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<div class="header">
<h1 class="title">Hierarchy For All Packages</h1>
<span class="packageHierarchyLabel">Package Hierarchies:</span>
<ul class="horizontal">
<li><a href="etomica/package-tree.html">etomica</a>, </li>
<li><a href="etomica/action/package-tree.html">etomica.action</a>, </li>
<li><a href="etomica/action/activity/package-tree.html">etomica.action.activity</a>, </li>
<li><a href="etomica/action/controller/package-tree.html">etomica.action.controller</a>, </li>
<li><a href="etomica/AlkaneEH/package-tree.html">etomica.AlkaneEH</a>, </li>
<li><a href="etomica/association/package-tree.html">etomica.association</a>, </li>
<li><a href="etomica/association/AceticAcid/package-tree.html">etomica.association.AceticAcid</a>, </li>
<li><a href="etomica/association/GCPMWater/package-tree.html">etomica.association.GCPMWater</a>, </li>
<li><a href="etomica/atom/package-tree.html">etomica.atom</a>, </li>
<li><a href="etomica/atom/iterator/package-tree.html">etomica.atom.iterator</a>, </li>
<li><a href="etomica/box/package-tree.html">etomica.box</a>, </li>
<li><a href="etomica/cavity/package-tree.html">etomica.cavity</a>, </li>
<li><a href="etomica/chem/electrostatics/package-tree.html">etomica.chem.electrostatics</a>, </li>
<li><a href="etomica/chem/elements/package-tree.html">etomica.chem.elements</a>, </li>
<li><a href="etomica/compatibility/package-tree.html">etomica.compatibility</a>, </li>
<li><a href="etomica/config/package-tree.html">etomica.config</a>, </li>
<li><a href="etomica/data/package-tree.html">etomica.data</a>, </li>
<li><a href="etomica/data/histogram/package-tree.html">etomica.data.histogram</a>, </li>
<li><a href="etomica/data/history/package-tree.html">etomica.data.history</a>, </li>
<li><a href="etomica/data/meter/package-tree.html">etomica.data.meter</a>, </li>
<li><a href="etomica/data/types/package-tree.html">etomica.data.types</a>, </li>
<li><a href="etomica/dcvgcmd/package-tree.html">etomica.dcvgcmd</a>, </li>
<li><a href="etomica/dielectric/package-tree.html">etomica.dielectric</a>, </li>
<li><a href="etomica/dimer/package-tree.html">etomica.dimer</a>, </li>
<li><a href="etomica/eam/package-tree.html">etomica.eam</a>, </li>
<li><a href="etomica/eigenstuff/package-tree.html">etomica.eigenstuff</a>, </li>
<li><a href="etomica/exception/package-tree.html">etomica.exception</a>, </li>
<li><a href="etomica/freeenergy/npath/package-tree.html">etomica.freeenergy.npath</a>, </li>
<li><a href="etomica/graph/engine/package-tree.html">etomica.graph.engine</a>, </li>
<li><a href="etomica/graph/engine/impl/package-tree.html">etomica.graph.engine.impl</a>, </li>
<li><a href="etomica/graph/isomorphism/package-tree.html">etomica.graph.isomorphism</a>, </li>
<li><a href="etomica/graph/iterators/package-tree.html">etomica.graph.iterators</a>, </li>
<li><a href="etomica/graph/iterators/filters/package-tree.html">etomica.graph.iterators.filters</a>, </li>
<li><a href="etomica/graph/model/package-tree.html">etomica.graph.model</a>, </li>
<li><a href="etomica/graph/model/comparators/package-tree.html">etomica.graph.model.comparators</a>, </li>
<li><a href="etomica/graph/model/impl/package-tree.html">etomica.graph.model.impl</a>, </li>
<li><a href="etomica/graph/operations/package-tree.html">etomica.graph.operations</a>, </li>
<li><a href="etomica/graph/property/package-tree.html">etomica.graph.property</a>, </li>
<li><a href="etomica/graph/traversal/package-tree.html">etomica.graph.traversal</a>, </li>
<li><a href="etomica/graph/util/package-tree.html">etomica.graph.util</a>, </li>
<li><a href="etomica/graph/view/rasterizer/package-tree.html">etomica.graph.view.rasterizer</a>, </li>
<li><a href="etomica/graph/viewer/package-tree.html">etomica.graph.viewer</a>, </li>
<li><a href="etomica/graphics/package-tree.html">etomica.graphics</a>, </li>
<li><a href="etomica/heVLE/package-tree.html">etomica.heVLE</a>, </li>
<li><a href="etomica/integrator/package-tree.html">etomica.integrator</a>, </li>
<li><a href="etomica/integrator/mcmove/package-tree.html">etomica.integrator.mcmove</a>, </li>
<li><a href="etomica/interfacial/package-tree.html">etomica.interfacial</a>, </li>
<li><a href="etomica/kmc/package-tree.html">etomica.kmc</a>, </li>
<li><a href="etomica/lattice/package-tree.html">etomica.lattice</a>, </li>
<li><a href="etomica/lattice/crystal/package-tree.html">etomica.lattice.crystal</a>, </li>
<li><a href="etomica/liquidLJ/package-tree.html">etomica.liquidLJ</a>, </li>
<li><a href="etomica/mappedRdf/package-tree.html">etomica.mappedRdf</a>, </li>
<li><a href="etomica/mappedvirial/package-tree.html">etomica.mappedvirial</a>, </li>
<li><a href="etomica/math/package-tree.html">etomica.math</a>, </li>
<li><a href="etomica/math/discrete/package-tree.html">etomica.math.discrete</a>, </li>
<li><a href="etomica/math/function/package-tree.html">etomica.math.function</a>, </li>
<li><a href="etomica/math/geometry/package-tree.html">etomica.math.geometry</a>, </li>
<li><a href="etomica/math/geometry/coordinate/package-tree.html">etomica.math.geometry.coordinate</a>, </li>
<li><a href="etomica/math/numerical/package-tree.html">etomica.math.numerical</a>, </li>
<li><a href="etomica/meta/package-tree.html">etomica.meta</a>, </li>
<li><a href="etomica/meta/annotations/package-tree.html">etomica.meta.annotations</a>, </li>
<li><a href="etomica/meta/javadoc/package-tree.html">etomica.meta.javadoc</a>, </li>
<li><a href="etomica/meta/properties/package-tree.html">etomica.meta.properties</a>, </li>
<li><a href="etomica/meta/serializers/package-tree.html">etomica.meta.serializers</a>, </li>
<li><a href="etomica/meta/wrappers/package-tree.html">etomica.meta.wrappers</a>, </li>
<li><a href="etomica/metastable/package-tree.html">etomica.metastable</a>, </li>
<li><a href="etomica/models/clathrates/package-tree.html">etomica.models.clathrates</a>, </li>
<li><a href="etomica/models/co2/package-tree.html">etomica.models.co2</a>, </li>
<li><a href="etomica/models/nitrogen/package-tree.html">etomica.models.nitrogen</a>, </li>
<li><a href="etomica/models/OPLS/package-tree.html">etomica.models.OPLS</a>, </li>
<li><a href="etomica/models/rowley/package-tree.html">etomica.models.rowley</a>, </li>
<li><a href="etomica/models/traPPE/package-tree.html">etomica.models.traPPE</a>, </li>
<li><a href="etomica/models/water/package-tree.html">etomica.models.water</a>, </li>
<li><a href="etomica/modifier/package-tree.html">etomica.modifier</a>, </li>
<li><a href="etomica/modules/package-tree.html">etomica.modules</a>, </li>
<li><a href="etomica/modules/adsorption/package-tree.html">etomica.modules.adsorption</a>, </li>
<li><a href="etomica/modules/catalysis/package-tree.html">etomica.modules.catalysis</a>, </li>
<li><a href="etomica/modules/chainequilibrium/package-tree.html">etomica.modules.chainequilibrium</a>, </li>
<li><a href="etomica/modules/clustergenerator/package-tree.html">etomica.modules.clustergenerator</a>, </li>
<li><a href="etomica/modules/colloid/package-tree.html">etomica.modules.colloid</a>, </li>
<li><a href="etomica/modules/crystalviewer/package-tree.html">etomica.modules.crystalviewer</a>, </li>
<li><a href="etomica/modules/dcvgcmd/package-tree.html">etomica.modules.dcvgcmd</a>, </li>
<li><a href="etomica/modules/droplet/package-tree.html">etomica.modules.droplet</a>, </li>
<li><a href="etomica/modules/ensembles/package-tree.html">etomica.modules.ensembles</a>, </li>
<li><a href="etomica/modules/glass/package-tree.html">etomica.modules.glass</a>, </li>
<li><a href="etomica/modules/insertion/package-tree.html">etomica.modules.insertion</a>, </li>
<li><a href="etomica/modules/interfacial/package-tree.html">etomica.modules.interfacial</a>, </li>
<li><a href="etomica/modules/ljmd/package-tree.html">etomica.modules.ljmd</a>, </li>
<li><a href="etomica/modules/materialfracture/package-tree.html">etomica.modules.materialfracture</a>, </li>
<li><a href="etomica/modules/mu/package-tree.html">etomica.modules.mu</a>, </li>
<li><a href="etomica/modules/multiharmonic/package-tree.html">etomica.modules.multiharmonic</a>, </li>
<li><a href="etomica/modules/multiharmonic/mbar/package-tree.html">etomica.modules.multiharmonic.mbar</a>, </li>
<li><a href="etomica/modules/multiharmonic/overlap/package-tree.html">etomica.modules.multiharmonic.overlap</a>, </li>
<li><a href="etomica/modules/multiharmonic/umbrella/package-tree.html">etomica.modules.multiharmonic.umbrella</a>, </li>
<li><a href="etomica/modules/nucleation/package-tree.html">etomica.modules.nucleation</a>, </li>
<li><a href="etomica/modules/osmosis/package-tree.html">etomica.modules.osmosis</a>, </li>
<li><a href="etomica/modules/pistoncylinder/package-tree.html">etomica.modules.pistoncylinder</a>, </li>
<li><a href="etomica/modules/reactionequilibrium/package-tree.html">etomica.modules.reactionequilibrium</a>, </li>
<li><a href="etomica/modules/rheology/package-tree.html">etomica.modules.rheology</a>, </li>
<li><a href="etomica/modules/rosmosis/package-tree.html">etomica.modules.rosmosis</a>, </li>
<li><a href="etomica/modules/sam/package-tree.html">etomica.modules.sam</a>, </li>
<li><a href="etomica/modules/selfassembly/package-tree.html">etomica.modules.selfassembly</a>, </li>
<li><a href="etomica/modules/statistics/package-tree.html">etomica.modules.statistics</a>, </li>
<li><a href="etomica/modules/swmd/package-tree.html">etomica.modules.swmd</a>, </li>
<li><a href="etomica/modules/vle/package-tree.html">etomica.modules.vle</a>, </li>
<li><a href="etomica/molecule/package-tree.html">etomica.molecule</a>, </li>
<li><a href="etomica/molecule/iterator/package-tree.html">etomica.molecule.iterator</a>, </li>
<li><a href="etomica/nbr/package-tree.html">etomica.nbr</a>, </li>
<li><a href="etomica/nbr/cell/package-tree.html">etomica.nbr.cell</a>, </li>
<li><a href="etomica/nbr/cell/molecule/package-tree.html">etomica.nbr.cell.molecule</a>, </li>
<li><a href="etomica/nbr/list/package-tree.html">etomica.nbr.list</a>, </li>
<li><a href="etomica/nbr/list/molecule/package-tree.html">etomica.nbr.list.molecule</a>, </li>
<li><a href="etomica/nbr/molecule/package-tree.html">etomica.nbr.molecule</a>, </li>
<li><a href="etomica/nbr/site/package-tree.html">etomica.nbr.site</a>, </li>
<li><a href="etomica/normalmode/package-tree.html">etomica.normalmode</a>, </li>
<li><a href="etomica/normalmode/nptdemo/package-tree.html">etomica.normalmode.nptdemo</a>, </li>
<li><a href="etomica/osmoticvirial/package-tree.html">etomica.osmoticvirial</a>, </li>
<li><a href="etomica/overlap/package-tree.html">etomica.overlap</a>, </li>
<li><a href="etomica/parser/package-tree.html">etomica.parser</a>, </li>
<li><a href="etomica/polydisperseHS/package-tree.html">etomica.polydisperseHS</a>, </li>
<li><a href="etomica/potential/package-tree.html">etomica.potential</a>, </li>
<li><a href="etomica/rotation/package-tree.html">etomica.rotation</a>, </li>
<li><a href="etomica/server/package-tree.html">etomica.server</a>, </li>
<li><a href="etomica/server/core/construction/package-tree.html">etomica.server.core.construction</a>, </li>
<li><a href="etomica/server/dao/package-tree.html">etomica.server.dao</a>, </li>
<li><a href="etomica/server/health/package-tree.html">etomica.server.health</a>, </li>
<li><a href="etomica/server/representations/package-tree.html">etomica.server.representations</a>, </li>
<li><a href="etomica/server/resources/package-tree.html">etomica.server.resources</a>, </li>
<li><a href="etomica/server/resources/data/package-tree.html">etomica.server.resources.data</a>, </li>
<li><a href="etomica/server/serializers/package-tree.html">etomica.server.serializers</a>, </li>
<li><a href="etomica/simulation/package-tree.html">etomica.simulation</a>, </li>
<li><a href="etomica/simulation/prototypes/package-tree.html">etomica.simulation.prototypes</a>, </li>
<li><a href="etomica/space/package-tree.html">etomica.space</a>, </li>
<li><a href="etomica/space1d/package-tree.html">etomica.space1d</a>, </li>
<li><a href="etomica/space2d/package-tree.html">etomica.space2d</a>, </li>
<li><a href="etomica/space3d/package-tree.html">etomica.space3d</a>, </li>
<li><a href="etomica/spaceNd/package-tree.html">etomica.spaceNd</a>, </li>
<li><a href="etomica/species/package-tree.html">etomica.species</a>, </li>
<li><a href="etomica/spin/heisenberg/package-tree.html">etomica.spin.heisenberg</a>, </li>
<li><a href="etomica/spin/ising/package-tree.html">etomica.spin.ising</a>, </li>
<li><a href="etomica/starpolymer/package-tree.html">etomica.starpolymer</a>, </li>
<li><a href="etomica/statmech/package-tree.html">etomica.statmech</a>, </li>
<li><a href="etomica/surfacetension/package-tree.html">etomica.surfacetension</a>, </li>
<li><a href="etomica/tests/package-tree.html">etomica.tests</a>, </li>
<li><a href="etomica/tmmc/package-tree.html">etomica.tmmc</a>, </li>
<li><a href="etomica/units/package-tree.html">etomica.units</a>, </li>
<li><a href="etomica/units/dimensions/package-tree.html">etomica.units.dimensions</a>, </li>
<li><a href="etomica/units/gui/package-tree.html">etomica.units.gui</a>, </li>
<li><a href="etomica/units/systems/package-tree.html">etomica.units.systems</a>, </li>
<li><a href="etomica/util/package-tree.html">etomica.util</a>, </li>
<li><a href="etomica/util/collections/package-tree.html">etomica.util.collections</a>, </li>
<li><a href="etomica/util/numerical/package-tree.html">etomica.util.numerical</a>, </li>
<li><a href="etomica/util/random/package-tree.html">etomica.util.random</a>, </li>
<li><a href="etomica/veos/package-tree.html">etomica.veos</a>, </li>
<li><a href="etomica/veos/bigdecimal/package-tree.html">etomica.veos.bigdecimal</a>, </li>
<li><a href="etomica/virial/package-tree.html">etomica.virial</a>, </li>
<li><a href="etomica/virial/cluster/package-tree.html">etomica.virial.cluster</a>, </li>
<li><a href="etomica/virial/GUI/package-tree.html">etomica.virial.GUI</a>, </li>
<li><a href="etomica/virial/GUI/components/package-tree.html">etomica.virial.GUI.components</a>, </li>
<li><a href="etomica/virial/GUI/containers/package-tree.html">etomica.virial.GUI.containers</a>, </li>
<li><a href="etomica/virial/GUI/controllers/package-tree.html">etomica.virial.GUI.controllers</a>, </li>
<li><a href="etomica/virial/GUI/models/package-tree.html">etomica.virial.GUI.models</a>, </li>
<li><a href="etomica/virial/GUI/views/package-tree.html">etomica.virial.GUI.views</a>, </li>
<li><a href="etomica/virial/overlap/package-tree.html">etomica.virial.overlap</a>, </li>
<li><a href="etomica/virial/paralleltempering/package-tree.html">etomica.virial.paralleltempering</a>, </li>
<li><a href="etomica/virial/simulations/package-tree.html">etomica.virial.simulations</a>, </li>
<li><a href="etomica/zeolite/package-tree.html">etomica.zeolite</a>, </li>
<li><a href="g3dsys/control/package-tree.html">g3dsys.control</a>, </li>
<li><a href="g3dsys/images/package-tree.html">g3dsys.images</a>, </li>
<li><a href="org/jmol/api/package-tree.html">org.jmol.api</a>, </li>
<li><a href="org/jmol/awt/package-tree.html">org.jmol.awt</a>, </li>
<li><a href="org/jmol/constant/package-tree.html">org.jmol.constant</a>, </li>
<li><a href="org/jmol/g3d/package-tree.html">org.jmol.g3d</a>, </li>
<li><a href="org/jmol/script/package-tree.html">org.jmol.script</a>, </li>
<li><a href="org/jmol/util/package-tree.html">org.jmol.util</a>, </li>
<li><a href="org/jmol/viewer/package-tree.html">org.jmol.viewer</a></li>
</ul>
</div>
<div class="contentContainer">
<h2 title="Class Hierarchy">Class Hierarchy</h2>
<ul>
<li class="circle">java.lang.Object
<ul>
<li class="circle">etomica.graph.model.impl.<a href="etomica/graph/model/impl/AbstractBitmap.html" title="class in etomica.graph.model.impl"><span class="typeNameLink">AbstractBitmap</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/Bitmap.html" title="interface in etomica.graph.model">Bitmap</a>)
<ul>
<li class="circle">etomica.graph.model.impl.<a href="etomica/graph/model/impl/BitmapOfLong.html" title="class in etomica.graph.model.impl"><span class="typeNameLink">BitmapOfLong</span></a></li>
<li class="circle">etomica.graph.model.impl.<a href="etomica/graph/model/impl/BitmapOfLongVector.html" title="class in etomica.graph.model.impl"><span class="typeNameLink">BitmapOfLongVector</span></a></li>
</ul>
</li>
<li class="circle">java.util.AbstractCollection&lt;E&gt; (implements java.util.Collection&lt;E&gt;)
<ul>
<li class="circle">java.util.AbstractList&lt;E&gt; (implements java.util.List&lt;E&gt;)
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomArrayList.html" title="class in etomica.atom"><span class="typeNameLink">AtomArrayList</span></a> (implements etomica.atom.<a href="etomica/atom/IAtomList.html" title="interface in etomica.atom">IAtomList</a>, java.util.RandomAccess)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomListFromArray.html" title="class in etomica.atom"><span class="typeNameLink">AtomListFromArray</span></a> (implements etomica.atom.<a href="etomica/atom/IAtomList.html" title="interface in etomica.atom">IAtomList</a>)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomPair.html" title="class in etomica.atom"><span class="typeNameLink">AtomPair</span></a> (implements etomica.atom.<a href="etomica/atom/IAtomList.html" title="interface in etomica.atom">IAtomList</a>, java.util.RandomAccess)</li>
<li class="circle">etomica.box.<a href="etomica/box/AtomSetAllMolecules.html" title="class in etomica.box"><span class="typeNameLink">AtomSetAllMolecules</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculeList.html" title="interface in etomica.molecule">IMoleculeList</a>)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomSetSinglet.html" title="class in etomica.atom"><span class="typeNameLink">AtomSetSinglet</span></a> (implements etomica.atom.<a href="etomica/atom/IAtomList.html" title="interface in etomica.atom">IAtomList</a>)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeArrayList.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculeArrayList</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculeList.html" title="interface in etomica.molecule">IMoleculeList</a>, java.util.RandomAccess)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculePair.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculePair</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculeList.html" title="interface in etomica.molecule">IMoleculeList</a>, java.util.RandomAccess)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeSetSinglet.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculeSetSinglet</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculeList.html" title="interface in etomica.molecule">IMoleculeList</a>)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">java.util.AbstractMap&lt;K,V&gt; (implements java.util.Map&lt;K,V&gt;)
<ul>
<li class="circle">java.util.concurrent.ConcurrentHashMap&lt;K,V&gt; (implements java.util.concurrent.ConcurrentMap&lt;K,V&gt;, java.io.Serializable)
<ul>
<li class="circle">etomica.server.dao.<a href="etomica/server/dao/DataStreamStore.html" title="class in etomica.server.dao"><span class="typeNameLink">DataStreamStore</span></a></li>
<li class="circle">etomica.server.dao.<a href="etomica/server/dao/SimulationStore.html" title="class in etomica.server.dao"><span class="typeNameLink">SimulationStore</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.graph.isomorphism.<a href="etomica/graph/isomorphism/AbstractSearchState.html" title="class in etomica.graph.isomorphism"><span class="typeNameLink">AbstractSearchState</span></a> (implements etomica.graph.isomorphism.<a href="etomica/graph/isomorphism/SearchState.html" title="interface in etomica.graph.isomorphism">SearchState</a>)
<ul>
<li class="circle">etomica.graph.isomorphism.<a href="etomica/graph/isomorphism/UllmanSearchState.html" title="class in etomica.graph.isomorphism"><span class="typeNameLink">UllmanSearchState</span></a></li>
<li class="circle">etomica.graph.isomorphism.<a href="etomica/graph/isomorphism/VF2SearchState.html" title="class in etomica.graph.isomorphism"><span class="typeNameLink">VF2SearchState</span></a></li>
<li class="circle">etomica.graph.isomorphism.<a href="etomica/graph/isomorphism/VFSearchState.html" title="class in etomica.graph.isomorphism"><span class="typeNameLink">VFSearchState</span></a></li>
</ul>
</li>
<li class="circle">javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceTableModelGeneric.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceTableModelGeneric</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelMoleculeListDisplayTable.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelMoleculeListDisplayTable</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelMoleculeListDisplayTable_new.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelMoleculeListDisplayTable_new</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelPotParamDisplayTable.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelPotParamDisplayTable</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/AbstractTraversal.html" title="class in etomica.graph.traversal"><span class="typeNameLink">AbstractTraversal</span></a> (implements etomica.graph.traversal.<a href="etomica/graph/traversal/Traversal.html" title="interface in etomica.graph.traversal">Traversal</a>)
<ul>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/Biconnected.html" title="class in etomica.graph.traversal"><span class="typeNameLink">Biconnected</span></a>
<ul>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/BiconectedNodalPoint.html" title="class in etomica.graph.traversal"><span class="typeNameLink">BiconectedNodalPoint</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/BreadthFirst.html" title="class in etomica.graph.traversal"><span class="typeNameLink">BreadthFirst</span></a></li>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/DepthFirst.html" title="class in etomica.graph.traversal"><span class="typeNameLink">DepthFirst</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverage.StatType.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverage.StatType</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageBlockless.AllData.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageBlockless.AllData</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageBlockless.StatType.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageBlockless.StatType</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageBlocklessSlim.StatType.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageBlocklessSlim.StatType</span></a></li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/AccumulatorOverlapAverageUa2.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">AccumulatorOverlapAverageUa2</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AccumulatorPTensor.html" title="class in etomica.modules.glass"><span class="typeNameLink">AccumulatorPTensor</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AccumulatorPTensor.TemperatureSink.html" title="class in etomica.modules.glass"><span class="typeNameLink">AccumulatorPTensor.TemperatureSink</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.models.OPLS.<a href="etomica/models/OPLS/AceticAcidModPotentialHelper.html" title="class in etomica.models.OPLS"><span class="typeNameLink">AceticAcidModPotentialHelper</span></a></li>
<li class="circle">etomica.models.OPLS.<a href="etomica/models/OPLS/AceticAcidPotentialHelper.html" title="class in etomica.models.OPLS"><span class="typeNameLink">AceticAcidPotentialHelper</span></a></li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ACollectionBondedPotential.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">ACollectionBondedPotential</span></a>
<ul>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/CollectionBondedPotentialAlcohols.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">CollectionBondedPotentialAlcohols</span></a></li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/CollectionBondedPotentialAlkanes.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">CollectionBondedPotentialAlkanes</span></a></li>
</ul>
</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ActionConfigWindow.html" title="class in etomica.graphics"><span class="typeNameLink">ActionConfigWindow</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ActionGraphic.html" title="class in etomica.graphics"><span class="typeNameLink">ActionGraphic</span></a> (implements java.awt.event.ActionListener, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.action.<a href="etomica/action/ActionGroupSeries.html" title="class in etomica.action"><span class="typeNameLink">ActionGroupSeries</span></a> (implements etomica.action.<a href="etomica/action/ActionGroup.html" title="interface in etomica.action">ActionGroup</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ActionHistoryWindow.html" title="class in etomica.graphics"><span class="typeNameLink">ActionHistoryWindow</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/ActionIntegrate.html" title="class in etomica.action"><span class="typeNameLink">ActionIntegrate</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/ActionMinimizeEnergy.html" title="class in etomica.action"><span class="typeNameLink">ActionMinimizeEnergy</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/ActionMinimizeEnergy.MyForceTorque.html" title="class in etomica.action"><span class="typeNameLink">ActionMinimizeEnergy.MyForceTorque</span></a> (implements etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator">Integrator.Forcible</a>, etomica.integrator.<a href="etomica/integrator/Integrator.Torquable.html" title="interface in etomica.integrator">Integrator.Torquable</a>)</li>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/ActionPistonUpdate.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">ActionPistonUpdate</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.surfacetension.<a href="etomica/surfacetension/ActionRecenter.html" title="class in etomica.surfacetension"><span class="typeNameLink">ActionRecenter</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/ActionToggle.html" title="class in etomica.action"><span class="typeNameLink">ActionToggle</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ActionVelocityWindow.html" title="class in etomica.graphics"><span class="typeNameLink">ActionVelocityWindow</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.controller.<a href="etomica/action/controller/Activity.html" title="class in etomica.action.controller"><span class="typeNameLink">Activity</span></a>
<ul>
<li class="circle">etomica.action.activity.<a href="etomica/action/activity/ActivityIntegrate.html" title="class in etomica.action.activity"><span class="typeNameLink">ActivityIntegrate</span></a></li>
</ul>
</li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSpline.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSpline</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmoother.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmoother</span></a>
<ul>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmootherDy.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmootherDy</span></a></li>
</ul>
</li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmootherApp.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmootherApp</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmootherApp.PlotAction.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmootherApp.PlotAction</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmootherDyApp.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmootherDyApp</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmootherDyApp.PlotAction.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmootherDyApp.PlotAction</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmootherMain.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmootherMain</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/AllIsomorphs.html" title="class in etomica.graph.operations"><span class="typeNameLink">AllIsomorphs</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/AllIsomorphs.AllIsomorphsParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">AllIsomorphs.AllIsomorphsParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ANIntergroupCoupled.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ANIntergroupCoupled</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ANIntergroupExchange.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ANIntergroupExchange</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ANIntragroupExchange.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ANIntragroupExchange</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/Api1ACell.html" title="class in etomica.nbr.cell"><span class="typeNameLink">Api1ACell</span></a> (implements etomica.nbr.cell.<a href="etomica/nbr/cell/AtomsetIteratorCellular.html" title="interface in etomica.nbr.cell">AtomsetIteratorCellular</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorTargetable.html" title="interface in etomica.atom.iterator">AtomsetIteratorTargetable</a>)</li>
<li class="circle">etomica.nbr.site.<a href="etomica/nbr/site/Api1ASite.html" title="class in etomica.nbr.site"><span class="typeNameLink">Api1ASite</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorPDT.html" title="interface in etomica.atom.iterator">AtomsetIteratorPDT</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiBuilder.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiBuilder</span></a></li>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/ApiFilteredCylinder.AtomFilterInCylinder.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">ApiFilteredCylinder.AtomFilterInCylinder</span></a></li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiIndexList.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiIndexList</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiInnerVariable.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiInnerVariable</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomLeafsetIterator.html" title="interface in etomica.atom.iterator">AtomLeafsetIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiInterArrayList.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiInterArrayList</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomLeafsetIterator.html" title="interface in etomica.atom.iterator">AtomLeafsetIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiIntergroup.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiIntergroup</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiIntergroupCoupled.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiIntergroupCoupled</span></a></li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiIntergroupExchange.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiIntergroupExchange</span></a></li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiIntergroupIntraSpecies.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiIntergroupIntraSpecies</span></a></li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiIntraArrayList.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiIntraArrayList</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomLeafsetIterator.html" title="interface in etomica.atom.iterator">AtomLeafsetIterator</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiLeafAtoms.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiLeafAtoms</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBoxDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBoxDependent</a>)
<ul>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/ApiFilteredCylinder.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">ApiFilteredCylinder</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBoxDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBoxDependent</a>)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/ApiIntragroup.html" title="class in etomica.atom.iterator"><span class="typeNameLink">ApiIntragroup</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/AppControllerMixtureBuilder.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">AppControllerMixtureBuilder</span></a></li>
<li class="circle">io.dropwizard.Application&lt;T&gt;
<ul>
<li class="circle">etomica.server.<a href="etomica/server/EtomicaServer.html" title="class in etomica.server"><span class="typeNameLink">EtomicaServer</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.GUI.<a href="etomica/virial/GUI/ApplicationMixtureBuilder.html" title="class in etomica.virial.GUI"><span class="typeNameLink">ApplicationMixtureBuilder</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/AppModelMixtureBuilder.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">AppModelMixtureBuilder</span></a></li>
<li class="circle">etomica.virial.GUI.views.<a href="etomica/virial/GUI/views/AppViewMixtureBuilder.html" title="class in etomica.virial.GUI.views"><span class="typeNameLink">AppViewMixtureBuilder</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/ArrayA2B.html" title="class in etomica.normalmode"><span class="typeNameLink">ArrayA2B</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/ArrayB2A.html" title="class in etomica.normalmode"><span class="typeNameLink">ArrayB2A</span></a></li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ArrayMoleculeDisplayList.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">ArrayMoleculeDisplayList</span></a></li>
<li class="circle">etomica.meta.properties.<a href="etomica/meta/properties/ArrayProperty.html" title="class in etomica.meta.properties"><span class="typeNameLink">ArrayProperty</span></a> (implements etomica.meta.properties.<a href="etomica/meta/properties/Property.html" title="interface in etomica.meta.properties">Property</a>)</li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/ArrayReader1D.html" title="class in etomica.math.numerical"><span class="typeNameLink">ArrayReader1D</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/ArrayReader1D.html" title="class in etomica.normalmode"><span class="typeNameLink">ArrayReader1D</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/ArrayReader2D.html" title="class in etomica.normalmode"><span class="typeNameLink">ArrayReader2D</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/Arrays.html" title="class in etomica.util"><span class="typeNameLink">Arrays</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/ArrayUtil.html" title="class in org.jmol.util"><span class="typeNameLink">ArrayUtil</span></a></li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/AssignmentImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">AssignmentImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.Assignment.html" title="interface in etomica.graph.engine">Parser.Assignment</a>)</li>
<li class="circle">etomica.association.<a href="etomica/association/AssociationHelperBranched.html" title="class in etomica.association"><span class="typeNameLink">AssociationHelperBranched</span></a> (implements etomica.association.<a href="etomica/association/IAssociationHelper.html" title="interface in etomica.association">IAssociationHelper</a>)</li>
<li class="circle">etomica.association.<a href="etomica/association/AssociationHelperDouble.html" title="class in etomica.association"><span class="typeNameLink">AssociationHelperDouble</span></a> (implements etomica.association.<a href="etomica/association/IAssociationHelper.html" title="interface in etomica.association">IAssociationHelper</a>)</li>
<li class="circle">etomica.association.<a href="etomica/association/AssociationHelperMolecule.html" title="class in etomica.association"><span class="typeNameLink">AssociationHelperMolecule</span></a> (implements etomica.association.<a href="etomica/association/IAssociationHelperMolecule.html" title="interface in etomica.association">IAssociationHelperMolecule</a>)</li>
<li class="circle">etomica.association.<a href="etomica/association/AssociationHelperSingle.html" title="class in etomica.association"><span class="typeNameLink">AssociationHelperSingle</span></a> (implements etomica.association.<a href="etomica/association/IAssociationHelper.html" title="interface in etomica.association">IAssociationHelper</a>)</li>
<li class="circle">etomica.association.<a href="etomica/association/AssociationManager.html" title="class in etomica.association"><span class="typeNameLink">AssociationManager</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.util.<a href="etomica/util/IListener.html" title="interface in etomica.util">IListener</a>&lt;E&gt;)</li>
<li class="circle">etomica.association.<a href="etomica/association/AssociationManagerMolecule.html" title="class in etomica.association"><span class="typeNameLink">AssociationManagerMolecule</span></a> (implements etomica.util.<a href="etomica/util/IListener.html" title="interface in etomica.util">IListener</a>&lt;E&gt;, etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/Atom.html" title="class in etomica.atom"><span class="typeNameLink">Atom</span></a> (implements etomica.atom.<a href="etomica/atom/IAtom.html" title="interface in etomica.atom">IAtom</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomLeafDynamic.html" title="class in etomica.atom"><span class="typeNameLink">AtomLeafDynamic</span></a> (implements etomica.atom.<a href="etomica/atom/IAtomKinetic.html" title="interface in etomica.atom">IAtomKinetic</a>)
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomOrientedDynamic.html" title="class in etomica.atom"><span class="typeNameLink">AtomOrientedDynamic</span></a> (implements etomica.atom.<a href="etomica/atom/IAtomOrientedKinetic.html" title="interface in etomica.atom">IAtomOrientedKinetic</a>)</li>
</ul>
</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomOriented.html" title="class in etomica.atom"><span class="typeNameLink">AtomOriented</span></a> (implements etomica.atom.<a href="etomica/atom/IAtomOriented.html" title="interface in etomica.atom">IAtomOriented</a>)
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomHydrogen.html" title="class in etomica.atom"><span class="typeNameLink">AtomHydrogen</span></a></li>
</ul>
</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomOrientedQuaternion.html" title="class in etomica.atom"><span class="typeNameLink">AtomOrientedQuaternion</span></a></li>
</ul>
</li>
<li class="circle">etomica.action.<a href="etomica/action/AtomActionRandomizeVelocity.html" title="class in etomica.action"><span class="typeNameLink">AtomActionRandomizeVelocity</span></a> (implements etomica.action.<a href="etomica/action/AtomAction.html" title="interface in etomica.action">AtomAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.action.<a href="etomica/action/AtomActionRotateBy.html" title="class in etomica.action"><span class="typeNameLink">AtomActionRotateBy</span></a> (implements etomica.action.<a href="etomica/action/AtomAction.html" title="interface in etomica.action">AtomAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.action.<a href="etomica/action/AtomActionTransformed.html" title="class in etomica.action"><span class="typeNameLink">AtomActionTransformed</span></a> (implements etomica.action.<a href="etomica/action/AtomAction.html" title="interface in etomica.action">AtomAction</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/AtomActionTransformed.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">AtomActionTransformed</span></a> (implements etomica.action.<a href="etomica/action/AtomAction.html" title="interface in etomica.action">AtomAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/AtomActionTranslateBy.html" title="class in etomica.action"><span class="typeNameLink">AtomActionTranslateBy</span></a> (implements etomica.action.<a href="etomica/action/AtomAction.html" title="interface in etomica.action">AtomAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomGroupVelocityAverage.html" title="class in etomica.atom"><span class="typeNameLink">AtomGroupVelocityAverage</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomHardStressCollector.html" title="class in etomica.modules.glass"><span class="typeNameLink">AtomHardStressCollector</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/AtomStressSource.html" title="interface in etomica.modules.glass">AtomStressSource</a>, etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorArrayListAdjacent.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorArrayListAdjacent</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorAtomDependent.html" title="interface in etomica.atom.iterator">AtomIteratorAtomDependent</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorArrayListSimple.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorArrayListSimple</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIterator.html" title="interface in etomica.atom.iterator">AtomIterator</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorArrayList.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorArrayList</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorAtomDependent.html" title="interface in etomica.atom.iterator">AtomIteratorAtomDependent</a>)
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBasisAdjustableStart.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorBasisAdjustableStart</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomIteratorBasisDependent</a>)</li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBasis.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorBasis</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomIteratorBasisDependent</a>)
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBasisFilteredType.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorBasisFilteredType</span></a></li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBasisFilteredType2.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorBasisFilteredType2</span></a></li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorLeafAtoms.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorLeafAtoms</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBoxDependent.html" title="interface in etomica.atom.iterator">AtomIteratorBoxDependent</a>)
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorLeafFilteredType.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorLeafFilteredType</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorNull.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorNull</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIterator.html" title="interface in etomica.atom.iterator">AtomIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorSinglet.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorSinglet</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorAtomDependent.html" title="interface in etomica.atom.iterator">AtomIteratorAtomDependent</a>, java.io.Serializable)</li>
<li class="circle">etomica.meta.properties.<a href="etomica/meta/properties/AtomListProperty.html" title="class in etomica.meta.properties"><span class="typeNameLink">AtomListProperty</span></a> (implements etomica.meta.properties.<a href="etomica/meta/properties/Property.html" title="interface in etomica.meta.properties">Property</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomNbrClusterer.html" title="class in etomica.modules.glass"><span class="typeNameLink">AtomNbrClusterer</span></a></li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/AtomNeighborLists.html" title="class in etomica.nbr.list"><span class="typeNameLink">AtomNeighborLists</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/AtomPairSet.html" title="class in etomica.virial"><span class="typeNameLink">AtomPairSet</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/AtomPotentialList.html" title="class in etomica.nbr.list"><span class="typeNameLink">AtomPotentialList</span></a></li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/Atomset3IteratorIndexList.html" title="class in etomica.atom.iterator"><span class="typeNameLink">Atomset3IteratorIndexList</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/Atomset4IteratorIndexList.html" title="class in etomica.atom.iterator"><span class="typeNameLink">Atomset4IteratorIndexList</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorAllLeafAtoms.html" title="class in etomica.atom.iterator"><span class="typeNameLink">AtomsetIteratorAllLeafAtoms</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomSignalKineticEnergy.html" title="class in etomica.modules.glass"><span class="typeNameLink">AtomSignalKineticEnergy</span></a> (implements etomica.data.meter.<a href="etomica/data/meter/MeterStructureFactor.AtomSignalSource.html" title="interface in etomica.data.meter">MeterStructureFactor.AtomSignalSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomSignalStress.html" title="class in etomica.modules.glass"><span class="typeNameLink">AtomSignalStress</span></a> (implements etomica.data.meter.<a href="etomica/data/meter/MeterStructureFactor.AtomSignalSource.html" title="interface in etomica.data.meter">MeterStructureFactor.AtomSignalSource</a>)</li>
<li class="circle">etomica.nbr.site.<a href="etomica/nbr/site/AtomSite.html" title="class in etomica.nbr.site"><span class="typeNameLink">AtomSite</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/AtomSourceRandomDimer.html" title="class in etomica.association"><span class="typeNameLink">AtomSourceRandomDimer</span></a> (implements etomica.atom.<a href="etomica/atom/AtomSource.html" title="interface in etomica.atom">AtomSource</a>)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomSourceRandomLeaf.html" title="class in etomica.atom"><span class="typeNameLink">AtomSourceRandomLeaf</span></a> (implements etomica.atom.<a href="etomica/atom/AtomSource.html" title="interface in etomica.atom">AtomSource</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.association.<a href="etomica/association/AtomSourceRandomMonomer.html" title="class in etomica.association"><span class="typeNameLink">AtomSourceRandomMonomer</span></a></li>
</ul>
</li>
<li class="circle">etomica.association.<a href="etomica/association/AtomSourceRandomSmer.html" title="class in etomica.association"><span class="typeNameLink">AtomSourceRandomSmer</span></a> (implements etomica.atom.<a href="etomica/atom/AtomSource.html" title="interface in etomica.atom">AtomSource</a>)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomSourceRandomSpecies.html" title="class in etomica.atom"><span class="typeNameLink">AtomSourceRandomSpecies</span></a> (implements etomica.atom.<a href="etomica/atom/AtomSource.html" title="interface in etomica.atom">AtomSource</a>)</li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/AtomTestChainLength.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">AtomTestChainLength</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.atom.<a href="etomica/atom/AtomTestCollective.html" title="interface in etomica.atom">AtomTestCollective</a>)</li>
<li class="circle">etomica.modules.selfassembly.<a href="etomica/modules/selfassembly/AtomTestChainLength.html" title="class in etomica.modules.selfassembly"><span class="typeNameLink">AtomTestChainLength</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.atom.<a href="etomica/atom/AtomTestCollective.html" title="interface in etomica.atom">AtomTestCollective</a>)</li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/AtomTestChainLength.LengthAgent.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">AtomTestChainLength.LengthAgent</span></a></li>
<li class="circle">etomica.modules.selfassembly.<a href="etomica/modules/selfassembly/AtomTestChainLength.LengthAgent.html" title="class in etomica.modules.selfassembly"><span class="typeNameLink">AtomTestChainLength.LengthAgent</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomTestDeviation.html" title="class in etomica.modules.glass"><span class="typeNameLink">AtomTestDeviation</span></a> (implements etomica.atom.<a href="etomica/atom/AtomTest.html" title="interface in etomica.atom">AtomTest</a>)</li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/AtomTestLiquid.html" title="class in etomica.modules.droplet"><span class="typeNameLink">AtomTestLiquid</span></a> (implements etomica.atom.<a href="etomica/atom/AtomTestCollective.html" title="interface in etomica.atom">AtomTestCollective</a>)</li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/AtomTestLiquidAtomic.html" title="class in etomica.modules.droplet"><span class="typeNameLink">AtomTestLiquidAtomic</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.atom.<a href="etomica/atom/AtomTestCollective.html" title="interface in etomica.atom">AtomTestCollective</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomTestRandom.html" title="class in etomica.modules.glass"><span class="typeNameLink">AtomTestRandom</span></a> (implements etomica.atom.<a href="etomica/atom/AtomTest.html" title="interface in etomica.atom">AtomTest</a>)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomToAtomSetFixed.html" title="class in etomica.atom"><span class="typeNameLink">AtomToAtomSetFixed</span></a> (implements etomica.atom.<a href="etomica/atom/AtomToAtomLeafList.html" title="interface in etomica.atom">AtomToAtomLeafList</a>, etomica.atom.<a href="etomica/atom/AtomToIndex.html" title="interface in etomica.atom">AtomToIndex</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomToIndexChild.html" title="class in etomica.atom"><span class="typeNameLink">AtomToIndexChild</span></a> (implements etomica.atom.<a href="etomica/atom/AtomToIndex.html" title="interface in etomica.atom">AtomToIndex</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomToParentChildList.html" title="class in etomica.atom"><span class="typeNameLink">AtomToParentChildList</span></a> (implements etomica.atom.<a href="etomica/atom/AtomToAtomLeafList.html" title="interface in etomica.atom">AtomToAtomLeafList</a>, java.io.Serializable)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomType.html" title="class in etomica.atom"><span class="typeNameLink">AtomType</span></a> (implements java.lang.Comparable&lt;T&gt;)
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomTypeOriented.html" title="class in etomica.atom"><span class="typeNameLink">AtomTypeOriented</span></a></li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomTypeSpheroPolyhedron.html" title="class in etomica.atom"><span class="typeNameLink">AtomTypeSpheroPolyhedron</span></a></li>
</ul>
</li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomTypeAgentManager.html" title="class in etomica.atom"><span class="typeNameLink">AtomTypeAgentManager</span></a>&lt;E&gt;</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/AxisAngle4f.html" title="class in org.jmol.util"><span class="typeNameLink">AxisAngle4f</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.modules.vle.<a href="etomica/modules/vle/B2Fit.FunctionB2LJQ.html" title="class in etomica.modules.vle"><span class="typeNameLink">B2Fit.FunctionB2LJQ</span></a> (implements etomica.math.function.<a href="etomica/math/function/Function.html" title="interface in etomica.math.function">Function</a>)</li>
<li class="circle">etomica.modules.vle.<a href="etomica/modules/vle/B2Fit.FunctionMayerB2LJQ.html" title="class in etomica.modules.vle"><span class="typeNameLink">B2Fit.FunctionMayerB2LJQ</span></a> (implements etomica.math.function.<a href="etomica/math/function/Function.html" title="interface in etomica.math.function">Function</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/B2ForSphericallySymmetricUByTrapezoidRule.html" title="class in etomica.virial"><span class="typeNameLink">B2ForSphericallySymmetricUByTrapezoidRule</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/B2Ionic.html" title="class in etomica.virial"><span class="typeNameLink">B2Ionic</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/B3ForSphericallySymmetricU.html" title="class in etomica.virial"><span class="typeNameLink">B3ForSphericallySymmetricU</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/B3LJ.html" title="class in etomica.virial"><span class="typeNameLink">B3LJ</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/B3NonAddForSphericallySymmetricU.html" title="class in etomica.virial"><span class="typeNameLink">B3NonAddForSphericallySymmetricU</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/B4FFTLJ.html" title="class in etomica.virial"><span class="typeNameLink">B4FFTLJ</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/B5FFTLJ.html" title="class in etomica.virial"><span class="typeNameLink">B5FFTLJ</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/B6FFTLJ.html" title="class in etomica.virial"><span class="typeNameLink">B6FFTLJ</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/Basis.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">Basis</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisBetaSnA5.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisBetaSnA5</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/BasisBigCell.html" title="class in etomica.normalmode"><span class="typeNameLink">BasisBigCell</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisCubicBcc.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisCubicBcc</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisCubicDiamond.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisCubicDiamond</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisCubicFcc.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisCubicFcc</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisCubicFccDiamond.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisCubicFccDiamond</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisHcp.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisHcp</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisHcp4.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisHcp4</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisHcpBaseCentered.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisHcpBaseCentered</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisMonatomic.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisMonatomic</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/BasisOrthorhombicHexagonal.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">BasisOrthorhombicHexagonal</span></a></li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/ConfigurationCatalysis.BasisOrthorhombicHexagonal3D.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">ConfigurationCatalysis.BasisOrthorhombicHexagonal3D</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/BCVisitor.html" title="class in etomica.graph.traversal"><span class="typeNameLink">BCVisitor</span></a> (implements etomica.graph.traversal.<a href="etomica/graph/traversal/TraversalVisitor.html" title="interface in etomica.graph.traversal">TraversalVisitor</a>)</li>
<li class="circle">etomica.<a href="etomica/BenchApiAACell.html" title="class in etomica"><span class="typeNameLink">BenchApiAACell</span></a></li>
<li class="circle">etomica.<a href="etomica/BenchBox.html" title="class in etomica"><span class="typeNameLink">BenchBox</span></a></li>
<li class="circle">etomica.<a href="etomica/BenchBox.VectorSystem.html" title="class in etomica"><span class="typeNameLink">BenchBox.VectorSystem</span></a> (implements etomica.<a href="etomica/BenchBox.IVecSys.html" title="interface in etomica">BenchBox.IVecSys</a>)</li>
<li class="circle">etomica.<a href="etomica/BenchNbrUpdates.html" title="class in etomica"><span class="typeNameLink">BenchNbrUpdates</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimCatalysis.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimCatalysis</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimDCVGCMD.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimDCVGCMD</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimHSMD3D.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimHSMD3D</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimLammpsLJ.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimLammpsLJ</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimLJGCMC3D.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimLJGCMC3D</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimLJMC3D.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimLJMC3D</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimLJMD3D.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimLJMD3D</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimSurfacetensionLJMC.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimSurfacetensionLJMC</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimSWChain.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimSWChain</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/BenchSimVirialH2OGCPMD.html" title="class in etomica.virial.simulations"><span class="typeNameLink">BenchSimVirialH2OGCPMD</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/BenchSimVirialLJ.html" title="class in etomica.simulation"><span class="typeNameLink">BenchSimVirialLJ</span></a></li>
<li class="circle">etomica.space.<a href="etomica/space/BenchVector.html" title="class in etomica.space"><span class="typeNameLink">BenchVector</span></a></li>
<li class="circle">etomica.space.<a href="etomica/space/BenchVector3D.html" title="class in etomica.space"><span class="typeNameLink">BenchVector3D</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/Bernoulli.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">Bernoulli</span></a></li>
<li class="circle">etomica.util.numerical.<a href="etomica/util/numerical/BesselFunction.html" title="class in etomica.util.numerical"><span class="typeNameLink">BesselFunction</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/BetaPhaseLatticeParameter.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">BetaPhaseLatticeParameter</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/BetaPhaseLatticeParameterLS.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">BetaPhaseLatticeParameterLS</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/BetaPhaseLatticeParameterNA.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">BetaPhaseLatticeParameterNA</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/BiasVolume.html" title="class in etomica.association"><span class="typeNameLink">BiasVolume</span></a> (implements etomica.association.<a href="etomica/association/AssociationDefinition.html" title="interface in etomica.association">AssociationDefinition</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.association.<a href="etomica/association/BiasVolumeCube.html" title="class in etomica.association"><span class="typeNameLink">BiasVolumeCube</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/BiasVolumeSphere.html" title="class in etomica.association"><span class="typeNameLink">BiasVolumeSphere</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/BiasVolumeSphereOriented.html" title="class in etomica.association"><span class="typeNameLink">BiasVolumeSphereOriented</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/BiasVolumeSphereOrientedDoubleSites.html" title="class in etomica.association"><span class="typeNameLink">BiasVolumeSphereOrientedDoubleSites</span></a></li>
</ul>
</li>
<li class="circle">etomica.association.<a href="etomica/association/BiasVolume2SiteAceticAcid.html" title="class in etomica.association"><span class="typeNameLink">BiasVolume2SiteAceticAcid</span></a> (implements etomica.association.<a href="etomica/association/AssociationDefinitionMolecule.html" title="interface in etomica.association">AssociationDefinitionMolecule</a>)</li>
<li class="circle">etomica.association.<a href="etomica/association/BiasVolumeMolecule.html" title="class in etomica.association"><span class="typeNameLink">BiasVolumeMolecule</span></a> (implements etomica.association.<a href="etomica/association/AssociationDefinitionMolecule.html" title="interface in etomica.association">AssociationDefinitionMolecule</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.association.<a href="etomica/association/BiasVolumeAceticAcid.html" title="class in etomica.association"><span class="typeNameLink">BiasVolumeAceticAcid</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/BiComponentSubst.html" title="class in etomica.graph.operations"><span class="typeNameLink">BiComponentSubst</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/BiComponentSubst.BiComponentSubstParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">BiComponentSubst.BiComponentSubstParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/BigComplex.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">BigComplex</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/BigDecimalMath.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">BigDecimalMath</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/BigIntegerMath.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">BigIntegerMath</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/BigIntegerPoly.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">BigIntegerPoly</span></a> (implements java.lang.Cloneable)</li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/BigSurd.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">BigSurd</span></a> (implements java.lang.Cloneable, java.lang.Comparable&lt;T&gt;)</li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/BigSurdVec.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">BigSurdVec</span></a> (implements java.lang.Comparable&lt;T&gt;)</li>
<li class="circle">etomica.veos.<a href="etomica/veos/BigValue.html" title="class in etomica.veos"><span class="typeNameLink">BigValue</span></a> (implements etomica.veos.<a href="etomica/veos/IBigValue.html" title="interface in etomica.veos">IBigValue</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/BinaryOpImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">BinaryOpImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.BinaryOp.html" title="interface in etomica.graph.engine">Parser.BinaryOp</a>)
<ul>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/BinaryOpByteImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">BinaryOpByteImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.BinaryOpByte.html" title="interface in etomica.graph.engine">Parser.BinaryOpByte</a>)</li>
</ul>
</li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/BitmapFactory.html" title="class in etomica.graph.model"><span class="typeNameLink">BitmapFactory</span></a></li>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/BitmapUtils.html" title="class in etomica.graph.traversal"><span class="typeNameLink">BitmapUtils</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/BitSet.html" title="class in org.jmol.util"><span class="typeNameLink">BitSet</span></a> (implements java.lang.Cloneable)</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/BitSetUtil.html" title="class in org.jmol.util"><span class="typeNameLink">BitSetUtil</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/BnFlexibleContributionTraPPEUAMethanol.html" title="class in etomica.virial.simulations"><span class="typeNameLink">BnFlexibleContributionTraPPEUAMethanol</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnHNCLJ.html" title="class in etomica.virial"><span class="typeNameLink">BnHNCLJ</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnHSIonic.html" title="class in etomica.virial"><span class="typeNameLink">BnHSIonic</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnIETP2Spherical.html" title="class in etomica.virial"><span class="typeNameLink">BnIETP2Spherical</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnJHBVArgon_Analytic.html" title="class in etomica.virial"><span class="typeNameLink">BnJHBVArgon_Analytic</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnPCJSDHe.html" title="class in etomica.virial"><span class="typeNameLink">BnPCJSDHe</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnPY_1QC_Helium.html" title="class in etomica.virial"><span class="typeNameLink">BnPY_1QC_Helium</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnPYCHe.html" title="class in etomica.virial"><span class="typeNameLink">BnPYCHe</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnPYHardSphere.html" title="class in etomica.virial"><span class="typeNameLink">BnPYHardSphere</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnPYLJ.html" title="class in etomica.virial"><span class="typeNameLink">BnPYLJ</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/BnSCALJ.html" title="class in etomica.virial"><span class="typeNameLink">BnSCALJ</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/BondConnectedSubstitution.html" title="class in etomica.virial.cluster"><span class="typeNameLink">BondConnectedSubstitution</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/BondConnectedSubstitution.BondConnectedSubstitutionParameters2Site.html" title="class in etomica.virial.cluster"><span class="typeNameLink">BondConnectedSubstitution.BondConnectedSubstitutionParameters2Site</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/BondConnectedSubstitution3Site.html" title="class in etomica.virial.cluster"><span class="typeNameLink">BondConnectedSubstitution3Site</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/BondConnectedSubstitution3Site.BondConnectedSubstitutionParameters3Site.html" title="class in etomica.virial.cluster"><span class="typeNameLink">BondConnectedSubstitution3Site.BondConnectedSubstitutionParameters3Site</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/BondConnectedSubstitutionNaphthalene.html" title="class in etomica.virial.cluster"><span class="typeNameLink">BondConnectedSubstitutionNaphthalene</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/BondConnectedSubstitutionNaphthalene.BondConnectedSubstitutionParameters2SiteNa.html" title="class in etomica.virial.cluster"><span class="typeNameLink">BondConnectedSubstitutionNaphthalene.BondConnectedSubstitutionParameters2SiteNa</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.space.<a href="etomica/space/Boundary.html" title="class in etomica.space"><span class="typeNameLink">Boundary</span></a>
<ul>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryDeformablePeriodic.html" title="class in etomica.space"><span class="typeNameLink">BoundaryDeformablePeriodic</span></a>
<ul>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryDeformableLattice.html" title="class in etomica.space"><span class="typeNameLink">BoundaryDeformableLattice</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/BoundaryDeformablePeriodicSwitch.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">BoundaryDeformablePeriodicSwitch</span></a></li>
</ul>
</li>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryRectangular.html" title="class in etomica.space"><span class="typeNameLink">BoundaryRectangular</span></a>
<ul>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryRectangularNonperiodic.html" title="class in etomica.space"><span class="typeNameLink">BoundaryRectangularNonperiodic</span></a>
<ul>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/BoundaryPistonCylinder.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">BoundaryPistonCylinder</span></a></li>
</ul>
</li>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryRectangularPeriodic.html" title="class in etomica.space"><span class="typeNameLink">BoundaryRectangularPeriodic</span></a>
<ul>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/BoundaryRectangularPeriodicSwitch.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">BoundaryRectangularPeriodicSwitch</span></a></li>
</ul>
</li>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryRectangularPore.html" title="class in etomica.space"><span class="typeNameLink">BoundaryRectangularPore</span></a></li>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryRectangularSlit.html" title="class in etomica.space"><span class="typeNameLink">BoundaryRectangularSlit</span></a></li>
</ul>
</li>
