convert_nb_to_scripts.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "import os\n",
    "import sys"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "def convert_nb_to_script(dir_):\n",
    "    ! jupyter nbconvert --to script $dir_/*.ipynb\n",
    "\n",
    "    #.txt means file was open/not saved so converted to .txt not .py\n",
    "    for fil in os.listdir(dir_):\n",
    "        assert '.txt' not in fil, \"Save all your notebooks first!\"\n",
    "    if dir_ is not \".\":\n",
    "        ! mv $dir_/__init__.py $dir_/__init__.pyc\n",
    "        ! mv $dir_/nbfinder.py $dir_/nbfinder.pyc        \n",
    "\n",
    "\n",
    "    ! sed -i.bak 's/# coding: utf-8/import matplotlib; matplotlib.use(\"agg\")/g' $dir_/*.py\n",
    "\n",
    "    #get rid of IN[] lines\n",
    "    !sed -i.bak '/# IN\\[*/d' $dir_/*.py\n",
    "\n",
    "    #get rid of ipython lines\n",
    "    !sed -i.bak '/ipython*/d' $dir_/*.py\n",
    "\n",
    "    !sed -i.bak '/NotebookFinder*/d' $dir_/*.py\n",
    "\n",
    "    ! sed -i.bak 's/notebooks./scripts./g' $dir_/*.py\n",
    "    #get rid of IN[] lines\n",
    "    !sed -i.bak '/# In\\[*/d' $dir_/*.py\n",
    "\n",
    "    !sed -i.bak '/# coding:*/d' $dir_/*.py\n",
    "\n",
    "    !sed -i.bak 's/plt.show()*/pass/g' $dir_/*.py\n",
    "\n",
    "    ! rm $dir_/*.bak\n",
    "    \n",
    "\n",
    "    if dir_ is not \".\":\n",
    "        subdir = \"/\".join(dir_.split(\"notebooks/\")[1:])\n",
    "        if not os.path.exists(os.path.join(\"./scripts\", subdir)):\n",
    "            os.makedirs(os.path.join(\"./scripts\", subdir))\n",
    "        #move to scripts\n",
    "        ! mv $dir_/*.py ./scripts/$subdir\n",
    "        \n",
    "        ! mv $dir_/__init__.pyc $dir_/__init__.py\n",
    "        ! mv $dir_/nbfinder.pyc $dir_/nbfinder.py\n",
    "        ! cp $dir_/nbfinder.py ./scripts/$subdir\n",
    "        ! cp $dir_/__init__.py ./scripts/$subdir\n",
    "    else:\n",
    "        ! rm $dir_/convert_nb_to_scripts.py\n",
    "        \n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[NbConvertApp] Converting notebook ./notebooks/printing//print_n_plot.ipynb to script\n",
      "[NbConvertApp] Writing 4415 bytes to ./notebooks/printing/print_n_plot.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/printing//print_utils.ipynb to script\n",
      "[NbConvertApp] Writing 1563 bytes to ./notebooks/printing/print_utils.py\n"
     ]
    }
   ],
   "source": [
    "convert_nb_to_script(\"./notebooks/printing/\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "./notebooks\n",
      "[NbConvertApp] Converting notebook ./notebooks/trainer.ipynb to script\n",
      "[NbConvertApp] Writing 2685 bytes to ./notebooks/trainer.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/trainer_caffe.ipynb to script\n",
      "[NbConvertApp] Writing 2696 bytes to ./notebooks/trainer_caffe.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/util.ipynb to script\n",
      "[NbConvertApp] Writing 3335 bytes to ./notebooks/util.py\n",
      "./notebooks/steve_stuff\n",
      "[NbConvertApp] Converting notebook ./notebooks/steve_stuff/BaselineSelectionTests.ipynb to script\n",
      "[NbConvertApp] Writing 6309 bytes to ./notebooks/steve_stuff/BaselineSelectionTests.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/steve_stuff/KerasModels.ipynb to script\n",
      "[NbConvertApp] Writing 7725 bytes to ./notebooks/steve_stuff/KerasModels.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/steve_stuff/PlotCaloClusters.ipynb to script\n",
      "[NbConvertApp] Writing 877 bytes to ./notebooks/steve_stuff/PlotCaloClusters.py\n",
      "mv: cannot stat './notebooks/steve_stuff/__init__.py': No such file or directory\n",
      "mv: cannot stat './notebooks/steve_stuff/nbfinder.py': No such file or directory\n",
      "mv: cannot stat './notebooks/steve_stuff/__init__.pyc': No such file or directory\n",
      "mv: cannot stat './notebooks/steve_stuff/nbfinder.pyc': No such file or directory\n",
      "cp: cannot stat './notebooks/steve_stuff/nbfinder.py': No such file or directory\n",
      "cp: cannot stat './notebooks/steve_stuff/__init__.py': No such file or directory\n",
      "./notebooks/load_data\n",
      "[NbConvertApp] Converting notebook ./notebooks/load_data/data_loader.ipynb to script\n",
