[Pytest Failure]- Import error failed to import .pyb, .pyc,.pyx file

[swagaths1]

Not able to run any pytest facing the following error
E ModuleNotFoundError: No module named 'spacy.pipeline.pipe'
Basically its not able to find and .pyx, .pyb, .pxd files.

pytest -v test_architectures.py
ImportError while loading conftest '/Users/swagath/Documents/GitHub/spaCy/spacy/tests/conftest.py'.
../init.py:14: in
from . import pipeline # noqa: F401
../pipeline/init.py:1: in
from .attributeruler import AttributeRuler
../pipeline/attributeruler.py:6: in
from .pipe import Pipe
E ModuleNotFoundError: No module named 'spacy.pipeline.pipe'

Steps to Reproduce:

step1: go to test case folder of spacy
cd spaCy/spacy/tests
step2: run any pytest
eg:
pytest -v test_architectures.py

• Operating System: linux
• Flatform : x86
• Python Version Used: any
• spaCy Version Used: 2.3.5 and lower versions as well

[rmitsch]

Hi @swagaths1, please specify how exactly you installed spaCy.

[swagaths1]

This is not issue with installation of spacy

Please find the steps below how I installed spacy

step 1: I installed srsly by using below command
pip install srsly

step 2: I installed thinc by using below command
pip install thinc

step 3: I installed spacy by using below command
pip install spacy==2.3.5

After this steps Im able to see all the dependencies in my pip freeze list

Even Im able to import spacy

The issue is only while running pytest

[adrianeboyd]

Run the tests like this instead:

cd /some/other/directory
pytest --pyargs spacy.tests.test_architectures

Running the tests from within the tests/ directory only works with an editable install.

[swagaths1]

I'm getting following error

[swagaths1]

yes It was the same command

pytest --pyargs spacy.tests.test_ty.py
================================================================================================================ test session starts ================================================================================================================
platform darwin -- Python 3.9.13, pytest-7.2.0, pluggy-1.0.0
rootdir: /Users/swagath/Documents/GitHub
plugins: hypothesis-6.68.0
collected 0 items

================================================================================================================= warnings summary ==================================================================================================================
../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/pywrap_tensorflow.py:15
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/pywrap_tensorflow.py:15: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/google/protobuf/internal/containers.py:182
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/google/protobuf/internal/containers.py:182: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working
MutableMapping = collections.MutableMapping

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/google/protobuf/internal/containers.py:340
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/google/protobuf/internal/containers.py:340: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working
collections.MutableSequence.register(BaseContainer)

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:463
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:463: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:464
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:464: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:465
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:465: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:466
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:466: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:467
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:467: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:482
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:482: DeprecationWarning: np.object is a deprecated alias for the builtin object. To silence this warning, use object by itself. Doing this will not modify any behavior and is safe.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
(np.object, string),

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:483
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:483: DeprecationWarning: np.bool is a deprecated alias for the builtin bool. To silence this warning, use bool by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use np.bool_ here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
(np.bool, bool),

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:502
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:502: DeprecationWarning: np.object is a deprecated alias for the builtin object. To silence this warning, use object by itself. Doing this will not modify any behavior and is safe.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
types_pb2.DT_STRING: np.object,

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:506
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:506: DeprecationWarning: np.bool is a deprecated alias for the builtin bool. To silence this warning, use bool by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use np.bool_ here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
types_pb2.DT_BOOL: np.bool,

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:523
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:523: DeprecationWarning: np.object is a deprecated alias for the builtin object. To silence this warning, use object by itself. Doing this will not modify any behavior and is safe.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
types_pb2.DT_STRING_REF: np.object,

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:527
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py:527: DeprecationWarning: np.bool is a deprecated alias for the builtin bool. To silence this warning, use bool by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use np.bool_ here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
types_pb2.DT_BOOL_REF: np.bool,

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/tensor_util.py:126
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/tensor_util.py:126: DeprecationWarning: np.object is a deprecated alias for the builtin object. To silence this warning, use object by itself. Doing this will not modify any behavior and is safe.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
np.object: SlowAppendObjectArrayToTensorProto,

../../opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/tensor_util.py:127
/Users/swagath/opt/anaconda3/envs/test_transformer/lib/python3.9/site-packages/tensorflow/python/framework/tensor_util.py:127: DeprecationWarning: np.bool is a deprecated alias for the builtin bool. To silence this warning, use bool by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use np.bool_ here.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
np.bool: SlowAppendBoolArrayToTensorProto,

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=============================================================================================================== 16 warnings in 2.45s ================================================================================================================
ERROR: module or package not found: spacy.tests.test_ty.py (missing init.py?)

[swagaths1]

Hi Team any updates?

[swagaths1]

Hi Team. any updates As it looking like I have installed spacy and its dependencies correctly. could you please guide me to fix this issue and run pytest smoothly .

[rmitsch]

• Did you install spaCy v2.3.5 in a new environment from scratch?
• Note that it's pytest --pyargs spacy.tests.test_ty, not pytest --pyargs spacy.tests.test_ty.py. I.e. specify the module name, not the file name.

In general I recommend following the spaCy readme section on tests: execute the tests with python -m pytest --pyargs spacy.

[swagaths1]

yes Now its working as expected. Thank you very much for your support throughout