<li class="circle">etomica.space3d.<a href="etomica/space3d/BoundaryTruncatedOctahedron.html" title="class in etomica.space3d"><span class="typeNameLink">BoundaryTruncatedOctahedron</span></a></li>
</ul>
</li>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryEvent.html" title="class in etomica.space"><span class="typeNameLink">BoundaryEvent</span></a></li>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryEventManager.html" title="class in etomica.space"><span class="typeNameLink">BoundaryEventManager</span></a></li>
<li class="circle">etomica.box.<a href="etomica/box/Box.html" title="class in etomica.box"><span class="typeNameLink">Box</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/BoxCluster.html" title="class in etomica.virial"><span class="typeNameLink">BoxCluster</span></a></li>
</ul>
</li>
<li class="circle">etomica.action.<a href="etomica/action/BoxActionAdapter.html" title="class in etomica.action"><span class="typeNameLink">BoxActionAdapter</span></a> (implements etomica.action.<a href="etomica/action/BoxAction.html" title="interface in etomica.action">BoxAction</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.action.<a href="etomica/action/BoxDeleteMolecules.html" title="class in etomica.action"><span class="typeNameLink">BoxDeleteMolecules</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/BoxImposePbc.html" title="class in etomica.action"><span class="typeNameLink">BoxImposePbc</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/BoxInflate.html" title="class in etomica.action"><span class="typeNameLink">BoxInflate</span></a> (implements etomica.action.<a href="etomica/action/Undoable.html" title="interface in etomica.action">Undoable</a>)
<ul>
<li class="circle">etomica.action.<a href="etomica/action/BoxInflateAnisotropic.html" title="class in etomica.action"><span class="typeNameLink">BoxInflateAnisotropic</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/BoxInflateDeformable.html" title="class in etomica.action"><span class="typeNameLink">BoxInflateDeformable</span></a></li>
</ul>
</li>
<li class="circle">etomica.action.<a href="etomica/action/BoxQuench.html" title="class in etomica.action"><span class="typeNameLink">BoxQuench</span></a></li>
</ul>
</li>
<li class="circle">etomica.box.<a href="etomica/box/BoxAgentManager.html" title="class in etomica.box"><span class="typeNameLink">BoxAgentManager</span></a>&lt;E&gt; (implements etomica.simulation.<a href="etomica/simulation/SimulationListener.html" title="interface in etomica.simulation">SimulationListener</a>)</li>
<li class="circle">etomica.box.<a href="etomica/box/BoxAgentSourceAtomManager.html" title="class in etomica.box"><span class="typeNameLink">BoxAgentSourceAtomManager</span></a>&lt;E&gt; (implements etomica.box.<a href="etomica/box/BoxAgentManager.BoxAgentSource.html" title="interface in etomica.box">BoxAgentManager.BoxAgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/BoxAgentSourceCellManager.html" title="class in etomica.nbr.cell"><span class="typeNameLink">BoxAgentSourceCellManager</span></a> (implements etomica.box.<a href="etomica/box/BoxAgentManager.BoxAgentSource.html" title="interface in etomica.box">BoxAgentManager.BoxAgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/BoxAgentSourceCellManagerMolecular.html" title="class in etomica.nbr.cell.molecule"><span class="typeNameLink">BoxAgentSourceCellManagerMolecular</span></a> (implements etomica.box.<a href="etomica/box/BoxAgentManager.BoxAgentSource.html" title="interface in etomica.box">BoxAgentManager.BoxAgentSource</a>&lt;E&gt;)
<ul>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/BoxAgentSourceCellManagerListMolecular.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">BoxAgentSourceCellManagerListMolecular</span></a></li>
</ul>
</li>
<li class="circle">etomica.box.<a href="etomica/box/BoxAgentSourceMoleculeManager.html" title="class in etomica.box"><span class="typeNameLink">BoxAgentSourceMoleculeManager</span></a>&lt;E&gt; (implements etomica.box.<a href="etomica/box/BoxAgentManager.BoxAgentSource.html" title="interface in etomica.box">BoxAgentManager.BoxAgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.box.<a href="etomica/box/BoxEvent.html" title="class in etomica.box"><span class="typeNameLink">BoxEvent</span></a>
<ul>
<li class="circle">etomica.box.<a href="etomica/box/BoxAtomEvent.html" title="class in etomica.box"><span class="typeNameLink">BoxAtomEvent</span></a>
<ul>
<li class="circle">etomica.box.<a href="etomica/box/BoxAtomIndexEvent.html" title="class in etomica.box"><span class="typeNameLink">BoxAtomIndexEvent</span></a></li>
</ul>
</li>
<li class="circle">etomica.box.<a href="etomica/box/BoxIndexEvent.html" title="class in etomica.box"><span class="typeNameLink">BoxIndexEvent</span></a></li>
<li class="circle">etomica.box.<a href="etomica/box/BoxMoleculeCountEvent.html" title="class in etomica.box"><span class="typeNameLink">BoxMoleculeCountEvent</span></a></li>
<li class="circle">etomica.box.<a href="etomica/box/BoxMoleculeEvent.html" title="class in etomica.box"><span class="typeNameLink">BoxMoleculeEvent</span></a>
<ul>
<li class="circle">etomica.box.<a href="etomica/box/BoxMoleculeIndexEvent.html" title="class in etomica.box"><span class="typeNameLink">BoxMoleculeIndexEvent</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.box.<a href="etomica/box/BoxEventListenerAdapter.html" title="class in etomica.box"><span class="typeNameLink">BoxEventListenerAdapter</span></a> (implements etomica.box.<a href="etomica/box/BoxEventListener.html" title="interface in etomica.box">BoxEventListener</a>)
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.html" title="class in etomica.atom"><span class="typeNameLink">AtomLeafAgentManager</span></a>&lt;E&gt;</li>
</ul>
</li>
<li class="circle">etomica.box.<a href="etomica/box/BoxEventManager.html" title="class in etomica.box"><span class="typeNameLink">BoxEventManager</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/BoxInfo.html" title="class in org.jmol.util"><span class="typeNameLink">BoxInfo</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/BoxRandomizeMomenta.html" title="class in etomica.action"><span class="typeNameLink">BoxRandomizeMomenta</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/BoxScaleMomenta.html" title="class in etomica.action"><span class="typeNameLink">BoxScaleMomenta</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/BravaisLattice.html" title="class in etomica.lattice"><span class="typeNameLink">BravaisLattice</span></a> (implements java.io.Serializable, etomica.lattice.<a href="etomica/lattice/SpaceLattice.html" title="interface in etomica.lattice">SpaceLattice</a>)
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/BravaisLatticeCrystal.html" title="class in etomica.lattice"><span class="typeNameLink">BravaisLatticeCrystal</span></a>
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeCubicBcc.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeCubicBcc</span></a> (implements etomica.lattice.<a href="etomica/lattice/CubicLattice.html" title="interface in etomica.lattice">CubicLattice</a>)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeCubicDiamond.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeCubicDiamond</span></a> (implements etomica.lattice.<a href="etomica/lattice/CubicLattice.html" title="interface in etomica.lattice">CubicLattice</a>)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeCubicFcc.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeCubicFcc</span></a> (implements etomica.lattice.<a href="etomica/lattice/CubicLattice.html" title="interface in etomica.lattice">CubicLattice</a>)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeHcp.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeHcp</span></a></li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeHcp4.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeHcp4</span></a></li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeOrthorhombicHexagonal.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeOrthorhombicHexagonal</span></a></li>
</ul>
</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeCubicSimple.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeCubicSimple</span></a> (implements etomica.lattice.<a href="etomica/lattice/CubicLattice.html" title="interface in etomica.lattice">CubicLattice</a>)</li>
</ul>
</li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/BuilderCollectionPotential.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">BuilderCollectionPotential</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/BuildProperties.html" title="class in etomica.util"><span class="typeNameLink">BuildProperties</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/CalcAnalytical2ndDerivativeNitrogen.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">CalcAnalytical2ndDerivativeNitrogen</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/CalcFFT.html" title="class in etomica.virial"><span class="typeNameLink">CalcFFT</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/CalcGradientDifferentiable.html" title="class in etomica.math.numerical"><span class="typeNameLink">CalcGradientDifferentiable</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionMultiDimensionalDifferentiable.html" title="interface in etomica.math.function">FunctionMultiDimensionalDifferentiable</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/CalcHalfAnalyticHalfNumeric2ndDerivativeNitrogen.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">CalcHalfAnalyticHalfNumeric2ndDerivativeNitrogen</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CalcHarmonicA.html" title="class in etomica.normalmode"><span class="typeNameLink">CalcHarmonicA</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CalcJacobian.html" title="class in etomica.normalmode"><span class="typeNameLink">CalcJacobian</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/CalcNumerical2ndDerivative.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">CalcNumerical2ndDerivative</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/CalcNumerical2ndDerivativeNitrogen.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">CalcNumerical2ndDerivativeNitrogen</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/CalcVibrationalModes.html" title="class in etomica.action"><span class="typeNameLink">CalcVibrationalModes</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/CartesianIterator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">CartesianIterator</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)
<ul>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/PartitionedIterator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">PartitionedIterator</span></a>
<ul>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/IsomorphismPrefilteredPartitionedIterator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">IsomorphismPrefilteredPartitionedIterator</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/CartesianPermutator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">CartesianPermutator</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/Permutator.html" title="interface in etomica.graph.model">Permutator</a>)</li>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/Cell.html" title="class in etomica.nbr.cell"><span class="typeNameLink">Cell</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/Cell.CellFactory.html" title="class in etomica.nbr.cell"><span class="typeNameLink">Cell.CellFactory</span></a> (implements java.io.Serializable, etomica.lattice.<a href="etomica/lattice/SiteFactory.html" title="interface in etomica.lattice">SiteFactory</a>)</li>
<li class="circle">etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/CellMolecular.html" title="class in etomica.nbr.cell.molecule"><span class="typeNameLink">CellMolecular</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/CellMolecular.CellFactory.html" title="class in etomica.nbr.cell.molecule"><span class="typeNameLink">CellMolecular.CellFactory</span></a> (implements java.io.Serializable, etomica.lattice.<a href="etomica/lattice/SiteFactory.html" title="interface in etomica.lattice">SiteFactory</a>)</li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/ChainedIterator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">ChainedIterator</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)</li>
<li class="circle">etomica.chem.electrostatics.<a href="etomica/chem/electrostatics/Charge.html" title="class in etomica.chem.electrostatics"><span class="typeNameLink">Charge</span></a> (implements etomica.chem.electrostatics.<a href="etomica/chem/electrostatics/Electrostatic.html" title="interface in etomica.chem.electrostatics">Electrostatic</a>, java.io.Serializable)</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/ChargeAgentSourceTIP4PWater.html" title="class in etomica.models.water"><span class="typeNameLink">ChargeAgentSourceTIP4PWater</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.modules.crystalviewer.<a href="etomica/modules/crystalviewer/ClipPlaneEditor.html" title="class in etomica.modules.crystalviewer"><span class="typeNameLink">ClipPlaneEditor</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/ClusterAssociation.html" title="class in etomica.virial.cluster"><span class="typeNameLink">ClusterAssociation</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterBonds.html" title="class in etomica.virial"><span class="typeNameLink">ClusterBonds</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/Chain.html" title="class in etomica.virial.cluster"><span class="typeNameLink">Chain</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterBondsNonAdditive.html" title="class in etomica.virial"><span class="typeNameLink">ClusterBondsNonAdditive</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/Full.html" title="class in etomica.virial.cluster"><span class="typeNameLink">Full</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/Ring.html" title="class in etomica.virial.cluster"><span class="typeNameLink">Ring</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterChainHS.html" title="class in etomica.virial"><span class="typeNameLink">ClusterChainHS</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterChainSoft.html" title="class in etomica.virial"><span class="typeNameLink">ClusterChainSoft</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterConstant.html" title="class in etomica.virial"><span class="typeNameLink">ClusterConstant</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterCoupledFlipped.html" title="class in etomica.virial"><span class="typeNameLink">ClusterCoupledFlipped</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterCoupledAtomFlipped.html" title="class in etomica.virial"><span class="typeNameLink">ClusterCoupledAtomFlipped</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterCoupledFlippedMultivalue.html" title="class in etomica.virial"><span class="typeNameLink">ClusterCoupledFlippedMultivalue</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstractMultivalue.html" title="interface in etomica.virial">ClusterAbstractMultivalue</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterCoupledFlippedPartial.html" title="class in etomica.virial"><span class="typeNameLink">ClusterCoupledFlippedPartial</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/ClusterDiagram.html" title="class in etomica.virial.cluster"><span class="typeNameLink">ClusterDiagram</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/ClusterDiagramTree.html" title="class in etomica.virial.cluster"><span class="typeNameLink">ClusterDiagramTree</span></a> (implements etomica.virial.cluster.<a href="etomica/virial/cluster/DiagramSource.html" title="interface in etomica.virial.cluster">DiagramSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterDifference.html" title="class in etomica.virial"><span class="typeNameLink">ClusterDifference</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterExchange.html" title="class in etomica.virial"><span class="typeNameLink">ClusterExchange</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/ClusterGenerator.html" title="class in etomica.virial.cluster"><span class="typeNameLink">ClusterGenerator</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterMultiToSingle.html" title="class in etomica.virial"><span class="typeNameLink">ClusterMultiToSingle</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterMultivalueUmbrella.html" title="class in etomica.virial"><span class="typeNameLink">ClusterMultivalueUmbrella</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWeight.html" title="interface in etomica.virial">ClusterWeight</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/ClusterOperations.html" title="class in etomica.virial.cluster"><span class="typeNameLink">ClusterOperations</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSinglyConnected.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSinglyConnected</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSum.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSum</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumAssociation.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumAssociation</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumEF.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumEF</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumStickyEF.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumStickyEF</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumExternalField.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumExternalField</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumHS.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumHS</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWheatley.html" title="interface in etomica.virial">ClusterWheatley</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumIC.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumIC</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumMultibody.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumMultibody</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumMultibodyShell.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumMultibodyShell</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumShell.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumShell</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumIC.FR2.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumIC.FR2</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumNonAdditiveTrimerEnergy.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumNonAdditiveTrimerEnergy</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumPolarizable.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumPolarizable</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumPolarizableWertheimProduct.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumPolarizableWertheimProduct</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumPolarizableWertheimProduct4Pt.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumPolarizableWertheimProduct4Pt</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumPolarizableWertheimProduct4PtFinal.html" title="class in etomica.virial"><span class="typeNameLink">ClusterSumPolarizableWertheimProduct4PtFinal</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterTree.html" title="class in etomica.virial"><span class="typeNameLink">ClusterTree</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterTreeEF.html" title="class in etomica.virial"><span class="typeNameLink">ClusterTreeEF</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterTreeBonds.html" title="class in etomica.virial"><span class="typeNameLink">ClusterTreeBonds</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/ClusterTreeNode.html" title="class in etomica.virial.cluster"><span class="typeNameLink">ClusterTreeNode</span></a>
<ul>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/ClusterCollapsedTreeNode.html" title="class in etomica.virial.cluster"><span class="typeNameLink">ClusterCollapsedTreeNode</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWeightAbs.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWeightAbs</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWeight.html" title="interface in etomica.virial">ClusterWeight</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWeightSumWall.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWeightSumWall</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWeight.html" title="interface in etomica.virial">ClusterWeight</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWeightUmbrella.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWeightUmbrella</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWeight.html" title="interface in etomica.virial">ClusterWeight</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyExtendSW.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyExtendSW</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyHS.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyHS</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWheatley.html" title="interface in etomica.virial">ClusterWheatley</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterICPYC.html" title="class in etomica.virial"><span class="typeNameLink">ClusterICPYC</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterPY.html" title="class in etomica.virial"><span class="typeNameLink">ClusterPY</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyHS.AllSigs.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyHS.AllSigs</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyMultibodyDerivatives.ClusterRetrievePrimes.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyMultibodyDerivatives.ClusterRetrievePrimes</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyMultibodyDerivativesBD.ClusterRetrievePrimes.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyMultibodyDerivativesBD.ClusterRetrievePrimes</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyPartitionScreening.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyPartitionScreening</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWheatley.html" title="interface in etomica.virial">ClusterWheatley</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyPartitionScreening.FrequencyCounter.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyPartitionScreening.FrequencyCounter</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyPT.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyPT</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstractMultivalue.html" title="interface in etomica.virial">ClusterAbstractMultivalue</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyPT.ClusterRetrieveOrders.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyPT.ClusterRetrieveOrders</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyPT.ClusterRetrievePrimesBD.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyPT.ClusterRetrievePrimesBD</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoft.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoft</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyMultibody.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyMultibody</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftMix.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftMix</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyMultibodyMix.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyMultibodyMix</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftBD.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftBD</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyMultibodyBD.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyMultibodyBD</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftMixBD.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftMixBD</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftDerivatives.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftDerivatives</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>, etomica.virial.<a href="etomica/virial/ClusterAbstractMultivalue.html" title="interface in etomica.virial">ClusterAbstractMultivalue</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyMultibodyDerivatives.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyMultibodyDerivatives</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstractMultivalue.html" title="interface in etomica.virial">ClusterAbstractMultivalue</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftDerivativesMix.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftDerivativesMix</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftDerivatives.ClusterRetrievePrimes.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftDerivatives.ClusterRetrievePrimes</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftDerivatives.ClusterRetrievePrimesBD.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftDerivatives.ClusterRetrievePrimesBD</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftDerivativesBD.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftDerivativesBD</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>, etomica.virial.<a href="etomica/virial/ClusterAbstractMultivalue.html" title="interface in etomica.virial">ClusterAbstractMultivalue</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleyMultibodyDerivativesBD.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleyMultibodyDerivativesBD</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstractMultivalue.html" title="interface in etomica.virial">ClusterAbstractMultivalue</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftDerivativesMixBD.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftDerivativesMixBD</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatleySoftDerivativesBD.ClusterRetrievePrimes.html" title="class in etomica.virial"><span class="typeNameLink">ClusterWheatleySoftDerivativesBD.ClusterRetrievePrimes</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial">ClusterAbstract</a>)</li>
<li class="circle">etomica.graph.model.impl.<a href="etomica/graph/model/impl/CoefficientImpl.html" title="class in etomica.graph.model.impl"><span class="typeNameLink">CoefficientImpl</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/Coefficient.html" title="interface in etomica.graph.model">Coefficient</a>)</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Colix.html" title="class in org.jmol.util"><span class="typeNameLink">Colix</span></a></li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/CollectionPotentialAtomicLike.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">CollectionPotentialAtomicLike</span></a> (implements etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ICollectionPotential.html" title="interface in etomica.virial.GUI.components">ICollectionPotential</a>)</li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/CollectionPotentialAtomicUnlike.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">CollectionPotentialAtomicUnlike</span></a> (implements etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ICollectionPotential.html" title="interface in etomica.virial.GUI.components">ICollectionPotential</a>)</li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/CollectionPotentialMolecularLike.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">CollectionPotentialMolecularLike</span></a> (implements etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ICollectionPotential.html" title="interface in etomica.virial.GUI.components">ICollectionPotential</a>)</li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/CollectionPotentialMolecularUnlike.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">CollectionPotentialMolecularUnlike</span></a> (implements etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ICollectionPotential.html" title="interface in etomica.virial.GUI.components">ICollectionPotential</a>)</li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/ColloidGraphic.GraftAction.html" title="class in etomica.modules.colloid"><span class="typeNameLink">ColloidGraphic.GraftAction</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/ColloidGraphic.WallRangeModifier.html" title="class in etomica.modules.colloid"><span class="typeNameLink">ColloidGraphic.WallRangeModifier</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/ColloidSim.CriterionNone.html" title="class in etomica.modules.colloid"><span class="typeNameLink">ColloidSim.CriterionNone</span></a> (implements etomica.nbr.<a href="etomica/nbr/NeighborCriterion.html" title="interface in etomica.nbr">NeighborCriterion</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorScheme.html" title="class in etomica.graphics"><span class="typeNameLink">ColorScheme</span></a>
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorScheme.Simple.html" title="class in etomica.graphics"><span class="typeNameLink">ColorScheme.Simple</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeByType.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeByType</span></a>
<ul>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/ColorSchemeRadical.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">ColorSchemeRadical</span></a></li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/ColorSchemeRadical.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">ColorSchemeRadical</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.graphics.<a href="etomica/graphics/ColorSchemeCollective.html" title="interface in etomica.graphics">ColorSchemeCollective</a>)</li>
</ul>
</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeCell.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeCell</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/ColorSchemeCluster.html" title="class in etomica.modules.glass"><span class="typeNameLink">ColorSchemeCluster</span></a> (implements etomica.graphics.<a href="etomica/graphics/ColorSchemeCollective.html" title="interface in etomica.graphics">ColorSchemeCollective</a>)</li>
<li class="circle">etomica.modules.nucleation.<a href="etomica/modules/nucleation/ColorSchemeCluster.html" title="class in etomica.modules.nucleation"><span class="typeNameLink">ColorSchemeCluster</span></a> (implements etomica.graphics.<a href="etomica/graphics/ColorSchemeCollective.html" title="interface in etomica.graphics">ColorSchemeCollective</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeCollectiveAgent.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeCollectiveAgent</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.graphics.<a href="etomica/graphics/ColorSchemeCollective.html" title="interface in etomica.graphics">ColorSchemeCollective</a>)
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeCoordination.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeCoordination</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeNeighbor.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeNeighbor</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeNeighborCell.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeNeighborCell</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeOverlap.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeOverlap</span></a></li>
<li class="circle">etomica.normalmode.nptdemo.<a href="etomica/normalmode/nptdemo/ColorSchemeScaledOverlap.html" title="class in etomica.normalmode.nptdemo"><span class="typeNameLink">ColorSchemeScaledOverlap</span></a></li>
</ul>
</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeColliders.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeColliders</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/ColorSchemeDeviation.html" title="class in etomica.modules.glass"><span class="typeNameLink">ColorSchemeDeviation</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/ColorSchemeDirection.html" title="class in etomica.modules.glass"><span class="typeNameLink">ColorSchemeDirection</span></a></li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/ColorSchemeDropletSurface.html" title="class in etomica.modules.droplet"><span class="typeNameLink">ColorSchemeDropletSurface</span></a> (implements etomica.graphics.<a href="etomica/graphics/ColorSchemeCollective.html" title="interface in etomica.graphics">ColorSchemeCollective</a>)</li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/ColorSchemeLiquidVapor.html" title="class in etomica.modules.droplet"><span class="typeNameLink">ColorSchemeLiquidVapor</span></a> (implements etomica.graphics.<a href="etomica/graphics/ColorSchemeCollective.html" title="interface in etomica.graphics">ColorSchemeCollective</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeNull.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeNull</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/ColorSchemePaired.html" title="class in etomica.cavity"><span class="typeNameLink">ColorSchemePaired</span></a></li>
<li class="circle">etomica.modules.crystalviewer.<a href="etomica/modules/crystalviewer/ColorSchemePlane.html" title="class in etomica.modules.crystalviewer"><span class="typeNameLink">ColorSchemePlane</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeRandom.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeRandom</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeRandomByMolecule.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeRandomByMolecule</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.association.<a href="etomica/association/ColorSchemeSmer.html" title="class in etomica.association"><span class="typeNameLink">ColorSchemeSmer</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.association.<a href="etomica/association/ColorSchemeSmerByLength.html" title="class in etomica.association"><span class="typeNameLink">ColorSchemeSmerByLength</span></a></li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/ColorSchemeStepWise.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">ColorSchemeStepWise</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeTemperature.html" title="class in etomica.graphics"><span class="typeNameLink">ColorSchemeTemperature</span></a></li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/ConfigFromFileLAMMPS.ColorSchemeDeviation.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">ConfigFromFileLAMMPS.ColorSchemeDeviation</span></a> (implements etomica.graphics.<a href="etomica/graphics/ColorSchemeCollective.html" title="interface in etomica.graphics">ColorSchemeCollective</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HSNPT.ColorSchemeDisplacement.html" title="class in etomica.normalmode"><span class="typeNameLink">HSNPT.ColorSchemeDisplacement</span></a></li>
<li class="circle">etomica.modules.materialfracture.<a href="etomica/modules/materialfracture/StrainColorScheme.html" title="class in etomica.modules.materialfracture"><span class="typeNameLink">StrainColorScheme</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/ColorSchemeRadical.LengthAgent.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">ColorSchemeRadical.LengthAgent</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/ColorSchemeSmer.ColorAgent.html" title="class in etomica.association"><span class="typeNameLink">ColorSchemeSmer.ColorAgent</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/ColorUtil.html" title="class in org.jmol.util"><span class="typeNameLink">ColorUtil</span></a></li>
<li class="circle">etomica.math.discrete.<a href="etomica/math/discrete/CombinationIterator.html" title="class in etomica.math.discrete"><span class="typeNameLink">CombinationIterator</span></a> (implements etomica.lattice.<a href="etomica/lattice/IndexIterator.html" title="interface in etomica.lattice">IndexIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/CombineABSite.html" title="class in etomica.graph.operations"><span class="typeNameLink">CombineABSite</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/CombineABSite.CombineABSiteParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">CombineABSite.CombineABSiteParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/CommandImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">CommandImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.Command.html" title="interface in etomica.graph.engine">Parser.Command</a>)
<ul>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/CommandPropertyValueImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">CommandPropertyValueImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.CommandPropertyValue.html" title="interface in etomica.graph.engine">Parser.CommandPropertyValue</a>)</li>
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<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/CommandVariableImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">CommandVariableImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.CommandVariable.html" title="interface in etomica.graph.engine">Parser.CommandVariable</a>)</li>
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<li class="circle">javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
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<li class="circle">etomica.virial.GUI.containers.<a href="etomica/virial/GUI/containers/AppFrameMixtureBuilder.html" title="class in etomica.virial.GUI.containers"><span class="typeNameLink">AppFrameMixtureBuilder</span></a></li>
<li class="circle">etomica.graph.viewer.<a href="etomica/graph/viewer/ClusterViewer.html" title="class in etomica.graph.viewer"><span class="typeNameLink">ClusterViewer</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Viewer.html" title="interface in etomica.graph.engine">Viewer</a>)</li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Launcher.ConsoleWindow.html" title="class in etomica.graph.engine"><span class="typeNameLink">Launcher.ConsoleWindow</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/ConsoleContainer.html" title="interface in etomica.graph.engine">ConsoleContainer</a>)</li>
<li class="circle">etomica.virial.GUI.views.<a href="etomica/virial/GUI/views/ViewAlertMsgBox.html" title="class in etomica.virial.GUI.views"><span class="typeNameLink">ViewAlertMsgBox</span></a></li>
<li class="circle">etomica.virial.GUI.views.<a href="etomica/virial/GUI/views/ViewAlertMsgBoxSpeciesRemoval.html" title="class in etomica.virial.GUI.views"><span class="typeNameLink">ViewAlertMsgBoxSpeciesRemoval</span></a></li>
<li class="circle">etomica.virial.GUI.views.<a href="etomica/virial/GUI/views/ViewAlkaneLengthSelection.html" title="class in etomica.virial.GUI.views"><span class="typeNameLink">ViewAlkaneLengthSelection</span></a></li>
<li class="circle">etomica.virial.GUI.views.<a href="etomica/virial/GUI/views/ViewSimEnvironmentSelection.html" title="class in etomica.virial.GUI.views"><span class="typeNameLink">ViewSimEnvironmentSelection</span></a></li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.util.<a href="etomica/util/Grabber.ImagePanel.html" title="class in etomica.util"><span class="typeNameLink">Grabber.ImagePanel</span></a></li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/Plot.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">Plot</span></a>
<ul>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/ClusterPanel.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">ClusterPanel</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.meta.<a href="etomica/meta/ComponentIndex.html" title="class in etomica.meta"><span class="typeNameLink">ComponentIndex</span></a>&lt;T&gt;
<ul>
<li class="circle">etomica.meta.<a href="etomica/meta/DataSourceIndex.html" title="class in etomica.meta"><span class="typeNameLink">DataSourceIndex</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/ComponentSubst.html" title="class in etomica.graph.operations"><span class="typeNameLink">ComponentSubst</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/ComponentSubst.ComponentSubstParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">ComponentSubst.ComponentSubstParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.units.<a href="etomica/units/CompoundUnit.html" title="class in etomica.units"><span class="typeNameLink">CompoundUnit</span></a> (implements etomica.units.<a href="etomica/units/Unit.html" title="interface in etomica.units">Unit</a>)
<ul>
<li class="circle">etomica.units.<a href="etomica/units/UnitRatio.html" title="class in etomica.units"><span class="typeNameLink">UnitRatio</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/CondenseExchange.html" title="class in etomica.virial.cluster"><span class="typeNameLink">CondenseExchange</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/CondenseExchange.CondenseExchangeParameters.html" title="class in etomica.virial.cluster"><span class="typeNameLink">CondenseExchange.CondenseExchangeParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/ConfigFromFileLAMMPS.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">ConfigFromFileLAMMPS</span></a></li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/ConfigFromFileLAMMPS.AtomTestDeviation.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">ConfigFromFileLAMMPS.AtomTestDeviation</span></a> (implements etomica.atom.<a href="etomica/atom/AtomTest.html" title="interface in etomica.atom">AtomTest</a>)</li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/ConfigFromFileLAMMPS.ModifierConfiguration.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">ConfigFromFileLAMMPS.ModifierConfiguration</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">io.dropwizard.Configuration
<ul>
<li class="circle">etomica.server.<a href="etomica/server/EtomicaServerConfig.html" title="class in etomica.server"><span class="typeNameLink">EtomicaServerConfig</span></a></li>
</ul>
</li>
<li class="circle">etomica.spin.ising.<a href="etomica/spin/ising/ConfigurationAligned.html" title="class in etomica.spin.ising"><span class="typeNameLink">ConfigurationAligned</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/ConfigurationCatalysis.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">ConfigurationCatalysis</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConfigurationCluster.html" title="class in etomica.virial"><span class="typeNameLink">ConfigurationCluster</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ConfigurationClusterAceticAcid.html" title="class in etomica.virial"><span class="typeNameLink">ConfigurationClusterAceticAcid</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConfigurationClusterChain.html" title="class in etomica.virial"><span class="typeNameLink">ConfigurationClusterChain</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConfigurationClusterChainFourSites.html" title="class in etomica.virial"><span class="typeNameLink">ConfigurationClusterChainFourSites</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConfigurationClusterMove.html" title="class in etomica.virial"><span class="typeNameLink">ConfigurationClusterMove</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConfigurationClusterWertheimGCPM.html" title="class in etomica.virial"><span class="typeNameLink">ConfigurationClusterWertheimGCPM</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConfigurationClusterWertheimGCPM4Pt.html" title="class in etomica.virial"><span class="typeNameLink">ConfigurationClusterWertheimGCPM4Pt</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConfigurationClusterWertheimGCPMDirectSampling.html" title="class in etomica.virial"><span class="typeNameLink">ConfigurationClusterWertheimGCPMDirectSampling</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/ConfigurationColloid.html" title="class in etomica.modules.colloid"><span class="typeNameLink">ConfigurationColloid</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/ConfigurationDroplet.html" title="class in etomica.modules.droplet"><span class="typeNameLink">ConfigurationDroplet</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationFile.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationFile</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/ConfigurationFileTIP4P.html" title="class in etomica.models.water"><span class="typeNameLink">ConfigurationFileTIP4P</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationOrientedFile.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationOrientedFile</span></a></li>
</ul>
</li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationFileBinary.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationFileBinary</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.zeolite.<a href="etomica/zeolite/ConfigurationFileXYZ.html" title="class in etomica.zeolite"><span class="typeNameLink">ConfigurationFileXYZ</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/ConfigurationLammps.html" title="class in etomica.interfacial"><span class="typeNameLink">ConfigurationLammps</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationLattice.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationLattice</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/ConfigurationLatticeFreeRadical.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">ConfigurationLatticeFreeRadical</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationLatticeRandom.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationLatticeRandom</span></a></li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/ConfigurationLatticeTube.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">ConfigurationLatticeTube</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationLatticeWithPlane.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationLatticeWithPlane</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationZincblende.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationZincblende</span></a></li>
</ul>
</li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationLattice.MyLattice.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationLattice.MyLattice</span></a> (implements etomica.lattice.<a href="etomica/lattice/SpaceLattice.html" title="interface in etomica.lattice">SpaceLattice</a>)</li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationLatticeSimple.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationLatticeSimple</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ConfigurationMembrane.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ConfigurationMembrane</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ConfigurationMembraneWater.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ConfigurationMembraneWater</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.modules.rheology.<a href="etomica/modules/rheology/ConfigurationPolymer.html" title="class in etomica.modules.rheology"><span class="typeNameLink">ConfigurationPolymer</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationReplicate.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationReplicate</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/ConfigurationResourceFile.html" title="class in etomica.config"><span class="typeNameLink">ConfigurationResourceFile</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.config.<a href="etomica/config/Configurations.html" title="class in etomica.config"><span class="typeNameLink">Configurations</span></a></li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/ConfigurationSAM.html" title="class in etomica.modules.sam"><span class="typeNameLink">ConfigurationSAM</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.html" title="class in etomica.modules.glass"><span class="typeNameLink">ConfigurationStorage</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStoragePumper.html" title="class in etomica.modules.glass"><span class="typeNameLink">ConfigurationStoragePumper</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>)</li>
<li class="circle">etomica.server.representations.<a href="etomica/server/representations/ConfigurationUpdate.html" title="class in etomica.server.representations"><span class="typeNameLink">ConfigurationUpdate</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/ConfigurationWater108.html" title="class in etomica.rotation"><span class="typeNameLink">ConfigurationWater108</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/ConfigurationWater108TIP4P.html" title="class in etomica.rotation"><span class="typeNameLink">ConfigurationWater108TIP4P</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/ConfigurationWater256.html" title="class in etomica.rotation"><span class="typeNameLink">ConfigurationWater256</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/ConfigurationWater3.html" title="class in etomica.rotation"><span class="typeNameLink">ConfigurationWater3</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/ConfigurationWater3_3P.html" title="class in etomica.rotation"><span class="typeNameLink">ConfigurationWater3_3P</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.server.resources.<a href="etomica/server/resources/ConfigurationWebsocket.html" title="class in etomica.server.resources"><span class="typeNameLink">ConfigurationWebsocket</span></a></li>
<li class="circle">etomica.server.resources.<a href="etomica/server/resources/ConfigurationWebsocket.ConfigurationUpdateEncoder.html" title="class in etomica.server.resources"><span class="typeNameLink">ConfigurationWebsocket.ConfigurationUpdateEncoder</span></a> (implements javax.websocket.Encoder.TextStream&lt;T&gt;)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/Conformation7SiteRigidSF6.html" title="class in etomica.virial"><span class="typeNameLink">Conformation7SiteRigidSF6</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.models.OPLS.<a href="etomica/models/OPLS/ConformationAceticAcid.html" title="class in etomica.models.OPLS"><span class="typeNameLink">ConformationAceticAcid</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)</li>
<li class="circle">etomica.AlkaneEH.<a href="etomica/AlkaneEH/ConformationAlkaneEH.html" title="class in etomica.AlkaneEH"><span class="typeNameLink">ConformationAlkaneEH</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConformationAnthracene3site.html" title="class in etomica.virial"><span class="typeNameLink">ConformationAnthracene3site</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConformationAnthraceneTraPPE.html" title="class in etomica.virial"><span class="typeNameLink">ConformationAnthraceneTraPPE</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.config.<a href="etomica/config/ConformationChain.html" title="class in etomica.config"><span class="typeNameLink">ConformationChain</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.config.<a href="etomica/config/ConformationChain2D.html" title="class in etomica.config"><span class="typeNameLink">ConformationChain2D</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/ConformationChain3D.html" title="class in etomica.config"><span class="typeNameLink">ConformationChain3D</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/ConformationChainZigZag.html" title="class in etomica.config"><span class="typeNameLink">ConformationChainZigZag</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/ConformationChainZigZag2.html" title="class in etomica.config"><span class="typeNameLink">ConformationChainZigZag2</span></a></li>
</ul>
</li>
<li class="circle">etomica.config.<a href="etomica/config/ConformationChainLinear.html" title="class in etomica.config"><span class="typeNameLink">ConformationChainLinear</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/ConformationCO2.html" title="class in etomica.models.co2"><span class="typeNameLink">ConformationCO2</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/ConformationEthanol.html" title="class in etomica.models.rowley"><span class="typeNameLink">ConformationEthanol</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)</li>
<li class="circle">etomica.config.<a href="etomica/config/ConformationGeneric.html" title="class in etomica.config"><span class="typeNameLink">ConformationGeneric</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/ConformationHSDimer.html" title="class in etomica.normalmode"><span class="typeNameLink">ConformationHSDimer</span></a> (implements etomica.config.<a href="etomica/config/IConformationOriented.html" title="interface in etomica.config">IConformationOriented</a>, java.io.Serializable)</li>
<li class="circle">etomica.config.<a href="etomica/config/ConformationLinear.html" title="class in etomica.config"><span class="typeNameLink">ConformationLinear</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.AlkaneEH.<a href="etomica/AlkaneEH/ConformationMethane.html" title="class in etomica.AlkaneEH"><span class="typeNameLink">ConformationMethane</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)</li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/ConformationMethanol.html" title="class in etomica.models.rowley"><span class="typeNameLink">ConformationMethanol</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConformationNaphthaleneTraPPE.html" title="class in etomica.virial"><span class="typeNameLink">ConformationNaphthaleneTraPPE</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/ConformationNitrogen.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">ConformationNitrogen</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/ConformationNitrogenShellModel.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">ConformationNitrogenShellModel</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConformationPh3site.html" title="class in etomica.virial"><span class="typeNameLink">ConformationPh3site</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ConformationPhenanthreneTraPPE.html" title="class in etomica.virial"><span class="typeNameLink">ConformationPhenanthreneTraPPE</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/ConformationStarPolymerGraft.html" title="class in etomica.starpolymer"><span class="typeNameLink">ConformationStarPolymerGraft</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)</li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/ConformationTube.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">ConformationTube</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)</li>
<li class="circle">etomica.config.<a href="etomica/config/ConformationWater.html" title="class in etomica.config"><span class="typeNameLink">ConformationWater</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/ConformationWater3P.html" title="class in etomica.models.water"><span class="typeNameLink">ConformationWater3P</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>)
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/OrientationCalcWater3P.html" title="class in etomica.models.water"><span class="typeNameLink">OrientationCalcWater3P</span></a> (implements etomica.molecule.<a href="etomica/molecule/OrientationCalc.html" title="interface in etomica.molecule">OrientationCalc</a>, etomica.molecule.<a href="etomica/molecule/OrientationCalcQuaternion.html" title="interface in etomica.molecule">OrientationCalcQuaternion</a>, java.io.Serializable)</li>
</ul>
</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/ConformationWaterGCPM.html" title="class in etomica.models.water"><span class="typeNameLink">ConformationWaterGCPM</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/ConformationWaterGCPMCOM.html" title="class in etomica.models.water"><span class="typeNameLink">ConformationWaterGCPMCOM</span></a></li>
</ul>
</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/ConformationWaterTIP4P.html" title="class in etomica.models.water"><span class="typeNameLink">ConformationWaterTIP4P</span></a> (implements etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config">IConformation</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/OrientationCalcWater4P.html" title="class in etomica.models.water"><span class="typeNameLink">OrientationCalcWater4P</span></a> (implements etomica.molecule.<a href="etomica/molecule/OrientationCalc.html" title="interface in etomica.molecule">OrientationCalc</a>, etomica.molecule.<a href="etomica/molecule/OrientationCalcQuaternion.html" title="interface in etomica.molecule">OrientationCalcQuaternion</a>, java.io.Serializable)</li>
</ul>
</li>
<li class="circle">etomica.util.<a href="etomica/util/Constants.html" title="class in etomica.util"><span class="typeNameLink">Constants</span></a></li>
<li class="circle">etomica.server.core.construction.<a href="etomica/server/core/construction/Construction.html" title="class in etomica.server.core.construction"><span class="typeNameLink">Construction</span></a></li>
<li class="circle">etomica.server.representations.<a href="etomica/server/representations/ConstructionInfo.html" title="class in etomica.server.representations"><span class="typeNameLink">ConstructionInfo</span></a></li>
<li class="circle">etomica.server.representations.<a href="etomica/server/representations/ConstructionParams.html" title="class in etomica.server.representations"><span class="typeNameLink">ConstructionParams</span></a></li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/ConstructorImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">ConstructorImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.Constructor.html" title="interface in etomica.graph.engine">Parser.Constructor</a>)
<ul>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/ConstructorColoredImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">ConstructorColoredImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.ConstructorColored.html" title="interface in etomica.graph.engine">Parser.ConstructorColored</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/ConstructorMonoImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">ConstructorMonoImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.ConstructorMono.html" title="interface in etomica.graph.engine">Parser.ConstructorMono</a>)</li>
</ul>
</li>
<li class="circle">etomica.action.controller.<a href="etomica/action/controller/Controller.html" title="class in etomica.action.controller"><span class="typeNameLink">Controller</span></a></li>
<li class="circle">etomica.action.controller.<a href="etomica/action/controller/Controller.ActivityHandle.html" title="class in etomica.action.controller"><span class="typeNameLink">Controller.ActivityHandle</span></a>&lt;A&gt;</li>
<li class="circle">etomica.action.controller.<a href="etomica/action/controller/Controller.ControllerHandle.html" title="class in etomica.action.controller"><span class="typeNameLink">Controller.ControllerHandle</span></a></li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/ControllerAlertMsgBox.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">ControllerAlertMsgBox</span></a></li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/ControllerAlertMsgBox.CloseWindowButtonListener.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">ControllerAlertMsgBox.CloseWindowButtonListener</span></a> (implements java.awt.event.ActionListener)</li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/ControllerAlertMsgBoxSpeciesRemoval.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">ControllerAlertMsgBoxSpeciesRemoval</span></a></li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/ControllerAlertMsgBoxSpeciesRemoval.NoDoNotRemoveSpeciesButtonListener.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">ControllerAlertMsgBoxSpeciesRemoval.NoDoNotRemoveSpeciesButtonListener</span></a> (implements java.awt.event.ActionListener)</li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/ControllerAlertMsgBoxSpeciesRemoval.YesRemoveSpeciesButtonListener.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">ControllerAlertMsgBoxSpeciesRemoval.YesRemoveSpeciesButtonListener</span></a> (implements java.awt.event.ActionListener)</li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/ControllerAlkaneLengthSelection.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">ControllerAlkaneLengthSelection</span></a></li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/ControllerSimEnvironmentSelection.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">ControllerSimEnvironmentSelection</span></a></li>
<li class="circle">etomica.virial.GUI.controllers.<a href="etomica/virial/GUI/controllers/ControllerSpeciesSelection.html" title="class in etomica.virial.GUI.controllers"><span class="typeNameLink">ControllerSpeciesSelection</span></a></li>
<li class="circle">etomica.server.resources.<a href="etomica/server/resources/ControlResource.html" title="class in etomica.server.resources"><span class="typeNameLink">ControlResource</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Conv.html" title="class in etomica.graph.operations"><span class="typeNameLink">Conv</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/ConvParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">ConvParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.math.geometry.coordinate.<a href="etomica/math/geometry/coordinate/CoordinateConverter.html" title="class in etomica.math.geometry.coordinate"><span class="typeNameLink">CoordinateConverter</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinition.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinition</span></a>
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinitionLeaf.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinitionLeaf</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinitionLeafSuperBox.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinitionLeafSuperBox</span></a></li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinitionMolecule.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinitionMolecule</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinitionHSDimer.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinitionHSDimer</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/CoordinateDefinitionNitrogen.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">CoordinateDefinitionNitrogen</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/CoordinateDefinitionNitrogenSuperBox.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">CoordinateDefinitionNitrogenSuperBox</span></a> (implements java.io.Serializable)</li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinitionMoleculeVolumeFluctuation.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinitionMoleculeVolumeFluctuation</span></a> (implements java.io.Serializable)</li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinition.BasisCell.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinition.BasisCell</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinition.SiteSource.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinition.SiteSource</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinitionMolecule.MoleculeSiteSource.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinitionMolecule.MoleculeSiteSource</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, java.io.Serializable)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinitionMoleculeVolumeFluctuation.MoleculeSiteSource.html" title="class in etomica.normalmode"><span class="typeNameLink">CoordinateDefinitionMoleculeVolumeFluctuation.MoleculeSiteSource</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, java.io.Serializable)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/CoordinateDefinitionNitrogen.OrientationAgentSource.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">CoordinateDefinitionNitrogen.OrientationAgentSource</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, java.io.Serializable)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/CoordinateDefinitionNitrogenSuperBox.OrientationAgentSource.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">CoordinateDefinitionNitrogenSuperBox.OrientationAgentSource</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/CoordinatePairLeafSet.html" title="class in etomica.virial"><span class="typeNameLink">CoordinatePairLeafSet</span></a> (implements etomica.virial.<a href="etomica/virial/CoordinatePairSet.html" title="interface in etomica.virial">CoordinatePairSet</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/CoordinatePairMoleculeSet.html" title="class in etomica.virial"><span class="typeNameLink">CoordinatePairMoleculeSet</span></a> (implements etomica.virial.<a href="etomica/virial/CoordinatePairSet.html" title="interface in etomica.virial">CoordinatePairSet</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/CorrelationSelf2.html" title="class in etomica.modules.glass"><span class="typeNameLink">CorrelationSelf2</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/CorrelationSelf2.MeterCorrelationSelf2.html" title="class in etomica.modules.glass"><span class="typeNameLink">CorrelationSelf2.MeterCorrelationSelf2</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/CriterionAdapter.html" title="class in etomica.nbr"><span class="typeNameLink">CriterionAdapter</span></a> (implements etomica.nbr.<a href="etomica/nbr/NeighborCriterion.html" title="interface in etomica.nbr">NeighborCriterion</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.nbr.<a href="etomica/nbr/CriterionBondedSimple.html" title="class in etomica.nbr"><span class="typeNameLink">CriterionBondedSimple</span></a></li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/CriterionInterMolecular.html" title="class in etomica.nbr"><span class="typeNameLink">CriterionInterMolecular</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.molecule.<a href="etomica/nbr/molecule/CriterionAdapterMolecular.html" title="class in etomica.nbr.molecule"><span class="typeNameLink">CriterionAdapterMolecular</span></a> (implements etomica.nbr.molecule.<a href="etomica/nbr/molecule/NeighborCriterionMolecular.html" title="interface in etomica.nbr.molecule">NeighborCriterionMolecular</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.nbr.molecule.<a href="etomica/nbr/molecule/CriterionSpecies.html" title="class in etomica.nbr.molecule"><span class="typeNameLink">CriterionSpecies</span></a></li>
<li class="circle">etomica.nbr.molecule.<a href="etomica/nbr/molecule/CriterionSpeciesPair.html" title="class in etomica.nbr.molecule"><span class="typeNameLink">CriterionSpeciesPair</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/CriterionAll.html" title="class in etomica.nbr"><span class="typeNameLink">CriterionAll</span></a> (implements etomica.nbr.<a href="etomica/nbr/NeighborCriterion.html" title="interface in etomica.nbr">NeighborCriterion</a>)</li>
<li class="circle">etomica.nbr.molecule.<a href="etomica/nbr/molecule/CriterionAllMolecular.html" title="class in etomica.nbr.molecule"><span class="typeNameLink">CriterionAllMolecular</span></a> (implements etomica.nbr.molecule.<a href="etomica/nbr/molecule/NeighborCriterionMolecular.html" title="interface in etomica.nbr.molecule">NeighborCriterionMolecular</a>, java.io.Serializable)</li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/CriterionNone.html" title="class in etomica.nbr"><span class="typeNameLink">CriterionNone</span></a> (implements etomica.nbr.<a href="etomica/nbr/NeighborCriterion.html" title="interface in etomica.nbr">NeighborCriterion</a>)</li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/CriterionPositionWall.html" title="class in etomica.nbr"><span class="typeNameLink">CriterionPositionWall</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.nbr.<a href="etomica/nbr/NeighborCriterion.html" title="interface in etomica.nbr">NeighborCriterion</a>)</li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/CriterionPositionWall.DoubleWrapper.html" title="class in etomica.nbr"><span class="typeNameLink">CriterionPositionWall.DoubleWrapper</span></a></li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/CriterionSimple.html" title="class in etomica.nbr"><span class="typeNameLink">CriterionSimple</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.nbr.<a href="etomica/nbr/NeighborCriterion.html" title="interface in etomica.nbr">NeighborCriterion</a>)</li>