      "[NbConvertApp] Writing 9639 bytes to ./notebooks/load_data/data_loader.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/load_data/data_loader_caffe.ipynb to script\n",
      "[NbConvertApp] Writing 7079 bytes to ./notebooks/load_data/data_loader_caffe.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/load_data/data_writer_merger.ipynb to script\n",
      "[NbConvertApp] Writing 3903 bytes to ./notebooks/load_data/data_writer_merger.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/load_data/util.ipynb to script\n",
      "[NbConvertApp] Writing 2273 bytes to ./notebooks/load_data/util.py\n",
      "./notebooks/load_data/__pycache__\n",
      "[NbConvertApp] WARNING | pattern './notebooks/load_data/__pycache__/*.ipynb' matched no files\n",
      "This application is used to convert notebook files (*.ipynb) to various other\n",
      "formats.\n",
      "\n",
      "WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES.\n",
      "\n",
      "Options\n",
      "-------\n",
      "\n",
      "Arguments that take values are actually convenience aliases to full\n",
      "Configurables, whose aliases are listed on the help line. For more information\n",
      "on full configurables, see '--help-all'.\n",
      "\n",
      "--generate-config\n",
      "    generate default config file\n",
      "--execute\n",
      "    Execute the notebook prior to export.\n",
      "-y\n",
      "    Answer yes to any questions instead of prompting.\n",
      "--allow-errors\n",
      "    Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too.\n",
      "--inplace\n",
      "    Run nbconvert in place, overwriting the existing notebook (only \n",
      "    relevant when converting to notebook format)\n",
      "--stdin\n",
      "    read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*'\n",
      "--stdout\n",
      "    Write notebook output to stdout instead of files.\n",
      "--debug\n",
      "    set log level to logging.DEBUG (maximize logging output)\n",
      "--config=<Unicode> (JupyterApp.config_file)\n",
      "    Default: ''\n",
      "    Full path of a config file.\n",
      "--post=<DottedOrNone> (NbConvertApp.postprocessor_class)\n",
      "    Default: ''\n",
      "    PostProcessor class used to write the results of the conversion\n",
      "--output-dir=<Unicode> (FilesWriter.build_directory)\n",
      "    Default: ''\n",
      "    Directory to write output to.  Leave blank to output to the current\n",
      "    directory\n",
      "--to=<Unicode> (NbConvertApp.export_format)\n",
      "    Default: 'html'\n",
      "    The export format to be used, either one of the built-in formats, or a\n",
      "    dotted object name that represents the import path for an `Exporter` class\n",
      "--template=<Unicode> (TemplateExporter.template_file)\n",
      "    Default: ''\n",
      "    Name of the template file to use\n",
      "--output=<Unicode> (NbConvertApp.output_base)\n",
      "    Default: ''\n",
      "    overwrite base name use for output files. can only be used when converting\n",
      "    one notebook at a time.\n",
      "--reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix)\n",
      "    Default: ''\n",
      "    The URL prefix for reveal.js. This can be a a relative URL for a local copy\n",
      "    of reveal.js, or point to a CDN.\n",
      "    For speaker notes to work, a local reveal.js prefix must be used.\n",
      "--nbformat=<Enum> (NotebookExporter.nbformat_version)\n",
      "    Default: 4\n",
      "    Choices: [1, 2, 3, 4]\n",
      "    The nbformat version to write. Use this to downgrade notebooks.\n",
      "--writer=<DottedObjectName> (NbConvertApp.writer_class)\n",
      "    Default: 'FilesWriter'\n",
      "    Writer class used to write the  results of the conversion\n",
      "--log-level=<Enum> (Application.log_level)\n",
      "    Default: 30\n",
      "    Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL')\n",
      "    Set the log level by value or name.\n",
      "\n",
      "To see all available configurables, use `--help-all`\n",
      "\n",
      "Examples\n",
      "--------\n",
      "\n",
      "    The simplest way to use nbconvert is\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb\n",
      "    \n",
