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setup.sh
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setup.sh
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mcmd import -p sys_md_Package.tsv
mcmd import -p Study_InclusionCriteria_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_GenderIdentity_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_GenderAtBirth_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_GenotypicSex_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_CountryOfResidence_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_Ancestry_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_CountryOfBirth_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_InclusionStatus_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_PrimaryAffiliatedInstitute_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_ResourcesInOtherInstitutes_attributes.tsv --as attributes --in fair-genomes
mcmd import -p LeafletAndConsentForm_ConsentFormCreator_attributes.tsv --as attributes --in fair-genomes
mcmd import -p IndividualConsent_CollectedBy_attributes.tsv --as attributes --in fair-genomes
mcmd import -p IndividualConsent_RepresentedBy_attributes.tsv --as attributes --in fair-genomes
mcmd import -p IndividualConsent_DataUsePermissions_attributes.tsv --as attributes --in fair-genomes
mcmd import -p IndividualConsent_DataUseModifiers_attributes.tsv --as attributes --in fair-genomes
mcmd import -p IndividualConsent_AllowRecontacting_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_Phenotype_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_UnobservedPhenotype_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_PhenotypicDataAvailable_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_ClinicalDiagnosis_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_MolecularDiagnosisGene_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_Medication_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_FamilyMembersAffected_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_FamilyMembersSequenced_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_MedicalHistory_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Material_BiospecimenType_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Material_AnatomicalSource_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Material_PathologicalState_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Material_StorageConditions_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Material_AnalysesPerformed_attributes.tsv --as attributes --in fair-genomes
mcmd import -p SamplePreparation_LibraryPreparationKit_attributes.tsv --as attributes --in fair-genomes
mcmd import -p SamplePreparation_TargetEnrichmentKit_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Sequencing_SequencingPlatform_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Sequencing_SequencingInstrumentModel_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Sequencing_SequencingMethod_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Analysis_DataFormatsStored_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Analysis_ReferenceGenomeUsed_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Study_InclusionCriteria.tsv --as fair-genomes_Study_InclusionCriteria --in fair-genomes
mcmd import -p Personal_GenderIdentity.tsv --as fair-genomes_Personal_GenderIdentity --in fair-genomes
mcmd import -p Personal_GenderAtBirth.tsv --as fair-genomes_Personal_GenderAtBirth --in fair-genomes
mcmd import -p Personal_GenotypicSex.tsv --as fair-genomes_Personal_GenotypicSex --in fair-genomes
mcmd import -p Personal_CountryOfResidence.tsv --as fair-genomes_Personal_CountryOfResidence --in fair-genomes
mcmd import -p Personal_Ancestry.tsv --as fair-genomes_Personal_Ancestry --in fair-genomes
mcmd import -p Personal_CountryOfBirth.tsv --as fair-genomes_Personal_CountryOfBirth --in fair-genomes
mcmd import -p Personal_InclusionStatus.tsv --as fair-genomes_Personal_InclusionStatus --in fair-genomes
mcmd import -p Personal_PrimaryAffiliatedInstitute.tsv --as fair-genomes_Personal_PrimaryAffiliatedInstitute --in fair-genomes
mcmd import -p Personal_ResourcesInOtherInstitutes.tsv --as fair-genomes_Personal_ResourcesInOtherInstitutes --in fair-genomes
mcmd import -p LeafletAndConsentForm_ConsentFormCreator.tsv --as fair-genomes_LeafletAndConsentForm_ConsentFormCreator --in fair-genomes
mcmd import -p IndividualConsent_CollectedBy.tsv --as fair-genomes_IndividualConsent_CollectedBy --in fair-genomes