<li class="circle">etomica.nbr.molecule.<a href="etomica/nbr/molecule/CriterionSimpleMolecular.html" title="class in etomica.nbr.molecule"><span class="typeNameLink">CriterionSimpleMolecular</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, etomica.nbr.molecule.<a href="etomica/nbr/molecule/NeighborCriterionMolecular.html" title="interface in etomica.nbr.molecule">NeighborCriterionMolecular</a>)</li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/CriterionTether3.html" title="class in etomica.modules.sam"><span class="typeNameLink">CriterionTether3</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, etomica.nbr.<a href="etomica/nbr/NeighborCriterion.html" title="interface in etomica.nbr">NeighborCriterion</a>)</li>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/CVisitor.html" title="class in etomica.graph.traversal"><span class="typeNameLink">CVisitor</span></a> (implements etomica.graph.traversal.<a href="etomica/graph/traversal/TraversalVisitor.html" title="interface in etomica.graph.traversal">TraversalVisitor</a>)</li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/DataAccPusher.html" title="class in etomica.modules.statistics"><span class="typeNameLink">DataAccPusher</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)
<ul>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/DataAccCorrectedPusher.html" title="class in etomica.modules.statistics"><span class="typeNameLink">DataAccCorrectedPusher</span></a></li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/DataAccDiffCorrectedPusher.html" title="class in etomica.modules.statistics"><span class="typeNameLink">DataAccDiffCorrectedPusher</span></a></li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/DataAccDifficultyPusher.html" title="class in etomica.modules.statistics"><span class="typeNameLink">DataAccDifficultyPusher</span></a></li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/DataAccSamplesPusher.html" title="class in etomica.modules.statistics"><span class="typeNameLink">DataAccSamplesPusher</span></a></li>
</ul>
</li>
<li class="circle">etomica.server.representations.<a href="etomica/server/representations/DataAndInfo.html" title="class in etomica.server.representations"><span class="typeNameLink">DataAndInfo</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataArrayWriter.html" title="class in etomica.data"><span class="typeNameLink">DataArrayWriter</span></a> (implements etomica.data.<a href="etomica/data/DataLogger.DataWriter.html" title="interface in etomica.data">DataLogger.DataWriter</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataClusterer.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataClusterer</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataClusterer.PressureSink.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataClusterer.PressureSink</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataClusterReader.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataClusterReader</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataClusterWriter.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataClusterWriter</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataClusterWriter.PressureSink.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataClusterWriter.PressureSink</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/DataCollector.html" title="class in etomica.modules.statistics"><span class="typeNameLink">DataCollector</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.zeolite.<a href="etomica/zeolite/DataCutter.html" title="class in etomica.zeolite"><span class="typeNameLink">DataCutter</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataDistributer.html" title="class in etomica.data"><span class="typeNameLink">DataDistributer</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDouble.html" title="class in etomica.data.types"><span class="typeNameLink">DataDouble</span></a> (implements etomica.data.<a href="etomica/data/IData.html" title="interface in etomica.data">IData</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDoubleArray.html" title="class in etomica.data.types"><span class="typeNameLink">DataDoubleArray</span></a> (implements etomica.data.<a href="etomica/data/IData.html" title="interface in etomica.data">IData</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataFunction.html" title="class in etomica.data.types"><span class="typeNameLink">DataFunction</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDoubleBDArray.html" title="class in etomica.data.types"><span class="typeNameLink">DataDoubleBDArray</span></a> (implements etomica.data.<a href="etomica/data/IData.html" title="interface in etomica.data">IData</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataDump.html" title="class in etomica.data"><span class="typeNameLink">DataDump</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataFork.html" title="class in etomica.data"><span class="typeNameLink">DataFork</span></a> (implements etomica.data.<a href="etomica/data/DataPipeForked.html" title="interface in etomica.data">DataPipeForked</a>)</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataGroup.html" title="class in etomica.data.types"><span class="typeNameLink">DataGroup</span></a> (implements etomica.data.<a href="etomica/data/IData.html" title="interface in etomica.data">IData</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataTable.html" title="class in etomica.data.types"><span class="typeNameLink">DataTable</span></a> (implements etomica.data.<a href="etomica/data/IData.html" title="interface in etomica.data">IData</a>, java.io.Serializable)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeSumCrystal.DataGroupLSC.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeSumCrystal.DataGroupLSC</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/LatticeSumCrystalMolecular.DataGroupLSC.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">LatticeSumCrystalMolecular.DataGroupLSC</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/DataGroupSplitter.html" title="class in etomica.data"><span class="typeNameLink">DataGroupSplitter</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataInfo.html" title="class in etomica.data"><span class="typeNameLink">DataInfo</span></a> (implements etomica.data.<a href="etomica/data/IDataInfo.html" title="interface in etomica.data">IDataInfo</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDouble.DataInfoDouble.html" title="class in etomica.data.types"><span class="typeNameLink">DataDouble.DataInfoDouble</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDoubleArray.DataInfoDoubleArray.html" title="class in etomica.data.types"><span class="typeNameLink">DataDoubleArray.DataInfoDoubleArray</span></a>
<ul>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataFunction.DataInfoFunction.html" title="class in etomica.data.types"><span class="typeNameLink">DataFunction.DataInfoFunction</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDoubleBDArray.DataInfoDoubleBDArray.html" title="class in etomica.data.types"><span class="typeNameLink">DataDoubleBDArray.DataInfoDoubleBDArray</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataGroup.DataInfoGroup.html" title="class in etomica.data.types"><span class="typeNameLink">DataGroup.DataInfoGroup</span></a>
<ul>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataTable.DataInfoTable.html" title="class in etomica.data.types"><span class="typeNameLink">DataTable.DataInfoTable</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataTensor.DataInfoTensor.html" title="class in etomica.data.types"><span class="typeNameLink">DataTensor.DataInfoTensor</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataVector.DataInfoVector.html" title="class in etomica.data.types"><span class="typeNameLink">DataVector.DataInfoVector</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/DataInfoFactory.html" title="class in etomica.data"><span class="typeNameLink">DataInfoFactory</span></a> (implements etomica.data.<a href="etomica/data/IDataInfoFactory.html" title="interface in etomica.data">IDataInfoFactory</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDouble.DataInfoDoubleFactory.html" title="class in etomica.data.types"><span class="typeNameLink">DataDouble.DataInfoDoubleFactory</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDoubleArray.DataInfoDoubleArrayFactory.html" title="class in etomica.data.types"><span class="typeNameLink">DataDoubleArray.DataInfoDoubleArrayFactory</span></a>
<ul>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataFunction.DataInfoFunctionFactory.html" title="class in etomica.data.types"><span class="typeNameLink">DataFunction.DataInfoFunctionFactory</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataDoubleBDArray.DataInfoDoubleBDArrayFactory.html" title="class in etomica.data.types"><span class="typeNameLink">DataDoubleBDArray.DataInfoDoubleBDArrayFactory</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataGroup.DataInfoGroupFactory.html" title="class in etomica.data.types"><span class="typeNameLink">DataGroup.DataInfoGroupFactory</span></a>
<ul>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataTable.DataInfoTableFactory.html" title="class in etomica.data.types"><span class="typeNameLink">DataTable.DataInfoTableFactory</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataTensor.DataInfoTensorFactory.html" title="class in etomica.data.types"><span class="typeNameLink">DataTensor.DataInfoTensorFactory</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataVector.DataInfoVectorFactory.html" title="class in etomica.data.types"><span class="typeNameLink">DataVector.DataInfoVectorFactory</span></a></li>
</ul>
</li>
<li class="circle">etomica.overlap.<a href="etomica/overlap/DataOverlap.html" title="class in etomica.overlap"><span class="typeNameLink">DataOverlap</span></a> (implements etomica.overlap.<a href="etomica/overlap/IntegratorOverlap.ReferenceFracSource.html" title="interface in etomica.overlap">IntegratorOverlap.ReferenceFracSource</a>)
<ul>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/DataOverlapCaching.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">DataOverlapCaching</span></a></li>
</ul>
</li>
<li class="circle">etomica.overlap.<a href="etomica/overlap/DataOverlap.DataSourceOverlapAvgCollapsing.html" title="class in etomica.overlap"><span class="typeNameLink">DataOverlap.DataSourceOverlapAvgCollapsing</span></a> (implements etomica.overlap.<a href="etomica/overlap/DataOverlap.DataSourceOverlapLogAvg.html" title="interface in etomica.overlap">DataOverlap.DataSourceOverlapLogAvg</a>)
<ul>
<li class="circle">etomica.overlap.<a href="etomica/overlap/DataOverlap.DataSourceOverlapAvgCollapsingSplit.html" title="class in etomica.overlap"><span class="typeNameLink">DataOverlap.DataSourceOverlapAvgCollapsingSplit</span></a></li>
</ul>
</li>
<li class="circle">etomica.overlap.<a href="etomica/overlap/DataOverlap.DataSourceOverlapAvgSimple.html" title="class in etomica.overlap"><span class="typeNameLink">DataOverlap.DataSourceOverlapAvgSimple</span></a> (implements etomica.overlap.<a href="etomica/overlap/DataOverlap.DataSourceOverlapAvg.html" title="interface in etomica.overlap">DataOverlap.DataSourceOverlapAvg</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataProcessor.html" title="class in etomica.data"><span class="typeNameLink">DataProcessor</span></a> (implements etomica.data.<a href="etomica/data/DataPipe.html" title="interface in etomica.data">DataPipe</a>)
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/BoltzmannProcessor.html" title="class in etomica.normalmode"><span class="typeNameLink">BoltzmannProcessor</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/CastGroupOfTablesToDataTable.html" title="class in etomica.data.types"><span class="typeNameLink">CastGroupOfTablesToDataTable</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/CastGroupToDoubleArray.html" title="class in etomica.data.types"><span class="typeNameLink">CastGroupToDoubleArray</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/CastToDouble.html" title="class in etomica.data.types"><span class="typeNameLink">CastToDouble</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/CastToDoubleArray.html" title="class in etomica.data.types"><span class="typeNameLink">CastToDoubleArray</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/CastToGroup.html" title="class in etomica.data.types"><span class="typeNameLink">CastToGroup</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/CastToTable.html" title="class in etomica.data.types"><span class="typeNameLink">CastToTable</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataGroupFilter.html" title="class in etomica.data"><span class="typeNameLink">DataGroupFilter</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataLogger.html" title="class in etomica.data"><span class="typeNameLink">DataLogger</span></a></li>
<li class="circle">etomica.modules.multiharmonic.<a href="etomica/modules/multiharmonic/DataProcessorBias.html" title="class in etomica.modules.multiharmonic"><span class="typeNameLink">DataProcessorBias</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataProcessorBoltzmannFactor.html" title="class in etomica.normalmode"><span class="typeNameLink">DataProcessorBoltzmannFactor</span></a></li>
<li class="circle">etomica.modules.multiharmonic.<a href="etomica/modules/multiharmonic/DataProcessorBounds.html" title="class in etomica.modules.multiharmonic"><span class="typeNameLink">DataProcessorBounds</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/DataProcessorCavity.html" title="class in etomica.cavity"><span class="typeNameLink">DataProcessorCavity</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataProcessorChemicalPotential.html" title="class in etomica.data"><span class="typeNameLink">DataProcessorChemicalPotential</span></a></li>
<li class="circle">etomica.eam.<a href="etomica/eam/DataProcessorCvMD.html" title="class in etomica.eam"><span class="typeNameLink">DataProcessorCvMD</span></a></li>
<li class="circle">etomica.modules.multiharmonic.<a href="etomica/modules/multiharmonic/DataProcessorDyDLnx.html" title="class in etomica.modules.multiharmonic"><span class="typeNameLink">DataProcessorDyDLnx</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/DataProcessorErrorBar.html" title="class in etomica.cavity"><span class="typeNameLink">DataProcessorErrorBar</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataProcessorForked.html" title="class in etomica.data"><span class="typeNameLink">DataProcessorForked</span></a> (implements etomica.data.<a href="etomica/data/DataPipeForked.html" title="interface in etomica.data">DataPipeForked</a>)
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataAccumulator.html" title="class in etomica.data"><span class="typeNameLink">DataAccumulator</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)
<ul>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AccumulatorAutocorrelationPTensor.html" title="class in etomica.modules.glass"><span class="typeNameLink">AccumulatorAutocorrelationPTensor</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AccumulatorAutocorrelationShearStress.html" title="class in etomica.modules.glass"><span class="typeNameLink">AccumulatorAutocorrelationShearStress</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverage.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverage</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageCollapsing.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageCollapsing</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageFixed.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageFixed</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageCovariance.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageCovariance</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorRatioAverageCovariance.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorRatioAverageCovariance</span></a>
<ul>
<li class="circle">etomica.virial.overlap.<a href="etomica/virial/overlap/AccumulatorVirialOverlapSingleAverage.html" title="class in etomica.virial.overlap"><span class="typeNameLink">AccumulatorVirialOverlapSingleAverage</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorRatioAverageCovarianceFull.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorRatioAverageCovarianceFull</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/AccumulatorMimicMu.html" title="class in etomica.modules.statistics"><span class="typeNameLink">AccumulatorMimicMu</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageFixedOutputFile.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageFixedOutputFile</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageBlockless.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageBlockless</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageBlocklessSlim.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageBlocklessSlim</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageBootstrap.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageBootstrap</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageCollapsingLog.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageCollapsingLog</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)
<ul>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageCollapsingLogAB.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorAverageCollapsingLogAB</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorCounter.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorCounter</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorHistogram.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorHistogram</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorHistory.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorHistory</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/DataProcessorBounds.html" title="class in etomica.modules.statistics"><span class="typeNameLink">DataProcessorBounds</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/DataProcessorGContactP.html" title="class in etomica.cavity"><span class="typeNameLink">DataProcessorGContactP</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/DataProcessorPContactG.html" title="class in etomica.cavity"><span class="typeNameLink">DataProcessorPContactG</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/DataProcessorWidomContact.html" title="class in etomica.cavity"><span class="typeNameLink">DataProcessorWidomContact</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/DataProcessorFunction.html" title="class in etomica.data"><span class="typeNameLink">DataProcessorFunction</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataProcessorInterfacialTension.html" title="class in etomica.data"><span class="typeNameLink">DataProcessorInterfacialTension</span></a></li>
<li class="circle">etomica.modules.interfacial.<a href="etomica/modules/interfacial/DataProcessorInterfacialTensionProfile.html" title="class in etomica.modules.interfacial"><span class="typeNameLink">DataProcessorInterfacialTensionProfile</span></a></li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/DataProcessorMu.html" title="class in etomica.modules.statistics"><span class="typeNameLink">DataProcessorMu</span></a></li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/DataProcessorReweight.html" title="class in etomica.liquidLJ"><span class="typeNameLink">DataProcessorReweight</span></a></li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/DataProcessorReweightRatio.html" title="class in etomica.liquidLJ"><span class="typeNameLink">DataProcessorReweightRatio</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataProcessorSum.html" title="class in etomica.normalmode"><span class="typeNameLink">DataProcessorSum</span></a></li>
<li class="circle">etomica.surfacetension.<a href="etomica/surfacetension/DataProcessorSurfaceTension.html" title="class in etomica.surfacetension"><span class="typeNameLink">DataProcessorSurfaceTension</span></a></li>
<li class="circle">etomica.modules.multiharmonic.<a href="etomica/modules/multiharmonic/DataProcessorVar.html" title="class in etomica.modules.multiharmonic"><span class="typeNameLink">DataProcessorVar</span></a></li>
<li class="circle">etomica.virial.overlap.<a href="etomica/virial/overlap/DataProcessorVirialOverlap.html" title="class in etomica.virial.overlap"><span class="typeNameLink">DataProcessorVirialOverlap</span></a> (implements etomica.overlap.<a href="etomica/overlap/AlphaSource.html" title="interface in etomica.overlap">AlphaSource</a>)</li>
<li class="circle">etomica.metastable.<a href="etomica/metastable/DataProcessorXY.html" title="class in etomica.metastable"><span class="typeNameLink">DataProcessorXY</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataPump.html" title="class in etomica.data"><span class="typeNameLink">DataPump</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataPumpListener.html" title="class in etomica.data"><span class="typeNameLink">DataPumpListener</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataPumpListenerSmart.html" title="class in etomica.data"><span class="typeNameLink">DataPumpListenerSmart</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/DataPumpListenerPow.html" title="class in etomica.data"><span class="typeNameLink">DataPumpListenerPow</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataPumpListenerPowStrict.html" title="class in etomica.data"><span class="typeNameLink">DataPumpListenerPowStrict</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)</li>
</ul>
</li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/DropletGraphic.DataProcessorTensorSplitter.html" title="class in etomica.modules.droplet"><span class="typeNameLink">DropletGraphic.DataProcessorTensorSplitter</span></a></li>
<li class="circle">etomica.modules.interfacial.<a href="etomica/modules/interfacial/FitTanh.html" title="class in etomica.modules.interfacial"><span class="typeNameLink">FitTanh</span></a></li>
<li class="circle">etomica.surfacetension.<a href="etomica/surfacetension/FitTanh.html" title="class in etomica.surfacetension"><span class="typeNameLink">FitTanh</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/GlassGraphic.DataProcessorTensorTrace.html" title="class in etomica.modules.glass"><span class="typeNameLink">GlassGraphic.DataProcessorTensorTrace</span></a></li>
<li class="circle">etomica.modules.interfacial.<a href="etomica/modules/interfacial/InterfacialSWGraphic.DataProcessorTensorSplitter.html" title="class in etomica.modules.interfacial"><span class="typeNameLink">InterfacialSWGraphic.DataProcessorTensorSplitter</span></a></li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/LjMd3D.DataProcessorCorrection.html" title="class in etomica.liquidLJ"><span class="typeNameLink">LjMd3D.DataProcessorCorrection</span></a></li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/LjMd3D.DataProcessorReweight.html" title="class in etomica.liquidLJ"><span class="typeNameLink">LjMd3D.DataProcessorReweight</span></a></li>
<li class="circle">etomica.modules.ljmd.<a href="etomica/modules/ljmd/LjmdGraphic.DataProcessorTensorTrace.html" title="class in etomica.modules.ljmd"><span class="typeNameLink">LjmdGraphic.DataProcessorTensorTrace</span></a></li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/MolecularWeightAvg.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">MolecularWeightAvg</span></a></li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/MolecularWeightAvg2.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">MolecularWeightAvg2</span></a></li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/MuGraphic.DataProcessorMu.html" title="class in etomica.modules.mu"><span class="typeNameLink">MuGraphic.DataProcessorMu</span></a></li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/MuGraphic.DataSinkExcludeOverlap.html" title="class in etomica.modules.mu"><span class="typeNameLink">MuGraphic.DataSinkExcludeOverlap</span></a></li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataProcessAHT.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataProcessAHT</span></a></li>
<li class="circle">etomica.modules.nucleation.<a href="etomica/modules/nucleation/NucleationGraphic.DataSinkExcludeOverlap.html" title="class in etomica.modules.nucleation"><span class="typeNameLink">NucleationGraphic.DataSinkExcludeOverlap</span></a></li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ReverseOsmosisGraphic.DataSinkExcludeOverlap.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ReverseOsmosisGraphic.DataSinkExcludeOverlap</span></a></li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ReverseOsmosisWaterGraphic.DataSinkExcludeOverlap.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ReverseOsmosisWaterGraphic.DataSinkExcludeOverlap</span></a></li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/SamGraphic.DataPipeStressStrain.html" title="class in etomica.modules.sam"><span class="typeNameLink">SamGraphic.DataPipeStressStrain</span></a></li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/StatisticsMCGraphic.DataProcessorUndo.html" title="class in etomica.modules.statistics"><span class="typeNameLink">StatisticsMCGraphic.DataProcessorUndo</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.surfacetension.<a href="etomica/surfacetension/SurfaceTensionMapped.html" title="class in etomica.surfacetension"><span class="typeNameLink">SurfaceTensionMapped</span></a></li>
<li class="circle">etomica.modules.swmd.<a href="etomica/modules/swmd/SwmdGraphic.DataSinkExcludeOverlap.html" title="class in etomica.modules.swmd"><span class="typeNameLink">SwmdGraphic.DataSinkExcludeOverlap</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialPolyhedra.DataProcessorR2.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialPolyhedra.DataProcessorR2</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialPolyhedra2.DataProcessorR2.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialPolyhedra2.DataProcessorR2</span></a></li>
</ul>
</li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/DataProcessorWidomContact.GContactSink.html" title="class in etomica.cavity"><span class="typeNameLink">DataProcessorWidomContact.GContactSink</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSet.html" title="class in etomica.data"><span class="typeNameLink">DataSet</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataSinkTable.html" title="class in etomica.data"><span class="typeNameLink">DataSinkTable</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataTableAverages.html" title="class in etomica.data"><span class="typeNameLink">DataTableAverages</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSet.DataSetSink.html" title="class in etomica.data"><span class="typeNameLink">DataSet.DataSetSink</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSinkBlockAveragerSFac.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSinkBlockAveragerSFac</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSinkConsole.html" title="class in etomica.data"><span class="typeNameLink">DataSinkConsole</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceAlpha2.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceAlpha2</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceBlockAvgCor.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceBlockAvgCor</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)
<ul>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceCorMSD.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceCorMSD</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/DataSourceMSD.MSDSink.html" title="interface in etomica.modules.glass">DataSourceMSD.MSDSink</a>)</li>
</ul>
</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceCorrelation.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceCorrelation</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceCorrelation.Meter.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceCorrelation.Meter</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceCorrelation.Receiver.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceCorrelation.Receiver</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/DataSinkBlockAveragerSFac.Sink.html" title="interface in etomica.modules.glass">DataSinkBlockAveragerSFac.Sink</a>)</li>
<li class="circle">etomica.modules.adsorption.<a href="etomica/modules/adsorption/DataSourceDensityFunction.html" title="class in etomica.modules.adsorption"><span class="typeNameLink">DataSourceDensityFunction</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/DataSourceEnergies.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">DataSourceEnergies</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceF.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceF</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceFE.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceFE</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceFEHistogram.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceFEHistogram</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceFOld.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceFOld</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceFs.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceFs</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceFunction.html" title="class in etomica.data"><span class="typeNameLink">DataSourceFunction</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceGroup.html" title="class in etomica.data"><span class="typeNameLink">DataSourceGroup</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceHisogram.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceHisogram</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceHistogramMSD.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceHistogramMSD</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.modules.glass.<a href="etomica/modules/glass/DataSourceMSD.MSDSink.html" title="interface in etomica.modules.glass">DataSourceMSD.MSDSink</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceImposedFEFit.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceImposedFEFit</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceImposedFEHistogram.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceImposedFEHistogram</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceIndependentSimple.html" title="class in etomica.data"><span class="typeNameLink">DataSourceIndependentSimple</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceMSD.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceMSD</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceMSDcorP.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceMSDcorP</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.modules.glass.<a href="etomica/modules/glass/DataSourceMSD.MSDSink.html" title="interface in etomica.modules.glass">DataSourceMSD.MSDSink</a>, etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceMSDcorP.DataSourceMSDcovP.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceMSDcorP.DataSourceMSDcovP</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourcePercolation.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourcePercolation</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourcePercolation.Chi4Source.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourcePercolation.Chi4Source</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourcePercolation.ImmFractionByTypeSource.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourcePercolation.ImmFractionByTypeSource</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourcePercolation.ImmFractionSource.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourcePercolation.ImmFractionSource</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourcePercolation.PercolationByImmFrac.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourcePercolation.PercolationByImmFrac</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourcePercolation0.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourcePercolation0</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourcePMSDHistory.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourcePMSDHistory</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.modules.glass.<a href="etomica/modules/glass/DataSourceMSD.MSDSink.html" title="interface in etomica.modules.glass">DataSourceMSD.MSDSink</a>, etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourcePMu.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourcePMu</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourcePN.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourcePN</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourcePoints.html" title="class in etomica.data"><span class="typeNameLink">DataSourcePoints</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourcePositionedBoltzmannFactor.html" title="class in etomica.data"><span class="typeNameLink">DataSourcePositionedBoltzmannFactor</span></a> (implements etomica.data.<a href="etomica/data/DataSourcePositioned.html" title="interface in etomica.data">DataSourcePositioned</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceQ4.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceQ4</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceQ4.MeterChi4.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceQ4.MeterChi4</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceRmsVelocity.html" title="class in etomica.data"><span class="typeNameLink">DataSourceRmsVelocity</span></a> (implements etomica.data.<a href="etomica/data/DataSourceAtomic.html" title="interface in etomica.data">DataSourceAtomic</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceScalar.html" title="class in etomica.data"><span class="typeNameLink">DataSourceScalar</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)
<ul>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorHistory.DataSourceCount.html" title="class in etomica.data"><span class="typeNameLink">AccumulatorHistory.DataSourceCount</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceAcceptanceRatio.html" title="class in etomica.data"><span class="typeNameLink">DataSourceAcceptanceRatio</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceAcceptanceProbability.html" title="class in etomica.data"><span class="typeNameLink">DataSourceAcceptanceProbability</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceAtomDistance.html" title="class in etomica.data"><span class="typeNameLink">DataSourceAtomDistance</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceAvgPressure.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceAvgPressure</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceAvgPressure2.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceAvgPressure2</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceCountCollisions.html" title="class in etomica.data"><span class="typeNameLink">DataSourceCountCollisions</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceCountSteps.html" title="class in etomica.data"><span class="typeNameLink">DataSourceCountSteps</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceCountTime.html" title="class in etomica.data"><span class="typeNameLink">DataSourceCountTime</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRoot.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRoot</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRoot.DataSourceMuRootDPressure.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRoot.DataSourceMuRootDPressure</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRoot.DataSourceMuRootDU.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRoot.DataSourceMuRootDU</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRoot.DataSourceMuRootPressure.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRoot.DataSourceMuRootPressure</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRoot.DataSourceMuRootVacancyConcentration.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRoot.DataSourceMuRootVacancyConcentration</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRoot1.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRoot1</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRoot1.DataSourceMuRootPressure.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRoot1.DataSourceMuRootPressure</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRoot1.DataSourceMuRootVacancyConcentration.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRoot1.DataSourceMuRootVacancyConcentration</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRootPMatch.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRootPMatch</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRootPMatch.DataSourceMuRootPressure.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRootPMatch.DataSourceMuRootPressure</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DataSourceMuRootPMatch.DataSourceMuRootVacancyConcentration.html" title="class in etomica.normalmode"><span class="typeNameLink">DataSourceMuRootPMatch.DataSourceMuRootVacancyConcentration</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourcePrevTime.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourcePrevTime</span></a></li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/DropletAtomicGraphic.DataSourceVaporDensity.html" title="class in etomica.modules.droplet"><span class="typeNameLink">DropletAtomicGraphic.DataSourceVaporDensity</span></a></li>
<li class="circle">etomica.modules.insertion.<a href="etomica/modules/insertion/InsertionGraphic.MeterWidom.html" title="class in etomica.modules.insertion"><span class="typeNameLink">InsertionGraphic.MeterWidom</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterAPIPotentialEnergy.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterAPIPotentialEnergy</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterAvgBondLength.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterAvgBondLength</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterBoltzmannDirect.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterBoltzmannDirect</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/MeterContactRatio.html" title="class in etomica.cavity"><span class="typeNameLink">MeterContactRatio</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/MeterConversion.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">MeterConversion</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterDensity.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterDensity</span></a></li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/MeterDensityCO.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">MeterDensityCO</span></a></li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/MeterDensityCO2.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">MeterDensityCO2</span></a></li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/MeterDensityO2.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">MeterDensityO2</span></a></li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/MeterDensitySides.html" title="class in etomica.modules.mu"><span class="typeNameLink">MeterDensitySides</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MeterDimerMoleFraction.html" title="class in etomica.association"><span class="typeNameLink">MeterDimerMoleFraction</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterDipoleSumSquared1site.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterDipoleSumSquared1site</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterDipoleSumSquaredTIP4PWater.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterDipoleSumSquaredTIP4PWater</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterDirectInitPert.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterDirectInitPert</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterDisplacementMoleculeRMS.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterDisplacementMoleculeRMS</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterDisplacementRMS.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterDisplacementRMS</span></a></li>
<li class="circle">etomica.modules.materialfracture.<a href="etomica/modules/materialfracture/MeterElongation.html" title="class in etomica.modules.materialfracture"><span class="typeNameLink">MeterElongation</span></a></li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/MeterEnd2End.html" title="class in etomica.modules.colloid"><span class="typeNameLink">MeterEnd2End</span></a></li>
<li class="circle">etomica.modules.rheology.<a href="etomica/modules/rheology/MeterEndToEnd.html" title="class in etomica.modules.rheology"><span class="typeNameLink">MeterEndToEnd</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterEnergy.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterEnergy</span></a></li>
<li class="circle">etomica.modules.adsorption.<a href="etomica/modules/adsorption/MeterExcessAdsorbed.html" title="class in etomica.modules.adsorption"><span class="typeNameLink">MeterExcessAdsorbed</span></a></li>
<li class="circle">etomica.dcvgcmd.<a href="etomica/dcvgcmd/MeterFlux.html" title="class in etomica.dcvgcmd"><span class="typeNameLink">MeterFlux</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/MeterFlux.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">MeterFlux</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.<a href="etomica/modules/multiharmonic/MeterFreeEnergy.html" title="class in etomica.modules.multiharmonic"><span class="typeNameLink">MeterFreeEnergy</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterHarmonicCoordinate.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterHarmonicCoordinate</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterHarmonicEnergy.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterHarmonicEnergy</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterHarmonicEnergyFromMove.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterHarmonicEnergyFromMove</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterJacobian.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterJacobian</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterKineticEnergy.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterKineticEnergy</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterKineticEnergyFromIntegrator.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterKineticEnergyFromIntegrator</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterKineticEnergyRigid.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterKineticEnergyRigid</span></a></li>
<li class="circle">etomica.modules.nucleation.<a href="etomica/modules/nucleation/MeterLargestCluster.html" title="class in etomica.modules.nucleation"><span class="typeNameLink">MeterLargestCluster</span></a></li>
<li class="circle">etomica.modules.materialfracture.<a href="etomica/modules/materialfracture/MeterLoad.html" title="class in etomica.modules.materialfracture"><span class="typeNameLink">MeterLoad</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterLocalDensity.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterLocalDensity</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterLocalMoleFraction.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterLocalMoleFraction</span></a></li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/MeterMappedU.html" title="class in etomica.mappedvirial"><span class="typeNameLink">MeterMappedU</span></a></li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/MeterMappedVirial.html" title="class in etomica.mappedvirial"><span class="typeNameLink">MeterMappedVirial</span></a></li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/MeterMappedVirialV.html" title="class in etomica.mappedvirial"><span class="typeNameLink">MeterMappedVirialV</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterMaxExpansion.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterMaxExpansion</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterMeanSquareDisplacement.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterMeanSquareDisplacement</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterMoleculeTemperature.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterMoleculeTemperature</span></a> (implements etomica.data.<a href="etomica/data/DataSourceMolecular.html" title="interface in etomica.data">DataSourceMolecular</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterMoleFraction.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterMoleFraction</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterNMolecules.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterNMolecules</span></a> (implements etomica.data.<a href="etomica/data/DataSourceMolecular.html" title="interface in etomica.data">DataSourceMolecular</a>)</li>
<li class="circle">etomica.modules.rheology.<a href="etomica/modules/rheology/MeterNormalStress.html" title="class in etomica.modules.rheology"><span class="typeNameLink">MeterNormalStress</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterOrientationOrderParameter.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterOrientationOrderParameter</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/MeterPairedFraction.html" title="class in etomica.cavity"><span class="typeNameLink">MeterPairedFraction</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterPairSum.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterPairSum</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterPhiDeviation.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterPhiDeviation</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPotentialEnergy.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPotentialEnergy</span></a>
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimEinStep2.MeterPotentialEnergyComposite.html" title="class in etomica.normalmode"><span class="typeNameLink">SimEinStep2.MeterPotentialEnergyComposite</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimEinStep2HCP.MeterPotentialEnergyComposite.html" title="class in etomica.normalmode"><span class="typeNameLink">SimEinStep2HCP.MeterPotentialEnergyComposite</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimOverlapSoftSphereEin.MeterPotentialEnergyComposite.html" title="class in etomica.normalmode"><span class="typeNameLink">SimOverlapSoftSphereEin.MeterPotentialEnergyComposite</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimOverlapSoftSphereEinHarm.MeterPotentialEnergyComposite.html" title="class in etomica.normalmode"><span class="typeNameLink">SimOverlapSoftSphereEinHarm.MeterPotentialEnergyComposite</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPotentialEnergyFromIntegrator.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPotentialEnergyFromIntegrator</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPressure.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPressure</span></a></li>
<li class="circle">etomica.modules.vle.<a href="etomica/modules/vle/MeterPressure2.html" title="class in etomica.modules.vle"><span class="typeNameLink">MeterPressure2</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/MeterPressureCollisionCount.html" title="class in etomica.cavity"><span class="typeNameLink">MeterPressureCollisionCount</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPressureHard.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPressureHard</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)
<ul>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/DataSourceWallPressure.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">DataSourceWallPressure</span></a></li>
<li class="circle">etomica.modules.osmosis.<a href="etomica/modules/osmosis/MeterOsmoticPressure.html" title="class in etomica.modules.osmosis"><span class="typeNameLink">MeterOsmoticPressure</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPressureMolecular.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPressureMolecular</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterPressureSuperBox.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterPressureSuperBox</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterRadiusGyration.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterRadiusGyration</span></a></li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/MeterRmin.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">MeterRmin</span></a></li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/MeterRminSpecies.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">MeterRminSpecies</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterRMSD.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterRMSD</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterRotPerturbMolecule.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterRotPerturbMolecule</span></a></li>
<li class="circle">etomica.spin.ising.<a href="etomica/spin/ising/MeterSpin.html" title="class in etomica.spin.ising"><span class="typeNameLink">MeterSpin</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterSpinMSquare.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterSpinMSquare</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.materialfracture.<a href="etomica/modules/materialfracture/MeterStrain.html" title="class in etomica.modules.materialfracture"><span class="typeNameLink">MeterStrain</span></a></li>
<li class="circle">etomica.modules.materialfracture.<a href="etomica/modules/materialfracture/MeterStress.html" title="class in etomica.modules.materialfracture"><span class="typeNameLink">MeterStress</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterTemperature.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterTemperature</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterThetaDeviation.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterThetaDeviation</span></a></li>
<li class="circle">etomica.modules.rheology.<a href="etomica/modules/rheology/MeterViscosity.html" title="class in etomica.modules.rheology"><span class="typeNameLink">MeterViscosity</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterVolume.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterVolume</span></a></li>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/MeterWallForce.html" title="class in etomica.interfacial"><span class="typeNameLink">MeterWallForce</span></a></li>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/MeterWallPosition.html" title="class in etomica.interfacial"><span class="typeNameLink">MeterWallPosition</span></a></li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/MeterWallPressure.html" title="class in etomica.modules.sam"><span class="typeNameLink">MeterWallPressure</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterWidomInsertion.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterWidomInsertion</span></a></li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/MeterWidomInsertionP.html" title="class in etomica.liquidLJ"><span class="typeNameLink">MeterWidomInsertionP</span></a></li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSourceBias.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceBias</span></a></li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSourceChiSlope.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceChiSlope</span></a></li>
<li class="circle">etomica.modules.multiharmonic.mbar.<a href="etomica/modules/multiharmonic/mbar/MultiharmonicGraphicMC.DataSourceFE.html" title="class in etomica.modules.multiharmonic.mbar"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceFE</span></a></li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSourceUa.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceUa</span></a></li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSourceUa2.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceUa2</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimOverlapLJModule.MeterPotentialEnergyDifference.html" title="class in etomica.normalmode"><span class="typeNameLink">SimOverlapLJModule.MeterPotentialEnergyDifference</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceStrings.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceStrings</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceTensorVirialHard.html" title="class in etomica.data"><span class="typeNameLink">DataSourceTensorVirialHard</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.modules.interfacial.<a href="etomica/modules/interfacial/DataSourceTensorVirialHardProfile.html" title="class in etomica.modules.interfacial"><span class="typeNameLink">DataSourceTensorVirialHardProfile</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
</ul>
</li>
<li class="circle">etomica.modules.interfacial.<a href="etomica/modules/interfacial/DataSourceTensorVirialHardProfile.DataSourceVirialProfile.html" title="class in etomica.modules.interfacial"><span class="typeNameLink">DataSourceTensorVirialHardProfile.DataSourceVirialProfile</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceUniform.html" title="class in etomica.data"><span class="typeNameLink">DataSourceUniform</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceVAC.html" title="class in etomica.modules.glass"><span class="typeNameLink">DataSourceVAC</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.virial.overlap.<a href="etomica/virial/overlap/DataSourceVirialOverlap.html" title="class in etomica.virial.overlap"><span class="typeNameLink">DataSourceVirialOverlap</span></a> (implements etomica.overlap.<a href="etomica/overlap/IntegratorOverlap.ReferenceFracSource.html" title="interface in etomica.overlap">IntegratorOverlap.ReferenceFracSource</a>)</li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/DataSourceWallPressureCatalysis.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">DataSourceWallPressureCatalysis</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/DataSourceWallPressureMu.html" title="class in etomica.modules.mu"><span class="typeNameLink">DataSourceWallPressureMu</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSplitter.html" title="class in etomica.data"><span class="typeNameLink">DataSplitter</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataStreamAction.html" title="class in etomica.data"><span class="typeNameLink">DataStreamAction</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.action.<a href="etomica/action/ResetAccumulators.html" title="class in etomica.action"><span class="typeNameLink">ResetAccumulators</span></a>
<ul>
<li class="circle">etomica.action.<a href="etomica/action/ResetAccumulatorsAveraged.html" title="class in etomica.action"><span class="typeNameLink">ResetAccumulatorsAveraged</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.server.resources.data.<a href="etomica/server/resources/data/DataStreamResource.html" title="class in etomica.server.resources.data"><span class="typeNameLink">DataStreamResource</span></a></li>
<li class="circle">etomica.server.dao.<a href="etomica/server/dao/DataStreamStore.DataPlumbing.html" title="class in etomica.server.dao"><span class="typeNameLink">DataStreamStore.DataPlumbing</span></a></li>
<li class="circle">etomica.server.resources.data.<a href="etomica/server/resources/data/DataStreamWebsocket.html" title="class in etomica.server.resources.data"><span class="typeNameLink">DataStreamWebsocket</span></a></li>
<li class="circle">etomica.server.resources.data.<a href="etomica/server/resources/data/DataStreamWebsocket.DataAndInfoEncoder.html" title="class in etomica.server.resources.data"><span class="typeNameLink">DataStreamWebsocket.DataAndInfoEncoder</span></a> (implements javax.websocket.Encoder.Text&lt;T&gt;)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataTableWriter.html" title="class in etomica.data"><span class="typeNameLink">DataTableWriter</span></a> (implements etomica.data.<a href="etomica/data/DataLogger.DataWriter.html" title="interface in etomica.data">DataLogger.DataWriter</a>)</li>
<li class="circle">etomica.data.<a href="etomica/data/DataTag.html" title="class in etomica.data"><span class="typeNameLink">DataTag</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DataTagBag.html" title="class in etomica.graphics"><span class="typeNameLink">DataTagBag</span></a></li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataTensor.html" title="class in etomica.data.types"><span class="typeNameLink">DataTensor</span></a> (implements etomica.data.<a href="etomica/data/IData.html" title="interface in etomica.data">IData</a>)</li>
<li class="circle">etomica.data.types.<a href="etomica/data/types/DataVector.html" title="class in etomica.data.types"><span class="typeNameLink">DataVector</span></a> (implements etomica.data.<a href="etomica/data/IData.html" title="interface in etomica.data">IData</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.overlap.<a href="etomica/virial/overlap/DataVirialOverlap.html" title="class in etomica.virial.overlap"><span class="typeNameLink">DataVirialOverlap</span></a> (implements etomica.overlap.<a href="etomica/overlap/IntegratorOverlap.ReferenceFracSource.html" title="interface in etomica.overlap">IntegratorOverlap.ReferenceFracSource</a>)</li>
<li class="circle">etomica.virial.overlap.<a href="etomica/virial/overlap/DataVirialOverlap.FullResult.html" title="class in etomica.virial.overlap"><span class="typeNameLink">DataVirialOverlap.FullResult</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/DCF.html" title="class in etomica.virial.cluster"><span class="typeNameLink">DCF</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/Debug.html" title="class in etomica.util"><span class="typeNameLink">Debug</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Decorate.html" title="class in etomica.graph.operations"><span class="typeNameLink">Decorate</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Decorate.DecorateParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">Decorate.DecorateParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DecorateWertheim2Site.html" title="class in etomica.graph.operations"><span class="typeNameLink">DecorateWertheim2Site</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DecorateWertheim2Site.DecorateWertheimParameters2Site.html" title="class in etomica.graph.operations"><span class="typeNameLink">DecorateWertheim2Site.DecorateWertheimParameters2Site</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DecorateWertheim2SiteRho.html" title="class in etomica.graph.operations"><span class="typeNameLink">DecorateWertheim2SiteRho</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DecorateWertheim2SiteRho.DecorateWertheimParameters2Site.html" title="class in etomica.graph.operations"><span class="typeNameLink">DecorateWertheim2SiteRho.DecorateWertheimParameters2Site</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DecorateWertheim3SiteRho.html" title="class in etomica.graph.operations"><span class="typeNameLink">DecorateWertheim3SiteRho</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DecorateWertheim3SiteRho.DecorateWertheimParameters3Site.html" title="class in etomica.graph.operations"><span class="typeNameLink">DecorateWertheim3SiteRho.DecorateWertheimParameters3Site</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DecorateWertheimNaphthalene2Rho.html" title="class in etomica.graph.operations"><span class="typeNameLink">DecorateWertheimNaphthalene2Rho</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DecorateWertheimNaphthalene2Rho.DecorateNaphthalene2Site.html" title="class in etomica.graph.operations"><span class="typeNameLink">DecorateWertheimNaphthalene2Rho.DecorateNaphthalene2Site</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/DefaultIterator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">DefaultIterator</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/DefaultLogger.html" title="class in org.jmol.util"><span class="typeNameLink">DefaultLogger</span></a> (implements org.jmol.util.<a href="org/jmol/util/LoggerInterface.html" title="interface in org.jmol.util">LoggerInterface</a>)</li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/DefaultPermutator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">DefaultPermutator</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/Permutator.html" title="interface in etomica.graph.model">Permutator</a>)</li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/DefaultSVGConverterController.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">DefaultSVGConverterController</span></a> (implements etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterController.html" title="interface in etomica.graph.view.rasterizer">SVGConverterController</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DefaultToolbar.html" title="class in etomica.graphics"><span class="typeNameLink">DefaultToolbar</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Delete.html" title="class in etomica.graph.operations"><span class="typeNameLink">Delete</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DeleteEdge.html" title="class in etomica.graph.operations"><span class="typeNameLink">DeleteEdge</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DeleteEdgeParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">DeleteEdgeParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/DestinationType.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">DestinationType</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/Device.html" title="class in etomica.graphics"><span class="typeNameLink">Device</span></a>
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceBox.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceBox</span></a> (implements javax.swing.event.ChangeListener, etomica.graphics.<a href="etomica/graphics/DeviceBoxValueChangedListener.html" title="interface in etomica.graphics">DeviceBoxValueChangedListener</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceButton.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceButton</span></a>
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceToggleButton.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceToggleButton</span></a></li>
</ul>
</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceButtonGroup.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceButtonGroup</span></a></li>
<li class="circle">etomica.zeolite.<a href="etomica/zeolite/DeviceButtonSingle.html" title="class in etomica.zeolite"><span class="typeNameLink">DeviceButtonSingle</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DeviceCellNum3DSlider.html" title="class in etomica.normalmode"><span class="typeNameLink">DeviceCellNum3DSlider</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DeviceCellNumXYSlider.html" title="class in etomica.normalmode"><span class="typeNameLink">DeviceCellNumXYSlider</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceCheckBox.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceCheckBox</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DeviceEigenvaluesSlider.html" title="class in etomica.normalmode"><span class="typeNameLink">DeviceEigenvaluesSlider</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceRunControls.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceRunControls</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceSelector.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceSelector</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceSlider.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceSlider</span></a>
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceNSelector.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceNSelector</span></a></li>
</ul>
</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceSpinner.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceSpinner</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceThermoSelector.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceThermoSelector</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceThermoSlider.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceThermoSlider</span></a></li>
<li class="circle">etomica.heVLE.<a href="etomica/heVLE/DeviceThermoSliderGEMC.html" title="class in etomica.heVLE"><span class="typeNameLink">DeviceThermoSliderGEMC</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceToggleRadioButtons.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceToggleRadioButtons</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceTrioControllerButton.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceTrioControllerButton</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/DeviceWaveVectorSlider.html" title="class in etomica.normalmode"><span class="typeNameLink">DeviceWaveVectorSlider</span></a></li>
</ul>
</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/Device.ActionSet.html" title="class in etomica.graphics"><span class="typeNameLink">Device.ActionSet</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceDelaySlider.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceDelaySlider</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DevicePlotPoints.html" title="class in etomica.graphics"><span class="typeNameLink">DevicePlotPoints</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceSpinner.SpinnerListener.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceSpinner.SpinnerListener</span></a> (implements javax.swing.event.ChangeListener, java.io.Serializable)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceTable.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceTable</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceTrioControllerButton.ComponentEventControllerButton.html" title="class in etomica.graphics"><span class="typeNameLink">DeviceTrioControllerButton.ComponentEventControllerButton</span></a> (implements java.awt.event.ComponentListener)</li>
<li class="circle">etomica.AlkaneEH.<a href="etomica/AlkaneEH/DHS_NVT.DipoleSourceDHS.html" title="class in etomica.AlkaneEH"><span class="typeNameLink">DHS_NVT.DipoleSourceDHS</span></a> (implements etomica.molecule.<a href="etomica/molecule/DipoleSource.html" title="interface in etomica.molecule">DipoleSource</a>)</li>
<li class="circle">etomica.dielectric.<a href="etomica/dielectric/DHS_NVT.DipoleSourceDHS.html" title="class in etomica.dielectric"><span class="typeNameLink">DHS_NVT.DipoleSourceDHS</span></a> (implements etomica.molecule.<a href="etomica/molecule/DipoleSource.html" title="interface in etomica.molecule">DipoleSource</a>)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/DiameterHashByElement.html" title="class in etomica.atom"><span class="typeNameLink">DiameterHashByElement</span></a> (implements etomica.atom.<a href="etomica/atom/DiameterHash.html" title="interface in etomica.atom">DiameterHash</a>)</li>
<li class="circle">etomica.atom.<a href="etomica/atom/DiameterHashByType.html" title="class in etomica.atom"><span class="typeNameLink">DiameterHashByType</span></a> (implements etomica.atom.<a href="etomica/atom/DiameterHash.html" title="interface in etomica.atom">DiameterHash</a>)
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/DiameterHashByElementType.html" title="class in etomica.atom"><span class="typeNameLink">DiameterHashByElementType</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DiameterHashGlass.html" title="class in etomica.modules.glass"><span class="typeNameLink">DiameterHashGlass</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DifByConstant.html" title="class in etomica.graph.operations"><span class="typeNameLink">DifByConstant</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DifByConstant.DifByConstantParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">DifByConstant.DifByConstantParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DifByEdge.html" title="class in etomica.graph.operations"><span class="typeNameLink">DifByEdge</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DifByNode.html" title="class in etomica.graph.operations"><span class="typeNameLink">DifByNode</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/DifParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">DifParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.units.dimensions.<a href="etomica/units/dimensions/Dimension.html" title="class in etomica.units.dimensions"><span class="typeNameLink">Dimension</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.units.dimensions.<a href="etomica/units/dimensions/Angle.html" title="class in etomica.units.dimensions"><span class="typeNameLink">Angle</span></a></li>