      "    which will convert mynotebook.ipynb to the default format (probably HTML).\n",
      "    \n",
      "    You can specify the export format with `--to`.\n",
      "    Options include ['custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides']\n",
      "    \n",
      "    > jupyter nbconvert --to latex mynotebook.ipynb\n",
      "    \n",
      "    Both HTML and LaTeX support multiple output templates. LaTeX includes\n",
      "    'base', 'article' and 'report'.  HTML includes 'basic' and 'full'. You\n",
      "    can specify the flavor of the format used.\n",
      "    \n",
      "    > jupyter nbconvert --to html --template basic mynotebook.ipynb\n",
      "    \n",
      "    You can also pipe the output to stdout, rather than a file\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb --stdout\n",
      "    \n",
      "    PDF is generated via latex\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb --to pdf\n",
      "    \n",
      "    You can get (and serve) a Reveal.js-powered slideshow\n",
      "    \n",
      "    > jupyter nbconvert myslides.ipynb --to slides --post serve\n",
      "    \n",
      "    Multiple notebooks can be given at the command line in a couple of \n",
      "    different ways:\n",
      "    \n",
      "    > jupyter nbconvert notebook*.ipynb\n",
      "    > jupyter nbconvert notebook1.ipynb notebook2.ipynb\n",
      "    \n",
      "    or you can specify the notebooks list in a config file, containing::\n",
      "    \n",
      "        c.NbConvertApp.notebooks = [\"my_notebook.ipynb\"]\n",
      "    \n",
      "    > jupyter nbconvert --config mycfg.py\n",
      "\n",
      "mv: cannot stat './notebooks/load_data/__pycache__/__init__.py': No such file or directory\n",
      "mv: cannot stat './notebooks/load_data/__pycache__/nbfinder.py': No such file or directory\n",
      "sed: can't read ./notebooks/load_data/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/load_data/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/load_data/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/load_data/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/load_data/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/load_data/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/load_data/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/load_data/__pycache__/*.py: No such file or directory\n",
      "rm: cannot remove './notebooks/load_data/__pycache__/*.bak': No such file or directory\n",
      "mv: cannot stat './notebooks/load_data/__pycache__/*.py': No such file or directory\n",
      "mv: cannot stat './notebooks/load_data/__pycache__/__init__.pyc': No such file or directory\n",
      "mv: cannot stat './notebooks/load_data/__pycache__/nbfinder.pyc': No such file or directory\n",
      "cp: cannot stat './notebooks/load_data/__pycache__/nbfinder.py': No such file or directory\n",
      "cp: cannot stat './notebooks/load_data/__pycache__/__init__.py': No such file or directory\n",
      "./notebooks/metrics\n",
      "[NbConvertApp] Converting notebook ./notebooks/metrics/metrics_processor.ipynb to script\n",
      "[NbConvertApp] Writing 3662 bytes to ./notebooks/metrics/metrics_processor.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/metrics/objectives.ipynb to script\n",
      "[NbConvertApp] Writing 2864 bytes to ./notebooks/metrics/objectives.py\n",
      "./notebooks/networks\n",
      "[NbConvertApp] Converting notebook ./notebooks/networks/anom_ae.ipynb to script\n",
      "[NbConvertApp] Writing 5157 bytes to ./notebooks/networks/anom_ae.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/networks/binary_classifier.ipynb to script\n",
      "[NbConvertApp] Writing 5723 bytes to ./notebooks/networks/binary_classifier.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/networks/binary_classifier_caffe.ipynb to script\n",
      "[NbConvertApp] Writing 5931 bytes to ./notebooks/networks/binary_classifier_caffe.py\n",
      "./notebooks/plotting\n",
      "[NbConvertApp] Converting notebook ./notebooks/plotting/curve_plotter.ipynb to script\n",
      "[NbConvertApp] Writing 2299 bytes to ./notebooks/plotting/curve_plotter.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/plotting/plot_images.ipynb to script\n",
