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<table class="overviewSummary" summary="Packages table, listing packages, and an explanation">
<caption><span>Packages</span><span class="tabEnd">&nbsp;</span></caption>
<tr>
<th class="colFirst" scope="col">Package</th>
<th class="colLast" scope="col">Description</th>
</tr>
<tbody>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/package-summary.html">etomica</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/action/package-summary.html">etomica.action</a></th>
<td class="colLast">
<div class="block">Define elementary actions that can be performed on simulation elements.</div>
</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/action/activity/package-summary.html">etomica.action.activity</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/action/controller/package-summary.html">etomica.action.controller</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/AlkaneEH/package-summary.html">etomica.AlkaneEH</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/association/package-summary.html">etomica.association</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/association/AceticAcid/package-summary.html">etomica.association.AceticAcid</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/association/GCPMWater/package-summary.html">etomica.association.GCPMWater</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/atom/package-summary.html">etomica.atom</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/atom/iterator/package-summary.html">etomica.atom.iterator</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/box/package-summary.html">etomica.box</a></th>
<td class="colLast">
<div class="block">Defines the Box class, which is a container of molecules, and provides means to track activities relating to it.</div>
</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/cavity/package-summary.html">etomica.cavity</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/chem/electrostatics/package-summary.html">etomica.chem.electrostatics</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/chem/elements/package-summary.html">etomica.chem.elements</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/compatibility/package-summary.html">etomica.compatibility</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/config/package-summary.html">etomica.config</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/data/package-summary.html">etomica.data</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/data/histogram/package-summary.html">etomica.data.histogram</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/data/history/package-summary.html">etomica.data.history</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/data/meter/package-summary.html">etomica.data.meter</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/data/types/package-summary.html">etomica.data.types</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/dcvgcmd/package-summary.html">etomica.dcvgcmd</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/dielectric/package-summary.html">etomica.dielectric</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/dimer/package-summary.html">etomica.dimer</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/eam/package-summary.html">etomica.eam</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/eigenstuff/package-summary.html">etomica.eigenstuff</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/exception/package-summary.html">etomica.exception</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/freeenergy/npath/package-summary.html">etomica.freeenergy.npath</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/graph/engine/package-summary.html">etomica.graph.engine</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/graph/engine/impl/package-summary.html">etomica.graph.engine.impl</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/graph/isomorphism/package-summary.html">etomica.graph.isomorphism</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/graph/iterators/package-summary.html">etomica.graph.iterators</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/graph/iterators/filters/package-summary.html">etomica.graph.iterators.filters</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/graph/model/package-summary.html">etomica.graph.model</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/graph/model/comparators/package-summary.html">etomica.graph.model.comparators</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/graph/model/impl/package-summary.html">etomica.graph.model.impl</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/graph/operations/package-summary.html">etomica.graph.operations</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/graph/property/package-summary.html">etomica.graph.property</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/graph/traversal/package-summary.html">etomica.graph.traversal</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/graph/util/package-summary.html">etomica.graph.util</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/graph/view/rasterizer/package-summary.html">etomica.graph.view.rasterizer</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/graph/viewer/package-summary.html">etomica.graph.viewer</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/graphics/package-summary.html">etomica.graphics</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/heVLE/package-summary.html">etomica.heVLE</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/integrator/package-summary.html">etomica.integrator</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/integrator/mcmove/package-summary.html">etomica.integrator.mcmove</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/interfacial/package-summary.html">etomica.interfacial</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/kmc/package-summary.html">etomica.kmc</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/lattice/package-summary.html">etomica.lattice</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/lattice/crystal/package-summary.html">etomica.lattice.crystal</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/liquidLJ/package-summary.html">etomica.liquidLJ</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/mappedRdf/package-summary.html">etomica.mappedRdf</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/mappedvirial/package-summary.html">etomica.mappedvirial</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/math/package-summary.html">etomica.math</a></th>
<td class="colLast">
<div class="block">Provides classes implementing some selected mathematical utilities.</div>
</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/math/discrete/package-summary.html">etomica.math.discrete</a></th>
<td class="colLast">
<div class="block">Defines classes that provide some discrete mathematics utilities, particularly the generation of
 permutations and combinations.</div>