<li class="circle">etomica.units.dimensions.<a href="etomica/units/dimensions/Area.html" title="class in etomica.units.dimensions"><span class="typeNameLink">Area</span></a></li>
<li class="circle">etomica.units.dimensions.<a href="etomica/units/dimensions/Charge.html" title="class in etomica.units.dimensions"><span class="typeNameLink">Charge</span></a></li>
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<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/FactorOnce.FactorOnceParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">FactorOnce.FactorOnceParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/FastFourierTransform.html" title="class in etomica.math.numerical"><span class="typeNameLink">FastFourierTransform</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.compatibility.<a href="etomica/compatibility/Feature.html" title="class in etomica.compatibility"><span class="typeNameLink">Feature</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.compatibility.<a href="etomica/compatibility/NumericFeature.html" title="class in etomica.compatibility"><span class="typeNameLink">NumericFeature</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.compatibility.<a href="etomica/compatibility/StringFeature.html" title="class in etomica.compatibility"><span class="typeNameLink">StringFeature</span></a> (implements java.io.Serializable)</li>
</ul>
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<li class="circle">etomica.compatibility.<a href="etomica/compatibility/FeatureSet.html" title="class in etomica.compatibility"><span class="typeNameLink">FeatureSet</span></a> (implements java.io.Serializable)</li>
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<li class="circle">etomica.graph.property.<a href="etomica/graph/property/FFTDecomposition.ComparatorStrand.html" title="class in etomica.graph.property"><span class="typeNameLink">FFTDecomposition.ComparatorStrand</span></a> (implements java.util.Comparator&lt;T&gt;)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/FieldNodeCountMax.html" title="class in etomica.graph.property"><span class="typeNameLink">FieldNodeCountMax</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">g3dsys.images.<a href="g3dsys/images/Figure.html" title="class in g3dsys.images"><span class="typeNameLink">Figure</span></a>
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<li class="circle">g3dsys.images.<a href="g3dsys/images/Axes.html" title="class in g3dsys.images"><span class="typeNameLink">Axes</span></a></li>
<li class="circle">g3dsys.images.<a href="g3dsys/images/Ball.html" title="class in g3dsys.images"><span class="typeNameLink">Ball</span></a></li>
<li class="circle">g3dsys.images.<a href="g3dsys/images/Bond.html" title="class in g3dsys.images"><span class="typeNameLink">Bond</span></a></li>
<li class="circle">g3dsys.images.<a href="g3dsys/images/Box.html" title="class in g3dsys.images"><span class="typeNameLink">Box</span></a></li>
<li class="circle">g3dsys.images.<a href="g3dsys/images/Ellipse.html" title="class in g3dsys.images"><span class="typeNameLink">Ellipse</span></a></li>
<li class="circle">g3dsys.images.<a href="g3dsys/images/ImageShell.html" title="class in g3dsys.images"><span class="typeNameLink">ImageShell</span></a></li>
<li class="circle">g3dsys.images.<a href="g3dsys/images/Line.html" title="class in g3dsys.images"><span class="typeNameLink">Line</span></a></li>
<li class="circle">g3dsys.images.<a href="g3dsys/images/Triangle.html" title="class in g3dsys.images"><span class="typeNameLink">Triangle</span></a></li>
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</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/FindPairMoleculeIndex.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">FindPairMoleculeIndex</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/FindPairMoleculeIndexBetaN2.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">FindPairMoleculeIndexBetaN2</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/FindTransitionTemperature.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">FindTransitionTemperature</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/FiniteDifferenceDerivative.html" title="class in etomica.math.numerical"><span class="typeNameLink">FiniteDifferenceDerivative</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionMultiDimensionalDifferentiable.html" title="interface in etomica.math.function">FunctionMultiDimensionalDifferentiable</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/FiniteDifferenceDerivativeCGNitrogenBeta.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">FiniteDifferenceDerivativeCGNitrogenBeta</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/FittingFunctionNonLinear.html" title="class in etomica.math.numerical"><span class="typeNameLink">FittingFunctionNonLinear</span></a></li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/FixedEdgeCountIterator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">FixedEdgeCountIterator</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)</li>
<li class="circle">etomica.math.discrete.<a href="etomica/math/discrete/FixedSumIterator.html" title="class in etomica.math.discrete"><span class="typeNameLink">FixedSumIterator</span></a></li>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/FixedWall.html" title="class in etomica.interfacial"><span class="typeNameLink">FixedWall</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListenerMD.html" title="interface in etomica.integrator">IntegratorListenerMD</a>)</li>
<li class="circle">java.text.Format (implements java.lang.Cloneable, java.io.Serializable)
<ul>
<li class="circle">java.text.NumberFormat
<ul>
<li class="circle">etomica.util.<a href="etomica/util/ScientificFormat.html" title="class in etomica.util"><span class="typeNameLink">ScientificFormat</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/FourAssociationSitesFluid2Pt.html" title="class in etomica.virial.simulations"><span class="typeNameLink">FourAssociationSitesFluid2Pt</span></a></li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Abs.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Abs</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Chop.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Chop</span></a> (implements etomica.math.function.<a href="etomica/math/function/Function.html" title="interface in etomica.math.function">Function</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Constant.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Constant</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Exp.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Exp</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, etomica.math.function.<a href="etomica/math/function/FunctionInvertible.html" title="interface in etomica.math.function">FunctionInvertible</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Identity.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Identity</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, etomica.math.function.<a href="etomica/math/function/FunctionInvertible.html" title="interface in etomica.math.function">FunctionInvertible</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Linear.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Linear</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, etomica.math.function.<a href="etomica/math/function/FunctionInvertible.html" title="interface in etomica.math.function">FunctionInvertible</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Log.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Log</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, etomica.math.function.<a href="etomica/math/function/FunctionInvertible.html" title="interface in etomica.math.function">FunctionInvertible</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Reciprocal.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Reciprocal</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, etomica.math.function.<a href="etomica/math/function/FunctionInvertible.html" title="interface in etomica.math.function">FunctionInvertible</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.Sqrt.html" title="class in etomica.math.function"><span class="typeNameLink">Function.Sqrt</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, etomica.math.function.<a href="etomica/math/function/FunctionInvertible.html" title="interface in etomica.math.function">FunctionInvertible</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/FunctionChain.html" title="class in etomica.math.function"><span class="typeNameLink">FunctionChain</span></a> (implements etomica.math.function.<a href="etomica/math/function/Function.html" title="interface in etomica.math.function">Function</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/FunctionChain.Link.html" title="class in etomica.math.function"><span class="typeNameLink">FunctionChain.Link</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/FunctionCosIntegral.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">FunctionCosIntegral</span></a></li>
<li class="circle">g3dsys.control.<a href="g3dsys/control/G3DSys.html" title="class in g3dsys.control"><span class="typeNameLink">G3DSys</span></a></li>
<li class="circle">etomica.math.<a href="etomica/math/Gamma.html" title="class in etomica.math"><span class="typeNameLink">Gamma</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/GData.html" title="class in org.jmol.util"><span class="typeNameLink">GData</span></a>
<ul>
<li class="circle">org.jmol.g3d.<a href="org/jmol/g3d/Graphics3D.html" title="class in org.jmol.g3d"><span class="typeNameLink">Graphics3D</span></a></li>
</ul>
</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Geodesic.html" title="class in org.jmol.util"><span class="typeNameLink">Geodesic</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/GlassClustering.html" title="class in etomica.modules.glass"><span class="typeNameLink">GlassClustering</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/GlassGraphic.MeterFromDumps.html" title="class in etomica.modules.glass"><span class="typeNameLink">GlassGraphic.MeterFromDumps</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/GlassGraphic.SFacButtonAction.html" title="class in etomica.modules.glass"><span class="typeNameLink">GlassGraphic.SFacButtonAction</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/GlassProd.html" title="class in etomica.modules.glass"><span class="typeNameLink">GlassProd</span></a></li>
<li class="circle">etomica.graph.iterators.filters.<a href="etomica/graph/iterators/filters/GlobalFilter.html" title="class in etomica.graph.iterators.filters"><span class="typeNameLink">GlobalFilter</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)
<ul>
<li class="circle">etomica.graph.iterators.filters.<a href="etomica/graph/iterators/filters/IdenticalGraphFilter.html" title="class in etomica.graph.iterators.filters"><span class="typeNameLink">IdenticalGraphFilter</span></a></li>
<li class="circle">etomica.graph.iterators.filters.<a href="etomica/graph/iterators/filters/IsomorphismFilter.html" title="class in etomica.graph.iterators.filters"><span class="typeNameLink">IsomorphismFilter</span></a></li>
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<li class="circle">etomica.graph.iterators.filters.<a href="etomica/graph/iterators/filters/GlobalFilter.SignatureMaker.html" title="class in etomica.graph.iterators.filters"><span class="typeNameLink">GlobalFilter.SignatureMaker</span></a>
<ul>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/IsoFree.IsoFreeParams.html" title="class in etomica.graph.operations"><span class="typeNameLink">IsoFree.IsoFreeParams</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
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<li class="circle">etomica.util.<a href="etomica/util/Grabber.html" title="class in etomica.util"><span class="typeNameLink">Grabber</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/Grabber.ActionCornerSetter.html" title="class in etomica.util"><span class="typeNameLink">Grabber.ActionCornerSetter</span></a> (implements javax.swing.Action)</li>
<li class="circle">etomica.util.<a href="etomica/util/Grabber.CornerData.html" title="class in etomica.util"><span class="typeNameLink">Grabber.CornerData</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/Grabber.CornerSetListener.html" title="class in etomica.util"><span class="typeNameLink">Grabber.CornerSetListener</span></a> (implements java.awt.event.MouseListener)</li>
<li class="circle">etomica.util.<a href="etomica/util/Grabber.DefaultMouseListener.html" title="class in etomica.util"><span class="typeNameLink">Grabber.DefaultMouseListener</span></a> (implements java.awt.event.MouseListener)</li>
<li class="circle">etomica.config.<a href="etomica/config/GrainBoundaryConfiguration.html" title="class in etomica.config"><span class="typeNameLink">GrainBoundaryConfiguration</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>, java.io.Serializable)</li>
<li class="circle">etomica.config.<a href="etomica/config/GrainBoundaryTiltConfiguration.html" title="class in etomica.config"><span class="typeNameLink">GrainBoundaryTiltConfiguration</span></a> (implements etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config">Configuration</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/GraphExtract.html" title="class in etomica.graph.operations"><span class="typeNameLink">GraphExtract</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/GraphFactory.html" title="class in etomica.graph.model"><span class="typeNameLink">GraphFactory</span></a></li>
<li class="circle">etomica.graph.model.impl.<a href="etomica/graph/model/impl/GraphImpl.html" title="class in etomica.graph.model.impl"><span class="typeNameLink">GraphImpl</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/Graph.html" title="interface in etomica.graph.model">Graph</a>)</li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/GraphList.html" title="class in etomica.graph.model"><span class="typeNameLink">GraphList</span></a> (implements java.util.Set&lt;E&gt;)</li>
<li class="circle">etomica.graph.viewer.<a href="etomica/graph/viewer/GraphMap.html" title="class in etomica.graph.viewer"><span class="typeNameLink">GraphMap</span></a></li>
<li class="circle">etomica.graph.util.<a href="etomica/graph/util/GraphNumber.html" title="class in etomica.graph.util"><span class="typeNameLink">GraphNumber</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/GraphOp.GraphOpNull.html" title="class in etomica.graph.operations"><span class="typeNameLink">GraphOp.GraphOpNull</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/GraphOp.html" title="interface in etomica.graph.operations">GraphOp</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/GraphOpMaxRoot.html" title="class in etomica.graph.operations"><span class="typeNameLink">GraphOpMaxRoot</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/GraphOp.html" title="interface in etomica.graph.operations">GraphOp</a>)</li>
<li class="circle">etomica.veos.<a href="etomica/veos/HardRods.html" title="class in etomica.veos"><span class="typeNameLink">HardRods</span></a> (implements etomica.veos.<a href="etomica/veos/BetaSource.html" title="interface in etomica.veos">BetaSource</a>)</li>
<li class="circle">etomica.statmech.<a href="etomica/statmech/HardSphere.html" title="class in etomica.statmech"><span class="typeNameLink">HardSphere</span></a></li>
<li class="circle">etomica.statmech.<a href="etomica/statmech/HardSphereFluid.html" title="class in etomica.statmech"><span class="typeNameLink">HardSphereFluid</span></a></li>
<li class="circle">etomica.statmech.<a href="etomica/statmech/HardSphereSolid.html" title="class in etomica.statmech"><span class="typeNameLink">HardSphereSolid</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/Harmonic.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">Harmonic</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HarmonicCrystal.html" title="class in etomica.normalmode"><span class="typeNameLink">HarmonicCrystal</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HarmonicCrystalSoftSphereBCC.html" title="class in etomica.normalmode"><span class="typeNameLink">HarmonicCrystalSoftSphereBCC</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HarmonicCrystalSoftSphereFCC.html" title="class in etomica.normalmode"><span class="typeNameLink">HarmonicCrystalSoftSphereFCC</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HarmonicCrystalSoftSphereHCP.html" title="class in etomica.normalmode"><span class="typeNameLink">HarmonicCrystalSoftSphereHCP</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HarmonicCrystalSsFccNxy.html" title="class in etomica.normalmode"><span class="typeNameLink">HarmonicCrystalSsFccNxy</span></a></li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/HasArticulationPair.html" title="class in etomica.graph.property"><span class="typeNameLink">HasArticulationPair</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/HasArticulationPoint.html" title="class in etomica.graph.property"><span class="typeNameLink">HasArticulationPoint</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/HasEdgeCount.html" title="class in etomica.graph.property"><span class="typeNameLink">HasEdgeCount</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/HashMapPotentialNonBonded.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">HashMapPotentialNonBonded</span></a></li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/HasNodalPoint.html" title="class in etomica.graph.property"><span class="typeNameLink">HasNodalPoint</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/HasNoRootEdge.html" title="class in etomica.graph.property"><span class="typeNameLink">HasNoRootEdge</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/HasSimpleArticulationPoint.html" title="class in etomica.graph.property"><span class="typeNameLink">HasSimpleArticulationPoint</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
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<li class="circle">etomica.server.health.<a href="etomica/server/health/BasicHealthCheck.html" title="class in etomica.server.health"><span class="typeNameLink">BasicHealthCheck</span></a></li>
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<li class="circle">org.jmol.util.<a href="org/jmol/util/Hermite.html" title="class in org.jmol.util"><span class="typeNameLink">Hermite</span></a></li>
<li class="circle">org.jmol.g3d.<a href="org/jmol/g3d/HermiteRenderer.html" title="class in org.jmol.g3d"><span class="typeNameLink">HermiteRenderer</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HessianFromFile.html" title="class in etomica.normalmode"><span class="typeNameLink">HessianFromFile</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/HistogramDataSource.html" title="class in etomica.data"><span class="typeNameLink">HistogramDataSource</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.histogram.<a href="etomica/data/histogram/HistogramDiscrete.html" title="class in etomica.data.histogram"><span class="typeNameLink">HistogramDiscrete</span></a> (implements etomica.data.histogram.<a href="etomica/data/histogram/Histogram.html" title="interface in etomica.data.histogram">Histogram</a>)</li>
<li class="circle">etomica.data.histogram.<a href="etomica/data/histogram/HistogramNotSoSimple.html" title="class in etomica.data.histogram"><span class="typeNameLink">HistogramNotSoSimple</span></a> (implements etomica.data.histogram.<a href="etomica/data/histogram/Histogram.html" title="interface in etomica.data.histogram">Histogram</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.histogram.<a href="etomica/data/histogram/HistogramReweightedData.html" title="class in etomica.data.histogram"><span class="typeNameLink">HistogramReweightedData</span></a> (implements etomica.data.histogram.<a href="etomica/data/histogram/Histogram.html" title="interface in etomica.data.histogram">Histogram</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.histogram.<a href="etomica/data/histogram/HistogramSimple.html" title="class in etomica.data.histogram"><span class="typeNameLink">HistogramSimple</span></a> (implements etomica.data.histogram.<a href="etomica/data/histogram/Histogram.html" title="interface in etomica.data.histogram">Histogram</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.data.histogram.<a href="etomica/data/histogram/HistogramCollapsing.html" title="class in etomica.data.histogram"><span class="typeNameLink">HistogramCollapsing</span></a></li>
<li class="circle">etomica.data.histogram.<a href="etomica/data/histogram/HistogramExpanding.html" title="class in etomica.data.histogram"><span class="typeNameLink">HistogramExpanding</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.history.<a href="etomica/data/history/HistoryCollapsing.html" title="class in etomica.data.history"><span class="typeNameLink">HistoryCollapsing</span></a> (implements etomica.data.history.<a href="etomica/data/history/History.html" title="interface in etomica.data.history">History</a>)
<ul>
<li class="circle">etomica.data.history.<a href="etomica/data/history/HistoryCollapsingDiscard.html" title="class in etomica.data.history"><span class="typeNameLink">HistoryCollapsingDiscard</span></a>
<ul>
<li class="circle">etomica.data.history.<a href="etomica/data/history/HistoryCollapsingAverage.html" title="class in etomica.data.history"><span class="typeNameLink">HistoryCollapsingAverage</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.data.history.<a href="etomica/data/history/HistoryComplete.html" title="class in etomica.data.history"><span class="typeNameLink">HistoryComplete</span></a> (implements etomica.data.history.<a href="etomica/data/history/History.html" title="interface in etomica.data.history">History</a>)</li>
<li class="circle">etomica.data.history.<a href="etomica/data/history/HistoryScrolling.html" title="class in etomica.data.history"><span class="typeNameLink">HistoryScrolling</span></a> (implements etomica.data.history.<a href="etomica/data/history/History.html" title="interface in etomica.data.history">History</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/HistoryStatistics.html" title="class in etomica.modules.statistics"><span class="typeNameLink">HistoryStatistics</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/HNCGenerator.html" title="class in etomica.virial"><span class="typeNameLink">HNCGenerator</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HSNPT.ActionSummer.html" title="class in etomica.normalmode"><span class="typeNameLink">HSNPT.ActionSummer</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/HSNPT.MyAgent.html" title="class in etomica.normalmode"><span class="typeNameLink">HSNPT.MyAgent</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/HypernettedChain.html" title="class in etomica.virial"><span class="typeNameLink">HypernettedChain</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Hypersphere.html" title="class in etomica.math.geometry"><span class="typeNameLink">Hypersphere</span></a> (implements java.io.Serializable, etomica.math.geometry.<a href="etomica/math/geometry/Shape.html" title="interface in etomica.math.geometry">Shape</a>)
<ul>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Circle.html" title="class in etomica.math.geometry"><span class="typeNameLink">Circle</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Sphere.html" title="class in etomica.math.geometry"><span class="typeNameLink">Sphere</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/IdenticalFree.html" title="class in etomica.graph.operations"><span class="typeNameLink">IdenticalFree</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/IEGenerator.html" title="class in etomica.virial"><span class="typeNameLink">IEGenerator</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/PYGenerator.html" title="class in etomica.virial"><span class="typeNameLink">PYGenerator</span></a></li>
</ul>
</li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/Ifactor.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">Ifactor</span></a> (implements java.lang.Cloneable, java.lang.Comparable&lt;T&gt;)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/IndexIteratorIncreasing.html" title="class in etomica.lattice"><span class="typeNameLink">IndexIteratorIncreasing</span></a></li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/IndexIteratorRectangular.html" title="class in etomica.lattice"><span class="typeNameLink">IndexIteratorRectangular</span></a> (implements etomica.lattice.<a href="etomica/lattice/IndexIterator.html" title="interface in etomica.lattice">IndexIterator</a>, etomica.lattice.<a href="etomica/lattice/IndexIteratorSizable.html" title="interface in etomica.lattice">IndexIteratorSizable</a>, java.io.Serializable)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/IndexIteratorReflecting.html" title="class in etomica.lattice"><span class="typeNameLink">IndexIteratorReflecting</span></a> (implements etomica.lattice.<a href="etomica/lattice/IndexIterator.html" title="interface in etomica.lattice">IndexIterator</a>)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/IndexIteratorTriangular.html" title="class in etomica.lattice"><span class="typeNameLink">IndexIteratorTriangular</span></a> (implements etomica.lattice.<a href="etomica/lattice/IndexIterator.html" title="interface in etomica.lattice">IndexIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/IndexIteratorTriangularPermutations.html" title="class in etomica.lattice"><span class="typeNameLink">IndexIteratorTriangularPermutations</span></a> (implements etomica.lattice.<a href="etomica/lattice/IndexIterator.html" title="interface in etomica.lattice">IndexIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.util.collections.<a href="etomica/util/collections/IndexMap.html" title="class in etomica.util.collections"><span class="typeNameLink">IndexMap</span></a>&lt;V&gt; (implements java.util.Map&lt;K,V&gt;)</li>
<li class="circle">etomica.meta.properties.<a href="etomica/meta/properties/InstanceProperty.html" title="class in etomica.meta.properties"><span class="typeNameLink">InstanceProperty</span></a> (implements etomica.meta.properties.<a href="etomica/meta/properties/Property.html" title="interface in etomica.meta.properties">Property</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Int.html" title="class in etomica.graph.operations"><span class="typeNameLink">Int</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Int2IntHash.html" title="class in org.jmol.util"><span class="typeNameLink">Int2IntHash</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/Integrator.html" title="class in etomica.integrator"><span class="typeNameLink">Integrator</span></a>
<ul>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmootherApp.IntegratorSmoother.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmootherApp.IntegratorSmoother</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/AkimaSplineSmootherDyApp.IntegratorSmoother.html" title="class in etomica.math.numerical"><span class="typeNameLink">AkimaSplineSmootherDyApp.IntegratorSmoother</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorBox.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorBox</span></a>
<ul>
<li class="circle">etomica.dcvgcmd.<a href="etomica/dcvgcmd/IntegratorDCVGCMD.html" title="class in etomica.dcvgcmd"><span class="typeNameLink">IntegratorDCVGCMD</span></a></li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/IntegratorDCVGCMD.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">IntegratorDCVGCMD</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/IntegratorDimerApproach.html" title="class in etomica.action"><span class="typeNameLink">IntegratorDimerApproach</span></a></li>
<li class="circle">etomica.dimer.<a href="etomica/dimer/IntegratorDimerMin.html" title="class in etomica.dimer"><span class="typeNameLink">IntegratorDimerMin</span></a></li>
<li class="circle">etomica.dimer.<a href="etomica/dimer/IntegratorDimerRT.html" title="class in etomica.dimer"><span class="typeNameLink">IntegratorDimerRT</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.dimer.<a href="etomica/dimer/IntegratorEnergyMap.html" title="class in etomica.dimer"><span class="typeNameLink">IntegratorEnergyMap</span></a></li>
<li class="circle">etomica.modules.adsorption.<a href="etomica/modules/adsorption/IntegratorHybrid.html" title="class in etomica.modules.adsorption"><span class="typeNameLink">IntegratorHybrid</span></a></li>
<li class="circle">etomica.kmc.<a href="etomica/kmc/IntegratorKMC.html" title="class in etomica.kmc"><span class="typeNameLink">IntegratorKMC</span></a></li>
<li class="circle">etomica.kmc.<a href="etomica/kmc/IntegratorKMCCluster.html" title="class in etomica.kmc"><span class="typeNameLink">IntegratorKMCCluster</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorMC.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorMC</span></a>
<ul>
<li class="circle">etomica.tmmc.<a href="etomica/tmmc/IntegratorTMMC.html" title="class in etomica.tmmc"><span class="typeNameLink">IntegratorTMMC</span></a></li>
</ul>
</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorMD.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorMD</span></a> (implements etomica.box.<a href="etomica/box/BoxEventListener.html" title="interface in etomica.box">BoxEventListener</a>)
<ul>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/IntegratorDroplet.html" title="class in etomica.modules.droplet"><span class="typeNameLink">IntegratorDroplet</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorGear4.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorGear4</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorHard.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorHard</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.nbr.list.<a href="etomica/nbr/list/INeighborListListener.html" title="interface in etomica.nbr.list">INeighborListListener</a>)
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/IntegratorHardMDMC.html" title="class in etomica.normalmode"><span class="typeNameLink">IntegratorHardMDMC</span></a></li>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/IntegratorHardPiston.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">IntegratorHardPiston</span></a></li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/IntegratorHarmonic.html" title="class in etomica.normalmode"><span class="typeNameLink">IntegratorHarmonic</span></a></li>
<li class="circle">etomica.modules.rheology.<a href="etomica/modules/rheology/IntegratorPolymer.html" title="class in etomica.modules.rheology"><span class="typeNameLink">IntegratorPolymer</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorRigidIterative.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorRigidIterative</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, etomica.species.<a href="etomica/species/SpeciesAgentManager.AgentSource.html" title="interface in etomica.species">SpeciesAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorRigidMatrixIterative.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorRigidMatrixIterative</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, etomica.species.<a href="etomica/species/SpeciesAgentManager.AgentSource.html" title="interface in etomica.species">SpeciesAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorVelocityVerlet.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorVelocityVerlet</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)
<ul>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/IntegratorFixedWall.html" title="class in etomica.interfacial"><span class="typeNameLink">IntegratorFixedWall</span></a></li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/IntegratorImageHarmonicMD.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">IntegratorImageHarmonicMD</span></a></li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/IntegratorImageMultistepMD.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">IntegratorImageMultistepMD</span></a></li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/IntegratorMDHarmonicMC.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">IntegratorMDHarmonicMC</span></a></li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/IntegratorVelocityVerletSAM.html" title="class in etomica.modules.sam"><span class="typeNameLink">IntegratorVelocityVerletSAM</span></a></li>
</ul>
</li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/IntegratorVelocityVerletQuaternion.html" title="class in etomica.rotation"><span class="typeNameLink">IntegratorVelocityVerletQuaternion</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, etomica.species.<a href="etomica/species/SpeciesAgentManager.AgentSource.html" title="interface in etomica.species">SpeciesAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorVelocityVerletShake.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorVelocityVerletShake</span></a> (implements etomica.species.<a href="etomica/species/SpeciesAgentManager.AgentSource.html" title="interface in etomica.species">SpeciesAgentManager.AgentSource</a>&lt;E&gt;)
<ul>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorVelocityVerletRattle.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorVelocityVerletRattle</span></a></li>
</ul>
</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorVerlet.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorVerlet</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorManagerMC.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorManagerMC</span></a>
<ul>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorGEMC.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorGEMC</span></a></li>
<li class="circle">etomica.overlap.<a href="etomica/overlap/IntegratorOverlap.html" title="class in etomica.overlap"><span class="typeNameLink">IntegratorOverlap</span></a></li>
<li class="circle">etomica.virial.overlap.<a href="etomica/virial/overlap/IntegratorOverlap.html" title="class in etomica.virial.overlap"><span class="typeNameLink">IntegratorOverlap</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorPT.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorPT</span></a></li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/IntegratorRGEMC.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">IntegratorRGEMC</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.action.<a href="etomica/action/IntegratorActionAdapter.html" title="class in etomica.action"><span class="typeNameLink">IntegratorActionAdapter</span></a> (implements etomica.action.<a href="etomica/action/IntegratorAction.html" title="interface in etomica.action">IntegratorAction</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.action.<a href="etomica/action/IntegratorReset.html" title="class in etomica.action"><span class="typeNameLink">IntegratorReset</span></a></li>
<li class="circle">etomica.zeolite.<a href="etomica/zeolite/ZeoliteSimStart.html" title="class in etomica.zeolite"><span class="typeNameLink">ZeoliteSimStart</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/IntegratorDCVGCMD.Mu1Modulator.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">IntegratorDCVGCMD.Mu1Modulator</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/IntegratorDCVGCMD.Mu2Modulator.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">IntegratorDCVGCMD.Mu2Modulator</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/IntegratorDroplet.MyAgent.html" title="class in etomica.modules.droplet"><span class="typeNameLink">IntegratorDroplet.MyAgent</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorEvent.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorEvent</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorEventManager.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorEventManager</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorGear4.Agent.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorGear4.Agent</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorHard.Agent.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorHard.Agent</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionHandlerUp.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorHard.CollisionHandlerUp</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorListenerAction.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorListenerAction</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorListenerGroupSeries.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorListenerGroupSeries</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorMD.VectorSource.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorMD.VectorSource</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorPT.BoxTracker.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorPT.BoxTracker</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.util.<a href="etomica/util/IListener.html" title="interface in etomica.util">IListener</a>&lt;E&gt;, java.io.Serializable)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorRigidIterative.AtomForceAgent.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorRigidIterative.AtomForceAgent</span></a> (implements etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator">Integrator.Forcible</a>, java.io.Serializable)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorRigidIterative.MoleculeAgent.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorRigidIterative.MoleculeAgent</span></a> (implements etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator">Integrator.Forcible</a>, etomica.integrator.<a href="etomica/integrator/Integrator.Torquable.html" title="interface in etomica.integrator">Integrator.Torquable</a>, java.io.Serializable)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorRigidMatrixIterative.BoxImposePbcMolecule.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorRigidMatrixIterative.BoxImposePbcMolecule</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/IntegratorVelocityVerletQuaternion.MoleculeAgent.html" title="class in etomica.rotation"><span class="typeNameLink">IntegratorVelocityVerletQuaternion.MoleculeAgent</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/IntegratorVelocityVerletQuaternion.MyTypeAgent.html" title="class in etomica.rotation"><span class="typeNameLink">IntegratorVelocityVerletQuaternion.MyTypeAgent</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorVelocityVerletShake.BondConstraints.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorVelocityVerletShake.BondConstraints</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorVerlet.Agent.html" title="class in etomica.integrator"><span class="typeNameLink">IntegratorVerlet.Agent</span></a></li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/InteractionTracker.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">InteractionTracker</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/InteractionTracker.CatalysisAgent.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">InteractionTracker.CatalysisAgent</span></a></li>
<li class="circle">etomica.modules.interfacial.<a href="etomica/modules/interfacial/InterfacialSWGraphic.ModifierBoxSize.html" title="class in etomica.modules.interfacial"><span class="typeNameLink">InterfacialSWGraphic.ModifierBoxSize</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Interpreter.html" title="class in etomica.graph.engine"><span class="typeNameLink">Interpreter</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/ConsoleReader.html" title="interface in etomica.graph.engine">ConsoleReader</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/IntParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">IntParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/IntSet.html" title="class in etomica.virial"><span class="typeNameLink">IntSet</span></a> (implements java.lang.Comparable&lt;T&gt;)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/IsArticulationPair.html" title="class in etomica.graph.property"><span class="typeNameLink">IsArticulationPair</span></a></li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/IsArticulationPoint.html" title="class in etomica.graph.property"><span class="typeNameLink">IsArticulationPoint</span></a></li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/IsBiconnected.html" title="class in etomica.graph.property"><span class="typeNameLink">IsBiconnected</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/IsConnected.html" title="class in etomica.graph.property"><span class="typeNameLink">IsConnected</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/IsFFT.html" title="class in etomica.graph.property"><span class="typeNameLink">IsFFT</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/IsFFT.html" title="class in etomica.virial"><span class="typeNameLink">IsFFT</span></a> (implements etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property">Property</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/IsoFree.html" title="class in etomica.graph.operations"><span class="typeNameLink">IsoFree</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/IteratorDirective.html" title="class in etomica.potential"><span class="typeNameLink">IteratorDirective</span></a></li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/IteratorFactory.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">IteratorFactory</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/IteratorToSet.html" title="class in etomica.graph.iterators"><span class="typeNameLink">IteratorToSet</span></a></li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/IteratorWrapper.html" title="class in etomica.graph.iterators"><span class="typeNameLink">IteratorWrapper</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)</li>
<li class="circle">org.jmol.viewer.<a href="org/jmol/viewer/JmolConstants.html" title="class in org.jmol.viewer"><span class="typeNameLink">JmolConstants</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/JmolFont.html" title="class in org.jmol.util"><span class="typeNameLink">JmolFont</span></a></li>
<li class="circle">com.fasterxml.jackson.databind.JsonSerializer&lt;T&gt; (implements com.fasterxml.jackson.databind.jsonFormatVisitors.JsonFormatVisitable)
<ul>
<li class="circle">com.fasterxml.jackson.databind.ser.std.StdSerializer&lt;T&gt; (implements com.fasterxml.jackson.databind.jsonFormatVisitors.JsonFormatVisitable, com.fasterxml.jackson.databind.jsonschema.SchemaAware, java.io.Serializable)
<ul>
<li class="circle">etomica.server.serializers.<a href="etomica/server/serializers/DataSerializer.html" title="class in etomica.server.serializers"><span class="typeNameLink">DataSerializer</span></a></li>
<li class="circle">etomica.server.serializers.<a href="etomica/server/serializers/PropertySerializer.html" title="class in etomica.server.serializers"><span class="typeNameLink">PropertySerializer</span></a></li>
<li class="circle">etomica.meta.serializers.<a href="etomica/meta/serializers/VectorSerializer.html" title="class in etomica.meta.serializers"><span class="typeNameLink">VectorSerializer</span></a></li>
<li class="circle">etomica.server.serializers.<a href="etomica/server/serializers/WrapperSerializer.html" title="class in etomica.server.serializers"><span class="typeNameLink">WrapperSerializer</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.modules.crystalviewer.<a href="etomica/modules/crystalviewer/LatticeEditor.html" title="class in etomica.modules.crystalviewer"><span class="typeNameLink">LatticeEditor</span></a></li>
<li class="circle">etomica.modules.crystalviewer.<a href="etomica/modules/crystalviewer/LatticeEditor.NModifier.html" title="class in etomica.modules.crystalviewer"><span class="typeNameLink">LatticeEditor.NModifier</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticePlane.html" title="class in etomica.lattice"><span class="typeNameLink">LatticePlane</span></a> (implements etomica.atom.<a href="etomica/atom/AtomTest.html" title="interface in etomica.atom">AtomTest</a>, java.io.Serializable)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeSum.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeSum</span></a></li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/LatticeSumCrystal.html" title="class in etomica.lattice"><span class="typeNameLink">LatticeSumCrystal</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/LatticeSumCrystalMolecular.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">LatticeSumCrystalMolecular</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/LatticeSumMolecularCrystal.html" title="class in etomica.normalmode"><span class="typeNameLink">LatticeSumMolecularCrystal</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Launcher.html" title="class in etomica.graph.engine"><span class="typeNameLink">Launcher</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Launcher.ConsoleWindowRunnable.html" title="class in etomica.graph.engine"><span class="typeNameLink">Launcher.ConsoleWindowRunnable</span></a> (implements java.lang.Runnable)</li>
<li class="circle">etomica.statmech.<a href="etomica/statmech/LennardJones.html" title="class in etomica.statmech"><span class="typeNameLink">LennardJones</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/LinearFit.html" title="class in etomica.math.numerical"><span class="typeNameLink">LinearFit</span></a></li>
<li class="circle">etomica.units.gui.<a href="etomica/units/gui/Lister.html" title="class in etomica.units.gui"><span class="typeNameLink">Lister</span></a></li>
<li class="circle">etomica.units.systems.<a href="etomica/units/systems/LJ.LJUnit.html" title="class in etomica.units.systems"><span class="typeNameLink">LJ.LJUnit</span></a> (implements etomica.units.<a href="etomica/units/Unit.html" title="interface in etomica.units">Unit</a>)</li>
<li class="circle">etomica.simulation.prototypes.<a href="etomica/simulation/prototypes/LJMC3D.Graphic.html" title="class in etomica.simulation.prototypes"><span class="typeNameLink">LJMC3D.Graphic</span></a></li>
<li class="circle">etomica.simulation.prototypes.<a href="etomica/simulation/prototypes/LJMC3DDimer.Graphic.html" title="class in etomica.simulation.prototypes"><span class="typeNameLink">LJMC3DDimer.Graphic</span></a></li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/LjMd3D.ValueCache.html" title="class in etomica.liquidLJ"><span class="typeNameLink">LjMd3D.ValueCache</span></a></li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/LjMd3D.VolumeBias.html" title="class in etomica.liquidLJ"><span class="typeNameLink">LjMd3D.VolumeBias</span></a> (implements etomica.math.function.<a href="etomica/math/function/IFunction.html" title="interface in etomica.math.function">IFunction</a>)</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/LjMd3Dv2y.html" title="class in etomica.liquidLJ"><span class="typeNameLink">LjMd3Dv2y</span></a></li>
<li class="circle">etomica.modules.vle.<a href="etomica/modules/vle/LJQB2.html" title="class in etomica.modules.vle"><span class="typeNameLink">LJQB2</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/LJTSRefLJ.html" title="class in etomica.virial.simulations"><span class="typeNameLink">LJTSRefLJ</span></a></li>
<li class="circle">etomica.math.<a href="etomica/math/LnFactorialBenchmark.html" title="class in etomica.math"><span class="typeNameLink">LnFactorialBenchmark</span></a></li>
<li class="circle">etomica.graph.iterators.filters.<a href="etomica/graph/iterators/filters/LocalFilter.html" title="class in etomica.graph.iterators.filters"><span class="typeNameLink">LocalFilter</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)
<ul>
<li class="circle">etomica.graph.iterators.filters.<a href="etomica/graph/iterators/filters/FieldNodeCount.html" title="class in etomica.graph.iterators.filters"><span class="typeNameLink">FieldNodeCount</span></a></li>
<li class="circle">etomica.graph.iterators.filters.<a href="etomica/graph/iterators/filters/PropertyFilter.html" title="class in etomica.graph.iterators.filters"><span class="typeNameLink">PropertyFilter</span></a></li>
</ul>
</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Logger.html" title="class in org.jmol.util"><span class="typeNameLink">Logger</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Main</span></a> (implements etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterController.html" title="interface in etomica.graph.view.rasterizer">SVGConverterController</a>)</li>
<li class="circle">etomica.<a href="etomica/Main.html" title="class in etomica"><span class="typeNameLink">Main</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.AbstractOptionHandler.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Main.AbstractOptionHandler</span></a> (implements etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.OptionHandler.html" title="interface in etomica.graph.view.rasterizer">Main.OptionHandler</a>)
<ul>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.NoValueOptionHandler.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Main.NoValueOptionHandler</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.SingleValueOptionHandler.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Main.SingleValueOptionHandler</span></a>
<ul>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.ColorOptionHandler.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Main.ColorOptionHandler</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.FloatOptionHandler.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Main.FloatOptionHandler</span></a>
<ul>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.TimeOptionHandler.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Main.TimeOptionHandler</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.RectangleOptionHandler.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Main.RectangleOptionHandler</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/MassProductionVirialRowleyAlcohol.html" title="class in etomica.models.rowley"><span class="typeNameLink">MassProductionVirialRowleyAlcohol</span></a></li>
<li class="circle">etomica.graph.isomorphism.<a href="etomica/graph/isomorphism/Match.html" title="class in etomica.graph.isomorphism"><span class="typeNameLink">Match</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/MathTiming.html" title="class in etomica.util"><span class="typeNameLink">MathTiming</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Matrix3f.html" title="class in org.jmol.util"><span class="typeNameLink">Matrix3f</span></a> (implements java.io.Serializable)</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Matrix4f.html" title="class in org.jmol.util"><span class="typeNameLink">Matrix4f</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MaxIsomorph.html" title="class in etomica.graph.operations"><span class="typeNameLink">MaxIsomorph</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MaxIsomorph.MaxIsomorphParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">MaxIsomorph.MaxIsomorphParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)
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<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MaxIsomorphWertheim.MaxIsomorphWertheimParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">MaxIsomorphWertheim.MaxIsomorphWertheimParameters</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MaxIsomorphWertheim.html" title="class in etomica.graph.operations"><span class="typeNameLink">MaxIsomorphWertheim</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.statmech.<a href="etomica/statmech/MaxwellBoltzmann.html" title="class in etomica.statmech"><span class="typeNameLink">MaxwellBoltzmann</span></a></li>
<li class="circle">etomica.statmech.<a href="etomica/statmech/MaxwellBoltzmann.Distribution.html" title="class in etomica.statmech"><span class="typeNameLink">MaxwellBoltzmann.Distribution</span></a> (implements etomica.math.function.<a href="etomica/math/function/Function.html" title="interface in etomica.math.function">Function</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerD2FDT2Spherical.html" title="class in etomica.virial"><span class="typeNameLink">MayerD2FDT2Spherical</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerDFDTSpherical.html" title="class in etomica.virial"><span class="typeNameLink">MayerDFDTSpherical</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerDFQFHDTSpherical.html" title="class in etomica.virial"><span class="typeNameLink">MayerDFQFHDTSpherical</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerEGeneral.html" title="class in etomica.virial"><span class="typeNameLink">MayerEGeneral</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerENonGeneral.html" title="class in etomica.virial"><span class="typeNameLink">MayerENonGeneral</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerESpherical.html" title="class in etomica.virial"><span class="typeNameLink">MayerESpherical</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerEHardSphere.html" title="class in etomica.virial"><span class="typeNameLink">MayerEHardSphere</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionNonAdditiveFull.html" title="class in etomica.virial"><span class="typeNameLink">MayerFunctionNonAdditiveFull</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunctionNonAdditive.html" title="interface in etomica.virial">MayerFunctionNonAdditive</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionProductGeneral.html" title="class in etomica.virial"><span class="typeNameLink">MayerFunctionProductGeneral</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionSum.html" title="class in etomica.virial"><span class="typeNameLink">MayerFunctionSum</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionSumGeneral.html" title="class in etomica.virial"><span class="typeNameLink">MayerFunctionSumGeneral</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionTemperature.html" title="class in etomica.virial"><span class="typeNameLink">MayerFunctionTemperature</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionThreeBody.html" title="class in etomica.virial"><span class="typeNameLink">MayerFunctionThreeBody</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunctionNonAdditive.html" title="interface in etomica.virial">MayerFunctionNonAdditive</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionMolecularThreeBody.html" title="class in etomica.virial"><span class="typeNameLink">MayerFunctionMolecularThreeBody</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionSphericalThreeBody.html" title="class in etomica.virial"><span class="typeNameLink">MayerFunctionSphericalThreeBody</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerGeneral.html" title="class in etomica.virial"><span class="typeNameLink">MayerGeneral</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerGeneralAtomic.html" title="class in etomica.virial"><span class="typeNameLink">MayerGeneralAtomic</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerGeneralSpherical.html" title="class in etomica.virial"><span class="typeNameLink">MayerGeneralSpherical</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerSphericalPlus.html" title="class in etomica.virial"><span class="typeNameLink">MayerSphericalPlus</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerHardSphere.html" title="class in etomica.virial"><span class="typeNameLink">MayerHardSphere</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerHSMixture.html" title="class in etomica.virial"><span class="typeNameLink">MayerHSMixture</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/MayerIonicDiagram1qbond.html" title="class in etomica.virial.cluster"><span class="typeNameLink">MayerIonicDiagram1qbond</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/MayerIonicDiagram2qbonds.html" title="class in etomica.virial.cluster"><span class="typeNameLink">MayerIonicDiagram2qbonds</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/MayerIonicDiagram4qbonds.html" title="class in etomica.virial.cluster"><span class="typeNameLink">MayerIonicDiagram4qbonds</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerPTAtt.html" title="class in etomica.virial"><span class="typeNameLink">MayerPTAtt</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerPUGeneral.html" title="class in etomica.virial"><span class="typeNameLink">MayerPUGeneral</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerSphericalPTAtt.html" title="class in etomica.virial"><span class="typeNameLink">MayerSphericalPTAtt</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerSSSeries.html" title="class in etomica.virial"><span class="typeNameLink">MayerSSSeries</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerWell.html" title="class in etomica.virial"><span class="typeNameLink">MayerWell</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerXSpherical.html" title="class in etomica.virial"><span class="typeNameLink">MayerXSpherical</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMove.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMove</span></a>
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveBox.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveBox</span></a>
<ul>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/MCMoveAtomSwap.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">MCMoveAtomSwap</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveBiasUB.html" title="class in etomica.association"><span class="typeNameLink">MCMoveBiasUB</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveBiasUBMolecule.html" title="class in etomica.association"><span class="typeNameLink">MCMoveBiasUBMolecule</span></a> (implements etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMolecular.html" title="interface in etomica.integrator.mcmove">MCMoveMolecular</a>)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveBoxStep.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveBoxStep</span></a> (implements etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveStepDependent.html" title="interface in etomica.integrator.mcmove">MCMoveStepDependent</a>)
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveAtom.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveAtom</span></a>
<ul>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveAtomDimer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveAtomDimer</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveAtomInRegion.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveAtomInRegion</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveAtomMonomer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveAtomMonomer</span></a></li>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/MCMoveAtomNbr.html" title="class in etomica.interfacial"><span class="typeNameLink">MCMoveAtomNbr</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveAtomNoSmer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveAtomNoSmer</span></a></li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/MCMoveAtomNPath.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">MCMoveAtomNPath</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveAtomSmer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveAtomSmer</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtom.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtom</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomChainHSTail.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomChainHSTail</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomDiscrete.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomDiscrete</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomHSChain.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomHSChain</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomHSChainMix.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomHSChainMix</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomSQWChain.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomSQWChain</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomHSRing.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomHSRing</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomHSTree.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomHSTree</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomHSTreeMix.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomHSTreeMix</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomSQWTree.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomSQWTree</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomInBox.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomInBox</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomMulti.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomMulti</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomQ.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomQ</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAtomRotateMulti.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAtomRotateMulti</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterPolyhedraChain.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterPolyhedraChain</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterPolyhedraTree.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterPolyhedraTree</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveRotate.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveRotate</span></a>
<ul>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MCMoveRotate3Pair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MCMoveRotate3Pair</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveRotateNoSmer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveRotateNoSmer</span></a></li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MCMoveRotatePair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MCMoveRotatePair</span></a></li>
</ul>
</li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveRotateAssociated.html" title="class in etomica.association"><span class="typeNameLink">MCMoveRotateAssociated</span></a></li>
</ul>
</li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/MCMoveAtomCoupled.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">MCMoveAtomCoupled</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveAtomCoupled.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveAtomCoupled</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveAtomCoupledBennet.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveAtomCoupledBennet</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveAtomCoupledUmbrella.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveAtomCoupledUmbrella</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveAtomSuperBox.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveAtomSuperBox</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveBoxSize.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveBoxSize</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveChangeBondLength.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveChangeBondLength</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAngleBend.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAngleBend</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterAngleBendAceticAcid.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterAngleBendAceticAcid</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveDimer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveDimer</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveDimer.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveDimer</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveDimerRotate.html" title="class in etomica.association"><span class="typeNameLink">MCMoveDimerRotate</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveDimerRotate.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveDimerRotate</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveHarmonicStep.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveHarmonicStep</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMolecule.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveMolecule</span></a> (implements etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMolecular.html" title="interface in etomica.integrator.mcmove">MCMoveMolecular</a>)
<ul>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MCMoveBondLength.html" title="class in etomica.starpolymer"><span class="typeNameLink">MCMoveBondLength</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterMolecule.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterMolecule</span></a>
<ul>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MCMoveClusterBondLength.html" title="class in etomica.starpolymer"><span class="typeNameLink">MCMoveClusterBondLength</span></a></li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MCMoveClusterConformationMDTest.html" title="class in etomica.starpolymer"><span class="typeNameLink">MCMoveClusterConformationMDTest</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterMoleculeLayerMove.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterMoleculeLayerMove</span></a></li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MCMoveClusterRotateArm.html" title="class in etomica.starpolymer"><span class="typeNameLink">MCMoveClusterRotateArm</span></a></li>
</ul>
</li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MCMoveClusterMoleculeHSChain.html" title="class in etomica.starpolymer"><span class="typeNameLink">MCMoveClusterMoleculeHSChain</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterMoleculeHSChain.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterMoleculeHSChain</span></a></li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MCMoveClusterMoleculeHSChainB3.html" title="class in etomica.starpolymer"><span class="typeNameLink">MCMoveClusterMoleculeHSChainB3</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterMoleculeMulti.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterMoleculeMulti</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterRotateCH3.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterRotateCH3</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterTorsionAceticAcid.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterTorsionAceticAcid</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterTorsionAlkaneEH.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterTorsionAlkaneEH</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterTorsionMulti.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterTorsionMulti</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterWiggleAceticAcid.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterWiggleAceticAcid</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterWiggleAlkaneEH.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterWiggleAlkaneEH</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterWiggleMulti.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterWiggleMulti</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveMoleculeMonomer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveMoleculeMonomer</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveMoleculeSmer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveMoleculeSmer</span></a></li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MCMoveRotateArm.html" title="class in etomica.starpolymer"><span class="typeNameLink">MCMoveRotateArm</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveRotateMolecule3D.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveRotateMolecule3D</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterRotateMolecule3D.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterRotateMolecule3D</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterRotateMoleculeMulti.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterRotateMoleculeMulti</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveMoleculeRotateAssociated.html" title="class in etomica.association"><span class="typeNameLink">MCMoveMoleculeRotateAssociated</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveRotateMoleculePhiTheta.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveRotateMoleculePhiTheta</span></a></li>