      "[NbConvertApp] Writing 4428 bytes to ./notebooks/plotting/plot_images.py\n",
      "./notebooks/printing\n",
      "[NbConvertApp] Converting notebook ./notebooks/printing/print_n_plot.ipynb to script\n",
      "[NbConvertApp] Writing 4415 bytes to ./notebooks/printing/print_n_plot.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/printing/print_utils.ipynb to script\n",
      "[NbConvertApp] Writing 1563 bytes to ./notebooks/printing/print_utils.py\n",
      "./notebooks/configs\n",
      "[NbConvertApp] Converting notebook ./notebooks/configs/setup_configs.ipynb to script\n",
      "[NbConvertApp] Writing 4056 bytes to ./notebooks/configs/setup_configs.py\n",
      "[NbConvertApp] Converting notebook ./notebooks/configs/setup_configs_caffe.ipynb to script\n",
      "[NbConvertApp] Writing 4096 bytes to ./notebooks/configs/setup_configs_caffe.py\n",
      "./notebooks/configs/__pycache__\n",
      "[NbConvertApp] WARNING | pattern './notebooks/configs/__pycache__/*.ipynb' matched no files\n",
      "This application is used to convert notebook files (*.ipynb) to various other\n",
      "formats.\n",
      "\n",
      "WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES.\n",
      "\n",
      "Options\n",
      "-------\n",
      "\n",
      "Arguments that take values are actually convenience aliases to full\n",
      "Configurables, whose aliases are listed on the help line. For more information\n",
      "on full configurables, see '--help-all'.\n",
      "\n",
      "--allow-errors\n",
      "    Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too.\n",
      "--inplace\n",
      "    Run nbconvert in place, overwriting the existing notebook (only \n",
      "    relevant when converting to notebook format)\n",
      "--debug\n",
      "    set log level to logging.DEBUG (maximize logging output)\n",
      "-y\n",
      "    Answer yes to any questions instead of prompting.\n",
      "--stdin\n",
      "    read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*'\n",
      "--stdout\n",
      "    Write notebook output to stdout instead of files.\n",
      "--execute\n",
      "    Execute the notebook prior to export.\n",
      "--generate-config\n",
      "    generate default config file\n",
      "--output-dir=<Unicode> (FilesWriter.build_directory)\n",
      "    Default: ''\n",
      "    Directory to write output to.  Leave blank to output to the current\n",
      "    directory\n",
      "--config=<Unicode> (JupyterApp.config_file)\n",
      "    Default: ''\n",
      "    Full path of a config file.\n",
      "--template=<Unicode> (TemplateExporter.template_file)\n",
      "    Default: ''\n",
      "    Name of the template file to use\n",
      "--output=<Unicode> (NbConvertApp.output_base)\n",
      "    Default: ''\n",
      "    overwrite base name use for output files. can only be used when converting\n",
      "    one notebook at a time.\n",
      "--reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix)\n",
      "    Default: ''\n",
      "    The URL prefix for reveal.js. This can be a a relative URL for a local copy\n",
      "    of reveal.js, or point to a CDN.\n",
      "    For speaker notes to work, a local reveal.js prefix must be used.\n",
      "--to=<Unicode> (NbConvertApp.export_format)\n",
      "    Default: 'html'\n",
      "    The export format to be used, either one of the built-in formats, or a\n",
      "    dotted object name that represents the import path for an `Exporter` class\n",
      "--writer=<DottedObjectName> (NbConvertApp.writer_class)\n",
      "    Default: 'FilesWriter'\n",
      "    Writer class used to write the  results of the conversion\n",
      "--log-level=<Enum> (Application.log_level)\n",
      "    Default: 30\n",
      "    Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL')\n",
      "    Set the log level by value or name.\n",
      "--post=<DottedOrNone> (NbConvertApp.postprocessor_class)\n",
      "    Default: ''\n",
      "    PostProcessor class used to write the results of the conversion\n",
      "--nbformat=<Enum> (NotebookExporter.nbformat_version)\n",
      "    Default: 4\n",
      "    Choices: [1, 2, 3, 4]\n",
      "    The nbformat version to write. Use this to downgrade notebooks.\n",
      "\n",
      "To see all available configurables, use `--help-all`\n",
