Error - The 'panel' distribution was not found and is required by epigrass

[rrrrrrmb]

We have a bug report for epigrass in Debian.

Here are the set of commands used to run the test :

# Run simulations with demo models
epirunner script.epg
epirunner rio.epg
epirunner flu.epg
epirunner sars.epg
epirunner star.epg
epirunner script.epg
epirunner mesh.epg

Running the tests against these commands gives the following error in debian:

Traceback (most recent call last):
  File "/usr/bin/epirunner", line 33, in <module>
    sys.exit(load_entry_point('epigrass==3.0.3', 'console_scripts',
'epirunner')())
  File "/usr/bin/epirunner", line 25, in importlib_load_entry_point
    return next(matches).load()
  File "/usr/lib/python3.9/importlib/metadata.py", line 77, in load
    module = import_module(match.group('module'))
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in
import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 850, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in
_call_with_frames_removed
  File "/usr/lib/python3/dist-packages/Epigrass/manager.py", line 20, in
<module>
    from Epigrass.simobj import graph, edge, siteobj
  File "/usr/lib/python3/dist-packages/Epigrass/simobj.py", line 19, in
<module>
    from Epigrass import models
  File "/usr/lib/python3/dist-packages/Epigrass/models.py", line 14, in
<module>
    from epimodels.continuous.models import SIR, SEIR
  File "/usr/lib/python3/dist-packages/epimodels/continuous/models.py",
line 12, in <module>
    import numba
  File "/usr/lib/python3/dist-packages/numba/__init__.py", line 19, in
<module>
    from numba.core import config
  File "/usr/lib/python3/dist-packages/numba/core/config.py", line 16,
in <module>
    import llvmlite.binding as ll
  File "/usr/lib/python3/dist-packages/llvmlite/binding/__init__.py",
line 4, in <module>
    from .dylib import *
  File "/usr/lib/python3/dist-packages/llvmlite/binding/dylib.py", line
3, in <module>
    from llvmlite.binding import ffi
  File "/usr/lib/python3/dist-packages/llvmlite/binding/ffi.py", line
137, in <module>
    from pkg_resources import resource_filename
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line
3243, in <module>
    def _initialize_master_working_set():
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line
3226, in _call_aside
    f(*args, **kwargs)
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line
3255, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line
568, in _build_master
    ws.require(__requires__)
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line
886, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line
772, in resolve
    raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'panel' distribution was not
found and is required by epigrass

Can you take a look give a pointer as to what is causing this ?

Thanks

[fccoelho]

It is probably missing the panel python library. pip install panel should solve it.

…

On Thu, Aug 4, 2022 at 12:21 PM Mohd Bilal ***@***.***> wrote: We have a bug report for epigrass <https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=998265> in Debian. Here are the set of commands used to run the test : # Run simulations with demo models epirunner script.epg epirunner rio.epg epirunner flu.epg epirunner sars.epg epirunner star.epg epirunner script.epg epirunner mesh.epg Running the tests against these commands gives the following error in debian: Traceback (most recent call last): File "/usr/bin/epirunner", line 33, in <module> sys.exit(load_entry_point('epigrass==3.0.3', 'console_scripts', 'epirunner')()) File "/usr/bin/epirunner", line 25, in importlib_load_entry_point return next(matches).load() File "/usr/lib/python3.9/importlib/metadata.py", line 77, in load module = import_module(match.group('module')) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "<frozen importlib._bootstrap>", line 1030, in _gcd_import File "<frozen importlib._bootstrap>", line 1007, in _find_and_load File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked File "<frozen importlib._bootstrap>", line 680, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 850, in exec_module File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed File "/usr/lib/python3/dist-packages/Epigrass/manager.py", line 20, in <module> from Epigrass.simobj import graph, edge, siteobj File "/usr/lib/python3/dist-packages/Epigrass/simobj.py", line 19, in <module> from Epigrass import models File "/usr/lib/python3/dist-packages/Epigrass/models.py", line 14, in <module> from epimodels.continuous.models import SIR, SEIR File "/usr/lib/python3/dist-packages/epimodels/continuous/models.py", line 12, in <module> import numba File "/usr/lib/python3/dist-packages/numba/__init__.py", line 19, in <module> from numba.core import config File "/usr/lib/python3/dist-packages/numba/core/config.py", line 16, in <module> import llvmlite.binding as ll File "/usr/lib/python3/dist-packages/llvmlite/binding/__init__.py", line 4, in <module> from .dylib import * File "/usr/lib/python3/dist-packages/llvmlite/binding/dylib.py", line 3, in <module> from llvmlite.binding import ffi File "/usr/lib/python3/dist-packages/llvmlite/binding/ffi.py", line 137, in <module> from pkg_resources import resource_filename File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3243, in <module> def _initialize_master_working_set(): File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3226, in _call_aside f(*args, **kwargs) File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3255, in _initialize_master_working_set working_set = WorkingSet._build_master() File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 568, in _build_master ws.require(__requires__) File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 886, in require needed = self.resolve(parse_requirements(requirements)) File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 772, in resolve raise DistributionNotFound(req, requirers) pkg_resources.DistributionNotFound: The 'panel' distribution was not found and is required by epigrass Can you take a look give a pointer as to what is causing this ? Thanks — Reply to this email directly, view it on GitHub <#9>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABCGWY54ZUSXJ3G5LSAVY3VXPNXXANCNFSM55S6SNMA> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>