</ul>
</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MCMoveRotateMolecule3DConstraint.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MCMoveRotateMolecule3DConstraint</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MCMoveRotateMolecule3DFixedAngle.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MCMoveRotateMolecule3DFixedAngle</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MCMoveRotateMolecule3DN2AveCosThetaConstraint.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MCMoveRotateMolecule3DN2AveCosThetaConstraint</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MCMoveRotateMolecule3DSuperBox.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MCMoveRotateMolecule3DSuperBox</span></a> (implements etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMolecular.html" title="interface in etomica.integrator.mcmove">MCMoveMolecular</a>)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveTorsionAceticAcid.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveTorsionAceticAcid</span></a></li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MCMoveWiggle.html" title="class in etomica.starpolymer"><span class="typeNameLink">MCMoveWiggle</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveWiggleAceticAcid.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveWiggleAceticAcid</span></a></li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveMoleculeCoupled.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveMoleculeCoupled</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MCMoveMoleculeCoupledInitPert.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MCMoveMoleculeCoupledInitPert</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MCMoveMoleculeCoupledSuperBox.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MCMoveMoleculeCoupledSuperBox</span></a> (implements etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMolecular.html" title="interface in etomica.integrator.mcmove">MCMoveMolecular</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMovePhaseAngle.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMovePhaseAngle</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveSingleMode.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveSingleMode</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveSmer.html" title="class in etomica.association"><span class="typeNameLink">MCMoveSmer</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveSmerRotate.html" title="class in etomica.association"><span class="typeNameLink">MCMoveSmerRotate</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveVolume.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveVolume</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveVolumeAssociated.html" title="class in etomica.association"><span class="typeNameLink">MCMoveVolumeAssociated</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveVolumeAssociatedMolecule.html" title="class in etomica.association"><span class="typeNameLink">MCMoveVolumeAssociatedMolecule</span></a> (implements etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMolecular.html" title="interface in etomica.integrator.mcmove">MCMoveMolecular</a>, etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveVolumeMonoclinic.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveVolumeMonoclinic</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveVolumeMonoclinicAngle.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveVolumeMonoclinicAngle</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveVolumeMonoclinicScaled.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveVolumeMonoclinicScaled</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MCMoveVolumeN2.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MCMoveVolumeN2</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveVolumeSolid.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveVolumeSolid</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveVolumeSolidNPTMolecular.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveVolumeSolidNPTMolecular</span></a>
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveVolumeSolidNPTMolecularOriented.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveVolumeSolidNPTMolecularOriented</span></a></li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveWV.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveWV</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterDiagram.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterDiagram</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterReptateMulti.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterReptateMulti</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterRingPartialRegrow.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterRingPartialRegrow</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterRingRegrow.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterRingRegrow</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterRingRegrowExchange.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterRingRegrowExchange</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterRingRegrowOrientation.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterRingRegrowOrientation</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MCMoveClusterRingScale.html" title="class in etomica.virial"><span class="typeNameLink">MCMoveClusterRingScale</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveEinsteinCrystal.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveEinsteinCrystal</span></a></li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/MCMoveGeometricCluster.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">MCMoveGeometricCluster</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveHarmonic.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveHarmonic</span></a>
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MCMoveHarmonicEin.html" title="class in etomica.normalmode"><span class="typeNameLink">MCMoveHarmonicEin</span></a></li>
</ul>
</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveInsertDelete.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveInsertDelete</span></a>
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveInsertDeleteBiased.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveInsertDeleteBiased</span></a>
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveInsertDeleteLatticeVacancy.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveInsertDeleteLatticeVacancy</span></a> (implements etomica.util.<a href="etomica/util/IListener.html" title="interface in etomica.util">IListener</a>&lt;E&gt;)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveInsertDeleteVacancy.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveInsertDeleteVacancy</span></a> (implements etomica.util.<a href="etomica/util/IListener.html" title="interface in etomica.util">IListener</a>&lt;E&gt;)</li>
</ul>
</li>
<li class="circle">etomica.dcvgcmd.<a href="etomica/dcvgcmd/MyMCMove.html" title="class in etomica.dcvgcmd"><span class="typeNameLink">MyMCMove</span></a></li>
<li class="circle">etomica.modules.adsorption.<a href="etomica/modules/adsorption/MyMCMove.html" title="class in etomica.modules.adsorption"><span class="typeNameLink">MyMCMove</span></a></li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/MyMCMove.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">MyMCMove</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.multiharmonic.<a href="etomica/modules/multiharmonic/MCMoveMultiHarmonic.html" title="class in etomica.modules.multiharmonic"><span class="typeNameLink">MCMoveMultiHarmonic</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveSemigrand.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveSemigrand</span></a></li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MCMoveSpinCluster.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MCMoveSpinCluster</span></a></li>
<li class="circle">etomica.spin.ising.<a href="etomica/spin/ising/MCMoveSpinFlip.html" title="class in etomica.spin.ising"><span class="typeNameLink">MCMoveSpinFlip</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/MCMoveSwap.html" title="class in etomica.modules.glass"><span class="typeNameLink">MCMoveSwap</span></a></li>
</ul>
</li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/MCMoveGeometricClusterRestrictedGE.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">MCMoveGeometricClusterRestrictedGE</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMoleculeExchange.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveMoleculeExchange</span></a>
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMoleculeExchangeVLE.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveMoleculeExchangeVLE</span></a></li>
</ul>
</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveStep.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveStep</span></a> (implements etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveStepDependent.html" title="interface in etomica.integrator.mcmove">MCMoveStepDependent</a>)
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveVolumeExchange.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveVolumeExchange</span></a>
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveVolumeExchangeVLE.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveVolumeExchangeVLE</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.virial.paralleltempering.<a href="etomica/virial/paralleltempering/MCMoveSwapCluster.html" title="class in etomica.virial.paralleltempering"><span class="typeNameLink">MCMoveSwapCluster</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorPT.MCMoveSwap.html" title="interface in etomica.integrator">IntegratorPT.MCMoveSwap</a>)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveSwapConfiguration.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveSwapConfiguration</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorPT.MCMoveSwap.html" title="interface in etomica.integrator">IntegratorPT.MCMoveSwap</a>)</li>
</ul>
</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveEvent.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveEvent</span></a> (implements etomica.util.<a href="etomica/util/IEvent.html" title="interface in etomica.util">IEvent</a>)
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveTrialCompletedEvent.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveTrialCompletedEvent</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveTrialFailedEvent.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveTrialFailedEvent</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveTrialInitiatedEvent.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveTrialInitiatedEvent</span></a> (implements java.io.Serializable)</li>
</ul>
</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveIDBiasAction.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveIDBiasAction</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveInsertDeleteLatticeVacancy.AtomIteratorBruteForce.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveInsertDeleteLatticeVacancy.AtomIteratorBruteForce</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorAtomDependent.html" title="interface in etomica.atom.iterator">AtomIteratorAtomDependent</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveInsertDeleteLatticeVacancy.AtomIteratorNbr.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveInsertDeleteLatticeVacancy.AtomIteratorNbr</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorAtomDependent.html" title="interface in etomica.atom.iterator">AtomIteratorAtomDependent</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveInsertDeleteLatticeVacancy.AtomIteratorNbrCell.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveInsertDeleteLatticeVacancy.AtomIteratorNbrCell</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorAtomDependent.html" title="interface in etomica.atom.iterator">AtomIteratorAtomDependent</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>)</li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/MCMoveListenerRGE.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">MCMoveListenerRGE</span></a> (implements etomica.util.<a href="etomica/util/IListener.html" title="interface in etomica.util">IListener</a>&lt;E&gt;)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveManager.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveManager</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveOverlapListener.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveOverlapListener</span></a> (implements etomica.util.<a href="etomica/util/IListener.html" title="interface in etomica.util">IListener</a>&lt;E&gt;)</li>
<li class="circle">etomica.virial.paralleltempering.<a href="etomica/virial/paralleltempering/MCMoveSwapCluster.SwapFactory.html" title="class in etomica.virial.paralleltempering"><span class="typeNameLink">MCMoveSwapCluster.SwapFactory</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorPT.MCMoveSwapFactory.html" title="interface in etomica.integrator">IntegratorPT.MCMoveSwapFactory</a>, java.io.Serializable)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveSwapConfiguration.SwapFactory.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveSwapConfiguration.SwapFactory</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorPT.MCMoveSwapFactory.html" title="interface in etomica.integrator">IntegratorPT.MCMoveSwapFactory</a>, java.io.Serializable)</li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveTracker.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveTracker</span></a>
<ul>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveStepTracker.html" title="class in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveStepTracker</span></a></li>
</ul>
</li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveVolumeAssociated.Agent.html" title="class in etomica.association"><span class="typeNameLink">MCMoveVolumeAssociated.Agent</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/MCMoveVolumeAssociatedMolecule.Agent.html" title="class in etomica.association"><span class="typeNameLink">MCMoveVolumeAssociatedMolecule.Agent</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Measure.html" title="class in org.jmol.util"><span class="typeNameLink">Measure</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/MeshSurface.html" title="class in org.jmol.util"><span class="typeNameLink">MeshSurface</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Messages.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">Messages</span></a></li>
<li class="circle">etomica.graph.model.impl.<a href="etomica/graph/model/impl/MetadataImpl.html" title="class in etomica.graph.model.impl"><span class="typeNameLink">MetadataImpl</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/Metadata.html" title="interface in etomica.graph.model">Metadata</a>)</li>
<li class="circle">javax.swing.plaf.metal.MetalTheme
<ul>
<li class="circle">javax.swing.plaf.metal.DefaultMetalTheme
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/EtomicaTheme.html" title="class in etomica.graphics"><span class="typeNameLink">EtomicaTheme</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterAtomicDisplacement.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterAtomicDisplacement</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterBoltzmann.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterBoltzmann</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterBoltzmann.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterBoltzmann</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterBoltzmannHarmonic.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterBoltzmannHarmonic</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterBoltzmannHTTP.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterBoltzmannHTTP</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterBoltzmannRotPerturb.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterBoltzmannRotPerturb</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterBoltzmannTarget.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterBoltzmannTarget</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/MeterBondLength.html" title="class in etomica.starpolymer"><span class="typeNameLink">MeterBondLength</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/MeterCavityMapped.html" title="class in etomica.cavity"><span class="typeNameLink">MeterCavityMapped</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/MeterChainLength.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">MeterChainLength</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/MeterChainLength.AtomTag.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">MeterChainLength.AtomTag</span></a></li>
<li class="circle">etomica.modules.nucleation.<a href="etomica/modules/nucleation/MeterClusterSizes.html" title="class in etomica.modules.nucleation"><span class="typeNameLink">MeterClusterSizes</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/MeterCorrelation.html" title="class in etomica.modules.glass"><span class="typeNameLink">MeterCorrelation</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/MeterCorrelationSelf.html" title="class in etomica.modules.glass"><span class="typeNameLink">MeterCorrelationSelf</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterDADB.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterDADB</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterDDP.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterDDP</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/MeterDeformation.html" title="class in etomica.modules.droplet"><span class="typeNameLink">MeterDeformation</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.metastable.<a href="etomica/metastable/MeterDensityDistribution.html" title="class in etomica.metastable"><span class="typeNameLink">MeterDensityDistribution</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterDihedralAngle.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterDihedralAngle</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.reactionequilibrium.<a href="etomica/modules/reactionequilibrium/MeterDimerFraction.html" title="class in etomica.modules.reactionequilibrium"><span class="typeNameLink">MeterDimerFraction</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterDipoleMoment.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterDipoleMoment</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterDipoleMoment.ForceTorque.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterDipoleMoment.ForceTorque</span></a> (implements etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator">Integrator.Forcible</a>, etomica.integrator.<a href="etomica/integrator/Integrator.Torquable.html" title="interface in etomica.integrator">Integrator.Torquable</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterDipoleSumSquaredMappedAverage.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterDipoleSumSquaredMappedAverage</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterDirectSamplingHarmonic.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterDirectSamplingHarmonic</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterDirectSamplingTarget.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterDirectSamplingTarget</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterDP.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterDP</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterEnergyMeanField.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterEnergyMeanField</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterEnergyMeanField.PotentialCalculationCSsum.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterEnergyMeanField.PotentialCalculationCSsum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/MeterEnthalpyVolume.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">MeterEnthalpyVolume</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/MeterFlux.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">MeterFlux</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/MeterGs.html" title="class in etomica.modules.glass"><span class="typeNameLink">MeterGs</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass">ConfigurationStorage.ConfigurationStorageListener</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterHarmonicSingleEnergy.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterHarmonicSingleEnergy</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterHyperVirial.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterHyperVirial</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveraging.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveraging</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveraging3Pair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveraging3Pair</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingCorrelation.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingCorrelation</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingCorrelation.CorrelationAgent.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingCorrelation.CorrelationAgent</span></a> (implements etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator">Integrator.Forcible</a>, etomica.integrator.<a href="etomica/integrator/Integrator.Torquable.html" title="interface in etomica.integrator">Integrator.Torquable</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingCV.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingCV</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingFreeEnergy.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingFreeEnergy</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingPair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingPair</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingPairExcess.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingPairExcess</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingSum.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingSum</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingSum.MoleculeAgent.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingSum.MoleculeAgent</span></a> (implements etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator">Integrator.Forcible</a>, etomica.integrator.<a href="etomica/integrator/Integrator.Torquable.html" title="interface in etomica.integrator">Integrator.Torquable</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingVSum.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingVSum</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingVSum3Pair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingVSum3Pair</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMappedAveragingVSumPair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMappedAveragingVSumPair</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.mappedRdf.<a href="etomica/mappedRdf/MeterMappedRdf.html" title="class in etomica.mappedRdf"><span class="typeNameLink">MeterMappedRdf</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.mbar.<a href="etomica/modules/multiharmonic/mbar/MeterMBAR.html" title="class in etomica.modules.multiharmonic.mbar"><span class="typeNameLink">MeterMBAR</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMeanField.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMeanField</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MeterMeanField.ForceTorque.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MeterMeanField.ForceTorque</span></a> (implements etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator">Integrator.Forcible</a>, etomica.integrator.<a href="etomica/integrator/Integrator.Torquable.html" title="interface in etomica.integrator">Integrator.Torquable</a>)</li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/MeterMeanForce.html" title="class in etomica.mappedvirial"><span class="typeNameLink">MeterMeanForce</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterMomentumCOM.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterMomentumCOM</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterNormalizedCoord.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterNormalizedCoord</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterNormalizedCoordBeta.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterNormalizedCoordBeta</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterNormalMode.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterNormalMode</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.interfacial.<a href="etomica/modules/interfacial/MeterOrientation.html" title="class in etomica.modules.interfacial"><span class="typeNameLink">MeterOrientation</span></a> (implements etomica.data.<a href="etomica/data/DataSourceMolecular.html" title="interface in etomica.data">DataSourceMolecular</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterOrientationDistribution.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterOrientationDistribution</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/MeterOsmoticPressure.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">MeterOsmoticPressure</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.overlap.<a href="etomica/overlap/MeterOverlap.html" title="class in etomica.overlap"><span class="typeNameLink">MeterOverlap</span></a> (implements etomica.overlap.<a href="etomica/overlap/AlphaSource.html" title="interface in etomica.overlap">AlphaSource</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterOverlapSwitch.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterOverlapSwitch</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterPlaneSlip.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterPlaneSlip</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPositionCOM.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPositionCOM</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/MeterPotentialEnergyCutoff.html" title="class in etomica.liquidLJ"><span class="typeNameLink">MeterPotentialEnergyCutoff</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPressureByVolumeChange.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPressureByVolumeChange</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPressureByVolumeChange.DataSourceExp.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPressureByVolumeChange.DataSourceExp</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPressureHardTensor.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPressureHardTensor</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPressureTensor.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPressureTensor</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterPressureTensorFromIntegrator.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterPressureTensorFromIntegrator</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterProfile.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterProfile</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterProfileByAtoms.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterProfileByAtoms</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterProfileByVolume.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterProfileByVolume</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.modules.adsorption.<a href="etomica/modules/adsorption/MeterProfileByVolumeAdsorption.html" title="class in etomica.modules.adsorption"><span class="typeNameLink">MeterProfileByVolumeAdsorption</span></a></li>
</ul>
</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/MeterPU.html" title="class in etomica.liquidLJ"><span class="typeNameLink">MeterPU</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/MeterPUCut.html" title="class in etomica.liquidLJ"><span class="typeNameLink">MeterPUCut</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/MeterPUCutLS.html" title="class in etomica.liquidLJ"><span class="typeNameLink">MeterPUCutLS</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterRDF.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterRDF</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)
<ul>
<li class="circle">etomica.cavity.<a href="etomica/cavity/MeterCavity.html" title="class in etomica.cavity"><span class="typeNameLink">MeterCavity</span></a></li>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/MeterRDFCylinder.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">MeterRDFCylinder</span></a></li>
</ul>
</li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/MeterRDFMapped.html" title="class in etomica.cavity"><span class="typeNameLink">MeterRDFMapped</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator">IntegratorHard.CollisionListener</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterRDFPC.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterRDFPC</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterRotationDistributionGroup.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterRotationDistributionGroup</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterSamplingHarmonic.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterSamplingHarmonic</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterSamplingTarget.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterSamplingTarget</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterSamplingWeight.html" title="class in etomica.virial"><span class="typeNameLink">MeterSamplingWeight</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterSolidDA.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterSolidDA</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterSolidDACut.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterSolidDACut</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterSolidMirror.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterSolidMirror</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterSolidProps.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterSolidProps</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterSolidPropsLJ.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterSolidPropsLJ</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterStructureFactor.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterStructureFactor</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterStructureFactor.AtomSignalSourceByType.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterStructureFactor.AtomSignalSourceByType</span></a> (implements etomica.data.meter.<a href="etomica/data/meter/MeterStructureFactor.AtomSignalSource.html" title="interface in etomica.data.meter">MeterStructureFactor.AtomSignalSource</a>)
<ul>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomSignalMobility.html" title="class in etomica.modules.glass"><span class="typeNameLink">AtomSignalMobility</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomSignalMotion.html" title="class in etomica.modules.glass"><span class="typeNameLink">AtomSignalMotion</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/MeterStructureFactorStress3.html" title="class in etomica.modules.glass"><span class="typeNameLink">MeterStructureFactorStress3</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterTargetRPMolecule.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterTargetRPMolecule</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterTargetTP.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterTargetTP</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/MeterTargetTPMolecule.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">MeterTargetTPMolecule</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterTensorVelocity.html" title="class in etomica.data.meter"><span class="typeNameLink">MeterTensorVelocity</span></a> (implements etomica.data.<a href="etomica/data/DataSourceAtomic.html" title="interface in etomica.data">DataSourceAtomic</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/MeterTilt.html" title="class in etomica.modules.sam"><span class="typeNameLink">MeterTilt</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterTilt.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterTilt</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterTiltHistogram.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterTiltHistogram</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterTiltRotation.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterTiltRotation</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterTiltRotationHistogram.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterTiltRotationHistogram</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterTiltRotationStdev.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterTiltRotationStdev</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.umbrella.<a href="etomica/modules/multiharmonic/umbrella/MeterUmbrella.html" title="class in etomica.modules.multiharmonic.umbrella"><span class="typeNameLink">MeterUmbrella</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirial.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirial</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialBD.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialBD</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialBDBin.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialBDBin</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialBDBinMultiThreaded.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialBDBinMultiThreaded</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialBDBinMultiThreaded.MyData.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialBDBinMultiThreaded.MyData</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialBinMultiThreaded.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialBinMultiThreaded</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialBinMultiThreaded.MyData.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialBinMultiThreaded.MyData</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialEBinMultiThreaded.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialEBinMultiThreaded</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialEBinMultiThreaded.MyData.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialEBinMultiThreaded.MyData</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialEBinMultiThreaded.MyDataCov.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialEBinMultiThreaded.MyDataCov</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalField.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalField</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldConfined.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldConfined</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldOverlapConfined.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldOverlapConfined</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWeightSumWall.DataSourceClusterWall.html" title="interface in etomica.virial">ClusterWeightSumWall.DataSourceClusterWall</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldOverlapConfined.RangeComparator.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldOverlapConfined.RangeComparator</span></a> (implements java.util.Comparator&lt;T&gt;)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldOverlapConfinedRho.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldOverlapConfinedRho</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWeightSumWall.DataSourceClusterWall.html" title="interface in etomica.virial">ClusterWeightSumWall.DataSourceClusterWall</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldOverlapConfinedSW.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldOverlapConfinedSW</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWeightSumWall.DataSourceClusterWall.html" title="interface in etomica.virial">ClusterWeightSumWall.DataSourceClusterWall</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldOverlapRho.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldOverlapRho</span></a> (implements etomica.virial.<a href="etomica/virial/ClusterWeightSumWall.DataSourceClusterWall.html" title="interface in etomica.virial">ClusterWeightSumWall.DataSourceClusterWall</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldRho.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldRho</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldSW.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldSW</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialExternalFieldSW.Near.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialExternalFieldSW.Near</span></a> (implements java.lang.Comparable&lt;T&gt;)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialIC.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialIC</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MeterVirialSWWE.html" title="class in etomica.virial"><span class="typeNameLink">MeterVirialSWWE</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/MeterWallForce.PotentialCalculationWallForce.html" title="class in etomica.interfacial"><span class="typeNameLink">MeterWallForce.PotentialCalculationWallForce</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/MeterWidomCavity.html" title="class in etomica.cavity"><span class="typeNameLink">MeterWidomCavity</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/MeterWidomInsertionCorrection.html" title="class in etomica.liquidLJ"><span class="typeNameLink">MeterWidomInsertionCorrection</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkBennetHarmonic.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkBennetHarmonic</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkBennetTarget.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkBennetTarget</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkHarmonicBennet.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkHarmonicBennet</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkHarmonicPhaseSpace.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkHarmonicPhaseSpace</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkHarmonicTargetandReweighting.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkHarmonicTargetandReweighting</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkHarmonicUmbrella.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkHarmonicUmbrella</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkTargetBennet.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkTargetBennet</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkTargetHarmonicandReweighting.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkTargetHarmonicandReweighting</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkTargetPhaseSpace.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkTargetPhaseSpace</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkTargetUmbrella.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkTargetUmbrella</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkUmbrellaHarmonic.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkUmbrellaHarmonic</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/MeterWorkUmbrellaTarget.html" title="class in etomica.normalmode"><span class="typeNameLink">MeterWorkUmbrellaTarget</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/MethanolPotentialHelper.html" title="class in etomica.models.rowley"><span class="typeNameLink">MethanolPotentialHelper</span></a></li>
<li class="circle">etomica.models.traPPE.<a href="etomica/models/traPPE/MethanolPotentialHelper.html" title="class in etomica.models.traPPE"><span class="typeNameLink">MethanolPotentialHelper</span></a></li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/MethanolRouteParams.html" title="class in etomica.models.rowley"><span class="typeNameLink">MethanolRouteParams</span></a></li>
<li class="circle">etomica.models.clathrates.<a href="etomica/models/clathrates/MinimizationTIP4P.ChargeAgentSourceRPM.html" title="class in etomica.models.clathrates"><span class="typeNameLink">MinimizationTIP4P.ChargeAgentSourceRPM</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelAlertMsgDialog.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelAlertMsgDialog</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelAlkaneLengthSelection.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelAlkaneLengthSelection</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelSelectedSpecies.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelSelectedSpecies</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelSimulationConstructor.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelSimulationConstructor</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelSimulationEnvironment.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelSimulationEnvironment</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelSpeciesSelection.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelSpeciesSelection</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/ModelTemperatureAndSteps.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">ModelTemperatureAndSteps</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/ModifierCells3D.html" title="class in etomica.normalmode"><span class="typeNameLink">ModifierCells3D</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>, java.io.Serializable)</li>
<li class="circle">etomica.modifier.<a href="etomica/modifier/ModifierGeneral.html" title="class in etomica.modifier"><span class="typeNameLink">ModifierGeneral</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.modifier.<a href="etomica/modifier/ModifierFunctionWrapper.html" title="class in etomica.modifier"><span class="typeNameLink">ModifierFunctionWrapper</span></a></li>
</ul>
</li>
<li class="circle">etomica.modifier.<a href="etomica/modifier/ModifierNMolecule.html" title="class in etomica.modifier"><span class="typeNameLink">ModifierNMolecule</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/ModifierPistonPressure.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">ModifierPistonPressure</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.adsorption.<a href="etomica/modules/adsorption/ModifierPMu.html" title="class in etomica.modules.adsorption"><span class="typeNameLink">ModifierPMu</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/ModifierTPI.html" title="class in etomica.virial.simulations"><span class="typeNameLink">ModifierTPI</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/ModifierXCells2D.html" title="class in etomica.normalmode"><span class="typeNameLink">ModifierXCells2D</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>, java.io.Serializable)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/ModifierYCells2D.html" title="class in etomica.normalmode"><span class="typeNameLink">ModifierYCells2D</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>, java.io.Serializable)</li>
<li class="circle">etomica.modifier.<a href="etomica/modifier/ModifyAction.html" title="class in etomica.modifier"><span class="typeNameLink">ModifyAction</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.modifier.<a href="etomica/modifier/ModifyBooleanAction.html" title="class in etomica.modifier"><span class="typeNameLink">ModifyBooleanAction</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModel2CLJQ_SpeciesCO2.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModel2CLJQ_SpeciesCO2</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModel2CLJQ_SpeciesEthane.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModel2CLJQ_SpeciesEthane</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModel2CLJQ_SpeciesLJ.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModel2CLJQ_SpeciesLJ</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModelEMP2_SpeciesCO2.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModelEMP2_SpeciesCO2</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModelExp6_SpeciesAlkane.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModelExp6_SpeciesAlkane</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModelLJ_SpeciesLJ.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModelLJ_SpeciesLJ</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModelLJQ_SpeciesLJ.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModelLJQ_SpeciesLJ</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModelSKS_SpeciesAlkane.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModelSKS_SpeciesAlkane</span></a> (implements etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModelSPCE_SpeciesH2O.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModelSPCE_SpeciesH2O</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModelTRAPPE_SpeciesAlkane.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModelTRAPPE_SpeciesAlkane</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/MolecularModelTrappe_SpeciesCO2.html" title="class in etomica.virial.GUI.models"><span class="typeNameLink">MolecularModelTrappe_SpeciesCO2</span></a> (implements java.lang.Cloneable, etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models">IMolecularModel_SpeciesFactory</a>)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/Molecule.html" title="class in etomica.molecule"><span class="typeNameLink">Molecule</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMolecule.html" title="interface in etomica.molecule">IMolecule</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeOriented.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculeOriented</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculeOriented.html" title="interface in etomica.molecule">IMoleculeOriented</a>)
<ul>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeOrientedDynamic.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculeOrientedDynamic</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculeOrientedKinetic.html" title="interface in etomica.molecule">IMoleculeOrientedKinetic</a>)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MoleculeActionRelaxWater3P.html" title="class in etomica.virial"><span class="typeNameLink">MoleculeActionRelaxWater3P</span></a> (implements etomica.action.<a href="etomica/action/MoleculeAction.html" title="interface in etomica.action">MoleculeAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/MoleculeActionTranslateTo.html" title="class in etomica.action"><span class="typeNameLink">MoleculeActionTranslateTo</span></a> (implements etomica.action.<a href="etomica/action/MoleculeAction.html" title="interface in etomica.action">MoleculeAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/MoleculeAgent.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">MoleculeAgent</span></a> (implements etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator">Integrator.Forcible</a>, etomica.integrator.<a href="etomica/integrator/Integrator.Torquable.html" title="interface in etomica.integrator">Integrator.Torquable</a>)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculeAgentManager</span></a>&lt;E&gt; (implements etomica.box.<a href="etomica/box/BoxEventListener.html" title="interface in etomica.box">BoxEventListener</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/MoleculeChildAtomAction.html" title="class in etomica.action"><span class="typeNameLink">MoleculeChildAtomAction</span></a> (implements etomica.action.<a href="etomica/action/MoleculeAction.html" title="interface in etomica.action">MoleculeAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorAll.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorAll</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorPDT</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorArrayListSimple.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorArrayListSimple</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIterator.html" title="interface in etomica.molecule.iterator">MoleculeIterator</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorAllMolecules.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorAllMolecules</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorBoxDependent.html" title="interface in etomica.molecule.iterator">MoleculeIteratorBoxDependent</a>)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorArrayList.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorArrayList</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorMoleculeDependent.html" title="interface in etomica.molecule.iterator">MoleculeIteratorMoleculeDependent</a>)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorMolecule.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorMolecule</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorBoxDependent.html" title="interface in etomica.molecule.iterator">MoleculeIteratorBoxDependent</a>, etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorPDT</a>)</li>
</ul>
</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorSinglet.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorSinglet</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIterator.html" title="interface in etomica.molecule.iterator">MoleculeIterator</a>, etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorMoleculeDependent.html" title="interface in etomica.molecule.iterator">MoleculeIteratorMoleculeDependent</a>, java.io.Serializable)</li>
<li class="circle">etomica.meta.properties.<a href="etomica/meta/properties/MoleculeListProperty.html" title="class in etomica.meta.properties"><span class="typeNameLink">MoleculeListProperty</span></a> (implements etomica.meta.properties.<a href="etomica/meta/properties/Property.html" title="interface in etomica.meta.properties">Property</a>)</li>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/MoleculeNeighborLists.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">MoleculeNeighborLists</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculePositionCOM.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculePositionCOM</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculePositionDefinition.html" title="interface in etomica.molecule">IMoleculePositionDefinition</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculePositionFirstAtom.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculePositionFirstAtom</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculePositionDefinition.html" title="interface in etomica.molecule">IMoleculePositionDefinition</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculePositionGeometricCenter.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculePositionGeometricCenter</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculePositionDefinition.html" title="interface in etomica.molecule">IMoleculePositionDefinition</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculePositionGeometricCenterAlkaneEH.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculePositionGeometricCenterAlkaneEH</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculePositionDefinition.html" title="interface in etomica.molecule">IMoleculePositionDefinition</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculePositionGeometricCenterPBC.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculePositionGeometricCenterPBC</span></a> (implements etomica.molecule.<a href="etomica/molecule/IMoleculePositionDefinition.html" title="interface in etomica.molecule">IMoleculePositionDefinition</a>, java.io.Serializable)</li>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/MoleculePotentialList.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">MoleculePotentialList</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.association.<a href="etomica/association/MoleculeSourceRandomDimer.html" title="class in etomica.association"><span class="typeNameLink">MoleculeSourceRandomDimer</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeSource.html" title="interface in etomica.molecule">MoleculeSource</a>)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeSourceRandomMolecule.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculeSourceRandomMolecule</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeSource.html" title="interface in etomica.molecule">MoleculeSource</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.association.<a href="etomica/association/MoleculeSourceRandomMonomer.html" title="class in etomica.association"><span class="typeNameLink">MoleculeSourceRandomMonomer</span></a></li>
</ul>
</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeToMoleculeListSpecies.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculeToMoleculeListSpecies</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeToIndex.html" title="interface in etomica.molecule">MoleculeToIndex</a>, etomica.molecule.<a href="etomica/molecule/MoleculeToMoleculeList.html" title="interface in etomica.molecule">MoleculeToMoleculeList</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeToMoleculeSetFixed.html" title="class in etomica.molecule"><span class="typeNameLink">MoleculeToMoleculeSetFixed</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeToIndex.html" title="interface in etomica.molecule">MoleculeToIndex</a>, etomica.molecule.<a href="etomica/molecule/MoleculeToMoleculeList.html" title="interface in etomica.molecule">MoleculeToMoleculeList</a>, java.io.Serializable)</li>
<li class="circle">java.awt.event.MouseAdapter (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DisplayPlot.PopupListener.html" title="class in etomica.graphics"><span class="typeNameLink">DisplayPlot.PopupListener</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/Mpi1ACell.html" title="class in etomica.nbr.cell.molecule"><span class="typeNameLink">Mpi1ACell</span></a> (implements etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/MoleculesetIteratorCellular.html" title="interface in etomica.nbr.cell.molecule">MoleculesetIteratorCellular</a>, etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorPDT</a>, java.io.Serializable)</li>
<li class="circle">etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/MpiAACell.html" title="class in etomica.nbr.cell.molecule"><span class="typeNameLink">MpiAACell</span></a> (implements etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/MoleculesetIteratorCellular.html" title="interface in etomica.nbr.cell.molecule">MoleculesetIteratorCellular</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiInnerFixed.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiInnerFixed</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIterator.html" title="interface in etomica.molecule.iterator">MoleculesetIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiInnerVariable.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiInnerVariable</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIterator.html" title="interface in etomica.molecule.iterator">MoleculesetIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiInterArrayList.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiInterArrayList</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIterator.html" title="interface in etomica.molecule.iterator">MoleculesetIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiInterspecies1A.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiInterspecies1A</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorPDT</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiInterspeciesAA.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiInterspeciesAA</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorBoxDependent.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorBoxDependent</a>)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiIntraArrayList.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiIntraArrayList</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIterator.html" title="interface in etomica.molecule.iterator">MoleculesetIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiIntraspecies1A.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiIntraspecies1A</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorPDT</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiIntraspeciesAA.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiIntraspeciesAA</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorBoxDependent.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorBoxDependent</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MpiMolecule.html" title="class in etomica.molecule.iterator"><span class="typeNameLink">MpiMolecule</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorPDT</a>, java.io.Serializable)</li>
<li class="circle">etomica.zeolite.<a href="etomica/zeolite/MSDCoordWriter.html" title="class in etomica.zeolite"><span class="typeNameLink">MSDCoordWriter</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.zeolite.<a href="etomica/zeolite/MSDCoordWriter.AfterPBC.html" title="class in etomica.zeolite"><span class="typeNameLink">MSDCoordWriter.AfterPBC</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.zeolite.<a href="etomica/zeolite/MSDProcessor.html" title="class in etomica.zeolite"><span class="typeNameLink">MSDProcessor</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MuFGeneral.html" title="class in etomica.virial"><span class="typeNameLink">MuFGeneral</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/MuGeneral.html" title="class in etomica.virial"><span class="typeNameLink">MuGeneral</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>, java.io.Serializable)</li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/MuGraphic.ModifierAtomDiameter.html" title="class in etomica.modules.mu"><span class="typeNameLink">MuGraphic.ModifierAtomDiameter</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/MuGraphic.ModifierEpsilon.html" title="class in etomica.modules.mu"><span class="typeNameLink">MuGraphic.ModifierEpsilon</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/MuGraphic.ModifierLambda.html" title="class in etomica.modules.mu"><span class="typeNameLink">MuGraphic.ModifierLambda</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Mul.html" title="class in etomica.graph.operations"><span class="typeNameLink">Mul</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Mul.MulParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">Mul.MulParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)
<ul>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MulFlexible.MulFlexibleParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">MulFlexible.MulFlexibleParameters</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MulFlexible.html" title="class in etomica.graph.operations"><span class="typeNameLink">MulFlexible</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MulScalar.html" title="class in etomica.graph.operations"><span class="typeNameLink">MulScalar</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MulScalarParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">MulScalarParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSinkReweightedDeltaU.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSinkReweightedDeltaU</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSourceAlphaAlpha.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceAlphaAlpha</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.umbrella.<a href="etomica/modules/multiharmonic/umbrella/MultiharmonicGraphicMC.DataSourceAlphaAlpha.html" title="class in etomica.modules.multiharmonic.umbrella"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceAlphaAlpha</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.mbar.<a href="etomica/modules/multiharmonic/mbar/MultiharmonicGraphicMC.DataSourceAlphaChi.html" title="class in etomica.modules.multiharmonic.mbar"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceAlphaChi</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSourceAlphaChi.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceAlphaChi</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.umbrella.<a href="etomica/modules/multiharmonic/umbrella/MultiharmonicGraphicMC.DataSourceAlphaChi.html" title="class in etomica.modules.multiharmonic.umbrella"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceAlphaChi</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSourceAlphaFE.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceAlphaFE</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.multiharmonic.overlap.<a href="etomica/modules/multiharmonic/overlap/MultiharmonicGraphicMC.DataSourceFunctionRaw.html" title="class in etomica.modules.multiharmonic.overlap"><span class="typeNameLink">MultiharmonicGraphicMC.DataSourceFunctionRaw</span></a> (implements etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>, etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/MulUnion.html" title="class in etomica.graph.operations"><span class="typeNameLink">MulUnion</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.BondInteractionTypeToggler.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.BondInteractionTypeToggler</span></a> (implements java.awt.event.ItemListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.BondTypeToggler.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.BondTypeToggler</span></a> (implements java.awt.event.ItemListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.ComponentEventMyPanel.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.ComponentEventMyPanel</span></a> (implements java.awt.event.ComponentListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.ConnectedToggler.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.ConnectedToggler</span></a> (implements java.awt.event.ItemListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.GraphicsToggler.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.GraphicsToggler</span></a> (implements java.awt.event.ItemListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.MouseEventClusterPanel.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.MouseEventClusterPanel</span></a> (implements java.awt.event.MouseListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.NumbersToggler.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.NumbersToggler</span></a> (implements java.awt.event.ItemListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.PointsToggler.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.PointsToggler</span></a> (implements java.awt.event.ItemListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.ReeHooverToggler.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.ReeHooverToggler</span></a> (implements java.awt.event.ItemListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.Starter.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.Starter</span></a> (implements java.awt.event.ActionListener)</li>
<li class="circle">etomica.modules.clustergenerator.<a href="etomica/modules/clustergenerator/MyApplet.Stopper.html" title="class in etomica.modules.clustergenerator"><span class="typeNameLink">MyApplet.Stopper</span></a> (implements java.awt.event.ActionListener)</li>
<li class="circle">etomica.veos.<a href="etomica/veos/MyBigDecimal.html" title="class in etomica.veos"><span class="typeNameLink">MyBigDecimal</span></a> (implements etomica.veos.<a href="etomica/veos/IBigValue.html" title="interface in etomica.veos">IBigValue</a>)</li>
<li class="circle">etomica.eigenstuff.<a href="etomica/eigenstuff/MyEigenvalueDecomposition.html" title="class in etomica.eigenstuff"><span class="typeNameLink">MyEigenvalueDecomposition</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/NCopy.html" title="class in etomica.graph.operations"><span class="typeNameLink">NCopy</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/NeighborCellManager.html" title="class in etomica.nbr.cell"><span class="typeNameLink">NeighborCellManager</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.space.<a href="etomica/space/BoundaryEventListener.html" title="interface in etomica.space">BoundaryEventListener</a>, etomica.box.<a href="etomica/box/BoxCellManager.html" title="interface in etomica.box">BoxCellManager</a>)</li>
<li class="circle">etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/NeighborCellManagerMolecular.html" title="class in etomica.nbr.cell.molecule"><span class="typeNameLink">NeighborCellManagerMolecular</span></a> (implements etomica.space.<a href="etomica/space/BoundaryEventListener.html" title="interface in etomica.space">BoundaryEventListener</a>, etomica.box.<a href="etomica/box/BoxCellManager.html" title="interface in etomica.box">BoxCellManager</a>, etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, java.io.Serializable)
<ul>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/NeighborCellManagerListMolecular.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">NeighborCellManagerListMolecular</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/NeighborIteratorCell.html" title="class in etomica.nbr.cell"><span class="typeNameLink">NeighborIteratorCell</span></a> (implements etomica.nbr.<a href="etomica/nbr/NeighborIterator.html" title="interface in etomica.nbr">NeighborIterator</a>)</li>
<li class="circle">etomica.nbr.site.<a href="etomica/nbr/site/NeighborIteratorSite.html" title="class in etomica.nbr.site"><span class="typeNameLink">NeighborIteratorSite</span></a> (implements etomica.nbr.<a href="etomica/nbr/NeighborIterator.html" title="interface in etomica.nbr">NeighborIterator</a>)</li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/NeighborListAgentSource.html" title="class in etomica.nbr.list"><span class="typeNameLink">NeighborListAgentSource</span></a> (implements etomica.box.<a href="etomica/box/BoxAgentManager.BoxAgentSource.html" title="interface in etomica.box">BoxAgentManager.BoxAgentSource</a>&lt;E&gt;)
<ul>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/NeighborListManagerColloid.NeighborListAgentSourceColloid.html" title="class in etomica.modules.colloid"><span class="typeNameLink">NeighborListManagerColloid.NeighborListAgentSourceColloid</span></a></li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/NeighborListManagerSlanty.NeighborListSlantyAgentSource.html" title="class in etomica.nbr.list"><span class="typeNameLink">NeighborListManagerSlanty.NeighborListSlantyAgentSource</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/NeighborListEventManager.html" title="class in etomica.nbr.list"><span class="typeNameLink">NeighborListEventManager</span></a></li>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/NeighborListEventManagerMolecular.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">NeighborListEventManagerMolecular</span></a></li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/NeighborListManager.html" title="class in etomica.nbr.list"><span class="typeNameLink">NeighborListManager</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)