      "\n",
      "Examples\n",
      "--------\n",
      "\n",
      "    The simplest way to use nbconvert is\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb\n",
      "    \n",
      "    which will convert mynotebook.ipynb to the default format (probably HTML).\n",
      "    \n",
      "    You can specify the export format with `--to`.\n",
      "    Options include ['custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides']\n",
      "    \n",
      "    > jupyter nbconvert --to latex mynotebook.ipynb\n",
      "    \n",
      "    Both HTML and LaTeX support multiple output templates. LaTeX includes\n",
      "    'base', 'article' and 'report'.  HTML includes 'basic' and 'full'. You\n",
      "    can specify the flavor of the format used.\n",
      "    \n",
      "    > jupyter nbconvert --to html --template basic mynotebook.ipynb\n",
      "    \n",
      "    You can also pipe the output to stdout, rather than a file\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb --stdout\n",
      "    \n",
      "    PDF is generated via latex\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb --to pdf\n",
      "    \n",
      "    You can get (and serve) a Reveal.js-powered slideshow\n",
      "    \n",
      "    > jupyter nbconvert myslides.ipynb --to slides --post serve\n",
      "    \n",
      "    Multiple notebooks can be given at the command line in a couple of \n",
      "    different ways:\n",
      "    \n",
      "    > jupyter nbconvert notebook*.ipynb\n",
      "    > jupyter nbconvert notebook1.ipynb notebook2.ipynb\n",
      "    \n",
      "    or you can specify the notebooks list in a config file, containing::\n",
      "    \n",
      "        c.NbConvertApp.notebooks = [\"my_notebook.ipynb\"]\n",
      "    \n",
      "    > jupyter nbconvert --config mycfg.py\n",
      "\n",
      "mv: cannot stat './notebooks/configs/__pycache__/__init__.py': No such file or directory\n",
      "mv: cannot stat './notebooks/configs/__pycache__/nbfinder.py': No such file or directory\n",
      "sed: can't read ./notebooks/configs/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/configs/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/configs/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/configs/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/configs/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/configs/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/configs/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/configs/__pycache__/*.py: No such file or directory\n",
      "rm: cannot remove './notebooks/configs/__pycache__/*.bak': No such file or directory\n",
      "mv: cannot stat './notebooks/configs/__pycache__/*.py': No such file or directory\n",
      "mv: cannot stat './notebooks/configs/__pycache__/__init__.pyc': No such file or directory\n",
      "mv: cannot stat './notebooks/configs/__pycache__/nbfinder.pyc': No such file or directory\n",
      "cp: cannot stat './notebooks/configs/__pycache__/nbfinder.py': No such file or directory\n",
      "cp: cannot stat './notebooks/configs/__pycache__/__init__.py': No such file or directory\n",
      "./notebooks/__pycache__\n",
      "[NbConvertApp] WARNING | pattern './notebooks/__pycache__/*.ipynb' matched no files\n",
      "This application is used to convert notebook files (*.ipynb) to various other\n",
      "formats.\n",
      "\n",
      "WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES.\n",
      "\n",
      "Options\n",
      "-------\n",
      "\n",
      "Arguments that take values are actually convenience aliases to full\n",
      "Configurables, whose aliases are listed on the help line. For more information\n",
      "on full configurables, see '--help-all'.\n",
      "\n",
      "--debug\n",
      "    set log level to logging.DEBUG (maximize logging output)\n",
      "--inplace\n",
      "    Run nbconvert in place, overwriting the existing notebook (only \n",
      "    relevant when converting to notebook format)\n",
      "--stdout\n",
      "    Write notebook output to stdout instead of files.\n",
      "--generate-config\n",
      "    generate default config file\n",
      "--execute\n",
      "    Execute the notebook prior to export.\n",
      "-y\n",