</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/math/function/package-summary.html">etomica.math.function</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/math/geometry/package-summary.html">etomica.math.geometry</a></th>
<td class="colLast">
<div class="block">Provides classes that define points, planes, and geometric shapes.</div>
</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/math/geometry/coordinate/package-summary.html">etomica.math.geometry.coordinate</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/math/numerical/package-summary.html">etomica.math.numerical</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/meta/package-summary.html">etomica.meta</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/meta/annotations/package-summary.html">etomica.meta.annotations</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/meta/javadoc/package-summary.html">etomica.meta.javadoc</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/meta/properties/package-summary.html">etomica.meta.properties</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/meta/serializers/package-summary.html">etomica.meta.serializers</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/meta/wrappers/package-summary.html">etomica.meta.wrappers</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/metastable/package-summary.html">etomica.metastable</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/models/clathrates/package-summary.html">etomica.models.clathrates</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/models/co2/package-summary.html">etomica.models.co2</a></th>
<td class="colLast">
<div class="block">Library of molecular models of CO2.</div>
</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/models/nitrogen/package-summary.html">etomica.models.nitrogen</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/models/OPLS/package-summary.html">etomica.models.OPLS</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/models/rowley/package-summary.html">etomica.models.rowley</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/models/traPPE/package-summary.html">etomica.models.traPPE</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/models/water/package-summary.html">etomica.models.water</a></th>
<td class="colLast">
<div class="block">Library of molecular models of Water.</div>
</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modifier/package-summary.html">etomica.modifier</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/package-summary.html">etomica.modules</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/adsorption/package-summary.html">etomica.modules.adsorption</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/catalysis/package-summary.html">etomica.modules.catalysis</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/chainequilibrium/package-summary.html">etomica.modules.chainequilibrium</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/clustergenerator/package-summary.html">etomica.modules.clustergenerator</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/colloid/package-summary.html">etomica.modules.colloid</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/crystalviewer/package-summary.html">etomica.modules.crystalviewer</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/dcvgcmd/package-summary.html">etomica.modules.dcvgcmd</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/droplet/package-summary.html">etomica.modules.droplet</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/ensembles/package-summary.html">etomica.modules.ensembles</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/glass/package-summary.html">etomica.modules.glass</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/insertion/package-summary.html">etomica.modules.insertion</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/interfacial/package-summary.html">etomica.modules.interfacial</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/ljmd/package-summary.html">etomica.modules.ljmd</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/materialfracture/package-summary.html">etomica.modules.materialfracture</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/mu/package-summary.html">etomica.modules.mu</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/multiharmonic/package-summary.html">etomica.modules.multiharmonic</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/multiharmonic/mbar/package-summary.html">etomica.modules.multiharmonic.mbar</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/multiharmonic/overlap/package-summary.html">etomica.modules.multiharmonic.overlap</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="rowColor">
<th class="colFirst" scope="row"><a href="etomica/modules/multiharmonic/umbrella/package-summary.html">etomica.modules.multiharmonic.umbrella</a></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr class="altColor">
<th class="colFirst" scope="row"><a href="etomica/modules/nucleation/package-summary.html">etomica.modules.nucleation</a></th>
<td class="colLast">&nbsp;</td>
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<tr class="rowColor">
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<th class="colFirst" scope="row"><a href="etomica/molecule/iterator/package-summary.html">etomica.molecule.iterator</a></th>
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<th class="colFirst" scope="row"><a href="etomica/nbr/package-summary.html">etomica.nbr</a></th>
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<th class="colFirst" scope="row"><a href="etomica/nbr/list/molecule/package-summary.html">etomica.nbr.list.molecule</a></th>
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<th class="colFirst" scope="row"><a href="etomica/nbr/molecule/package-summary.html">etomica.nbr.molecule</a></th>
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<div class="block">Specifies abstract classes and interfaces that define the nature of the physical space in which
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<div class="block">1-dimensional space, generating vectors etc defined in terms of x coordinates only.</div>
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<div class="block">2-dimensional space, generating vectors etc defined in terms of x and y coordinates.</div>
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<div class="block">3-dimensional space, generating vectors etc defined in terms of x, y, and z coordinates.</div>
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<div class="block">Solid and liquid equations of state for hard spheres and Lennard-Jones model.</div>
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<div class="block">Defines units and dimensions that are used for conversions during input or output.</div>
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<div class="block">Classes used for a graphical interface for selecting units.</div>
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<div class="block">Provides classes that specify a system of units, such as SI, English, etc.</div>
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