<ul>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/NeighborListManagerColloid.html" title="class in etomica.modules.colloid"><span class="typeNameLink">NeighborListManagerColloid</span></a></li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/NeighborListManagerSlanty.html" title="class in etomica.nbr.list"><span class="typeNameLink">NeighborListManagerSlanty</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/NeighborListManager.AtomPotential1ListSource.html" title="class in etomica.nbr.list"><span class="typeNameLink">NeighborListManager.AtomPotential1ListSource</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/NeighborListManagerMolecular.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">NeighborListManagerMolecular</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>, etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, java.io.Serializable)
<ul>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/NeighborListManagerSlantyMolecular.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">NeighborListManagerSlantyMolecular</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/NeighborListManagerMolecular.MoleculePotential1ListSource.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">NeighborListManagerMolecular.MoleculePotential1ListSource</span></a> (implements etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule">MoleculeAgentManager.MoleculeAgentSource</a>&lt;E&gt;, java.io.Serializable)</li>
<li class="circle">etomica.nbr.site.<a href="etomica/nbr/site/NeighborSiteManager.html" title="class in etomica.nbr.site"><span class="typeNameLink">NeighborSiteManager</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.box.<a href="etomica/box/BoxCellManager.html" title="interface in etomica.box">BoxCellManager</a>)</li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/NewtonMinimization.html" title="class in etomica.math.numerical"><span class="typeNameLink">NewtonMinimization</span></a></li>
<li class="circle">etomica.graph.model.impl.<a href="etomica/graph/model/impl/NodeImpl.html" title="class in etomica.graph.model.impl"><span class="typeNameLink">NodeImpl</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/Node.html" title="interface in etomica.graph.model">Node</a>)</li>
<li class="circle">etomica.graph.isomorphism.<a href="etomica/graph/isomorphism/NodePair.html" title="class in etomica.graph.isomorphism"><span class="typeNameLink">NodePair</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModeEigenGetter.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModeEigenGetter</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModes1DHR.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModes1DHR</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/NormalModes.html" title="interface in etomica.normalmode">NormalModes</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModes2D.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModes2D</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/NormalModes.html" title="interface in etomica.normalmode">NormalModes</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModes3D.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModes3D</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/NormalModes.html" title="interface in etomica.normalmode">NormalModes</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModesFromFile.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModesFromFile</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/NormalModes.html" title="interface in etomica.normalmode">NormalModes</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModesMolecular.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModesMolecular</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/NormalModes.html" title="interface in etomica.normalmode">NormalModes</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModesPotential.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModesPotential</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/NormalModes.html" title="interface in etomica.normalmode">NormalModes</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModesSoftSpherical.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModesSoftSpherical</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/NormalModes.html" title="interface in etomica.normalmode">NormalModes</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModesVariable.html" title="class in etomica.normalmode"><span class="typeNameLink">NormalModesVariable</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Normix.html" title="class in org.jmol.util"><span class="typeNameLink">Normix</span></a></li>
<li class="circle">etomica.modules.nucleation.<a href="etomica/modules/nucleation/NucleationGraphic.ModifierDensity.html" title="class in etomica.modules.nucleation"><span class="typeNameLink">NucleationGraphic.ModifierDensity</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/NumFieldNodes.html" title="class in etomica.graph.property"><span class="typeNameLink">NumFieldNodes</span></a></li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/NumRootNodes.html" title="class in etomica.graph.property"><span class="typeNameLink">NumRootNodes</span></a></li>
<li class="circle">etomica.space1d.<a href="etomica/space1d/Orientation1D.html" title="class in etomica.space1d"><span class="typeNameLink">Orientation1D</span></a> (implements etomica.space.<a href="etomica/space/IOrientation.html" title="interface in etomica.space">IOrientation</a>)</li>
<li class="circle">etomica.space2d.<a href="etomica/space2d/Orientation2D.html" title="class in etomica.space2d"><span class="typeNameLink">Orientation2D</span></a> (implements etomica.space2d.<a href="etomica/space2d/IOrientation2D.html" title="interface in etomica.space2d">IOrientation2D</a>, java.io.Serializable)</li>
<li class="circle">etomica.space3d.<a href="etomica/space3d/Orientation3D.html" title="class in etomica.space3d"><span class="typeNameLink">Orientation3D</span></a> (implements etomica.space3d.<a href="etomica/space3d/IOrientation3D.html" title="interface in etomica.space3d">IOrientation3D</a>, java.io.Serializable)</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/OrientationCalcAtom.html" title="class in etomica.molecule"><span class="typeNameLink">OrientationCalcAtom</span></a> (implements etomica.molecule.<a href="etomica/molecule/OrientationCalc.html" title="interface in etomica.molecule">OrientationCalc</a>)</li>
<li class="circle">etomica.space3d.<a href="etomica/space3d/OrientationFull3D.html" title="class in etomica.space3d"><span class="typeNameLink">OrientationFull3D</span></a> (implements etomica.space3d.<a href="etomica/space3d/IOrientationFull3D.html" title="interface in etomica.space3d">IOrientationFull3D</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/OrnsteinZernike.html" title="class in etomica.virial"><span class="typeNameLink">OrnsteinZernike</span></a></li>
<li class="circle">etomica.modules.osmosis.<a href="etomica/modules/osmosis/Osmosis.InitializeMolecules.html" title="class in etomica.modules.osmosis"><span class="typeNameLink">Osmosis.InitializeMolecules</span></a></li>
<li class="circle">etomica.modules.osmosis.<a href="etomica/modules/osmosis/Osmosis.MyWall.html" title="class in etomica.modules.osmosis"><span class="typeNameLink">Osmosis.MyWall</span></a> (implements etomica.graphics.<a href="etomica/graphics/Drawable.html" title="interface in etomica.graphics">Drawable</a>)</li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/OverflowShift.html" title="class in etomica.graphics"><span class="typeNameLink">OverflowShift</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/P1ConstraintNbr.html" title="class in etomica.normalmode"><span class="typeNameLink">P1ConstraintNbr</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/P1ConstraintNbrHcp.html" title="class in etomica.normalmode"><span class="typeNameLink">P1ConstraintNbrHcp</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1HardBoundary.html" title="class in etomica.potential"><span class="typeNameLink">P1HardBoundary</span></a> (implements etomica.graphics.<a href="etomica/graphics/Drawable.html" title="interface in etomica.graphics">Drawable</a>, etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1HydrogenMielke.html" title="class in etomica.potential"><span class="typeNameLink">P1HydrogenMielke</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential">IPotential</a>, etomica.potential.<a href="etomica/potential/P1IntraMolecular.html" title="interface in etomica.potential">P1IntraMolecular</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P1HydrogenMielke.P1HydrogenMielkeAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P1HydrogenMielke.P1HydrogenMielkeAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>, etomica.potential.<a href="etomica/potential/P1IntraMolecular.html" title="interface in etomica.potential">P1IntraMolecular</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1HydrogenMielke.P2HydrogenMielkeAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P1HydrogenMielke.P2HydrogenMielkeAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/P1IntraLambda.html" title="class in etomica.virial"><span class="typeNameLink">P1IntraLambda</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>, etomica.potential.<a href="etomica/potential/P1IntraMolecular.html" title="interface in etomica.potential">P1IntraMolecular</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1IntraSimple.html" title="class in etomica.potential"><span class="typeNameLink">P1IntraSimple</span></a></li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/P1Sinusoidal.html" title="class in etomica.modules.sam"><span class="typeNameLink">P1Sinusoidal</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential">IPotential</a>, etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/P1Smash.html" title="class in etomica.modules.droplet"><span class="typeNameLink">P1Smash</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.modules.materialfracture.<a href="etomica/modules/materialfracture/P1Tension.html" title="class in etomica.modules.materialfracture"><span class="typeNameLink">P1Tension</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.modules.adsorption.<a href="etomica/modules/adsorption/P1Wall.html" title="class in etomica.modules.adsorption"><span class="typeNameLink">P1Wall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/P1Wall.html" title="class in etomica.modules.colloid"><span class="typeNameLink">P1Wall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/P2CO2H2OWheatley.html" title="class in etomica.models.co2"><span class="typeNameLink">P2CO2H2OWheatley</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialTorque.html" title="interface in etomica.potential">IPotentialTorque</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/P2CO2H2OWheatley.P2CO2H2OSC.html" title="class in etomica.models.co2"><span class="typeNameLink">P2CO2H2OWheatley.P2CO2H2OSC</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/P2CO2H2OWheatley.P2CO2H2OSCTI.html" title="class in etomica.models.co2"><span class="typeNameLink">P2CO2H2OWheatley.P2CO2H2OSCTI</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/P2CO2Hellmann.html" title="class in etomica.models.co2"><span class="typeNameLink">P2CO2Hellmann</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialTorque.html" title="interface in etomica.potential">IPotentialTorque</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/P2CO2Hellmann.P2CO2SC.html" title="class in etomica.models.co2"><span class="typeNameLink">P2CO2Hellmann.P2CO2SC</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2DiscreteFeynmanHibbs.html" title="class in etomica.potential"><span class="typeNameLink">P2DiscreteFeynmanHibbs</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2EffectiveFeynmanHibbs.html" title="class in etomica.potential"><span class="typeNameLink">P2EffectiveFeynmanHibbs</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardBondedList.BondArrayList.html" title="class in etomica.potential"><span class="typeNameLink">P2HardBondedList.BondArrayList</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardWrapper.html" title="class in etomica.potential"><span class="typeNameLink">P2HardWrapper</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HePCKLJS.P2HeQFH.html" title="class in etomica.potential"><span class="typeNameLink">P2HePCKLJS.P2HeQFH</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HePCKLJS.P2HeTI.html" title="class in etomica.potential"><span class="typeNameLink">P2HePCKLJS.P2HeTI</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HeSimplified.P2HeQFH.html" title="class in etomica.potential"><span class="typeNameLink">P2HeSimplified.P2HeQFH</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HeSimplified.P2HeTI.html" title="class in etomica.potential"><span class="typeNameLink">P2HeSimplified.P2HeTI</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenHinde.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenHinde</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential">IPotential</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenHinde.P2HydrogenHindeAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenHinde.P2HydrogenHindeAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenHinde.P2HydrogenHindeMolecular.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenHinde.P2HydrogenHindeMolecular</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenHindeAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenHindeAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenHindePatkowski.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenHindePatkowski</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential">IPotential</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenHindePatkowski.P2HydrogenHindePatkowskiAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenHindePatkowski.P2HydrogenHindePatkowskiAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenHindePatkowski.P2HydrogenHindePatkowskiMolecular.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenHindePatkowski.P2HydrogenHindePatkowskiMolecular</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential">IPotential</a>)</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenHindePatkowskiAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenHindePatkowskiAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenPatkowski.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenPatkowski</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential">IPotential</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenPatkowski.P2HydrogenPatkowskiAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenPatkowski.P2HydrogenPatkowskiAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenPatkowski.P2HydrogenPatkowskiMolecular.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenPatkowski.P2HydrogenPatkowskiMolecular</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenPatkowskiAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenPatkowskiAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2MoleculeMonatomic.html" title="class in etomica.potential"><span class="typeNameLink">P2MoleculeMonatomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2NitrogenHellmann.html" title="class in etomica.potential"><span class="typeNameLink">P2NitrogenHellmann</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>, etomica.potential.<a href="etomica/potential/IPotentialTorque.html" title="interface in etomica.potential">IPotentialTorque</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2NitrogenHellmann.P2N2QFH.html" title="class in etomica.potential"><span class="typeNameLink">P2NitrogenHellmann.P2N2QFH</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2O2Bartolomei.html" title="class in etomica.potential"><span class="typeNameLink">P2O2Bartolomei</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2O2Bartolomei.P2O2TI.html" title="class in etomica.potential"><span class="typeNameLink">P2O2Bartolomei.P2O2TI</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2PotentialGroupBuilder.html" title="class in etomica.potential"><span class="typeNameLink">P2PotentialGroupBuilder</span></a></li>
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<li class="circle">etomica.potential.<a href="etomica/potential/P3AdditiveQChem.html" title="class in etomica.potential"><span class="typeNameLink">P3AdditiveQChem</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3AxilrodTeller.html" title="class in etomica.potential"><span class="typeNameLink">P3AxilrodTeller</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3AxilrodTeller.MyAgent.html" title="class in etomica.potential"><span class="typeNameLink">P3AxilrodTeller.MyAgent</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3HydrogenATM.html" title="class in etomica.potential"><span class="typeNameLink">P3HydrogenATM</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential">IPotential</a>)
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<li class="circle">etomica.potential.<a href="etomica/potential/P3HydrogenATM.P3HydrogenAtomic.html" title="class in etomica.potential"><span class="typeNameLink">P3HydrogenATM.P3HydrogenAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
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<li class="circle">etomica.potential.<a href="etomica/potential/P3HydrogenManzhos.html" title="class in etomica.potential"><span class="typeNameLink">P3HydrogenManzhos</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential">IPotential</a>)
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<li class="circle">etomica.potential.<a href="etomica/potential/P3HydrogenGarberoglioMolecular.html" title="class in etomica.potential"><span class="typeNameLink">P3HydrogenGarberoglioMolecular</span></a></li>
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<li class="circle">etomica.potential.<a href="etomica/potential/P3Induction.MyAgent.html" title="class in etomica.potential"><span class="typeNameLink">P3Induction.MyAgent</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3NitrogenHellmannNonAdditive.html" title="class in etomica.potential"><span class="typeNameLink">P3NitrogenHellmannNonAdditive</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3QChem.html" title="class in etomica.potential"><span class="typeNameLink">P3QChem</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/PadeApproximation.html" title="class in etomica.math.numerical"><span class="typeNameLink">PadeApproximation</span></a></li>
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<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM3PtEBondDecomp.VirialAssociatingFluidParam.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM3PtEBondDecomp.VirialAssociatingFluidParam</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM3PtThreeSite.VirialAssociatingFluidParam.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM3PtThreeSite.VirialAssociatingFluidParam</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM4PtEBondDecomp.WertheimAssociatingFluidParam.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM4PtEBondDecomp.WertheimAssociatingFluidParam</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM4PtEBondDecompFinal.VirialAssociatingFluidParam.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM4PtEBondDecompFinal.VirialAssociatingFluidParam</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM4PtThreeSite.VirialAssociatingFluidParam.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM4PtThreeSite.VirialAssociatingFluidParam</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM4PtThreeSiteEDecompDirectSampling.VirialAssociatingFluidParam.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM4PtThreeSiteEDecompDirectSampling.VirialAssociatingFluidParam</span></a></li>
</ul>
</li>
<li class="circle">etomica.parser.<a href="etomica/parser/ParmedParser.html" title="class in etomica.parser"><span class="typeNameLink">ParmedParser</span></a></li>
<li class="circle">etomica.parser.<a href="etomica/parser/ParmedStructure.html" title="class in etomica.parser"><span class="typeNameLink">ParmedStructure</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/ParseArgs.html" title="class in etomica.util"><span class="typeNameLink">ParseArgs</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Parser.html" title="class in org.jmol.util"><span class="typeNameLink">Parser</span></a></li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/ParserImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">ParserImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.html" title="interface in etomica.graph.engine">Parser</a>)</li>
<li class="circle">etomica.parser.<a href="etomica/parser/ParserLAMMPS.html" title="class in etomica.parser"><span class="typeNameLink">ParserLAMMPS</span></a></li>
<li class="circle">etomica.parser.<a href="etomica/parser/ParserLAMMPS.Options.html" title="class in etomica.parser"><span class="typeNameLink">ParserLAMMPS.Options</span></a></li>
<li class="circle">etomica.parser.<a href="etomica/parser/ParserLAMMPS.Stuff.html" title="class in etomica.parser"><span class="typeNameLink">ParserLAMMPS.Stuff</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/PartitionsP.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">PartitionsP</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/PCopy.html" title="class in etomica.graph.operations"><span class="typeNameLink">PCopy</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/PDBWriter.html" title="class in etomica.action"><span class="typeNameLink">PDBWriter</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/PercusYevick.html" title="class in etomica.virial"><span class="typeNameLink">PercusYevick</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/PercusYevick1QC.html" title="class in etomica.virial"><span class="typeNameLink">PercusYevick1QC</span></a></li>
<li class="circle">etomica.math.discrete.<a href="etomica/math/discrete/PermutationDegenerateIterator.html" title="class in etomica.math.discrete"><span class="typeNameLink">PermutationDegenerateIterator</span></a> (implements etomica.lattice.<a href="etomica/lattice/IndexIterator.html" title="interface in etomica.lattice">IndexIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.math.discrete.<a href="etomica/math/discrete/PermutationIterator.html" title="class in etomica.math.discrete"><span class="typeNameLink">PermutationIterator</span></a> (implements etomica.lattice.<a href="etomica/lattice/IndexIterator.html" title="interface in etomica.lattice">IndexIterator</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/PermutationIterator.html" title="class in etomica.virial.cluster"><span class="typeNameLink">PermutationIterator</span></a></li>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/PistonCylinderGraphic.ModifierAtomDiameter.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">PistonCylinderGraphic.ModifierAtomDiameter</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/PistonCylinderGraphic.ModifierPistonDensity.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">PistonCylinderGraphic.ModifierPistonDensity</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Plane.html" title="class in etomica.math.geometry"><span class="typeNameLink">Plane</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.modules.pistoncylinder.<a href="etomica/modules/pistoncylinder/PistonPlane.html" title="class in etomica.modules.pistoncylinder"><span class="typeNameLink">PistonPlane</span></a></li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/WallPlane.html" title="class in etomica.modules.sam"><span class="typeNameLink">WallPlane</span></a></li>
</ul>
</li>
<li class="circle">org.jmol.awt.<a href="org/jmol/awt/Platform.html" title="class in org.jmol.awt"><span class="typeNameLink">Platform</span></a> (implements org.jmol.api.<a href="org/jmol/api/ApiPlatform.html" title="interface in org.jmol.api">ApiPlatform</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNCO2GCPM.P3GCPMAxilrodTeller.html" title="class in etomica.models.co2"><span class="typeNameLink">PNCO2GCPM.P3GCPMAxilrodTeller</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNGCPM.GCPMAgent.html" title="class in etomica.models.co2"><span class="typeNameLink">PNGCPM.GCPMAgent</span></a></li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNGCPM.P3GCPMAxilrodTeller.html" title="class in etomica.models.co2"><span class="typeNameLink">PNGCPM.P3GCPMAxilrodTeller</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNGCPM.PNGCPMCached.html" title="class in etomica.models.co2"><span class="typeNameLink">PNGCPM.PNGCPMCached</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/PNWaterGCPM.PNWaterGCPMCached.html" title="class in etomica.models.water"><span class="typeNameLink">PNWaterGCPM.PNWaterGCPMCached</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/PolynomialFit.html" title="class in etomica.math.numerical"><span class="typeNameLink">PolynomialFit</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/PolynomialFit.FitResult.html" title="class in etomica.math.numerical"><span class="typeNameLink">PolynomialFit.FitResult</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Polytope.html" title="class in etomica.math.geometry"><span class="typeNameLink">Polytope</span></a> (implements java.io.Serializable, etomica.math.geometry.<a href="etomica/math/geometry/Shape.html" title="interface in etomica.math.geometry">Shape</a>)
<ul>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/LineSegment.html" title="class in etomica.math.geometry"><span class="typeNameLink">LineSegment</span></a> (implements etomica.math.geometry.<a href="etomica/math/geometry/Rectangular.html" title="interface in etomica.math.geometry">Rectangular</a>)</li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Point.html" title="class in etomica.math.geometry"><span class="typeNameLink">Point</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Polygon.html" title="class in etomica.math.geometry"><span class="typeNameLink">Polygon</span></a>
<ul>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Parallelogram.html" title="class in etomica.math.geometry"><span class="typeNameLink">Parallelogram</span></a> (implements etomica.math.geometry.<a href="etomica/math/geometry/Parallelotope.html" title="interface in etomica.math.geometry">Parallelotope</a>)</li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/PolygonGeneral.html" title="class in etomica.math.geometry"><span class="typeNameLink">PolygonGeneral</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Rectangle.html" title="class in etomica.math.geometry"><span class="typeNameLink">Rectangle</span></a> (implements etomica.math.geometry.<a href="etomica/math/geometry/Rectangular.html" title="interface in etomica.math.geometry">Rectangular</a>)</li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Square.html" title="class in etomica.math.geometry"><span class="typeNameLink">Square</span></a></li>
</ul>
</li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Polyhedron.html" title="class in etomica.math.geometry"><span class="typeNameLink">Polyhedron</span></a>
<ul>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Hexahedron.html" title="class in etomica.math.geometry"><span class="typeNameLink">Hexahedron</span></a>
<ul>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Cube.html" title="class in etomica.math.geometry"><span class="typeNameLink">Cube</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Cuboid.html" title="class in etomica.math.geometry"><span class="typeNameLink">Cuboid</span></a> (implements etomica.math.geometry.<a href="etomica/math/geometry/Rectangular.html" title="interface in etomica.math.geometry">Rectangular</a>)</li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Parallelepiped.html" title="class in etomica.math.geometry"><span class="typeNameLink">Parallelepiped</span></a> (implements etomica.math.geometry.<a href="etomica/math/geometry/Parallelotope.html" title="interface in etomica.math.geometry">Parallelotope</a>)</li>
</ul>
</li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/PolyhedronGeneral.html" title="class in etomica.math.geometry"><span class="typeNameLink">PolyhedronGeneral</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/TruncatedOctahedron.html" title="class in etomica.math.geometry"><span class="typeNameLink">TruncatedOctahedron</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential.html" title="class in etomica.potential"><span class="typeNameLink">Potential</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P3BondAngle.html" title="class in etomica.potential"><span class="typeNameLink">P3BondAngle</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3BondAngleDreiding.html" title="class in etomica.potential"><span class="typeNameLink">P3BondAngleDreiding</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3CPSNonAdditiveHe.html" title="class in etomica.potential"><span class="typeNameLink">P3CPSNonAdditiveHe</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomicMultibody.html" title="interface in etomica.potential">IPotentialAtomicMultibody</a>, etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3CPSNonAdditiveHeLessSimplified.html" title="class in etomica.potential"><span class="typeNameLink">P3CPSNonAdditiveHeLessSimplified</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomicMultibody.html" title="interface in etomica.potential">IPotentialAtomicMultibody</a>, etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3CPSNonAdditiveHeOrig.html" title="class in etomica.potential"><span class="typeNameLink">P3CPSNonAdditiveHeOrig</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P3CPSNonAdditiveHeSimplified.html" title="class in etomica.potential"><span class="typeNameLink">P3CPSNonAdditiveHeSimplified</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomicMultibody.html" title="interface in etomica.potential">IPotentialAtomicMultibody</a>, etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P4BondTorsion.html" title="class in etomica.potential"><span class="typeNameLink">P4BondTorsion</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P4BondTorsionOPLS.html" title="class in etomica.potential"><span class="typeNameLink">P4BondTorsionOPLS</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P4BondTorsionAlkaneXCCH.html" title="class in etomica.potential"><span class="typeNameLink">P4BondTorsionAlkaneXCCH</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P4TorsionDreiding.html" title="class in etomica.potential"><span class="typeNameLink">P4TorsionDreiding</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential0.html" title="class in etomica.potential"><span class="typeNameLink">Potential0</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential0Lrc.html" title="class in etomica.potential"><span class="typeNameLink">Potential0Lrc</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential0Lrc.html" title="interface in etomica.potential">IPotential0Lrc</a>, etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SoftSphericalTruncated.P0Lrc.html" title="class in etomica.potential"><span class="typeNameLink">P2SoftSphericalTruncated.P0Lrc</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential">Potential2Soft</a>)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential1.html" title="class in etomica.potential"><span class="typeNameLink">Potential1</span></a>
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/P1Constraint.html" title="class in etomica.normalmode"><span class="typeNameLink">P1Constraint</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1HardMovingBoundary.html" title="class in etomica.potential"><span class="typeNameLink">P1HardMovingBoundary</span></a> (implements etomica.graphics.<a href="etomica/graphics/Drawable.html" title="interface in etomica.graphics">Drawable</a>, etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1HardPeriodic.html" title="class in etomica.potential"><span class="typeNameLink">P1HardPeriodic</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.modules.osmosis.<a href="etomica/modules/osmosis/P1HardWall.html" title="class in etomica.modules.osmosis"><span class="typeNameLink">P1HardWall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1Harmonic.html" title="class in etomica.potential"><span class="typeNameLink">P1Harmonic</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1HarmonicSite.html" title="class in etomica.potential"><span class="typeNameLink">P1HarmonicSite</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/P1ImageHarmonic.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">P1ImageHarmonic</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.dimer.<a href="etomica/dimer/P1LepsHarmonic.html" title="class in etomica.dimer"><span class="typeNameLink">P1LepsHarmonic</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/P1MagicWall.html" title="class in etomica.modules.mu"><span class="typeNameLink">P1MagicWall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.spin.ising.<a href="etomica/spin/ising/P1MagneticField.html" title="class in etomica.spin.ising"><span class="typeNameLink">P1MagneticField</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1SoftBoundary.html" title="class in etomica.potential"><span class="typeNameLink">P1SoftBoundary</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/P1Tether.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">P1Tether</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/P1Wall.html" title="class in etomica.interfacial"><span class="typeNameLink">P1Wall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/P1WCAPorousWall.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">P1WCAPorousWall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.dcvgcmd.<a href="etomica/dcvgcmd/P1WCAWall.html" title="class in etomica.dcvgcmd"><span class="typeNameLink">P1WCAWall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/P1WCAWall.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">P1WCAWall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/P1WCAWall.html" title="class in etomica.modules.sam"><span class="typeNameLink">P1WCAWall</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential2.html" title="class in etomica.potential"><span class="typeNameLink">Potential2</span></a>
<ul>
<li class="circle">etomica.eam.<a href="etomica/eam/P2EAM.html" title="class in etomica.eam"><span class="typeNameLink">P2EAM</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociationCone.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociationCone</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociationConeDoubleSites.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociationConeDoubleSites</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential">Potential2Soft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociationConeFourSites.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociationConeFourSites</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential">Potential2Soft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociationConeFourSitesSW.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociationConeFourSitesSW</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociationConeOneSite.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociationConeOneSite</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential">Potential2Soft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociationConeReference.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociationConeReference</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociationConeReferenceFourSites.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociationConeReferenceFourSites</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociationConeSW.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociationConeSW</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardBondedList.html" title="class in etomica.potential"><span class="typeNameLink">P2HardBondedList</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.polydisperseHS.<a href="etomica/polydisperseHS/P2HardSpherePoly.html" title="class in etomica.polydisperseHS"><span class="typeNameLink">P2HardSpherePoly</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Ideal.html" title="class in etomica.potential"><span class="typeNameLink">P2Ideal</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential">Potential2Soft</a>, etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>, etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2LJQ.html" title="class in etomica.potential"><span class="typeNameLink">P2LJQ</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential">Potential2Soft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SoftSphericalTruncatedSwitched.html" title="class in etomica.potential"><span class="typeNameLink">P2SoftSphericalTruncatedSwitched</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SoftTruncated.html" title="class in etomica.potential"><span class="typeNameLink">P2SoftTruncated</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential">Potential2Soft</a>, etomica.potential.<a href="etomica/potential/PotentialTruncated.html" title="interface in etomica.potential">PotentialTruncated</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SpheroPolyhedron.html" title="class in etomica.potential"><span class="typeNameLink">P2SpheroPolyhedron</span></a></li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/P2Spin.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">P2Spin</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomicSecondDerivative.html" title="interface in etomica.potential">IPotentialAtomicSecondDerivative</a>, etomica.potential.<a href="etomica/potential/IPotentialTorque.html" title="interface in etomica.potential">IPotentialTorque</a>)</li>
<li class="circle">etomica.spin.ising.<a href="etomica/spin/ising/P2Spin.html" title="class in etomica.spin.ising"><span class="typeNameLink">P2Spin</span></a></li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/P2SquareWellBonding.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">P2SquareWellBonding</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>, etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2TriangleWell.html" title="class in etomica.potential"><span class="typeNameLink">P2TriangleWell</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/P2XOrder.html" title="class in etomica.normalmode"><span class="typeNameLink">P2XOrder</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>, etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential2HardSpherical.html" title="class in etomica.potential"><span class="typeNameLink">Potential2HardSpherical</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>, etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential">PotentialHard</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2DoubleWell.html" title="class in etomica.potential"><span class="typeNameLink">P2DoubleWell</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardAssociation.html" title="class in etomica.potential"><span class="typeNameLink">P2HardAssociation</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardBond.html" title="class in etomica.potential"><span class="typeNameLink">P2HardBond</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HardSphere.html" title="class in etomica.potential"><span class="typeNameLink">P2HardSphere</span></a>
<ul>
<li class="circle">etomica.cavity.<a href="etomica/cavity/P2HardSphereCavity.html" title="class in etomica.cavity"><span class="typeNameLink">P2HardSphereCavity</span></a></li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/P2HardSphereMC.html" title="class in etomica.modules.colloid"><span class="typeNameLink">P2HardSphereMC</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2RoughSphere.html" title="class in etomica.potential"><span class="typeNameLink">P2RoughSphere</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2PenetrableBond.html" title="class in etomica.potential"><span class="typeNameLink">P2PenetrableBond</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2PenetrableSphere.html" title="class in etomica.potential"><span class="typeNameLink">P2PenetrableSphere</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2PenetrableSquareWell.html" title="class in etomica.potential"><span class="typeNameLink">P2PenetrableSquareWell</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SquareWell.html" title="class in etomica.potential"><span class="typeNameLink">P2SquareWell</span></a>
<ul>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/P2SquareWellBonded.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">P2SquareWellBonded</span></a></li>
<li class="circle">etomica.modules.reactionequilibrium.<a href="etomica/modules/reactionequilibrium/P2SquareWellBonded.html" title="class in etomica.modules.reactionequilibrium"><span class="typeNameLink">P2SquareWellBonded</span></a></li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/P2SquareWellMonomer.html" title="class in etomica.modules.colloid"><span class="typeNameLink">P2SquareWellMonomer</span></a></li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/P2SquareWellRadical.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">P2SquareWellRadical</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/P2SquareWellBondingCO.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">P2SquareWellBondingCO</span></a></li>
<li class="circle">etomica.modules.mu.<a href="etomica/modules/mu/P2SquareWellOneSide.html" title="class in etomica.modules.mu"><span class="typeNameLink">P2SquareWellOneSide</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SquareWellRobust.html" title="class in etomica.potential"><span class="typeNameLink">P2SquareWellRobust</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/P2SquareWellSurface.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">P2SquareWellSurface</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Tether.html" title="class in etomica.potential"><span class="typeNameLink">P2Tether</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential2SoftSpherical.html" title="class in etomica.potential"><span class="typeNameLink">Potential2SoftSpherical</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential">Potential2Soft</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Anharmonic.html" title="class in etomica.potential"><span class="typeNameLink">P2Anharmonic</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2ArgonAziz1993.html" title="class in etomica.potential"><span class="typeNameLink">P2ArgonAziz1993</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2ArgonSlavicekEtAl2003.html" title="class in etomica.potential"><span class="typeNameLink">P2ArgonSlavicekEtAl2003</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2ArgonTangAndToennies2003.html" title="class in etomica.potential"><span class="typeNameLink">P2ArgonTangAndToennies2003</span></a></li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/P2Cohesion.html" title="class in etomica.modules.droplet"><span class="typeNameLink">P2Cohesion</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2DiscreteFeynmanHibbs.P2HeEmpericalQuantum.html" title="class in etomica.potential"><span class="typeNameLink">P2DiscreteFeynmanHibbs.P2HeEmpericalQuantum</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Dreiding.html" title="class in etomica.potential"><span class="typeNameLink">P2Dreiding</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Electrostatic.html" title="class in etomica.potential"><span class="typeNameLink">P2Electrostatic</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2ElectrostaticWithHardCore.html" title="class in etomica.potential"><span class="typeNameLink">P2ElectrostaticWithHardCore</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Exp6.html" title="class in etomica.potential"><span class="typeNameLink">P2Exp6</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Exp6Buckingham.html" title="class in etomica.potential"><span class="typeNameLink">P2Exp6Buckingham</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Fene.html" title="class in etomica.potential"><span class="typeNameLink">P2Fene</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Harmonic.html" title="class in etomica.potential"><span class="typeNameLink">P2Harmonic</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HC2Yukawa.html" title="class in etomica.potential"><span class="typeNameLink">P2HC2Yukawa</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HePCJS.html" title="class in etomica.potential"><span class="typeNameLink">P2HePCJS</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HePCKLJS.html" title="class in etomica.potential"><span class="typeNameLink">P2HePCKLJS</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HeSimplified.html" title="class in etomica.potential"><span class="typeNameLink">P2HeSimplified</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HydrogenPatkowskiIso.html" title="class in etomica.potential"><span class="typeNameLink">P2HydrogenPatkowskiIso</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2LennardJones.html" title="class in etomica.potential"><span class="typeNameLink">P2LennardJones</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2LennardJonesDreiding.html" title="class in etomica.potential"><span class="typeNameLink">P2LennardJonesDreiding</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2LJQQ.html" title="class in etomica.potential"><span class="typeNameLink">P2LJQQ</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2ModifiedMorse.html" title="class in etomica.potential"><span class="typeNameLink">P2ModifiedMorse</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Morse.html" title="class in etomica.potential"><span class="typeNameLink">P2Morse</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2QChemInterpolated.html" title="class in etomica.potential"><span class="typeNameLink">P2QChemInterpolated</span></a></li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/P2RepRowley.html" title="class in etomica.models.rowley"><span class="typeNameLink">P2RepRowley</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SoftSphere.html" title="class in etomica.potential"><span class="typeNameLink">P2SoftSphere</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SoftSphericalTruncated.html" title="class in etomica.potential"><span class="typeNameLink">P2SoftSphericalTruncated</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialTruncated.html" title="interface in etomica.potential">PotentialTruncated</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SoftSphericalTruncatedShifted.html" title="class in etomica.potential"><span class="typeNameLink">P2SoftSphericalTruncatedShifted</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SoftSphericalTruncatedForceShifted.html" title="class in etomica.potential"><span class="typeNameLink">P2SoftSphericalTruncatedForceShifted</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2WCA.html" title="class in etomica.potential"><span class="typeNameLink">P2WCA</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2Yukawa.html" title="class in etomica.potential"><span class="typeNameLink">P2Yukawa</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential2SoftSphericalLS.html" title="class in etomica.potential"><span class="typeNameLink">Potential2SoftSphericalLS</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/Potential2SoftSphericalLSMulti.html" title="class in etomica.liquidLJ"><span class="typeNameLink">Potential2SoftSphericalLSMulti</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/Potential2SoftSphericalLSMultiLat.html" title="class in etomica.liquidLJ"><span class="typeNameLink">Potential2SoftSphericalLSMultiLat</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)
<ul>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/Potential2SoftSphericalLSMultiLatSlanty.html" title="class in etomica.liquidLJ"><span class="typeNameLink">Potential2SoftSphericalLSMultiLatSlanty</span></a></li>
</ul>
</li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/PotentialDepletion.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">PotentialDepletion</span></a> (implements etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>)</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialN.html" title="class in etomica.potential"><span class="typeNameLink">PotentialN</span></a>
<ul>
<li class="circle">etomica.eam.<a href="etomica/eam/PotentialCuLREP.html" title="class in etomica.eam"><span class="typeNameLink">PotentialCuLREP</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.eam.<a href="etomica/eam/PotentialEAM.html" title="class in etomica.eam"><span class="typeNameLink">PotentialEAM</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.eam.<a href="etomica/eam/PotentialEAM_LS.html" title="class in etomica.eam"><span class="typeNameLink">PotentialEAM_LS</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
<li class="circle">etomica.eam.<a href="etomica/eam/PotentialEFS.html" title="class in etomica.eam"><span class="typeNameLink">PotentialEFS</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/Potential2SoftSphericalLSMultiLat.ReturnValue.html" title="class in etomica.liquidLJ"><span class="typeNameLink">Potential2SoftSphericalLSMultiLat.ReturnValue</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialArray.html" title="class in etomica.potential"><span class="typeNameLink">PotentialArray</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialArrayByType.html" title="class in etomica.potential"><span class="typeNameLink">PotentialArrayByType</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialArrayMolecular.html" title="class in etomica.potential"><span class="typeNameLink">PotentialArrayMolecular</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialAtomicSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialAtomicSum</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/PotentialCalculationDUDW.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">PotentialCalculationDUDW</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/PotentialCalculationEFSSP.html" title="class in etomica.normalmode"><span class="typeNameLink">PotentialCalculationEFSSP</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationEnergySum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationEnergySum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>, etomica.potential.<a href="etomica/potential/PotentialCalculationMolecular.html" title="interface in etomica.potential">PotentialCalculationMolecular</a>, java.io.Serializable)
<ul>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/DataSourceEnergies.PotentialCalculationEnergies.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">DataSourceEnergies.PotentialCalculationEnergies</span></a>
<ul>
<li class="circle">etomica.freeenergy.npath.<a href="etomica/freeenergy/npath/DataSourceEnergies.PotentialCalculationEnergiesEAM.html" title="class in etomica.freeenergy.npath"><span class="typeNameLink">DataSourceEnergies.PotentialCalculationEnergiesEAM</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationEnergySumBigDecimal.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationEnergySumBigDecimal</span></a></li>
<li class="circle">etomica.eam.<a href="etomica/eam/PotentialCalculationEnergySumEAM.html" title="class in etomica.eam"><span class="typeNameLink">PotentialCalculationEnergySumEAM</span></a></li>
</ul>
</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/PotentialCalculationEnergySumCutoff.html" title="class in etomica.liquidLJ"><span class="typeNameLink">PotentialCalculationEnergySumCutoff</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationForceSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationForceSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationForcePressureSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationForcePressureSum</span></a>
<ul>
<li class="circle">etomica.modules.materialfracture.<a href="etomica/modules/materialfracture/PotentialCalculationForceStress.html" title="class in etomica.modules.materialfracture"><span class="typeNameLink">PotentialCalculationForceStress</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/PotentialCalculationForceSumGlass.html" title="class in etomica.modules.glass"><span class="typeNameLink">PotentialCalculationForceSumGlass</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/AtomStressSource.html" title="interface in etomica.modules.glass">AtomStressSource</a>)</li>
</ul>
</li>
<li class="circle">etomica.dimer.<a href="etomica/dimer/PotentialCalculationForcePressureSumGB.html" title="class in etomica.dimer"><span class="typeNameLink">PotentialCalculationForcePressureSumGB</span></a></li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/PotentialCalculationForceSumWall.html" title="class in etomica.modules.sam"><span class="typeNameLink">PotentialCalculationForceSumWall</span></a></li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/PotentialCalculationForceSumWallForce.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">PotentialCalculationForceSumWallForce</span></a> (implements etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/IPotentialCalculationWallForce.html" title="interface in etomica.modules.rosmosis">IPotentialCalculationWallForce</a>)</li>
</ul>
</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationFreeEnergy.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationFreeEnergy</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationFSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationFSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculationMolecular.html" title="interface in etomica.potential">PotentialCalculationMolecular</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationFSum.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationFSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculationMolecular.html" title="interface in etomica.potential">PotentialCalculationMolecular</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationHeisenberg.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationHeisenberg</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationHyperVirialSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationHyperVirialSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/PotentialCalculationLJSP.html" title="class in etomica.normalmode"><span class="typeNameLink">PotentialCalculationLJSP</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/PotentialCalculationMappedEnergy.html" title="class in etomica.mappedvirial"><span class="typeNameLink">PotentialCalculationMappedEnergy</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.mappedRdf.<a href="etomica/mappedRdf/PotentialCalculationMappedRdf.html" title="class in etomica.mappedRdf"><span class="typeNameLink">PotentialCalculationMappedRdf</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/PotentialCalculationMappedVirial.html" title="class in etomica.mappedvirial"><span class="typeNameLink">PotentialCalculationMappedVirial</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/PotentialCalculationMappedVirialV.html" title="class in etomica.mappedvirial"><span class="typeNameLink">PotentialCalculationMappedVirialV</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/PotentialCalculationMappedVirialV.UShift.html" title="class in etomica.mappedvirial"><span class="typeNameLink">PotentialCalculationMappedVirialV.UShift</span></a> (implements etomica.mappedvirial.<a href="etomica/mappedvirial/PotentialCalculationMappedVirialV.VFunc.html" title="interface in etomica.mappedvirial">PotentialCalculationMappedVirialV.VFunc</a>)</li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/PotentialCalculationMappedVirialV.USine.html" title="class in etomica.mappedvirial"><span class="typeNameLink">PotentialCalculationMappedVirialV.USine</span></a> (implements etomica.mappedvirial.<a href="etomica/mappedvirial/PotentialCalculationMappedVirialV.VFunc.html" title="interface in etomica.mappedvirial">PotentialCalculationMappedVirialV.VFunc</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationMeanField.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationMeanField</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;, etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationMolecularVirialSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationMolecularVirialSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculationMolecular.html" title="interface in etomica.potential">PotentialCalculationMolecular</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationMoleculeAgentSum.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationMoleculeAgentSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationMoleculeAgentSumMinusIdeal.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationMoleculeAgentSumMinusIdeal</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationMoleculeAgentSumMinusIdealPair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationMoleculeAgentSumMinusIdealPair</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationMoleculeAgentSumPair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationMoleculeAgentSumPair</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationPair.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationPair</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationPhiSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationPhiSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculationMolecular.html" title="interface in etomica.potential">PotentialCalculationMolecular</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationPhiSum.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationPhiSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationPhiSumHeisenberg.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationPhiSumHeisenberg</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculationMolecular.html" title="interface in etomica.potential">PotentialCalculationMolecular</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationPressureTensor.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationPressureTensor</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/PotentialCalculationRDF.html" title="class in etomica.data.meter"><span class="typeNameLink">PotentialCalculationRDF</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/PotentialCalculationSolidSuper.html" title="class in etomica.normalmode"><span class="typeNameLink">PotentialCalculationSolidSuper</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/PotentialCalculationSolidSuperCut.html" title="class in etomica.normalmode"><span class="typeNameLink">PotentialCalculationSolidSuperCut</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/PotentialCalculationSolidSuperCutLS.html" title="class in etomica.normalmode"><span class="typeNameLink">PotentialCalculationSolidSuperCutLS</span></a></li>
</ul>
</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/PotentialCalculationSumCutoff.html" title="class in etomica.liquidLJ"><span class="typeNameLink">PotentialCalculationSumCutoff</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/PotentialCalculationSumCutoffLS.html" title="class in etomica.liquidLJ"><span class="typeNameLink">PotentialCalculationSumCutoffLS</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationSumquare.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationSumquare</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationTorqueSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationTorqueSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculationMolecular.html" title="interface in etomica.potential">PotentialCalculationMolecular</a>)
<ul>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/PotentialCalculationTorqueSumWallForce.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">PotentialCalculationTorqueSumWallForce</span></a> (implements etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/IPotentialCalculationWallForce.html" title="interface in etomica.modules.rosmosis">IPotentialCalculationWallForce</a>)</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationVirialSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialCalculationVirialSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.spin.heisenberg.<a href="etomica/spin/heisenberg/PotentialCalculationVSum.html" title="class in etomica.spin.heisenberg"><span class="typeNameLink">PotentialCalculationVSum</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential">PotentialCalculation</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/PotentialCommonAtomic.html" title="class in etomica.virial"><span class="typeNameLink">PotentialCommonAtomic</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential">IPotentialAtomic</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialGroup.PotentialLinker.html" title="class in etomica.potential"><span class="typeNameLink">PotentialGroup.PotentialLinker</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/PotentialGroup3PI.PotentialGroup3PISkip.html" title="class in etomica.virial"><span class="typeNameLink">PotentialGroup3PI.PotentialGroup3PISkip</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/PotentialGroupPI.PotentialGroupPISkip.html" title="class in etomica.virial"><span class="typeNameLink">PotentialGroupPI.PotentialGroupPISkip</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMaster.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMaster</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMasterMonatomic.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMasterMonatomic</span></a> (implements etomica.atom.<a href="etomica/atom/AtomTypeAgentManager.AgentSource.html" title="interface in etomica.atom">AtomTypeAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/PotentialMasterNbr.html" title="class in etomica.nbr"><span class="typeNameLink">PotentialMasterNbr</span></a>
<ul>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/PotentialMasterCell.html" title="class in etomica.nbr.cell"><span class="typeNameLink">PotentialMasterCell</span></a>
<ul>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/PotentialMasterCellMixed.html" title="class in etomica.nbr.cell"><span class="typeNameLink">PotentialMasterCellMixed</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/PotentialMasterHybrid.html" title="class in etomica.nbr"><span class="typeNameLink">PotentialMasterHybrid</span></a></li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/PotentialMasterList.html" title="class in etomica.nbr.list"><span class="typeNameLink">PotentialMasterList</span></a></li>
<li class="circle">etomica.nbr.site.<a href="etomica/nbr/site/PotentialMasterSite.html" title="class in etomica.nbr.site"><span class="typeNameLink">PotentialMasterSite</span></a></li>
</ul>
</li>
<li class="circle">etomica.nbr.molecule.<a href="etomica/nbr/molecule/PotentialMasterNbrMolecular.html" title="class in etomica.nbr.molecule"><span class="typeNameLink">PotentialMasterNbrMolecular</span></a>
<ul>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/PotentialMasterListMolecular.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">PotentialMasterListMolecular</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMaster.AtomIterator0.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMaster.AtomIterator0</span></a> (implements etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMaster.MoleculeIterator0.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMaster.MoleculeIterator0</span></a> (implements etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorPDT</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMaster.PotentialLinker.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMaster.PotentialLinker</span></a></li>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/PotentialMasterListMolecular.NeighborListAgentSourceMolecular.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">PotentialMasterListMolecular.NeighborListAgentSourceMolecular</span></a> (implements etomica.box.<a href="etomica/box/BoxAgentManager.BoxAgentSource.html" title="interface in etomica.box">BoxAgentManager.BoxAgentSource</a>&lt;E&gt;)
<ul>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/NeighborListManagerSlantyMolecular.NeighborListSlantyAgentSourceMolecular.html" title="class in etomica.nbr.list.molecule"><span class="typeNameLink">NeighborListManagerSlantyMolecular.NeighborListSlantyAgentSourceMolecular</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMasterLrc.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMasterLrc</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMolecular.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMolecular</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)
<ul>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/P0LatticeEnergyCorrec.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">P0LatticeEnergyCorrec</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1ExternalField.html" title="class in etomica.potential"><span class="typeNameLink">P1ExternalField</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P22CLJmuQ.html" title="class in etomica.potential"><span class="typeNameLink">P22CLJmuQ</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialMolecularSoft.html" title="interface in etomica.potential">PotentialMolecularSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P22CLJQ.html" title="class in etomica.potential"><span class="typeNameLink">P22CLJQ</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2CO2EMP.html" title="class in etomica.potential"><span class="typeNameLink">P2CO2EMP</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/P2CO2EMP1.html" title="class in etomica.potential"><span class="typeNameLink">P2CO2EMP1</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2CO2EMP2.html" title="class in etomica.potential"><span class="typeNameLink">P2CO2EMP2</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2CO2TraPPE.html" title="class in etomica.potential"><span class="typeNameLink">P2CO2TraPPE</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2DLPOLY.html" title="class in etomica.potential"><span class="typeNameLink">P2DLPOLY</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2HSDipole.html" title="class in etomica.potential"><span class="typeNameLink">P2HSDipole</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularSecondDerivative.html" title="interface in etomica.potential">IPotentialMolecularSecondDerivative</a>)</li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/P2HSPolymer.html" title="class in etomica.starpolymer"><span class="typeNameLink">P2HSPolymer</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2LJDipole.html" title="class in etomica.potential"><span class="typeNameLink">P2LJDipole</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularSecondDerivative.html" title="interface in etomica.potential">IPotentialMolecularSecondDerivative</a>)</li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/P2LJDipole.html" title="class in etomica.rotation"><span class="typeNameLink">P2LJDipole</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularTorque.html" title="interface in etomica.potential">IPotentialMolecularTorque</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2MoleculeSoftTruncatedSwitched.html" title="class in etomica.potential"><span class="typeNameLink">P2MoleculeSoftTruncatedSwitched</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularTorque.html" title="interface in etomica.potential">IPotentialMolecularTorque</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2MoleculeTruncated.html" title="class in etomica.potential"><span class="typeNameLink">P2MoleculeTruncated</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/P2Nitrogen.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">P2Nitrogen</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularTorque.html" title="interface in etomica.potential">IPotentialMolecularTorque</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/P2NitrogenAB.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">P2NitrogenAB</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialMolecularSoft.html" title="interface in etomica.potential">PotentialMolecularSoft</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/P2NitrogenAnisotropic.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">P2NitrogenAnisotropic</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/P2NitrogenShellModel.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">P2NitrogenShellModel</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialMolecularSoft.html" title="interface in etomica.potential">PotentialMolecularSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2QChem.html" title="class in etomica.potential"><span class="typeNameLink">P2QChem</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2ReactionFieldDipole.html" title="class in etomica.potential"><span class="typeNameLink">P2ReactionFieldDipole</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularSecondDerivative.html" title="interface in etomica.potential">IPotentialMolecularSecondDerivative</a>, etomica.potential.<a href="etomica/potential/PotentialMolecularSoft.html" title="interface in etomica.potential">PotentialMolecularSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2ReactionFieldDipoleTruncated.html" title="class in etomica.potential"><span class="typeNameLink">P2ReactionFieldDipoleTruncated</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularTorque.html" title="interface in etomica.potential">IPotentialMolecularTorque</a>, etomica.potential.<a href="etomica/potential/PotentialMolecularSoft.html" title="interface in etomica.potential">PotentialMolecularSoft</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2ReactionFieldDipoleTruncated.P0ReactionField.html" title="class in etomica.potential"><span class="typeNameLink">P2ReactionFieldDipoleTruncated.P0ReactionField</span></a> (implements etomica.potential.<a href="etomica/potential/IPotential0Lrc.html" title="interface in etomica.potential">IPotential0Lrc</a>, etomica.potential.<a href="etomica/potential/PotentialMolecularSoft.html" title="interface in etomica.potential">PotentialMolecularSoft</a>)</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2Water3P.html" title="class in etomica.models.water"><span class="typeNameLink">P2Water3P</span></a>
