/hsc/fn.write2file.html
+++ b/docs/hsc/fn.write2file.html
@@ -1,4 +1,4 @@
-write2file in hsc - Rust
Function hsc::write2file
source · 
pub fn write2file<T: Display>(
+write2file in hsc - Rust
Function hsc::write2file
source · 
pub fn write2file<T: Display>(
     data: &[T],
     path: &Path,
     header: Option<&str>,
diff --git a/docs/hsc/genotype/index.html b/docs/hsc/genotype/index.html
index bf91ce5a..d8e88254 100644
--- a/docs/hsc/genotype/index.html
+++ b/docs/hsc/genotype/index.html
@@ -1,4 +1,4 @@
-hsc::genotype - Rust
Module hsc::genotype
source · 
Expand description
The neutral mutations representing the genotype of the stem cells.

+hsc::genotype - Rust
Module hsc::genotype
source · 
Expand description
The neutral mutations representing the genotype of the stem cells.

 
Structs