      "    Answer yes to any questions instead of prompting.\n",
      "--allow-errors\n",
      "    Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too.\n",
      "--stdin\n",
      "    read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*'\n",
      "--output-dir=<Unicode> (FilesWriter.build_directory)\n",
      "    Default: ''\n",
      "    Directory to write output to.  Leave blank to output to the current\n",
      "    directory\n",
      "--nbformat=<Enum> (NotebookExporter.nbformat_version)\n",
      "    Default: 4\n",
      "    Choices: [1, 2, 3, 4]\n",
      "    The nbformat version to write. Use this to downgrade notebooks.\n",
      "--template=<Unicode> (TemplateExporter.template_file)\n",
      "    Default: ''\n",
      "    Name of the template file to use\n",
      "--output=<Unicode> (NbConvertApp.output_base)\n",
      "    Default: ''\n",
      "    overwrite base name use for output files. can only be used when converting\n",
      "    one notebook at a time.\n",
      "--reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix)\n",
      "    Default: ''\n",
      "    The URL prefix for reveal.js. This can be a a relative URL for a local copy\n",
      "    of reveal.js, or point to a CDN.\n",
      "    For speaker notes to work, a local reveal.js prefix must be used.\n",
      "--post=<DottedOrNone> (NbConvertApp.postprocessor_class)\n",
      "    Default: ''\n",
      "    PostProcessor class used to write the results of the conversion\n",
      "--log-level=<Enum> (Application.log_level)\n",
      "    Default: 30\n",
      "    Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL')\n",
      "    Set the log level by value or name.\n",
      "--to=<Unicode> (NbConvertApp.export_format)\n",
      "    Default: 'html'\n",
      "    The export format to be used, either one of the built-in formats, or a\n",
      "    dotted object name that represents the import path for an `Exporter` class\n",
      "--config=<Unicode> (JupyterApp.config_file)\n",
      "    Default: ''\n",
      "    Full path of a config file.\n",
      "--writer=<DottedObjectName> (NbConvertApp.writer_class)\n",
      "    Default: 'FilesWriter'\n",
      "    Writer class used to write the  results of the conversion\n",
      "\n",
      "To see all available configurables, use `--help-all`\n",
      "\n",
      "Examples\n",
      "--------\n",
      "\n",
      "    The simplest way to use nbconvert is\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb\n",
      "    \n",
      "    which will convert mynotebook.ipynb to the default format (probably HTML).\n",
      "    \n",
      "    You can specify the export format with `--to`.\n",
      "    Options include ['custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides']\n",
      "    \n",
      "    > jupyter nbconvert --to latex mynotebook.ipynb\n",
      "    \n",
      "    Both HTML and LaTeX support multiple output templates. LaTeX includes\n",
      "    'base', 'article' and 'report'.  HTML includes 'basic' and 'full'. You\n",
      "    can specify the flavor of the format used.\n",
      "    \n",
      "    > jupyter nbconvert --to html --template basic mynotebook.ipynb\n",
      "    \n",
      "    You can also pipe the output to stdout, rather than a file\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb --stdout\n",
      "    \n",
      "    PDF is generated via latex\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb --to pdf\n",
      "    \n",
      "    You can get (and serve) a Reveal.js-powered slideshow\n",
      "    \n",
      "    > jupyter nbconvert myslides.ipynb --to slides --post serve\n",
      "    \n",
      "    Multiple notebooks can be given at the command line in a couple of \n",
      "    different ways:\n",
      "    \n",
      "    > jupyter nbconvert notebook*.ipynb\n",
      "    > jupyter nbconvert notebook1.ipynb notebook2.ipynb\n",
      "    \n",
      "    or you can specify the notebooks list in a config file, containing::\n",
      "    \n",
      "        c.NbConvertApp.notebooks = [\"my_notebook.ipynb\"]\n",
      "    \n",
      "    > jupyter nbconvert --config mycfg.py\n",
      "\n",
      "mv: cannot stat './notebooks/__pycache__/__init__.py': No such file or directory\n",