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2Water3PSoft.html" title="class in etomica.models.water"><span class="typeNameLink">P2Water3PSoft</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularTorque.html" title="interface in etomica.potential">IPotentialMolecularTorque</a>)
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2WaterSPCSoft.html" title="class in etomica.models.water"><span class="typeNameLink">P2WaterSPCSoft</span></a></li>
</ul>
</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2WaterSPC.html" title="class in etomica.models.water"><span class="typeNameLink">P2WaterSPC</span></a></li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2WaterSPCE.html" title="class in etomica.models.water"><span class="typeNameLink">P2WaterSPCE</span></a></li>
</ul>
</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2Water4P.html" title="class in etomica.models.water"><span class="typeNameLink">P2Water4P</span></a>
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2Water4PSoft.html" title="class in etomica.models.water"><span class="typeNameLink">P2Water4PSoft</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecularSecondDerivative.html" title="interface in etomica.potential">IPotentialMolecularSecondDerivative</a>)
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2WaterTIP4PSoft.html" title="class in etomica.models.water"><span class="typeNameLink">P2WaterTIP4PSoft</span></a></li>
</ul>
</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2WaterTIP4P.html" title="class in etomica.models.water"><span class="typeNameLink">P2WaterTIP4P</span></a></li>
</ul>
</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2WaterTIP4PHardCore.html" title="class in etomica.models.water"><span class="typeNameLink">P2WaterTIP4PHardCore</span></a></li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNCO2GCPM.html" title="class in etomica.models.co2"><span class="typeNameLink">PNCO2GCPM</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialPolarizable.html" title="interface in etomica.potential">PotentialPolarizable</a>)</li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNGCPM.html" title="class in etomica.models.co2"><span class="typeNameLink">PNGCPM</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialPolarizable.html" title="interface in etomica.potential">PotentialPolarizable</a>)
<ul>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNGCPMX.html" title="class in etomica.models.co2"><span class="typeNameLink">PNGCPMX</span></a></li>
</ul>
</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/PNWaterGCPM.html" title="class in etomica.models.water"><span class="typeNameLink">PNWaterGCPM</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialPolarizable.html" title="interface in etomica.potential">PotentialPolarizable</a>)
<ul>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2HardAssociationGCPMReference.html" title="class in etomica.models.water"><span class="typeNameLink">P2HardAssociationGCPMReference</span></a></li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/PNWaterGCPMThreeSite.html" title="class in etomica.models.water"><span class="typeNameLink">PNWaterGCPMThreeSite</span></a></li>
</ul>
</li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/PNWaterGCPMReactionField.html" title="class in etomica.models.water"><span class="typeNameLink">PNWaterGCPMReactionField</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialPolarizable.html" title="interface in etomica.potential">PotentialPolarizable</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialDLPOLY.html" title="class in etomica.potential"><span class="typeNameLink">PotentialDLPOLY</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialEmul.html" title="class in etomica.potential"><span class="typeNameLink">PotentialEmul</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/PotentialEmulCached.html" title="class in etomica.virial"><span class="typeNameLink">PotentialEmulCached</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialGroup.html" title="class in etomica.potential"><span class="typeNameLink">PotentialGroup</span></a>
<ul>
<li class="circle">etomica.models.OPLS.<a href="etomica/models/OPLS/P2AceticAcidTwoSite.html" title="class in etomica.models.OPLS"><span class="typeNameLink">P2AceticAcidTwoSite</span></a></li>
<li class="circle">etomica.models.OPLS.<a href="etomica/models/OPLS/P2HardAssociationRefAceticAcidTwoSite.html" title="class in etomica.models.OPLS"><span class="typeNameLink">P2HardAssociationRefAceticAcidTwoSite</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/PotentialGroup3PI.html" title="class in etomica.virial"><span class="typeNameLink">PotentialGroup3PI</span></a></li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/PotentialGroupNbr.html" title="class in etomica.nbr"><span class="typeNameLink">PotentialGroupNbr</span></a>
<ul>
<li class="circle">etomica.nbr.<a href="etomica/nbr/PotentialGroupHybrid.html" title="class in etomica.nbr"><span class="typeNameLink">PotentialGroupHybrid</span></a></li>
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<li class="circle">etomica.virial.<a href="etomica/virial/PotentialGroupPI.html" title="class in etomica.virial"><span class="typeNameLink">PotentialGroupPI</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialGroupSoft.html" title="class in etomica.potential"><span class="typeNameLink">PotentialGroupSoft</span></a> (implements etomica.potential.<a href="etomica/potential/PotentialMolecularSoft.html" title="interface in etomica.potential">PotentialMolecularSoft</a>)</li>
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<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMolecularMonatomic.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMolecularMonatomic</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialNonAdditiveDifference.html" title="class in etomica.potential"><span class="typeNameLink">PotentialNonAdditiveDifference</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/PRotConstraint.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">PRotConstraint</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB2WaterTIP4P_DHS_difference.P2WaterDHS.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB2WaterTIP4P_DHS_difference.P2WaterDHS</span></a></li>
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<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMolecularSum.html" title="class in etomica.potential"><span class="typeNameLink">PotentialMolecularSum</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/PotentialNonAdditive.html" title="class in etomica.virial"><span class="typeNameLink">PotentialNonAdditive</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/PotentialNonAdditive.PotentialNonAdditiveNB.html" title="class in etomica.virial"><span class="typeNameLink">PotentialNonAdditive.PotentialNonAdditiveNB</span></a> (implements etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential">IPotentialMolecular</a>)</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialReactive.BondChangeData.html" title="class in etomica.potential"><span class="typeNameLink">PotentialReactive.BondChangeData</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Pow.html" title="class in etomica.graph.operations"><span class="typeNameLink">Pow</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/PowParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">PowParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.units.<a href="etomica/units/PrefixedUnit.html" title="class in etomica.units"><span class="typeNameLink">PrefixedUnit</span></a> (implements etomica.units.<a href="etomica/units/Unit.html" title="interface in etomica.units">Unit</a>)</li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/Prime.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">Prime</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/Primitive.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">Primitive</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveBcc.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveBcc</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveCubic.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveCubic</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveFcc.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveFcc</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveGeneral.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveGeneral</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveHexagonal.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveHexagonal</span></a>
<ul>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveHexagonal.PrimitiveHexagonalReciprocal.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveHexagonal.PrimitiveHexagonalReciprocal</span></a></li>
</ul>
</li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveHexagonal2D.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveHexagonal2D</span></a>
<ul>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveHexagonal2D.PrimitiveHexagonal2DReciprocal.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveHexagonal2D.PrimitiveHexagonal2DReciprocal</span></a></li>
</ul>
</li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveMonoclinic.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveMonoclinic</span></a>
<ul>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveMonoclinic.PrimitiveMonoclinicReciprocal.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveMonoclinic.PrimitiveMonoclinicReciprocal</span></a></li>
</ul>
</li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveOrthorhombic.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveOrthorhombic</span></a>
<ul>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveHCP4.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveHCP4</span></a></li>
</ul>
</li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveOrthorhombicHexagonal.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveOrthorhombicHexagonal</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveTetragonal.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveTetragonal</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveTriclinic.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveTriclinic</span></a></li>
<li class="circle">etomica.lattice.crystal.<a href="etomica/lattice/crystal/PrimitiveTrigonal.html" title="class in etomica.lattice.crystal"><span class="typeNameLink">PrimitiveTrigonal</span></a></li>
</ul>
</li>
<li class="circle">etomica.server.resources.<a href="etomica/server/resources/PropertiesResource.html" title="class in etomica.server.resources"><span class="typeNameLink">PropertiesResource</span></a></li>
<li class="circle">java.beans.PropertyEditorSupport (implements java.beans.PropertyEditor)
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DimensionedDoubleEditor.html" title="class in etomica.graphics"><span class="typeNameLink">DimensionedDoubleEditor</span></a> (implements java.awt.event.ItemListener, javax.swing.JComboBox.KeySelectionManager, java.io.Serializable)</li>
</ul>
</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/PropertyImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">PropertyImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.Property.html" title="interface in etomica.graph.engine">Parser.Property</a>)</li>
<li class="circle">etomica.server.representations.<a href="etomica/server/representations/PropertyUpdate.html" title="class in etomica.server.representations"><span class="typeNameLink">PropertyUpdate</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/PYGenerator.IteratorEF.html" title="class in etomica.virial"><span class="typeNameLink">PYGenerator.IteratorEF</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)</li>
<li class="circle">etomica.veos.<a href="etomica/veos/QSeries.html" title="class in etomica.veos"><span class="typeNameLink">QSeries</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Quadric.html" title="class in org.jmol.util"><span class="typeNameLink">Quadric</span></a></li>
<li class="circle">etomica.math.<a href="etomica/math/Quaternion.html" title="class in etomica.math"><span class="typeNameLink">Quaternion</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Quaternion.html" title="class in org.jmol.util"><span class="typeNameLink">Quaternion</span></a></li>
<li class="circle">etomica.util.random.<a href="etomica/util/random/RandomMersenneTwister.html" title="class in etomica.util.random"><span class="typeNameLink">RandomMersenneTwister</span></a> (implements etomica.util.random.<a href="etomica/util/random/IRandom.html" title="interface in etomica.util.random">IRandom</a>)</li>
<li class="circle">etomica.util.random.<a href="etomica/util/random/RandomNumberGenerator.html" title="class in etomica.util.random"><span class="typeNameLink">RandomNumberGenerator</span></a> (implements etomica.util.random.<a href="etomica/util/random/IRandom.html" title="interface in etomica.util.random">IRandom</a>)</li>
<li class="circle">etomica.util.random.<a href="etomica/util/random/RandomNumberGeneratorUnix.html" title="class in etomica.util.random"><span class="typeNameLink">RandomNumberGeneratorUnix</span></a> (implements etomica.util.random.<a href="etomica/util/random/IRandom.html" title="interface in etomica.util.random">IRandom</a>)</li>
<li class="circle">etomica.box.<a href="etomica/box/RandomPositionSourceDeformable.html" title="class in etomica.box"><span class="typeNameLink">RandomPositionSourceDeformable</span></a> (implements etomica.box.<a href="etomica/box/RandomPositionSource.html" title="interface in etomica.box">RandomPositionSource</a>)</li>
<li class="circle">etomica.box.<a href="etomica/box/RandomPositionSourceRectangular.html" title="class in etomica.box"><span class="typeNameLink">RandomPositionSourceRectangular</span></a> (implements etomica.box.<a href="etomica/box/RandomPositionSource.html" title="interface in etomica.box">RandomPositionSource</a>)</li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/RangePermutator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">RangePermutator</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/Permutator.html" title="interface in etomica.graph.model">Permutator</a>)</li>
<li class="circle">etomica.math.<a href="etomica/math/Rational.html" title="class in etomica.math"><span class="typeNameLink">Rational</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/Rational.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">Rational</span></a> (implements java.lang.Cloneable, java.lang.Comparable&lt;T&gt;)</li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/ReactionManagerCO.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">ReactionManagerCO</span></a> (implements etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator">IntegratorListener</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/ReadCluster.html" title="class in etomica.modules.glass"><span class="typeNameLink">ReadCluster</span></a></li>
<li class="circle">etomica.eigenstuff.<a href="etomica/eigenstuff/ReaderIn.html" title="class in etomica.eigenstuff"><span class="typeNameLink">ReaderIn</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/ReadParameters.html" title="class in etomica.util"><span class="typeNameLink">ReadParameters</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/RectangularLattice.html" title="class in etomica.lattice"><span class="typeNameLink">RectangularLattice</span></a> (implements etomica.lattice.<a href="etomica/lattice/FiniteLattice.html" title="interface in etomica.lattice">FiniteLattice</a>&lt;T&gt;)
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/CellLattice.html" title="class in etomica.lattice"><span class="typeNameLink">CellLattice</span></a></li>
</ul>
</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/RectangularLattice.Iterator.html" title="class in etomica.lattice"><span class="typeNameLink">RectangularLattice.Iterator</span></a> (implements java.io.Serializable, etomica.lattice.<a href="etomica/lattice/SiteIterator.html" title="interface in etomica.lattice">SiteIterator</a>)</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/RectangularLatticeNbrIterator.html" title="class in etomica.lattice"><span class="typeNameLink">RectangularLatticeNbrIterator</span></a> (implements java.io.Serializable, etomica.lattice.<a href="etomica/lattice/SiteIterator.html" title="interface in etomica.lattice">SiteIterator</a>)
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/RectangularLatticeNbrIteratorAdjacent.html" title="class in etomica.lattice"><span class="typeNameLink">RectangularLatticeNbrIteratorAdjacent</span></a></li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/RectangularLatticeNbrIteratorSquare.html" title="class in etomica.lattice"><span class="typeNameLink">RectangularLatticeNbrIteratorSquare</span></a>
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/CellLattice.NeighborIterator.html" title="class in etomica.lattice"><span class="typeNameLink">CellLattice.NeighborIterator</span></a></li>
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</li>
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</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/ReeHoover.html" title="class in etomica.graph.operations"><span class="typeNameLink">ReeHoover</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/ReeHoover.ReeHooverParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">ReeHoover.ReeHooverParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/ReeHooverMC.html" title="class in etomica.virial.simulations"><span class="typeNameLink">ReeHooverMC</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Relabel.html" title="class in etomica.graph.operations"><span class="typeNameLink">Relabel</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/RelabelParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">RelabelParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/RelabelWertheim.html" title="class in etomica.graph.operations"><span class="typeNameLink">RelabelWertheim</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.compatibility.<a href="etomica/compatibility/Requirement.html" title="class in etomica.compatibility"><span class="typeNameLink">Requirement</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.compatibility.<a href="etomica/compatibility/ClassRequirement.html" title="class in etomica.compatibility"><span class="typeNameLink">ClassRequirement</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.compatibility.<a href="etomica/compatibility/FeatureRequirement.html" title="class in etomica.compatibility"><span class="typeNameLink">FeatureRequirement</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.compatibility.<a href="etomica/compatibility/RequirementSet.html" title="class in etomica.compatibility"><span class="typeNameLink">RequirementSet</span></a> (implements java.io.Serializable)</li>
</ul>
</li>
<li class="circle">etomica.util.<a href="etomica/util/Resources.html" title="class in etomica.util"><span class="typeNameLink">Resources</span></a></li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ReverseOsmosisGraphic.ModifierAtomDiameter.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ReverseOsmosisGraphic.ModifierAtomDiameter</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ReverseOsmosisGraphic.ModifierEpsilon.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ReverseOsmosisGraphic.ModifierEpsilon</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ReverseOsmosisWaterGraphic.ModifierAtomDiameter.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ReverseOsmosisWaterGraphic.ModifierAtomDiameter</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ReverseOsmosisWaterGraphic.ModifierEpsilon.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ReverseOsmosisWaterGraphic.ModifierEpsilon</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/ReverseOsmosisWaterGraphic.ModifierSoluteCharge.html" title="class in etomica.modules.rosmosis"><span class="typeNameLink">ReverseOsmosisWaterGraphic.ModifierSoluteCharge</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Rgb16.html" title="class in org.jmol.util"><span class="typeNameLink">Rgb16</span></a></li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/SamGraphic.ActionMoveWall.html" title="class in etomica.modules.sam"><span class="typeNameLink">SamGraphic.ActionMoveWall</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.modules.sam.<a href="etomica/modules/sam/SamGraphic.ModifierWallPosition.html" title="class in etomica.modules.sam"><span class="typeNameLink">SamGraphic.ModifierWallPosition</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">org.jmol.script.<a href="org/jmol/script/ScriptVariable.Sort.html" title="class in org.jmol.script"><span class="typeNameLink">ScriptVariable.Sort</span></a> (implements java.util.Comparator&lt;T&gt;)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/SetPropertyFilter.html" title="class in etomica.graph.operations"><span class="typeNameLink">SetPropertyFilter</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Shader.html" title="class in org.jmol.util"><span class="typeNameLink">Shader</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/ShapeParser.html" title="class in etomica.virial.simulations"><span class="typeNameLink">ShapeParser</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/ShapeParser.ShapeData.html" title="class in etomica.virial.simulations"><span class="typeNameLink">ShapeParser.ShapeData</span></a></li>
<li class="circle">etomica.server.representations.<a href="etomica/server/representations/SimClassInfo.html" title="class in etomica.server.representations"><span class="typeNameLink">SimClassInfo</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimOverlapLJModule.html" title="class in etomica.normalmode"><span class="typeNameLink">SimOverlapLJModule</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimOverlapLJModule.APIPotentialReference.html" title="class in etomica.normalmode"><span class="typeNameLink">SimOverlapLJModule.APIPotentialReference</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/IAPIPotential.html" title="interface in etomica.normalmode">IAPIPotential</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimOverlapLJModule.APIPotentialTarget.html" title="class in etomica.normalmode"><span class="typeNameLink">SimOverlapLJModule.APIPotentialTarget</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/IAPIPotential.html" title="interface in etomica.normalmode">IAPIPotential</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SimOverlapModule.html" title="class in etomica.normalmode"><span class="typeNameLink">SimOverlapModule</span></a></li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/SimpleElementForSimilarSpecies.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">SimpleElementForSimilarSpecies</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/SimpleUnit.html" title="class in etomica.units"><span class="typeNameLink">SimpleUnit</span></a> (implements etomica.units.<a href="etomica/units/Unit.html" title="interface in etomica.units">Unit</a>)
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<li class="circle">etomica.units.<a href="etomica/units/Ampere.html" title="class in etomica.units"><span class="typeNameLink">Ampere</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Angstrom.html" title="class in etomica.units"><span class="typeNameLink">Angstrom</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Bar.html" title="class in etomica.units"><span class="typeNameLink">Bar</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Barye.html" title="class in etomica.units"><span class="typeNameLink">Barye</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/BohrRadius.html" title="class in etomica.units"><span class="typeNameLink">BohrRadius</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Calorie.html" title="class in etomica.units"><span class="typeNameLink">Calorie</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Candela.html" title="class in etomica.units"><span class="typeNameLink">Candela</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Coulomb.html" title="class in etomica.units"><span class="typeNameLink">Coulomb</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Count.html" title="class in etomica.units"><span class="typeNameLink">Count</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/CubicCentimeter.html" title="class in etomica.units"><span class="typeNameLink">CubicCentimeter</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/CubicMeter.html" title="class in etomica.units"><span class="typeNameLink">CubicMeter</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Dalton.html" title="class in etomica.units"><span class="typeNameLink">Dalton</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Debye.html" title="class in etomica.units"><span class="typeNameLink">Debye</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Decimal.html" title="class in etomica.units"><span class="typeNameLink">Decimal</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Degree.html" title="class in etomica.units"><span class="typeNameLink">Degree</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Dyne.html" title="class in etomica.units"><span class="typeNameLink">Dyne</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Electron.html" title="class in etomica.units"><span class="typeNameLink">Electron</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/ElectronVolt.html" title="class in etomica.units"><span class="typeNameLink">ElectronVolt</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Erg.html" title="class in etomica.units"><span class="typeNameLink">Erg</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Gram.html" title="class in etomica.units"><span class="typeNameLink">Gram</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Hartree.html" title="class in etomica.units"><span class="typeNameLink">Hartree</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Hertz.html" title="class in etomica.units"><span class="typeNameLink">Hertz</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Joule.html" title="class in etomica.units"><span class="typeNameLink">Joule</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Kelvin.html" title="class in etomica.units"><span class="typeNameLink">Kelvin</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Liter.html" title="class in etomica.units"><span class="typeNameLink">Liter</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Meter.html" title="class in etomica.units"><span class="typeNameLink">Meter</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Mole.html" title="class in etomica.units"><span class="typeNameLink">Mole</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Newton.html" title="class in etomica.units"><span class="typeNameLink">Newton</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Pascal.html" title="class in etomica.units"><span class="typeNameLink">Pascal</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Percent.html" title="class in etomica.units"><span class="typeNameLink">Percent</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Picosecond.html" title="class in etomica.units"><span class="typeNameLink">Picosecond</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Pixel.html" title="class in etomica.units"><span class="typeNameLink">Pixel</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Poise.html" title="class in etomica.units"><span class="typeNameLink">Poise</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Radian.html" title="class in etomica.units"><span class="typeNameLink">Radian</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Second.html" title="class in etomica.units"><span class="typeNameLink">Second</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Statcoulomb.html" title="class in etomica.units"><span class="typeNameLink">Statcoulomb</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Volt.html" title="class in etomica.units"><span class="typeNameLink">Volt</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Watt.html" title="class in etomica.units"><span class="typeNameLink">Watt</span></a></li>
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</li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/Simulation.html" title="class in etomica.simulation"><span class="typeNameLink">Simulation</span></a>
<ul>
<li class="circle">etomica.modules.adsorption.<a href="etomica/modules/adsorption/Adsorption.html" title="class in etomica.modules.adsorption"><span class="typeNameLink">Adsorption</span></a></li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/AshtonWildingLJ.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">AshtonWildingLJ</span></a></li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/AshtonWildingOsmoticVirial.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">AshtonWildingOsmoticVirial</span></a></li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/AshtonWildingVirial.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">AshtonWildingVirial</span></a></li>
<li class="circle">etomica.modules.catalysis.<a href="etomica/modules/catalysis/Catalysis.html" title="class in etomica.modules.catalysis"><span class="typeNameLink">Catalysis</span></a></li>
<li class="circle">etomica.AlkaneEH.<a href="etomica/AlkaneEH/CH4NVT.html" title="class in etomica.AlkaneEH"><span class="typeNameLink">CH4NVT</span></a></li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/ChainEquilibriumSim.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">ChainEquilibriumSim</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.simulation.prototypes.<a href="etomica/simulation/prototypes/ChainHSMD3D.html" title="class in etomica.simulation.prototypes"><span class="typeNameLink">ChainHSMD3D</span></a></li>
<li class="circle">etomica.models.clathrates.<a href="etomica/models/clathrates/ClathrateHarmonicFE.html" title="class in etomica.models.clathrates"><span class="typeNameLink">ClathrateHarmonicFE</span></a></li>
<li class="circle">etomica.modules.colloid.<a href="etomica/modules/colloid/ColloidSim.html" title="class in etomica.modules.colloid"><span class="typeNameLink">ColloidSim</span></a></li>
<li class="circle">etomica.dcvgcmd.<a href="etomica/dcvgcmd/DCVGCMD.html" title="class in etomica.dcvgcmd"><span class="typeNameLink">DCVGCMD</span></a></li>
<li class="circle">etomica.modules.dcvgcmd.<a href="etomica/modules/dcvgcmd/DCVGCMD.html" title="class in etomica.modules.dcvgcmd"><span class="typeNameLink">DCVGCMD</span></a></li>
<li class="circle">etomica.AlkaneEH.<a href="etomica/AlkaneEH/DHS_NVT.html" title="class in etomica.AlkaneEH"><span class="typeNameLink">DHS_NVT</span></a></li>
<li class="circle">etomica.dielectric.<a href="etomica/dielectric/DHS_NVT.html" title="class in etomica.dielectric"><span class="typeNameLink">DHS_NVT</span></a></li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/DimerApproach.html" title="class in etomica.models.rowley"><span class="typeNameLink">DimerApproach</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/DipoleBox.html" title="class in etomica.rotation"><span class="typeNameLink">DipoleBox</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/DipoleBoxMatrix.html" title="class in etomica.rotation"><span class="typeNameLink">DipoleBoxMatrix</span></a></li>
<li class="circle">etomica.AlkaneEH.<a href="etomica/AlkaneEH/DLJ_NVT_1site.html" title="class in etomica.AlkaneEH"><span class="typeNameLink">DLJ_NVT_1site</span></a></li>
<li class="circle">etomica.dielectric.<a href="etomica/dielectric/DLJ_NVT_1site.html" title="class in etomica.dielectric"><span class="typeNameLink">DLJ_NVT_1site</span></a></li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/Droplet.html" title="class in etomica.modules.droplet"><span class="typeNameLink">Droplet</span></a></li>
<li class="circle">etomica.modules.droplet.<a href="etomica/modules/droplet/DropletAtomic.html" title="class in etomica.modules.droplet"><span class="typeNameLink">DropletAtomic</span></a></li>
<li class="circle">etomica.eam.<a href="etomica/eam/EFSTungsten.html" title="class in etomica.eam"><span class="typeNameLink">EFSTungsten</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/FindBetaN2AngleFromParameter.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">FindBetaN2AngleFromParameter</span></a></li>
<li class="circle">etomica.modules.chainequilibrium.<a href="etomica/modules/chainequilibrium/FreeRadicalPolymerizationSim.html" title="class in etomica.modules.chainequilibrium"><span class="typeNameLink">FreeRadicalPolymerizationSim</span></a> (implements etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom">AtomLeafAgentManager.AgentSource</a>&lt;E&gt;)</li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/GCRestrictedGibbsHS.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">GCRestrictedGibbsHS</span></a></li>
<li class="circle">etomica.osmoticvirial.<a href="etomica/osmoticvirial/GCWidomInsertHS.html" title="class in etomica.osmoticvirial"><span class="typeNameLink">GCWidomInsertHS</span></a></li>
<li class="circle">etomica.simulation.prototypes.<a href="etomica/simulation/prototypes/GEMCWithRotation.html" title="class in etomica.simulation.prototypes"><span class="typeNameLink">GEMCWithRotation</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicAlphaNitrogenModel.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicAlphaNitrogenModel</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicAlphaNitrogenModelDecomposed.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicAlphaNitrogenModelDecomposed</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicAlphaNitrogenModelLatticeSum.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicAlphaNitrogenModelLatticeSum</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicAlphaNitrogenModelPairMolecule.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicAlphaNitrogenModelPairMolecule</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicAlphaNitrogenModelPairMoleculeSequential.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicAlphaNitrogenModelPairMoleculeSequential</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicAlphaNitrogenModelPairMoleculeSequentialHalf2.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicAlphaNitrogenModelPairMoleculeSequentialHalf2</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicAlphaNitrogenModelPairMoleculeSequentialHalf2LS.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicAlphaNitrogenModelPairMoleculeSequentialHalf2LS</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicAlphaNitrogenModelPairMoleculeSequentialLS.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicAlphaNitrogenModelPairMoleculeSequentialLS</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/HarmonicBetaNitrogenModel.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">HarmonicBetaNitrogenModel</span></a></li>
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<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/SingleAssociationSiteFluid4Points.html" title="class in etomica.virial.simulations"><span class="typeNameLink">SingleAssociationSiteFluid4Points</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/SingleAssociationSiteFluid4Pt.html" title="class in etomica.virial.simulations"><span class="typeNameLink">SingleAssociationSiteFluid4Pt</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/SingleAssociationSiteFluidGraph.html" title="class in etomica.virial.simulations"><span class="typeNameLink">SingleAssociationSiteFluidGraph</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/SingleDipole.html" title="class in etomica.rotation"><span class="typeNameLink">SingleDipole</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/SingleDumbellRattle.html" title="class in etomica.rotation"><span class="typeNameLink">SingleDumbellRattle</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/SingleDumbellShake.html" title="class in etomica.rotation"><span class="typeNameLink">SingleDumbellShake</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/SingleWater.html" title="class in etomica.rotation"><span class="typeNameLink">SingleWater</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/SingleWaterMatrix.html" title="class in etomica.rotation"><span class="typeNameLink">SingleWaterMatrix</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/SingleWaterRattle.html" title="class in etomica.rotation"><span class="typeNameLink">SingleWaterRattle</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/SingleWaterShake.html" title="class in etomica.rotation"><span class="typeNameLink">SingleWaterShake</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SoftSphereSolidEOS.html" title="class in etomica.normalmode"><span class="typeNameLink">SoftSphereSolidEOS</span></a></li>
<li class="circle">etomica.space.<a href="etomica/space/Space.html" title="class in etomica.space"><span class="typeNameLink">Space</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">etomica.space1d.<a href="etomica/space1d/Space1D.html" title="class in etomica.space1d"><span class="typeNameLink">Space1D</span></a></li>
<li class="circle">etomica.space2d.<a href="etomica/space2d/Space2D.html" title="class in etomica.space2d"><span class="typeNameLink">Space2D</span></a></li>
<li class="circle">etomica.space3d.<a href="etomica/space3d/Space3D.html" title="class in etomica.space3d"><span class="typeNameLink">Space3D</span></a></li>
</ul>
</li>
<li class="circle">etomica.math.<a href="etomica/math/SpecialFunctions.html" title="class in etomica.math"><span class="typeNameLink">SpecialFunctions</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/Species7SiteRigidSF6.html" title="class in etomica.virial"><span class="typeNameLink">Species7SiteRigidSF6</span></a></li>
<li class="circle">etomica.models.OPLS.<a href="etomica/models/OPLS/SpeciesAceticAcid.html" title="class in etomica.models.OPLS"><span class="typeNameLink">SpeciesAceticAcid</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesAgentManager.html" title="class in etomica.species"><span class="typeNameLink">SpeciesAgentManager</span></a>&lt;E&gt;</li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesAlkane.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesAlkane</span></a></li>
<li class="circle">etomica.AlkaneEH.<a href="etomica/AlkaneEH/SpeciesAlkaneEH.html" title="class in etomica.AlkaneEH"><span class="typeNameLink">SpeciesAlkaneEH</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesAnthracene3site464.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesAnthracene3site464</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesAnthracene3site545.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesAnthracene3site545</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesBuilder.html" title="class in etomica.species"><span class="typeNameLink">SpeciesBuilder</span></a></li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/SpeciesEthanol.html" title="class in etomica.models.rowley"><span class="typeNameLink">SpeciesEthanol</span></a></li>
<li class="circle">etomica.models.traPPE.<a href="etomica/models/traPPE/SpeciesFactoryMethanol.html" title="class in etomica.models.traPPE"><span class="typeNameLink">SpeciesFactoryMethanol</span></a> (implements java.io.Serializable, etomica.virial.<a href="etomica/virial/SpeciesFactory.html" title="interface in etomica.virial">SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesFactorySpheres.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesFactorySpheres</span></a> (implements java.io.Serializable, etomica.virial.<a href="etomica/virial/SpeciesFactory.html" title="interface in etomica.virial">SpeciesFactory</a>)</li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesFactoryWaterGCPM.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesFactoryWaterGCPM</span></a> (implements java.io.Serializable, etomica.virial.<a href="etomica/virial/SpeciesFactory.html" title="interface in etomica.virial">SpeciesFactory</a>)</li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesFileParser.html" title="class in etomica.species"><span class="typeNameLink">SpeciesFileParser</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesGeneral.html" title="class in etomica.species"><span class="typeNameLink">SpeciesGeneral</span></a> (implements etomica.species.<a href="etomica/species/ISpecies.html" title="interface in etomica.species">ISpecies</a>)</li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesGeneralMutable.html" title="class in etomica.species"><span class="typeNameLink">SpeciesGeneralMutable</span></a> (implements etomica.species.<a href="etomica/species/ISpecies.html" title="interface in etomica.species">ISpecies</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/SpeciesHSDimer.html" title="class in etomica.normalmode"><span class="typeNameLink">SpeciesHSDimer</span></a></li>
<li class="circle">etomica.AlkaneEH.<a href="etomica/AlkaneEH/SpeciesMethane.html" title="class in etomica.AlkaneEH"><span class="typeNameLink">SpeciesMethane</span></a></li>
<li class="circle">etomica.models.rowley.<a href="etomica/models/rowley/SpeciesMethanol.html" title="class in etomica.models.rowley"><span class="typeNameLink">SpeciesMethanol</span></a></li>
<li class="circle">etomica.models.traPPE.<a href="etomica/models/traPPE/SpeciesMethanol.html" title="class in etomica.models.traPPE"><span class="typeNameLink">SpeciesMethanol</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/SpeciesN2.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">SpeciesN2</span></a></li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/SpeciesN2ShellModel.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">SpeciesN2ShellModel</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesPh3site464.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesPh3site464</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesPh3site545.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesPh3site545</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesPolyhedron.html" title="class in etomica.species"><span class="typeNameLink">SpeciesPolyhedron</span></a></li>
<li class="circle">etomica.starpolymer.<a href="etomica/starpolymer/SpeciesPolymerMono.html" title="class in etomica.starpolymer"><span class="typeNameLink">SpeciesPolymerMono</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesSpheresRotating.html" title="class in etomica.species"><span class="typeNameLink">SpeciesSpheresRotating</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesSpheresRotatingMolecule.html" title="class in etomica.species"><span class="typeNameLink">SpeciesSpheresRotatingMolecule</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesTraPPEAnthracene.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesTraPPEAnthracene</span></a></li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/SpeciesTraPPECO2.html" title="class in etomica.models.co2"><span class="typeNameLink">SpeciesTraPPECO2</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesTraPPENaphthalene.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesTraPPENaphthalene</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesTraPPEPhenanthrene.html" title="class in etomica.virial"><span class="typeNameLink">SpeciesTraPPEPhenanthrene</span></a></li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/SpeciesWater3P.html" title="class in etomica.models.water"><span class="typeNameLink">SpeciesWater3P</span></a></li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/SpeciesWater4P.html" title="class in etomica.models.water"><span class="typeNameLink">SpeciesWater4P</span></a></li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/SpeciesWater4PCOM.html" title="class in etomica.models.water"><span class="typeNameLink">SpeciesWater4PCOM</span></a></li>
<li class="circle">org.jmol.g3d.<a href="org/jmol/g3d/SphereRenderer.html" title="class in org.jmol.g3d"><span class="typeNameLink">SphereRenderer</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Split.html" title="class in etomica.graph.operations"><span class="typeNameLink">Split</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/SplitGraph.html" title="class in etomica.graph.operations"><span class="typeNameLink">SplitGraph</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/SplitOne.html" title="class in etomica.graph.operations"><span class="typeNameLink">SplitOne</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/SplitOne.SplitOneParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">SplitOne.SplitOneParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)
<ul>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/SplitOneBiconnected.SplitOneParametersBC.html" title="class in etomica.graph.operations"><span class="typeNameLink">SplitOneBiconnected.SplitOneParametersBC</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/SplitOneBiconnected.html" title="class in etomica.graph.operations"><span class="typeNameLink">SplitOneBiconnected</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/SplitParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">SplitParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/Standard.html" title="class in etomica.virial.cluster"><span class="typeNameLink">Standard</span></a></li>
<li class="circle">org.jmol.constant.<a href="org/jmol/constant/StaticConstants.html" title="class in org.jmol.constant"><span class="typeNameLink">StaticConstants</span></a></li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/StatisticsMCGraphic.HistoryPlotBits.html" title="class in etomica.modules.statistics"><span class="typeNameLink">StatisticsMCGraphic.HistoryPlotBits</span></a></li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/StatisticsMCGraphic.MyFunctionInvertible.html" title="class in etomica.modules.statistics"><span class="typeNameLink">StatisticsMCGraphic.MyFunctionInvertible</span></a> (implements etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function">FunctionDifferentiable</a>, etomica.math.function.<a href="etomica/math/function/FunctionInvertible.html" title="interface in etomica.math.function">FunctionInvertible</a>)</li>
<li class="circle">etomica.server.representations.<a href="etomica/server/representations/StatusAction.html" title="class in etomica.server.representations"><span class="typeNameLink">StatusAction</span></a></li>
<li class="circle">etomica.math.numerical.<a href="etomica/math/numerical/SteepestDescent.html" title="class in etomica.math.numerical"><span class="typeNameLink">SteepestDescent</span></a></li>
<li class="circle">etomica.graph.iterators.<a href="etomica/graph/iterators/StoredIterator.html" title="class in etomica.graph.iterators"><span class="typeNameLink">StoredIterator</span></a> (implements etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model">GraphIterator</a>)</li>
<li class="circle">etomica.util.<a href="etomica/util/Strings.html" title="class in etomica.util"><span class="typeNameLink">Strings</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/StringXBuilder.html" title="class in org.jmol.util"><span class="typeNameLink">StringXBuilder</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/StructorFactorComponentExtractor.html" title="class in etomica.modules.glass"><span class="typeNameLink">StructorFactorComponentExtractor</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/StructureFactorComponentCorrelation.html" title="class in etomica.modules.glass"><span class="typeNameLink">StructureFactorComponentCorrelation</span></a> (implements etomica.modules.glass.<a href="etomica/modules/glass/DataSinkBlockAveragerSFac.Sink.html" title="interface in etomica.modules.glass">DataSinkBlockAveragerSFac.Sink</a>, etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data">DataSourceIndependent</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/StructureFactorComponentCorrelation.Meter.html" title="class in etomica.modules.glass"><span class="typeNameLink">StructureFactorComponentCorrelation.Meter</span></a> (implements etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data">IDataSource</a>)</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/StructureFactorComponentCorrelation.Sink.html" title="class in etomica.modules.glass"><span class="typeNameLink">StructureFactorComponentCorrelation.Sink</span></a> (implements etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data">IDataSink</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Sub.html" title="class in etomica.graph.operations"><span class="typeNameLink">Sub</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Sum.html" title="class in etomica.graph.operations"><span class="typeNameLink">Sum</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverter.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">SVGConverter</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverter.SVGFileFilter.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">SVGConverter.SVGFileFilter</span></a> (implements java.io.FileFilter)</li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterDocumentSource.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">SVGConverterDocumentSource</span></a> (implements etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterSource.html" title="interface in etomica.graph.view.rasterizer">SVGConverterSource</a>)</li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterFileSource.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">SVGConverterFileSource</span></a> (implements etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterSource.html" title="interface in etomica.graph.view.rasterizer">SVGConverterSource</a>)</li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterURLSource.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">SVGConverterURLSource</span></a> (implements etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterSource.html" title="interface in etomica.graph.view.rasterizer">SVGConverterSource</a>)</li>
<li class="circle">etomica.modules.swmd.<a href="etomica/modules/swmd/SwmdGraphic.ModifierAtomDiameter.html" title="class in etomica.modules.swmd"><span class="typeNameLink">SwmdGraphic.ModifierAtomDiameter</span></a> (implements etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier">Modifier</a>)</li>
<li class="circle">etomica.space1d.<a href="etomica/space1d/Tensor1D.html" title="class in etomica.space1d"><span class="typeNameLink">Tensor1D</span></a> (implements java.io.Serializable, etomica.space.<a href="etomica/space/Tensor.html" title="interface in etomica.space">Tensor</a>)
<ul>
<li class="circle">etomica.space1d.<a href="etomica/space1d/RotationTensor1D.html" title="class in etomica.space1d"><span class="typeNameLink">RotationTensor1D</span></a> (implements etomica.space.<a href="etomica/space/RotationTensor.html" title="interface in etomica.space">RotationTensor</a>)</li>
</ul>
</li>
<li class="circle">etomica.space2d.<a href="etomica/space2d/Tensor2D.html" title="class in etomica.space2d"><span class="typeNameLink">Tensor2D</span></a> (implements java.io.Serializable, etomica.space.<a href="etomica/space/Tensor.html" title="interface in etomica.space">Tensor</a>)
<ul>
<li class="circle">etomica.space2d.<a href="etomica/space2d/RotationTensor2D.html" title="class in etomica.space2d"><span class="typeNameLink">RotationTensor2D</span></a> (implements etomica.space.<a href="etomica/space/RotationTensor.html" title="interface in etomica.space">RotationTensor</a>)</li>
</ul>
</li>
<li class="circle">etomica.space3d.<a href="etomica/space3d/Tensor3D.html" title="class in etomica.space3d"><span class="typeNameLink">Tensor3D</span></a> (implements java.io.Serializable, etomica.space.<a href="etomica/space/Tensor.html" title="interface in etomica.space">Tensor</a>)
<ul>
<li class="circle">etomica.space3d.<a href="etomica/space3d/RotationTensor3D.html" title="class in etomica.space3d"><span class="typeNameLink">RotationTensor3D</span></a> (implements etomica.space.<a href="etomica/space/RotationTensor.html" title="interface in etomica.space">RotationTensor</a>)</li>
</ul>
</li>
<li class="circle">etomica.spaceNd.<a href="etomica/spaceNd/TensorND.html" title="class in etomica.spaceNd"><span class="typeNameLink">TensorND</span></a> (implements etomica.space.<a href="etomica/space/Tensor.html" title="interface in etomica.space">Tensor</a>)</li>
<li class="circle">etomica.models.nitrogen.<a href="etomica/models/nitrogen/TestRotationVector.html" title="class in etomica.models.nitrogen"><span class="typeNameLink">TestRotationVector</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/TextFormat.html" title="class in org.jmol.util"><span class="typeNameLink">TextFormat</span></a></li>
<li class="circle">java.lang.Thread (implements java.lang.Runnable)
<ul>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialHSBinMultiThreaded.SimulationWorker.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialHSBinMultiThreaded.SimulationWorker</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialSQWBinMultiThreaded.SimulationWorker.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialSQWBinMultiThreaded.SimulationWorker</span></a></li>
</ul>
</li>
<li class="circle">java.lang.Throwable (implements java.io.Serializable)
<ul>
<li class="circle">java.lang.Exception
<ul>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ExceptionDoNotRemoveSpecies.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">ExceptionDoNotRemoveSpecies</span></a></li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ExceptionSameSpeciesSamePotential.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">ExceptionSameSpeciesSamePotential</span></a></li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ExceptionSingleSiteAtomicPotential.html" title="class in etomica.virial.GUI.components"><span class="typeNameLink">ExceptionSingleSiteAtomicPotential</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Interpreter.InterpreterException.html" title="class in etomica.graph.engine"><span class="typeNameLink">Interpreter.InterpreterException</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.ParserException.html" title="class in etomica.graph.engine"><span class="typeNameLink">Parser.ParserException</span></a></li>
<li class="circle">java.lang.RuntimeException
<ul>
<li class="circle">etomica.exception.<a href="etomica/exception/AbnormalCompletionException.html" title="class in etomica.exception"><span class="typeNameLink">AbnormalCompletionException</span></a></li>
<li class="circle">etomica.exception.<a href="etomica/exception/ConfigurationOverlapException.html" title="class in etomica.exception"><span class="typeNameLink">ConfigurationOverlapException</span></a></li>
<li class="circle">etomica.exception.<a href="etomica/exception/MethodNotImplementedException.html" title="class in etomica.exception"><span class="typeNameLink">MethodNotImplementedException</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterException.html" title="class in etomica.graph.view.rasterizer"><span class="typeNameLink">SVGConverterException</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.dielectric.<a href="etomica/dielectric/TIP4P_NVT.DipoleSourceTIP4PWater.html" title="class in etomica.dielectric"><span class="typeNameLink">TIP4P_NVT.DipoleSourceTIP4PWater</span></a> (implements etomica.molecule.<a href="etomica/molecule/DipoleSource.html" title="interface in etomica.molecule">DipoleSource</a>)</li>
<li class="circle">org.jmol.script.<a href="org/jmol/script/Token.html" title="class in org.jmol.script"><span class="typeNameLink">Token</span></a>
<ul>
<li class="circle">org.jmol.script.<a href="org/jmol/script/ScriptVariable.html" title="class in org.jmol.script"><span class="typeNameLink">ScriptVariable</span></a>
<ul>
<li class="circle">org.jmol.script.<a href="org/jmol/script/ScriptVariableInt.html" title="class in org.jmol.script"><span class="typeNameLink">ScriptVariableInt</span></a></li>
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<li class="circle">g3dsys.control.<a href="g3dsys/control/TransformManager.html" title="class in g3dsys.control"><span class="typeNameLink">TransformManager</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/TreeLinker.html" title="class in etomica.util"><span class="typeNameLink">TreeLinker</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/TreeList.html" title="class in etomica.util"><span class="typeNameLink">TreeList</span></a> (implements java.io.Serializable)</li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/TriangleData.html" title="class in org.jmol.util"><span class="typeNameLink">TriangleData</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Tuple3f.html" title="class in org.jmol.util"><span class="typeNameLink">Tuple3f</span></a> (implements java.io.Serializable)
<ul>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Point3f.html" title="class in org.jmol.util"><span class="typeNameLink">Point3f</span></a>
<ul>
<li class="circle">org.jmol.util.<a href="org/jmol/util/Point3fi.html" title="class in org.jmol.util"><span class="typeNameLink">Point3fi</span></a></li>
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<li class="circle">org.jmol.util.<a href="org/jmol/util/Vector3f.html" title="class in org.jmol.util"><span class="typeNameLink">Vector3f</span></a></li>
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<li class="circle">org.jmol.util.<a href="org/jmol/util/Tuple3i.html" title="class in org.jmol.util"><span class="typeNameLink">Tuple3i</span></a> (implements java.io.Serializable)
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<li class="circle">org.jmol.util.<a href="org/jmol/util/Point3i.html" title="class in org.jmol.util"><span class="typeNameLink">Point3i</span></a></li>
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<li class="circle">org.jmol.util.<a href="org/jmol/util/Tuple4f.html" title="class in org.jmol.util"><span class="typeNameLink">Tuple4f</span></a> (implements java.io.Serializable)
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<li class="circle">org.jmol.util.<a href="org/jmol/util/Point4f.html" title="class in org.jmol.util"><span class="typeNameLink">Point4f</span></a></li>
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<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/UnaryChain.ChainParameters.html" title="class in etomica.graph.operations"><span class="typeNameLink">UnaryChain.ChainParameters</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations">Parameters</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/UnaryOpImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">UnaryOpImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOp.html" title="interface in etomica.graph.engine">Parser.UnaryOp</a>)
<ul>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/UnaryOpByteImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">UnaryOpByteImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpByte.html" title="interface in etomica.graph.engine">Parser.UnaryOpByte</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/UnaryOpByteMapImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">UnaryOpByteMapImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpByteMap.html" title="interface in etomica.graph.engine">Parser.UnaryOpByteMap</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/UnaryOpColorImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">UnaryOpColorImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpColor.html" title="interface in etomica.graph.engine">Parser.UnaryOpColor</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/UnaryOpThreeColorImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">UnaryOpThreeColorImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpThreeColor.html" title="interface in etomica.graph.engine">Parser.UnaryOpThreeColor</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/UnaryOpTwoByteImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">UnaryOpTwoByteImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpTwoByte.html" title="interface in etomica.graph.engine">Parser.UnaryOpTwoByte</a>)</li>
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<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Unfactor.html" title="class in etomica.graph.operations"><span class="typeNameLink">Unfactor</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations">Unary</a>)</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Union.html" title="class in etomica.graph.operations"><span class="typeNameLink">Union</span></a> (implements etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations">Binary</a>)</li>
<li class="circle">etomica.units.gui.<a href="etomica/units/gui/UnitFilter.html" title="class in etomica.units.gui"><span class="typeNameLink">UnitFilter</span></a></li>
<li class="circle">etomica.units.gui.<a href="etomica/units/gui/UnitGraphics.html" title="class in etomica.units.gui"><span class="typeNameLink">UnitGraphics</span></a></li>
<li class="circle">etomica.units.systems.<a href="etomica/units/systems/UnitSystem.html" title="class in etomica.units.systems"><span class="typeNameLink">UnitSystem</span></a>
<ul>
<li class="circle">etomica.units.systems.<a href="etomica/units/systems/CGS.html" title="class in etomica.units.systems"><span class="typeNameLink">CGS</span></a></li>
<li class="circle">etomica.units.systems.<a href="etomica/units/systems/LJ.html" title="class in etomica.units.systems"><span class="typeNameLink">LJ</span></a></li>
<li class="circle">etomica.units.systems.<a href="etomica/units/systems/MKS.html" title="class in etomica.units.systems"><span class="typeNameLink">MKS</span></a></li>
<li class="circle">etomica.units.systems.<a href="etomica/units/systems/UnitSystem.Sim.html" title="class in etomica.units.systems"><span class="typeNameLink">UnitSystem.Sim</span></a></li>
</ul>
</li>
<li class="circle">etomica.veos.<a href="etomica/veos/Ushcats.html" title="class in etomica.veos"><span class="typeNameLink">Ushcats</span></a></li>
<li class="circle">etomica.liquidLJ.<a href="etomica/liquidLJ/ValueCache.html" title="class in etomica.liquidLJ"><span class="typeNameLink">ValueCache</span></a></li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/ValueImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">ValueImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.Value.html" title="interface in etomica.graph.engine">Parser.Value</a>)</li>
<li class="circle">etomica.veos.<a href="etomica/veos/VanderWaals.html" title="class in etomica.veos"><span class="typeNameLink">VanderWaals</span></a> (implements etomica.veos.<a href="etomica/veos/BetaSource.html" title="interface in etomica.veos">BetaSource</a>)</li>
<li class="circle">etomica.graph.engine.impl.<a href="etomica/graph/engine/impl/VariableImpl.html" title="class in etomica.graph.engine.impl"><span class="typeNameLink">VariableImpl</span></a> (implements etomica.graph.engine.<a href="etomica/graph/engine/Parser.Variable.html" title="interface in etomica.graph.engine">Parser.Variable</a>)</li>
<li class="circle">etomica.space1d.<a href="etomica/space1d/Vector1D.html" title="class in etomica.space1d"><span class="typeNameLink">Vector1D</span></a> (implements java.io.Serializable, etomica.space.<a href="etomica/space/Vector.html" title="interface in etomica.space">Vector</a>)</li>
<li class="circle">etomica.space2d.<a href="etomica/space2d/Vector2D.html" title="class in etomica.space2d"><span class="typeNameLink">Vector2D</span></a> (implements java.io.Serializable, etomica.space.<a href="etomica/space/Vector.html" title="interface in etomica.space">Vector</a>)</li>
<li class="circle">etomica.space3d.<a href="etomica/space3d/Vector3D.html" title="class in etomica.space3d"><span class="typeNameLink">Vector3D</span></a> (implements java.io.Serializable, etomica.space.<a href="etomica/space/Vector.html" title="interface in etomica.space">Vector</a>)</li>
<li class="circle">etomica.spaceNd.<a href="etomica/spaceNd/VectorND.html" title="class in etomica.spaceNd"><span class="typeNameLink">VectorND</span></a> (implements java.io.Serializable, etomica.space.<a href="etomica/space/Vector.html" title="interface in etomica.space">Vector</a>)</li>
<li class="circle">etomica.meta.properties.<a href="etomica/meta/properties/VectorProperty.html" title="class in etomica.meta.properties"><span class="typeNameLink">VectorProperty</span></a> (implements etomica.meta.properties.<a href="etomica/meta/properties/Property.html" title="interface in etomica.meta.properties">Property</a>)</li>
<li class="circle">etomica.polydisperseHS.<a href="etomica/polydisperseHS/VelocityWriter.html" title="class in etomica.polydisperseHS"><span class="typeNameLink">VelocityWriter</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/Virial2CLJmuQ.html" title="class in etomica.virial.simulations"><span class="typeNameLink">Virial2CLJmuQ</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/Virial2CLJQ.html" title="class in etomica.virial.simulations"><span class="typeNameLink">Virial2CLJQ</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/Virial7SiteRigidSF6.html" title="class in etomica.virial.simulations"><span class="typeNameLink">Virial7SiteRigidSF6</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAceticAcid.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAceticAcid</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAceticAcidFlex.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAceticAcidFlex</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkane.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkane</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkaneEHTest.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkaneEHTest</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkaneFlex.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkaneFlex</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkaneFull.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkaneFull</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkaneMix.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkaneMix</span></a>
