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DESCRIPTION
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DESCRIPTION
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Package: SCAVENGE
Title: Identifying genetic trait/phenotype relevant cell type/state at single cell resolution
Version: 1.0.1
Date: 2020-01-01
Authors@R:
person(given = "Fulong",
family = "Yu",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-6100-8300"))
Maintainer: Fulong Yu <[email protected]>
Description: SCAVENGE (Single Cell Analysis of Variant Enrichment through Network propagation of GEnomic data) optimizes the inference of functional and genetic associations to specific cells at single-cell resolution.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Depends:
R (>= 3.5.0)
Imports:
RANN,
dplyr,
igraph,
parallel,
Matrix,
irlba
Suggests:
stringr,
BSgenome.Hsapiens.UCSC.hg19,
ggplot2,
data.table,
knitr,
rmarkdown,
methods,
BiocParallel,
chromVAR,
gchromVAR,
SummarizedExperiment,
GenomicRanges,
S4Vectors,
BuenColors,
rmarkdown
biocViews: Variant, Function, CellBasedAssays, Network,
Trajectory, CellType, Epigenetics, ATACSeq, SingleCell
VignetteBuilder: knitr