      "mv: cannot stat './notebooks/__pycache__/nbfinder.py': No such file or directory\n",
      "sed: can't read ./notebooks/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/__pycache__/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/__pycache__/*.py: No such file or directory\n",
      "rm: cannot remove './notebooks/__pycache__/*.bak': No such file or directory\n",
      "mv: cannot stat './notebooks/__pycache__/*.py': No such file or directory\n",
      "mv: cannot stat './notebooks/__pycache__/__init__.pyc': No such file or directory\n",
      "mv: cannot stat './notebooks/__pycache__/nbfinder.pyc': No such file or directory\n",
      "cp: cannot stat './notebooks/__pycache__/nbfinder.py': No such file or directory\n",
      "cp: cannot stat './notebooks/__pycache__/__init__.py': No such file or directory\n",
      "./notebooks/plots\n",
      "[NbConvertApp] WARNING | pattern './notebooks/plots/*.ipynb' matched no files\n",
      "This application is used to convert notebook files (*.ipynb) to various other\n",
      "formats.\n",
      "\n",
      "WARNING: THE COMMANDLINE INTERFACE MAY CHANGE IN FUTURE RELEASES.\n",
      "\n",
      "Options\n",
      "-------\n",
      "\n",
      "Arguments that take values are actually convenience aliases to full\n",
      "Configurables, whose aliases are listed on the help line. For more information\n",
      "on full configurables, see '--help-all'.\n",
      "\n",
      "--generate-config\n",
      "    generate default config file\n",
      "--debug\n",
      "    set log level to logging.DEBUG (maximize logging output)\n",
      "-y\n",
      "    Answer yes to any questions instead of prompting.\n",
      "--stdin\n",
      "    read a single notebook file from stdin. Write the resulting notebook with default basename 'notebook.*'\n",
      "--allow-errors\n",
      "    Continue notebook execution even if one of the cells throws an error and include the error message in the cell output (the default behaviour is to abort conversion). This flag is only relevant if '--execute' was specified, too.\n",
      "--inplace\n",
      "    Run nbconvert in place, overwriting the existing notebook (only \n",
      "    relevant when converting to notebook format)\n",
      "--execute\n",
      "    Execute the notebook prior to export.\n",
      "--stdout\n",
      "    Write notebook output to stdout instead of files.\n",
      "--writer=<DottedObjectName> (NbConvertApp.writer_class)\n",
      "    Default: 'FilesWriter'\n",
      "    Writer class used to write the  results of the conversion\n",
      "--reveal-prefix=<Unicode> (SlidesExporter.reveal_url_prefix)\n",
      "    Default: ''\n",
      "    The URL prefix for reveal.js. This can be a a relative URL for a local copy\n",
      "    of reveal.js, or point to a CDN.\n",
      "    For speaker notes to work, a local reveal.js prefix must be used.\n",
      "--output-dir=<Unicode> (FilesWriter.build_directory)\n",
      "    Default: ''\n",
      "    Directory to write output to.  Leave blank to output to the current\n",
      "    directory\n",
      "--to=<Unicode> (NbConvertApp.export_format)\n",
      "    Default: 'html'\n",
      "    The export format to be used, either one of the built-in formats, or a\n",
      "    dotted object name that represents the import path for an `Exporter` class\n",
      "--output=<Unicode> (NbConvertApp.output_base)\n",
      "    Default: ''\n",
      "    overwrite base name use for output files. can only be used when converting\n",
      "    one notebook at a time.\n",
      "--template=<Unicode> (TemplateExporter.template_file)\n",
      "    Default: ''\n",
      "    Name of the template file to use\n",
      "--config=<Unicode> (JupyterApp.config_file)\n",
      "    Default: ''\n",
      "    Full path of a config file.\n",
      "--post=<DottedOrNone> (NbConvertApp.postprocessor_class)\n",
      "    Default: ''\n",
      "    PostProcessor class used to write the results of the conversion\n",
      "--nbformat=<Enum> (NotebookExporter.nbformat_version)\n",
      "    Default: 4\n",
      "    Choices: [1, 2, 3, 4]\n",
      "    The nbformat version to write. Use this to downgrade notebooks.\n",
      "--log-level=<Enum> (Application.log_level)\n",
      "    Default: 30\n",