<ul>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkaneMix_Kong.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkaneMix_Kong</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkaneMix2.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkaneMix2</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkaneMix2_Kong.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkaneMix2_Kong</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAlkaneSKS.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAlkaneSKS</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAnthracene464.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAnthracene464</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAnthracene545.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAnthracene545</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAnthraceneTraPPE.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAnthraceneTraPPE</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAssociatingFluid.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAssociatingFluid</span></a>
<ul>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialAssociatingFluid4points.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialAssociatingFluid4points</span></a></li>
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</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB2WaterTIP4P_DHS_difference.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB2WaterTIP4P_DHS_difference</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB2WaterTIP4P_DHS_difference.MuDeltaEBond.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB2WaterTIP4P_DHS_difference.MuDeltaEBond</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB3C1HSDipole.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB3C1HSDipole</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB3C1TIP4Pwater.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB3C1TIP4Pwater</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB3C1TIP4Pwater.MuFBond.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB3C1TIP4Pwater.MuFBond</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>)</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB3C2HSDipole.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB3C2HSDipole</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB3C2TIP4Pwater.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB3C2TIP4Pwater</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB3C2TIP4Pwater.fPlusBetaEU.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB3C2TIP4Pwater.fPlusBetaEU</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialB3C2TIP4Pwater.MuProduct.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialB3C2TIP4Pwater.MuProduct</span></a> (implements etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial">MayerFunction</a>, java.io.Serializable)</li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCH4AlkaneEHMix.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCH4AlkaneEHMix</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2AlkaneEHMix.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2AlkaneEHMix</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2AlkaneUAMix.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2AlkaneUAMix</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2anthracene464.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2anthracene464</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2anthracene545.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2anthracene545</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2AnthraceneTraPPE.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2AnthraceneTraPPE</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2CH4Mix.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2CH4Mix</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2CH4UAMix.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2CH4UAMix</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2CH4UAMixWheatley.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2CH4UAMixWheatley</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2H2OGCPM.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2H2OGCPM</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2H2OGCPMX.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2H2OGCPMX</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2H2OSC.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2H2OSC</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2LJQ.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2LJQ</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2N2Mix.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2N2Mix</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2NaphthaleneLJQ.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2NaphthaleneLJQ</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2NaphthaleneTraPPE.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2NaphthaleneTraPPE</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2PI.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2PI</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2SKSMix.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2SKSMix</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCO2TraPPE.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCO2TraPPE</span></a></li>
<li class="circle">etomica.virial.simulations.<a href="etomica/virial/simulations/VirialCPSHeliumNonAdditive.html" title="class in etomica.virial.simulations"><span class="typeNameLink">VirialCPSHeliumNonAdditive</span></a></li>
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<li class="circle">etomica.rotation.<a href="etomica/rotation/WaterTrimerRattle.html" title="class in etomica.rotation"><span class="typeNameLink">WaterTrimerRattle</span></a></li>
<li class="circle">etomica.rotation.<a href="etomica/rotation/WaterTrimerShake.html" title="class in etomica.rotation"><span class="typeNameLink">WaterTrimerShake</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactory1D.html" title="class in etomica.normalmode"><span class="typeNameLink">WaveVectorFactory1D</span></a> (implements java.io.Serializable, etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactory.html" title="interface in etomica.normalmode">WaveVectorFactory</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactory2D.html" title="class in etomica.normalmode"><span class="typeNameLink">WaveVectorFactory2D</span></a> (implements java.io.Serializable, etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactory.html" title="interface in etomica.normalmode">WaveVectorFactory</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactoryFcc.html" title="class in etomica.normalmode"><span class="typeNameLink">WaveVectorFactoryFcc</span></a> (implements java.io.Serializable, etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactory.html" title="interface in etomica.normalmode">WaveVectorFactory</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactoryFromFile.html" title="class in etomica.normalmode"><span class="typeNameLink">WaveVectorFactoryFromFile</span></a> (implements etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactory.html" title="interface in etomica.normalmode">WaveVectorFactory</a>)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactorySimple.html" title="class in etomica.normalmode"><span class="typeNameLink">WaveVectorFactorySimple</span></a> (implements java.io.Serializable, etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactory.html" title="interface in etomica.normalmode">WaveVectorFactory</a>)
<ul>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactorySuperBox.html" title="class in etomica.normalmode"><span class="typeNameLink">WaveVectorFactorySuperBox</span></a></li>
</ul>
</li>
<li class="circle">etomica.association.AceticAcid.<a href="etomica/association/AceticAcid/Wertheim2SiteAceticAcid.html" title="class in etomica.association.AceticAcid"><span class="typeNameLink">Wertheim2SiteAceticAcid</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/WertheimDiagrams2SiteRho.html" title="class in etomica.virial.cluster"><span class="typeNameLink">WertheimDiagrams2SiteRho</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/WertheimDiagrams3SiteRho.html" title="class in etomica.virial.cluster"><span class="typeNameLink">WertheimDiagrams3SiteRho</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM3PtEBondDecomp.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM3PtEBondDecomp</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM3PtThreeSite.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM3PtThreeSite</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM4PtEBondDecomp.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM4PtEBondDecomp</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM4PtEBondDecompFinal.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM4PtEBondDecompFinal</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM4PtThreeSite.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM4PtThreeSite</span></a></li>
<li class="circle">etomica.association.GCPMWater.<a href="etomica/association/GCPMWater/WertheimGCPM4PtThreeSiteEDecompDirectSampling.html" title="class in etomica.association.GCPMWater"><span class="typeNameLink">WertheimGCPM4PtThreeSiteEDecompDirectSampling</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/Wigner3j.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">Wigner3j</span></a></li>
<li class="circle">etomica.veos.bigdecimal.<a href="etomica/veos/bigdecimal/Wigner3jGUI.html" title="class in etomica.veos.bigdecimal"><span class="typeNameLink">Wigner3jGUI</span></a> (implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener)</li>
<li class="circle">java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
<ul>
<li class="circle">etomica.virial.GUI.views.<a href="etomica/virial/GUI/views/ViewConsoleOutputBox.html" title="class in etomica.virial.GUI.views"><span class="typeNameLink">ViewConsoleOutputBox</span></a> (implements java.awt.event.ActionListener, java.lang.Runnable, java.awt.event.WindowListener)</li>
</ul>
</li>
<li class="circle">etomica.meta.wrappers.<a href="etomica/meta/wrappers/Wrapper.html" title="class in etomica.meta.wrappers"><span class="typeNameLink">Wrapper</span></a>&lt;T&gt;
<ul>
<li class="circle">etomica.meta.wrappers.<a href="etomica/meta/wrappers/ObjectWrapper.html" title="class in etomica.meta.wrappers"><span class="typeNameLink">ObjectWrapper</span></a>&lt;T&gt;
<ul>
<li class="circle">etomica.meta.wrappers.<a href="etomica/meta/wrappers/SimulationWrapper.html" title="class in etomica.meta.wrappers"><span class="typeNameLink">SimulationWrapper</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.meta.<a href="etomica/meta/WrapperIndex.html" title="class in etomica.meta"><span class="typeNameLink">WrapperIndex</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/WriteConfiguration.html" title="class in etomica.action"><span class="typeNameLink">WriteConfiguration</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)
<ul>
<li class="circle">etomica.interfacial.<a href="etomica/interfacial/WriteConfigurationInterfacial.html" title="class in etomica.interfacial"><span class="typeNameLink">WriteConfigurationInterfacial</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/WriteConfigurationOriented.html" title="class in etomica.action"><span class="typeNameLink">WriteConfigurationOriented</span></a></li>
</ul>
</li>
<li class="circle">etomica.action.<a href="etomica/action/WriteConfigurationBinary.html" title="class in etomica.action"><span class="typeNameLink">WriteConfigurationBinary</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/WriteConfigurationDLPOLY.html" title="class in etomica.action"><span class="typeNameLink">WriteConfigurationDLPOLY</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/WriteConfigurationP2DLPOLY.html" title="class in etomica.action"><span class="typeNameLink">WriteConfigurationP2DLPOLY</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.util.<a href="etomica/util/WriteParameters.html" title="class in etomica.util"><span class="typeNameLink">WriteParameters</span></a> (implements java.io.Serializable)</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/WriteS.html" title="class in etomica.normalmode"><span class="typeNameLink">WriteS</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>)</li>
<li class="circle">etomica.action.<a href="etomica/action/XYZWriter.html" title="class in etomica.action"><span class="typeNameLink">XYZWriter</span></a> (implements etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action">IAction</a>, java.io.Serializable)</li>
<li class="circle">etomica.zeolite.<a href="etomica/zeolite/Zeolite.html" title="class in etomica.zeolite"><span class="typeNameLink">Zeolite</span></a></li>
</ul>
</li>
</ul>
<h2 title="Interface Hierarchy">Interface Hierarchy</h2>
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/AbstractLattice.html" title="interface in etomica.lattice"><span class="typeNameLink">AbstractLattice</span></a>&lt;T&gt;
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/FiniteLattice.html" title="interface in etomica.lattice"><span class="typeNameLink">FiniteLattice</span></a>&lt;T&gt;</li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/SpaceLattice.html" title="interface in etomica.lattice"><span class="typeNameLink">SpaceLattice</span></a>
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/CubicLattice.html" title="interface in etomica.lattice"><span class="typeNameLink">CubicLattice</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/AccumulatorAverageBootstrap.HistogramFactory.html" title="interface in etomica.data"><span class="typeNameLink">AccumulatorAverageBootstrap.HistogramFactory</span></a></li>
<li class="circle">etomica.modules.statistics.<a href="etomica/modules/statistics/AccumulatorFactory.html" title="interface in etomica.modules.statistics"><span class="typeNameLink">AccumulatorFactory</span></a></li>
<li class="circle">etomica.overlap.<a href="etomica/overlap/AlphaSource.html" title="interface in etomica.overlap"><span class="typeNameLink">AlphaSource</span></a></li>
<li class="circle">org.jmol.api.<a href="org/jmol/api/ApiPlatform.html" title="interface in org.jmol.api"><span class="typeNameLink">ApiPlatform</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/AssociationDefinition.html" title="interface in etomica.association"><span class="typeNameLink">AssociationDefinition</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/AssociationDefinitionMolecule.html" title="interface in etomica.association"><span class="typeNameLink">AssociationDefinitionMolecule</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/AtomAction.html" title="interface in etomica.action"><span class="typeNameLink">AtomAction</span></a></li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomLeafAgentManager.AgentSource.html" title="interface in etomica.atom"><span class="typeNameLink">AtomLeafAgentManager.AgentSource</span></a>&lt;E&gt;</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIterator.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomsetIterator</span></a>
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomLeafsetIterator.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomLeafsetIterator</span></a>
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIterator.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomIterator</span></a>
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorAtomDependent.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorAtomDependent</span></a></li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBasisDependent.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorBasisDependent</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBasisDependent</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBoxDependent.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorBoxDependent</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBoxDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBoxDependent</a>)</li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBoxDependent.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomsetIteratorBoxDependent</span></a>
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBoxDependent.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorBoxDependent</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIterator.html" title="interface in etomica.atom.iterator">AtomIterator</a>)</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorPDT.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomsetIteratorPDT</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorTargetable.html" title="interface in etomica.atom.iterator">AtomsetIteratorTargetable</a>)</li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorTargetable.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomsetIteratorTargetable</span></a>
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBasisDependent.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomsetIteratorBasisDependent</span></a>
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIteratorBasisDependent.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomIteratorBasisDependent</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomIterator.html" title="interface in etomica.atom.iterator">AtomIterator</a>)</li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorPDT.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomsetIteratorPDT</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBoxDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBoxDependent</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomsetIteratorDirectable</span></a>
<ul>
<li class="circle">etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorPDT.html" title="interface in etomica.atom.iterator"><span class="typeNameLink">AtomsetIteratorPDT</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorBoxDependent.html" title="interface in etomica.atom.iterator">AtomsetIteratorBoxDependent</a>, etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorTargetable.html" title="interface in etomica.atom.iterator">AtomsetIteratorTargetable</a>)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculesetIteratorPDT</span></a> (also extends etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorBoxDependent.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorBoxDependent</a>, etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorTargetable.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorTargetable</a>)</li>
</ul>
</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIterator.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculesetIterator</span></a>
<ul>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIterator.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIterator</span></a>
<ul>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorBoxDependent.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorBoxDependent</span></a> (also extends etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorBoxDependent.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorBoxDependent</a>)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorMoleculeDependent.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorMoleculeDependent</span></a></li>
</ul>
</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorBoxDependent.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculesetIteratorBoxDependent</span></a>
<ul>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIteratorBoxDependent.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculeIteratorBoxDependent</span></a> (also extends etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculeIterator.html" title="interface in etomica.molecule.iterator">MoleculeIterator</a>)</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculesetIteratorPDT</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>, etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorTargetable.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorTargetable</a>)</li>
</ul>
</li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorTargetable.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculesetIteratorTargetable</span></a>
<ul>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorBasisDependent.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculesetIteratorBasisDependent</span></a></li>
<li class="circle">etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorPDT.html" title="interface in etomica.molecule.iterator"><span class="typeNameLink">MoleculesetIteratorPDT</span></a> (also extends etomica.atom.iterator.<a href="etomica/atom/iterator/AtomsetIteratorDirectable.html" title="interface in etomica.atom.iterator">AtomsetIteratorDirectable</a>, etomica.molecule.iterator.<a href="etomica/molecule/iterator/MoleculesetIteratorBoxDependent.html" title="interface in etomica.molecule.iterator">MoleculesetIteratorBoxDependent</a>)</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.nbr.cell.<a href="etomica/nbr/cell/AtomsetIteratorCellular.html" title="interface in etomica.nbr.cell"><span class="typeNameLink">AtomsetIteratorCellular</span></a></li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomSource.html" title="interface in etomica.atom"><span class="typeNameLink">AtomSource</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/AtomStressSource.html" title="interface in etomica.modules.glass"><span class="typeNameLink">AtomStressSource</span></a></li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomToAtomLeafList.html" title="interface in etomica.atom"><span class="typeNameLink">AtomToAtomLeafList</span></a></li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomToIndex.html" title="interface in etomica.atom"><span class="typeNameLink">AtomToIndex</span></a></li>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomTypeAgentManager.AgentSource.html" title="interface in etomica.atom"><span class="typeNameLink">AtomTypeAgentManager.AgentSource</span></a>&lt;E&gt;</li>
<li class="circle">etomica.<a href="etomica/BenchBox.IVecSys.html" title="interface in etomica"><span class="typeNameLink">BenchBox.IVecSys</span></a></li>
<li class="circle">etomica.veos.<a href="etomica/veos/BetaSource.html" title="interface in etomica.veos"><span class="typeNameLink">BetaSource</span></a></li>
<li class="circle">java.util.function.BiConsumer&lt;T,U&gt;
<ul>
<li class="circle">etomica.nbr.<a href="etomica/nbr/NeighborIterator.AtomPairConsumer.html" title="interface in etomica.nbr"><span class="typeNameLink">NeighborIterator.AtomPairConsumer</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Binary.html" title="interface in etomica.graph.operations"><span class="typeNameLink">Binary</span></a></li>
<li class="circle">etomica.space.<a href="etomica/space/BoundaryEventListener.html" title="interface in etomica.space"><span class="typeNameLink">BoundaryEventListener</span></a></li>
<li class="circle">etomica.box.<a href="etomica/box/BoxAgentManager.BoxAgentSource.html" title="interface in etomica.box"><span class="typeNameLink">BoxAgentManager.BoxAgentSource</span></a>&lt;E&gt;</li>
<li class="circle">etomica.box.<a href="etomica/box/BoxCellManager.html" title="interface in etomica.box"><span class="typeNameLink">BoxCellManager</span></a></li>
<li class="circle">etomica.box.<a href="etomica/box/BoxEventListener.html" title="interface in etomica.box"><span class="typeNameLink">BoxEventListener</span></a></li>
<li class="circle">java.lang.Cloneable
<ul>
<li class="circle">etomica.space.<a href="etomica/space/Tensor.html" title="interface in etomica.space"><span class="typeNameLink">Tensor</span></a>
<ul>
<li class="circle">etomica.space.<a href="etomica/space/RotationTensor.html" title="interface in etomica.space"><span class="typeNameLink">RotationTensor</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterAbstract.html" title="interface in etomica.virial"><span class="typeNameLink">ClusterAbstract</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterAbstractMultivalue.html" title="interface in etomica.virial"><span class="typeNameLink">ClusterAbstractMultivalue</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWeight.html" title="interface in etomica.virial"><span class="typeNameLink">ClusterWeight</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWheatley.html" title="interface in etomica.virial"><span class="typeNameLink">ClusterWheatley</span></a></li>
</ul>
</li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterSumAssociation.ClusterCriteria.html" title="interface in etomica.virial"><span class="typeNameLink">ClusterSumAssociation.ClusterCriteria</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWeight.Factory.html" title="interface in etomica.virial"><span class="typeNameLink">ClusterWeight.Factory</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/Coefficient.html" title="interface in etomica.graph.model"><span class="typeNameLink">Coefficient</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/ColorSchemeCollective.html" title="interface in etomica.graphics"><span class="typeNameLink">ColorSchemeCollective</span></a></li>
<li class="circle">java.lang.Comparable&lt;T&gt;
<ul>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/Bitmap.html" title="interface in etomica.graph.model"><span class="typeNameLink">Bitmap</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/Edge.html" title="interface in etomica.graph.model"><span class="typeNameLink">Edge</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/Graph.html" title="interface in etomica.graph.model"><span class="typeNameLink">Graph</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/Metadata.html" title="interface in etomica.graph.model"><span class="typeNameLink">Metadata</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/Node.html" title="interface in etomica.graph.model"><span class="typeNameLink">Node</span></a></li>
</ul>
</li>
<li class="circle">etomica.config.<a href="etomica/config/Configuration.html" title="interface in etomica.config"><span class="typeNameLink">Configuration</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.ConfigurationStorageListener.html" title="interface in etomica.modules.glass"><span class="typeNameLink">ConfigurationStorage.ConfigurationStorageListener</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Console.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Console</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/ConsoleContainer.html" title="interface in etomica.graph.engine"><span class="typeNameLink">ConsoleContainer</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/ConsoleReader.html" title="interface in etomica.graph.engine"><span class="typeNameLink">ConsoleReader</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/CoordinateDefinitionHSDimer.IntegerFunction.html" title="interface in etomica.normalmode"><span class="typeNameLink">CoordinateDefinitionHSDimer.IntegerFunction</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/CoordinatePairSet.html" title="interface in etomica.virial"><span class="typeNameLink">CoordinatePairSet</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataDistributer.Indexer.html" title="interface in etomica.data"><span class="typeNameLink">DataDistributer.Indexer</span></a></li>
<li class="circle">etomica.overlap.<a href="etomica/overlap/DataOverlap.DataSourceOverlapAvg.html" title="interface in etomica.overlap"><span class="typeNameLink">DataOverlap.DataSourceOverlapAvg</span></a>
<ul>
<li class="circle">etomica.overlap.<a href="etomica/overlap/DataOverlap.DataSourceOverlapLogAvg.html" title="interface in etomica.overlap"><span class="typeNameLink">DataOverlap.DataSourceOverlapLogAvg</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/DataSetListener.html" title="interface in etomica.data"><span class="typeNameLink">DataSetListener</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataTableListener.html" title="interface in etomica.data"><span class="typeNameLink">DataTableListener</span></a></li>
</ul>
</li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSinkBlockAveragerSFac.Sink.html" title="interface in etomica.modules.glass"><span class="typeNameLink">DataSinkBlockAveragerSFac.Sink</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceAtomic.html" title="interface in etomica.data"><span class="typeNameLink">DataSourceAtomic</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceIndependent.html" title="interface in etomica.data"><span class="typeNameLink">DataSourceIndependent</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceMolecular.html" title="interface in etomica.data"><span class="typeNameLink">DataSourceMolecular</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DataSourceMSD.MSDSink.html" title="interface in etomica.modules.glass"><span class="typeNameLink">DataSourceMSD.MSDSink</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourcePositioned.html" title="interface in etomica.data"><span class="typeNameLink">DataSourcePositioned</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSplitter.IDataSinkFactory.html" title="interface in etomica.data"><span class="typeNameLink">DataSplitter.IDataSinkFactory</span></a></li>
<li class="circle">etomica.virial.cluster.<a href="etomica/virial/cluster/DiagramSource.html" title="interface in etomica.virial.cluster"><span class="typeNameLink">DiagramSource</span></a></li>
<li class="circle">etomica.atom.<a href="etomica/atom/DiameterHash.html" title="interface in etomica.atom"><span class="typeNameLink">DiameterHash</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/DipoleSource.html" title="interface in etomica.molecule"><span class="typeNameLink">DipoleSource</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/DisplayBoxCanvasGlass.html" title="interface in etomica.modules.glass"><span class="typeNameLink">DisplayBoxCanvasGlass</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/Drawable.html" title="interface in etomica.graphics"><span class="typeNameLink">Drawable</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/EdgeVisitor.html" title="interface in etomica.graph.model"><span class="typeNameLink">EdgeVisitor</span></a></li>
<li class="circle">etomica.chem.electrostatics.<a href="etomica/chem/electrostatics/Electrostatic.html" title="interface in etomica.chem.electrostatics"><span class="typeNameLink">Electrostatic</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Environment.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Environment</span></a></li>
<li class="circle">java.util.EventListener
<ul>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceBoxValueChangedListener.html" title="interface in etomica.graphics"><span class="typeNameLink">DeviceBoxValueChangedListener</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/FunctionData.html" title="interface in etomica.data"><span class="typeNameLink">FunctionData</span></a>&lt;T&gt;</li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/FunctionMultiDimensional.html" title="interface in etomica.math.function"><span class="typeNameLink">FunctionMultiDimensional</span></a>
<ul>
<li class="circle">etomica.math.function.<a href="etomica/math/function/FunctionMultiDimensionalDifferentiable.html" title="interface in etomica.math.function"><span class="typeNameLink">FunctionMultiDimensionalDifferentiable</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/GraphOp.html" title="interface in etomica.graph.operations"><span class="typeNameLink">GraphOp</span></a></li>
<li class="circle">etomica.data.histogram.<a href="etomica/data/histogram/Histogram.html" title="interface in etomica.data.histogram"><span class="typeNameLink">Histogram</span></a></li>
<li class="circle">etomica.data.history.<a href="etomica/data/history/History.html" title="interface in etomica.data.history"><span class="typeNameLink">History</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/IAction.html" title="interface in etomica.action"><span class="typeNameLink">IAction</span></a>
<ul>
<li class="circle">etomica.action.<a href="etomica/action/ActionGroup.html" title="interface in etomica.action"><span class="typeNameLink">ActionGroup</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/BoxAction.html" title="interface in etomica.action"><span class="typeNameLink">BoxAction</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/IntegratorAction.html" title="interface in etomica.action"><span class="typeNameLink">IntegratorAction</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/Undoable.html" title="interface in etomica.action"><span class="typeNameLink">Undoable</span></a></li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/IAPIPotential.html" title="interface in etomica.normalmode"><span class="typeNameLink">IAPIPotential</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/IAssociationHelper.html" title="interface in etomica.association"><span class="typeNameLink">IAssociationHelper</span></a></li>
<li class="circle">etomica.association.<a href="etomica/association/IAssociationHelperMolecule.html" title="interface in etomica.association"><span class="typeNameLink">IAssociationHelperMolecule</span></a></li>
<li class="circle">etomica.atom.<a href="etomica/atom/IAtom.html" title="interface in etomica.atom"><span class="typeNameLink">IAtom</span></a>
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/IAtomKinetic.html" title="interface in etomica.atom"><span class="typeNameLink">IAtomKinetic</span></a>
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/IAtomOrientedKinetic.html" title="interface in etomica.atom"><span class="typeNameLink">IAtomOrientedKinetic</span></a> (also extends etomica.atom.<a href="etomica/atom/IAtomOriented.html" title="interface in etomica.atom">IAtomOriented</a>)</li>
</ul>
</li>
<li class="circle">etomica.atom.<a href="etomica/atom/IAtomOriented.html" title="interface in etomica.atom"><span class="typeNameLink">IAtomOriented</span></a>
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/IAtomOrientedKinetic.html" title="interface in etomica.atom"><span class="typeNameLink">IAtomOrientedKinetic</span></a> (also extends etomica.atom.<a href="etomica/atom/IAtomKinetic.html" title="interface in etomica.atom">IAtomKinetic</a>)</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.veos.<a href="etomica/veos/IBigValue.html" title="interface in etomica.veos"><span class="typeNameLink">IBigValue</span></a></li>
<li class="circle">etomica.virial.GUI.components.<a href="etomica/virial/GUI/components/ICollectionPotential.html" title="interface in etomica.virial.GUI.components"><span class="typeNameLink">ICollectionPotential</span></a></li>
<li class="circle">etomica.config.<a href="etomica/config/IConformation.html" title="interface in etomica.config"><span class="typeNameLink">IConformation</span></a>
<ul>
<li class="circle">etomica.config.<a href="etomica/config/IConformationOriented.html" title="interface in etomica.config"><span class="typeNameLink">IConformationOriented</span></a></li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/IData.html" title="interface in etomica.data"><span class="typeNameLink">IData</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/IDataInfo.html" title="interface in etomica.data"><span class="typeNameLink">IDataInfo</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/IDataInfoFactory.html" title="interface in etomica.data"><span class="typeNameLink">IDataInfoFactory</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/IDataSink.html" title="interface in etomica.data"><span class="typeNameLink">IDataSink</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataLogger.DataWriter.html" title="interface in etomica.data"><span class="typeNameLink">DataLogger.DataWriter</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataPipe.html" title="interface in etomica.data"><span class="typeNameLink">DataPipe</span></a>
<ul>
<li class="circle">etomica.data.<a href="etomica/data/DataPipeForked.html" title="interface in etomica.data"><span class="typeNameLink">DataPipeForked</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.data.<a href="etomica/data/IDataSource.html" title="interface in etomica.data"><span class="typeNameLink">IDataSource</span></a>
<ul>
<li class="circle">etomica.virial.<a href="etomica/virial/ClusterWeightSumWall.DataSourceClusterWall.html" title="interface in etomica.virial"><span class="typeNameLink">ClusterWeightSumWall.DataSourceClusterWall</span></a></li>
</ul>
</li>
<li class="circle">etomica.chem.elements.<a href="etomica/chem/elements/IElement.html" title="interface in etomica.chem.elements"><span class="typeNameLink">IElement</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/IEvent.html" title="interface in etomica.util"><span class="typeNameLink">IEvent</span></a></li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/IFunction.html" title="interface in etomica.math.function"><span class="typeNameLink">IFunction</span></a>
<ul>
<li class="circle">etomica.math.function.<a href="etomica/math/function/Function.html" title="interface in etomica.math.function"><span class="typeNameLink">Function</span></a>
<ul>
<li class="circle">etomica.math.function.<a href="etomica/math/function/FunctionDifferentiable.html" title="interface in etomica.math.function"><span class="typeNameLink">FunctionDifferentiable</span></a></li>
<li class="circle">etomica.math.function.<a href="etomica/math/function/FunctionInvertible.html" title="interface in etomica.math.function"><span class="typeNameLink">FunctionInvertible</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.util.<a href="etomica/util/IListener.html" title="interface in etomica.util"><span class="typeNameLink">IListener</span></a>&lt;E&gt;</li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/IMolecularModel_SpeciesFactory.html" title="interface in etomica.virial.GUI.models"><span class="typeNameLink">IMolecularModel_SpeciesFactory</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/IMolecule.html" title="interface in etomica.molecule"><span class="typeNameLink">IMolecule</span></a>
<ul>
<li class="circle">etomica.molecule.<a href="etomica/molecule/IMoleculeKinetic.html" title="interface in etomica.molecule"><span class="typeNameLink">IMoleculeKinetic</span></a>
<ul>
<li class="circle">etomica.molecule.<a href="etomica/molecule/IMoleculeOrientedKinetic.html" title="interface in etomica.molecule"><span class="typeNameLink">IMoleculeOrientedKinetic</span></a> (also extends etomica.molecule.<a href="etomica/molecule/IMoleculeOriented.html" title="interface in etomica.molecule">IMoleculeOriented</a>)</li>
</ul>
</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/IMoleculePositioned.html" title="interface in etomica.molecule"><span class="typeNameLink">IMoleculePositioned</span></a>
<ul>
<li class="circle">etomica.molecule.<a href="etomica/molecule/IMoleculeOriented.html" title="interface in etomica.molecule"><span class="typeNameLink">IMoleculeOriented</span></a>
<ul>
<li class="circle">etomica.molecule.<a href="etomica/molecule/IMoleculeOrientedKinetic.html" title="interface in etomica.molecule"><span class="typeNameLink">IMoleculeOrientedKinetic</span></a> (also extends etomica.molecule.<a href="etomica/molecule/IMoleculeKinetic.html" title="interface in etomica.molecule">IMoleculeKinetic</a>)</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/IMoleculePositionDefinition.html" title="interface in etomica.molecule"><span class="typeNameLink">IMoleculePositionDefinition</span></a></li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/IndexIterator.html" title="interface in etomica.lattice"><span class="typeNameLink">IndexIterator</span></a>
<ul>
<li class="circle">etomica.lattice.<a href="etomica/lattice/IndexIteratorSizable.html" title="interface in etomica.lattice"><span class="typeNameLink">IndexIteratorSizable</span></a></li>
</ul>
</li>
<li class="circle">g3dsys.control.<a href="g3dsys/control/IndexIterator.html" title="interface in g3dsys.control"><span class="typeNameLink">IndexIterator</span></a></li>
<li class="circle">etomica.nbr.list.<a href="etomica/nbr/list/INeighborListListener.html" title="interface in etomica.nbr.list"><span class="typeNameLink">INeighborListListener</span></a></li>
<li class="circle">etomica.nbr.list.molecule.<a href="etomica/nbr/list/molecule/INeighborListListenerMolecular.html" title="interface in etomica.nbr.list.molecule"><span class="typeNameLink">INeighborListListenerMolecular</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/Integrator.Forcible.html" title="interface in etomica.integrator"><span class="typeNameLink">Integrator.Forcible</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/Integrator.Torquable.html" title="interface in etomica.integrator"><span class="typeNameLink">Integrator.Torquable</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorHard.CollisionListener.html" title="interface in etomica.integrator"><span class="typeNameLink">IntegratorHard.CollisionListener</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorListener.html" title="interface in etomica.integrator"><span class="typeNameLink">IntegratorListener</span></a>
<ul>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorListenerMD.html" title="interface in etomica.integrator"><span class="typeNameLink">IntegratorListenerMD</span></a></li>
</ul>
</li>
<li class="circle">etomica.overlap.<a href="etomica/overlap/IntegratorOverlap.ReferenceFracSource.html" title="interface in etomica.overlap"><span class="typeNameLink">IntegratorOverlap.ReferenceFracSource</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorPT.MCMoveSwap.html" title="interface in etomica.integrator"><span class="typeNameLink">IntegratorPT.MCMoveSwap</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorPT.MCMoveSwapFactory.html" title="interface in etomica.integrator"><span class="typeNameLink">IntegratorPT.MCMoveSwapFactory</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/IntSet.PropertyBin.html" title="interface in etomica.virial"><span class="typeNameLink">IntSet.PropertyBin</span></a></li>
<li class="circle">etomica.space.<a href="etomica/space/IOrientation.html" title="interface in etomica.space"><span class="typeNameLink">IOrientation</span></a>
<ul>
<li class="circle">etomica.space2d.<a href="etomica/space2d/IOrientation2D.html" title="interface in etomica.space2d"><span class="typeNameLink">IOrientation2D</span></a></li>
<li class="circle">etomica.space3d.<a href="etomica/space3d/IOrientation3D.html" title="interface in etomica.space3d"><span class="typeNameLink">IOrientation3D</span></a>
<ul>
<li class="circle">etomica.space3d.<a href="etomica/space3d/IOrientationFull3D.html" title="interface in etomica.space3d"><span class="typeNameLink">IOrientationFull3D</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotential.html" title="interface in etomica.potential"><span class="typeNameLink">IPotential</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotential0Lrc.html" title="interface in etomica.potential"><span class="typeNameLink">IPotential0Lrc</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotentialAtomic.html" title="interface in etomica.potential"><span class="typeNameLink">IPotentialAtomic</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotentialAtomicMultibody.html" title="interface in etomica.potential"><span class="typeNameLink">IPotentialAtomicMultibody</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential"><span class="typeNameLink">Potential2Spherical</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential"><span class="typeNameLink">Potential2Soft</span></a> (also extends etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential">PotentialSoft</a>)</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialHard.html" title="interface in etomica.potential"><span class="typeNameLink">PotentialHard</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialSoft.html" title="interface in etomica.potential"><span class="typeNameLink">PotentialSoft</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotentialTorque.html" title="interface in etomica.potential"><span class="typeNameLink">IPotentialTorque</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotentialAtomicSecondDerivative.html" title="interface in etomica.potential"><span class="typeNameLink">IPotentialAtomicSecondDerivative</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential2Soft.html" title="interface in etomica.potential"><span class="typeNameLink">Potential2Soft</span></a> (also extends etomica.potential.<a href="etomica/potential/Potential2Spherical.html" title="interface in etomica.potential">Potential2Spherical</a>)</li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialTruncated.html" title="interface in etomica.potential"><span class="typeNameLink">PotentialTruncated</span></a></li>
</ul>
</li>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotentialMolecular.html" title="interface in etomica.potential"><span class="typeNameLink">IPotentialMolecular</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotential0MoleculeLrc.html" title="interface in etomica.potential"><span class="typeNameLink">IPotential0MoleculeLrc</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialMolecularSoft.html" title="interface in etomica.potential"><span class="typeNameLink">PotentialMolecularSoft</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotentialMolecularTorque.html" title="interface in etomica.potential"><span class="typeNameLink">IPotentialMolecularTorque</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/IPotentialMolecularSecondDerivative.html" title="interface in etomica.potential"><span class="typeNameLink">IPotentialMolecularSecondDerivative</span></a></li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.modules.rosmosis.<a href="etomica/modules/rosmosis/IPotentialCalculationWallForce.html" title="interface in etomica.modules.rosmosis"><span class="typeNameLink">IPotentialCalculationWallForce</span></a></li>
<li class="circle">etomica.util.random.<a href="etomica/util/random/IRandom.html" title="interface in etomica.util.random"><span class="typeNameLink">IRandom</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/ISpecies.html" title="interface in etomica.species"><span class="typeNameLink">ISpecies</span></a></li>
<li class="circle">java.lang.Iterable&lt;T&gt;
<ul>
<li class="circle">java.util.Collection&lt;E&gt;
<ul>
<li class="circle">java.util.List&lt;E&gt;
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/IAtomList.html" title="interface in etomica.atom"><span class="typeNameLink">IAtomList</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/IMoleculeList.html" title="interface in etomica.molecule"><span class="typeNameLink">IMoleculeList</span></a></li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li class="circle">java.util.Iterator&lt;E&gt;
<ul>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/GraphIterator.html" title="interface in etomica.graph.model"><span class="typeNameLink">GraphIterator</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/Permutator.html" title="interface in etomica.graph.model"><span class="typeNameLink">Permutator</span></a></li>
</ul>
</li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/LatticeSumMolecularCrystal.AtomicTensorAtomicPair.html" title="interface in etomica.normalmode"><span class="typeNameLink">LatticeSumMolecularCrystal.AtomicTensorAtomicPair</span></a></li>
<li class="circle">org.jmol.util.<a href="org/jmol/util/LoggerInterface.html" title="interface in org.jmol.util"><span class="typeNameLink">LoggerInterface</span></a></li>
<li class="circle">etomica.tmmc.<a href="etomica/tmmc/MacrostateManager.html" title="interface in etomica.tmmc"><span class="typeNameLink">MacrostateManager</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/Main.OptionHandler.html" title="interface in etomica.graph.view.rasterizer"><span class="typeNameLink">Main.OptionHandler</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunction.html" title="interface in etomica.virial"><span class="typeNameLink">MayerFunction</span></a></li>
<li class="circle">etomica.virial.<a href="etomica/virial/MayerFunctionNonAdditive.html" title="interface in etomica.virial"><span class="typeNameLink">MayerFunctionNonAdditive</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveMolecular.html" title="interface in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveMolecular</span></a></li>
<li class="circle">etomica.integrator.mcmove.<a href="etomica/integrator/mcmove/MCMoveStepDependent.html" title="interface in etomica.integrator.mcmove"><span class="typeNameLink">MCMoveStepDependent</span></a></li>
<li class="circle">etomica.data.meter.<a href="etomica/data/meter/MeterStructureFactor.AtomSignalSource.html" title="interface in etomica.data.meter"><span class="typeNameLink">MeterStructureFactor.AtomSignalSource</span></a></li>
<li class="circle">etomica.modifier.<a href="etomica/modifier/Modifier.html" title="interface in etomica.modifier"><span class="typeNameLink">Modifier</span></a></li>
<li class="circle">etomica.modifier.<a href="etomica/modifier/ModifierBoolean.html" title="interface in etomica.modifier"><span class="typeNameLink">ModifierBoolean</span></a></li>
<li class="circle">etomica.action.<a href="etomica/action/MoleculeAction.html" title="interface in etomica.action"><span class="typeNameLink">MoleculeAction</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeAgentManager.MoleculeAgentSource.html" title="interface in etomica.molecule"><span class="typeNameLink">MoleculeAgentManager.MoleculeAgentSource</span></a>&lt;E&gt;</li>
<li class="circle">etomica.nbr.cell.molecule.<a href="etomica/nbr/cell/molecule/MoleculesetIteratorCellular.html" title="interface in etomica.nbr.cell.molecule"><span class="typeNameLink">MoleculesetIteratorCellular</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeSource.html" title="interface in etomica.molecule"><span class="typeNameLink">MoleculeSource</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeToIndex.html" title="interface in etomica.molecule"><span class="typeNameLink">MoleculeToIndex</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/MoleculeToMoleculeList.html" title="interface in etomica.molecule"><span class="typeNameLink">MoleculeToMoleculeList</span></a></li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/NeighborCriterion.html" title="interface in etomica.nbr"><span class="typeNameLink">NeighborCriterion</span></a></li>
<li class="circle">etomica.nbr.molecule.<a href="etomica/nbr/molecule/NeighborCriterionMolecular.html" title="interface in etomica.nbr.molecule"><span class="typeNameLink">NeighborCriterionMolecular</span></a></li>
<li class="circle">etomica.nbr.<a href="etomica/nbr/NeighborIterator.html" title="interface in etomica.nbr"><span class="typeNameLink">NeighborIterator</span></a></li>
<li class="circle">etomica.graph.model.<a href="etomica/graph/model/NodeVisitor.html" title="interface in etomica.graph.model"><span class="typeNameLink">NodeVisitor</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/NormalModes.html" title="interface in etomica.normalmode"><span class="typeNameLink">NormalModes</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/OrientationCalc.html" title="interface in etomica.molecule"><span class="typeNameLink">OrientationCalc</span></a></li>
<li class="circle">etomica.molecule.<a href="etomica/molecule/OrientationCalcQuaternion.html" title="interface in etomica.molecule"><span class="typeNameLink">OrientationCalcQuaternion</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P1IntraMolecular.html" title="interface in etomica.potential"><span class="typeNameLink">P1IntraMolecular</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SemiclassicalAtomic.AtomInfo.html" title="interface in etomica.potential"><span class="typeNameLink">P2SemiclassicalAtomic.AtomInfo</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/P2SemiclassicalMolecular.MoleculeInfo.html" title="interface in etomica.potential"><span class="typeNameLink">P2SemiclassicalMolecular.MoleculeInfo</span></a></li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2Water4PSoft.AtomicTensorAtomicPair.html" title="interface in etomica.models.water"><span class="typeNameLink">P2Water4PSoft.AtomicTensorAtomicPair</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Parallelotope.html" title="interface in etomica.math.geometry"><span class="typeNameLink">Parallelotope</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/ParameterParser.html" title="interface in etomica.util"><span class="typeNameLink">ParameterParser</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Parameters.html" title="interface in etomica.graph.operations"><span class="typeNameLink">Parameters</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.Expression.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.Expression</span></a>
<ul>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.StrictExpression.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.StrictExpression</span></a>
<ul>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.BinaryOp.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.BinaryOp</span></a>
<ul>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.BinaryOpByte.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.BinaryOpByte</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.Constructor.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.Constructor</span></a>
<ul>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.ConstructorColored.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.ConstructorColored</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.ConstructorMono.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.ConstructorMono</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOp.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.UnaryOp</span></a>
<ul>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpByte.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.UnaryOpByte</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpByteMap.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.UnaryOpByteMap</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpColor.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.UnaryOpColor</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpThreeColor.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.UnaryOpThreeColor</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.UnaryOpTwoByte.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.UnaryOpTwoByte</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.Variable.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.Variable</span></a></li>
</ul>
</li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.Property.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.Property</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.Statement.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.Statement</span></a>
<ul>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.Assignment.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.Assignment</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.Command.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.Command</span></a>
<ul>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.CommandPropertyValue.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.CommandPropertyValue</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.CommandValue.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.CommandValue</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.CommandVariable.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.CommandVariable</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.CommandVariableValue.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.CommandVariableValue</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Parser.Value.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Parser.Value</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/Potential1.Intramolecular.html" title="interface in etomica.potential"><span class="typeNameLink">Potential1.Intramolecular</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculation.html" title="interface in etomica.potential"><span class="typeNameLink">PotentialCalculation</span></a>
<ul>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialCalculationMolecular.html" title="interface in etomica.potential"><span class="typeNameLink">PotentialCalculationMolecular</span></a></li>
</ul>
</li>
<li class="circle">etomica.mappedvirial.<a href="etomica/mappedvirial/PotentialCalculationMappedVirialV.VFunc.html" title="interface in etomica.mappedvirial"><span class="typeNameLink">PotentialCalculationMappedVirialV.VFunc</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialPolarizable.html" title="interface in etomica.potential"><span class="typeNameLink">PotentialPolarizable</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/PotentialReactive.html" title="interface in etomica.potential"><span class="typeNameLink">PotentialReactive</span></a></li>
<li class="circle">java.util.function.Predicate&lt;T&gt;
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomTest.html" title="interface in etomica.atom"><span class="typeNameLink">AtomTest</span></a>
<ul>
<li class="circle">etomica.atom.<a href="etomica/atom/AtomTestCollective.html" title="interface in etomica.atom"><span class="typeNameLink">AtomTestCollective</span></a></li>
</ul>
</li>
</ul>
</li>
<li class="circle">etomica.graph.property.<a href="etomica/graph/property/Property.html" title="interface in etomica.graph.property"><span class="typeNameLink">Property</span></a></li>
<li class="circle">etomica.meta.properties.<a href="etomica/meta/properties/Property.html" title="interface in etomica.meta.properties"><span class="typeNameLink">Property</span></a></li>
<li class="circle">etomica.box.<a href="etomica/box/RandomPositionSource.html" title="interface in etomica.box"><span class="typeNameLink">RandomPositionSource</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Rectangular.html" title="interface in etomica.math.geometry"><span class="typeNameLink">Rectangular</span></a></li>
<li class="circle">etomica.graph.isomorphism.<a href="etomica/graph/isomorphism/SearchState.html" title="interface in etomica.graph.isomorphism"><span class="typeNameLink">SearchState</span></a></li>
<li class="circle">etomica.math.geometry.<a href="etomica/math/geometry/Shape.html" title="interface in etomica.math.geometry"><span class="typeNameLink">Shape</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/SimulationContainer.html" title="interface in etomica.simulation"><span class="typeNameLink">SimulationContainer</span></a></li>
<li class="circle">etomica.simulation.<a href="etomica/simulation/SimulationListener.html" title="interface in etomica.simulation"><span class="typeNameLink">SimulationListener</span></a></li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/SiteFactory.html" title="interface in etomica.lattice"><span class="typeNameLink">SiteFactory</span></a></li>
<li class="circle">etomica.lattice.<a href="etomica/lattice/SiteIterator.html" title="interface in etomica.lattice"><span class="typeNameLink">SiteIterator</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesAgentManager.AgentSource.html" title="interface in etomica.species"><span class="typeNameLink">SpeciesAgentManager.AgentSource</span></a>&lt;E&gt;</li>
<li class="circle">etomica.virial.<a href="etomica/virial/SpeciesFactory.html" title="interface in etomica.virial"><span class="typeNameLink">SpeciesFactory</span></a></li>
<li class="circle">etomica.species.<a href="etomica/species/SpeciesGeneral.AtomFactory.html" title="interface in etomica.species"><span class="typeNameLink">SpeciesGeneral.AtomFactory</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterController.html" title="interface in etomica.graph.view.rasterizer"><span class="typeNameLink">SVGConverterController</span></a></li>
<li class="circle">etomica.graph.view.rasterizer.<a href="etomica/graph/view/rasterizer/SVGConverterSource.html" title="interface in etomica.graph.view.rasterizer"><span class="typeNameLink">SVGConverterSource</span></a></li>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/Traversal.html" title="interface in etomica.graph.traversal"><span class="typeNameLink">Traversal</span></a></li>
<li class="circle">etomica.graph.traversal.<a href="etomica/graph/traversal/TraversalVisitor.html" title="interface in etomica.graph.traversal"><span class="typeNameLink">TraversalVisitor</span></a></li>
<li class="circle">etomica.graph.operations.<a href="etomica/graph/operations/Unary.html" title="interface in etomica.graph.operations"><span class="typeNameLink">Unary</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Unit.html" title="interface in etomica.units"><span class="typeNameLink">Unit</span></a></li>
<li class="circle">etomica.space.<a href="etomica/space/Vector.html" title="interface in etomica.space"><span class="typeNameLink">Vector</span></a></li>
<li class="circle">etomica.graph.engine.<a href="etomica/graph/engine/Viewer.html" title="interface in etomica.graph.engine"><span class="typeNameLink">Viewer</span></a></li>
<li class="circle">etomica.normalmode.<a href="etomica/normalmode/WaveVectorFactory.html" title="interface in etomica.normalmode"><span class="typeNameLink">WaveVectorFactory</span></a></li>
</ul>
<h2 title="Annotation Type Hierarchy">Annotation Type Hierarchy</h2>
<ul>
<li class="circle">etomica.units.dimensions.<a href="etomica/units/dimensions/Dimensioned.html" title="annotation in etomica.units.dimensions"><span class="typeNameLink">Dimensioned</span></a> (implements java.lang.annotation.Annotation)</li>
<li class="circle">etomica.meta.annotations.<a href="etomica/meta/annotations/IgnoreProperty.html" title="annotation in etomica.meta.annotations"><span class="typeNameLink">IgnoreProperty</span></a> (implements java.lang.annotation.Annotation)</li>
<li class="circle">etomica.meta.javadoc.<a href="etomica/meta/javadoc/KeepSimJavadoc.html" title="annotation in etomica.meta.javadoc"><span class="typeNameLink">KeepSimJavadoc</span></a> (implements java.lang.annotation.Annotation)</li>
</ul>
<h2 title="Enum Hierarchy">Enum Hierarchy</h2>
<ul>
<li class="circle">java.lang.Object
<ul>
<li class="circle">java.lang.Enum&lt;E&gt; (implements java.lang.Comparable&lt;T&gt;, java.io.Serializable)
<ul>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/ConfigurationStorage.StorageType.html" title="enum in etomica.modules.glass"><span class="typeNameLink">ConfigurationStorage.StorageType</span></a></li>
<li class="circle">etomica.util.<a href="etomica/util/Constants.CompassDirection.html" title="enum in etomica.util"><span class="typeNameLink">Constants.CompassDirection</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/CorrelationSelf2.CorrelationType.html" title="enum in etomica.modules.glass"><span class="typeNameLink">CorrelationSelf2.CorrelationType</span></a></li>
<li class="circle">etomica.data.<a href="etomica/data/DataSourceUniform.LimitType.html" title="enum in etomica.data"><span class="typeNameLink">DataSourceUniform.LimitType</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DeviceBox.LabelType.html" title="enum in etomica.graphics"><span class="typeNameLink">DeviceBox.LabelType</span></a></li>
<li class="circle">etomica.graphics.<a href="etomica/graphics/DisplayTextBox.LabelType.html" title="enum in etomica.graphics"><span class="typeNameLink">DisplayTextBox.LabelType</span></a></li>
<li class="circle">org.jmol.constant.<a href="org/jmol/constant/EnumPalette.html" title="enum in org.jmol.constant"><span class="typeNameLink">EnumPalette</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/EnumPotentialParamDescription.html" title="enum in etomica.virial.GUI.models"><span class="typeNameLink">EnumPotentialParamDescription</span></a></li>
<li class="circle">etomica.virial.GUI.models.<a href="etomica/virial/GUI/models/EnumSiteName.html" title="enum in etomica.virial.GUI.models"><span class="typeNameLink">EnumSiteName</span></a></li>
<li class="circle">org.jmol.constant.<a href="org/jmol/constant/EnumStereoMode.html" title="enum in org.jmol.constant"><span class="typeNameLink">EnumStereoMode</span></a></li>
<li class="circle">org.jmol.constant.<a href="org/jmol/constant/EnumVdw.html" title="enum in org.jmol.constant"><span class="typeNameLink">EnumVdw</span></a></li>
<li class="circle">etomica.integrator.<a href="etomica/integrator/IntegratorMD.ThermostatType.html" title="enum in etomica.integrator"><span class="typeNameLink">IntegratorMD.ThermostatType</span></a></li>
<li class="circle">etomica.potential.<a href="etomica/potential/IteratorDirective.Direction.html" title="enum in etomica.potential"><span class="typeNameLink">IteratorDirective.Direction</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/MeterCorrelation.CorrelationType.html" title="enum in etomica.modules.glass"><span class="typeNameLink">MeterCorrelation.CorrelationType</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/MeterCorrelationSelf.CorrelationType.html" title="enum in etomica.modules.glass"><span class="typeNameLink">MeterCorrelationSelf.CorrelationType</span></a></li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/P2CO2Hellmann.Parameters.html" title="enum in etomica.models.co2"><span class="typeNameLink">P2CO2Hellmann.Parameters</span></a></li>
<li class="circle">etomica.cavity.<a href="etomica/cavity/P2HardSphereCavity.CollisionType.html" title="enum in etomica.cavity"><span class="typeNameLink">P2HardSphereCavity.CollisionType</span></a></li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/P2WaterSzalewicz.Component.html" title="enum in etomica.models.water"><span class="typeNameLink">P2WaterSzalewicz.Component</span></a></li>
<li class="circle">etomica.parser.<a href="etomica/parser/ParserLAMMPS.Truncation.html" title="enum in etomica.parser"><span class="typeNameLink">ParserLAMMPS.Truncation</span></a></li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNCO2GCPM.Component.html" title="enum in etomica.models.co2"><span class="typeNameLink">PNCO2GCPM.Component</span></a></li>
<li class="circle">etomica.models.co2.<a href="etomica/models/co2/PNGCPM.Component.html" title="enum in etomica.models.co2"><span class="typeNameLink">PNGCPM.Component</span></a></li>
<li class="circle">etomica.models.water.<a href="etomica/models/water/PNWaterGCPM.Component.html" title="enum in etomica.models.water"><span class="typeNameLink">PNWaterGCPM.Component</span></a></li>
<li class="circle">etomica.units.<a href="etomica/units/Prefix.html" title="enum in etomica.units"><span class="typeNameLink">Prefix</span></a></li>
<li class="circle">etomica.modules.glass.<a href="etomica/modules/glass/SimGlass.PotentialChoice.html" title="enum in etomica.modules.glass"><span class="typeNameLink">SimGlass.PotentialChoice</span></a></li>
<li class="circle">etomica.server.representations.<a href="etomica/server/representations/StatusAction.Status.html" title="enum in etomica.server.representations"><span class="typeNameLink">StatusAction.Status</span></a></li>
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