mcmd import -p IndividualConsent_RepresentedBy.tsv --as fair-genomes_IndividualConsent_RepresentedBy --in fair-genomes
mcmd import -p IndividualConsent_DataUsePermissions.tsv --as fair-genomes_IndividualConsent_DataUsePermissions --in fair-genomes
mcmd import -p IndividualConsent_DataUseModifiers.tsv --as fair-genomes_IndividualConsent_DataUseModifiers --in fair-genomes
mcmd import -p IndividualConsent_AllowRecontacting.tsv --as fair-genomes_IndividualConsent_AllowRecontacting --in fair-genomes
mcmd import -p Clinical_Phenotype.tsv --as fair-genomes_Clinical_Phenotype --in fair-genomes
mcmd import -p Clinical_UnobservedPhenotype.tsv --as fair-genomes_Clinical_UnobservedPhenotype --in fair-genomes
mcmd import -p Clinical_PhenotypicDataAvailable.tsv --as fair-genomes_Clinical_PhenotypicDataAvailable --in fair-genomes
mcmd import -p Clinical_ClinicalDiagnosis.tsv --as fair-genomes_Clinical_ClinicalDiagnosis --in fair-genomes
mcmd import -p Clinical_MolecularDiagnosisGene.tsv --as fair-genomes_Clinical_MolecularDiagnosisGene --in fair-genomes
mcmd import -p Clinical_Medication.tsv --as fair-genomes_Clinical_Medication --in fair-genomes
mcmd import -p Clinical_FamilyMembersAffected.tsv --as fair-genomes_Clinical_FamilyMembersAffected --in fair-genomes
mcmd import -p Clinical_FamilyMembersSequenced.tsv --as fair-genomes_Clinical_FamilyMembersSequenced --in fair-genomes
mcmd import -p Clinical_MedicalHistory.tsv --as fair-genomes_Clinical_MedicalHistory --in fair-genomes
mcmd import -p Material_BiospecimenType.tsv --as fair-genomes_Material_BiospecimenType --in fair-genomes
mcmd import -p Material_AnatomicalSource.tsv --as fair-genomes_Material_AnatomicalSource --in fair-genomes
mcmd import -p Material_PathologicalState.tsv --as fair-genomes_Material_PathologicalState --in fair-genomes
mcmd import -p Material_StorageConditions.tsv --as fair-genomes_Material_StorageConditions --in fair-genomes
mcmd import -p Material_AnalysesPerformed.tsv --as fair-genomes_Material_AnalysesPerformed --in fair-genomes
mcmd import -p SamplePreparation_LibraryPreparationKit.tsv --as fair-genomes_SamplePreparation_LibraryPreparationKit --in fair-genomes
mcmd import -p SamplePreparation_TargetEnrichmentKit.tsv --as fair-genomes_SamplePreparation_TargetEnrichmentKit --in fair-genomes
mcmd import -p Sequencing_SequencingPlatform.tsv --as fair-genomes_Sequencing_SequencingPlatform --in fair-genomes
mcmd import -p Sequencing_SequencingInstrumentModel.tsv --as fair-genomes_Sequencing_SequencingInstrumentModel --in fair-genomes
mcmd import -p Sequencing_SequencingMethod.tsv --as fair-genomes_Sequencing_SequencingMethod --in fair-genomes
mcmd import -p Analysis_DataFormatsStored.tsv --as fair-genomes_Analysis_DataFormatsStored --in fair-genomes
mcmd import -p Analysis_ReferenceGenomeUsed.tsv --as fair-genomes_Analysis_ReferenceGenomeUsed --in fair-genomes
mcmd import -p Study_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Personal_attributes.tsv --as attributes --in fair-genomes
mcmd import -p LeafletAndConsentForm_attributes.tsv --as attributes --in fair-genomes
mcmd import -p IndividualConsent_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Clinical_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Material_attributes.tsv --as attributes --in fair-genomes
mcmd import -p SamplePreparation_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Sequencing_attributes.tsv --as attributes --in fair-genomes
mcmd import -p Analysis_attributes.tsv --as attributes --in fair-genomes
mcmd import -p ../../misc/molgenis/other/sys_StaticContent.tsv -a add_update_existing
mcmd add logo -p ../../misc/molgenis/img/analysis.png
mcmd add logo -p ../../misc/molgenis/img/lookups.png
mcmd add logo -p ../../misc/molgenis/img/clinical.png
mcmd add logo -p ../../misc/molgenis/img/leafletandconsentform.png
mcmd add logo -p ../../misc/molgenis/img/individualconsent.png
mcmd add logo -p ../../misc/molgenis/img/contribute.png
mcmd add logo -p ../../misc/molgenis/img/info.png
mcmd add logo -p ../../misc/molgenis/img/material.png
mcmd add logo -p ../../misc/molgenis/img/personal.png
mcmd add logo -p ../../misc/molgenis/img/samplepreparation.png
mcmd add logo -p ../../misc/molgenis/img/sequencing.png
mcmd add logo -p ../../misc/molgenis/img/study.png
mcmd add logo -p ../../misc/molgenis/img/fair_genomes_logo_notext.png
mcmd add logo -p ../../misc/molgenis/img/fair_genomes_logo_long.png
mcmd add logo -p ../../misc/molgenis/img/fair_genomes_logo_white.png
mcmd make --role ANONYMOUS fair-genomes_EDITOR
mcmd give anonymous view sys_md