      "    Choices: (0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL')\n",
      "    Set the log level by value or name.\n",
      "\n",
      "To see all available configurables, use `--help-all`\n",
      "\n",
      "Examples\n",
      "--------\n",
      "\n",
      "    The simplest way to use nbconvert is\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb\n",
      "    \n",
      "    which will convert mynotebook.ipynb to the default format (probably HTML).\n",
      "    \n",
      "    You can specify the export format with `--to`.\n",
      "    Options include ['custom', 'html', 'latex', 'markdown', 'notebook', 'pdf', 'python', 'rst', 'script', 'slides']\n",
      "    \n",
      "    > jupyter nbconvert --to latex mynotebook.ipynb\n",
      "    \n",
      "    Both HTML and LaTeX support multiple output templates. LaTeX includes\n",
      "    'base', 'article' and 'report'.  HTML includes 'basic' and 'full'. You\n",
      "    can specify the flavor of the format used.\n",
      "    \n",
      "    > jupyter nbconvert --to html --template basic mynotebook.ipynb\n",
      "    \n",
      "    You can also pipe the output to stdout, rather than a file\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb --stdout\n",
      "    \n",
      "    PDF is generated via latex\n",
      "    \n",
      "    > jupyter nbconvert mynotebook.ipynb --to pdf\n",
      "    \n",
      "    You can get (and serve) a Reveal.js-powered slideshow\n",
      "    \n",
      "    > jupyter nbconvert myslides.ipynb --to slides --post serve\n",
      "    \n",
      "    Multiple notebooks can be given at the command line in a couple of \n",
      "    different ways:\n",
      "    \n",
      "    > jupyter nbconvert notebook*.ipynb\n",
      "    > jupyter nbconvert notebook1.ipynb notebook2.ipynb\n",
      "    \n",
      "    or you can specify the notebooks list in a config file, containing::\n",
      "    \n",
      "        c.NbConvertApp.notebooks = [\"my_notebook.ipynb\"]\n",
      "    \n",
      "    > jupyter nbconvert --config mycfg.py\n",
      "\n",
      "mv: cannot stat './notebooks/plots/__init__.py': No such file or directory\n",
      "mv: cannot stat './notebooks/plots/nbfinder.py': No such file or directory\n",
      "sed: can't read ./notebooks/plots/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/plots/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/plots/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/plots/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/plots/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/plots/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/plots/*.py: No such file or directory\n",
      "sed: can't read ./notebooks/plots/*.py: No such file or directory\n",
      "rm: cannot remove './notebooks/plots/*.bak': No such file or directory\n",
      "mv: cannot stat './notebooks/plots/*.py': No such file or directory\n",
      "mv: cannot stat './notebooks/plots/__init__.pyc': No such file or directory\n",
      "mv: cannot stat './notebooks/plots/nbfinder.pyc': No such file or directory\n",
      "cp: cannot stat './notebooks/plots/nbfinder.py': No such file or directory\n",
      "cp: cannot stat './notebooks/plots/__init__.py': No such file or directory\n",
      "[NbConvertApp] Converting notebook ./atlas_main.ipynb to script\n",
      "[NbConvertApp] Writing 545 bytes to ./atlas_main.py\n",
      "[NbConvertApp] Converting notebook ./atlas_main_caffe.ipynb to script\n",
      "[NbConvertApp] Writing 547 bytes to ./atlas_main_caffe.py\n",
      "[NbConvertApp] Converting notebook ./convert_nb_to_scripts.ipynb to script\n",
      "[NbConvertApp] Writing 2198 bytes to ./convert_nb_to_scripts.py\n"
     ]
    }
   ],
   "source": [
    "for dirpath, dirs, files in os.walk(\"./notebooks\"):\n",
    "    if not \".ipynb_checkpoint\" in dirpath:\n",
    "        print(dirpath)\n",
    "        convert_nb_to_script(dirpath)\n",
    "convert_nb_to_script(\".\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "anaconda-cloud": {},
  "kernelspec": {
   "display_name": "Python [deeplearning]",
   "language": "python",
   "name": "Python [deeplearning]"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.5.2"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 0
}