From 464da7bdf1168cdae85832c5b56788eb4ece79f3 Mon Sep 17 00:00:00 2001 From: Hugo Gruson <10783929+Bisaloo@users.noreply.github.com> Date: Mon, 15 Jul 2024 09:40:59 +0200 Subject: [PATCH] Fix equations on pkgdown >= 2.1.0 --- vignettes/design-principles.Rmd | 2 -- vignettes/developer-walkthrough.Rmd | 2 -- vignettes/epidemics.Rmd | 2 -- vignettes/finalsize_comparison.Rmd | 2 -- vignettes/model_diphtheria.Rmd | 2 -- vignettes/model_ebola.Rmd | 2 -- vignettes/model_vacamole.Rmd | 2 -- vignettes/modelling_interventions.Rmd | 2 -- vignettes/modelling_multiple_interventions.Rmd | 2 -- vignettes/modelling_param_uncertainty.Rmd | 2 -- vignettes/modelling_rate_interventions.Rmd | 2 -- vignettes/modelling_scenarios.Rmd | 2 -- vignettes/modelling_time_dependence.Rmd | 2 -- vignettes/modelling_vaccination.Rmd | 2 -- 14 files changed, 28 deletions(-) diff --git a/vignettes/design-principles.Rmd b/vignettes/design-principles.Rmd index 796d29b5..35b96149 100644 --- a/vignettes/design-principles.Rmd +++ b/vignettes/design-principles.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true vignette: > %\VignetteIndexEntry{Design principles for epidemics} %\VignetteEncoding{UTF-8} diff --git a/vignettes/developer-walkthrough.Rmd b/vignettes/developer-walkthrough.Rmd index 0f702dfd..6bbb2cb7 100644 --- a/vignettes/developer-walkthrough.Rmd +++ b/vignettes/developer-walkthrough.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true vignette: > %\VignetteIndexEntry{Guide to developing epidemics features} %\VignetteEncoding{UTF-8} diff --git a/vignettes/epidemics.Rmd b/vignettes/epidemics.Rmd index df51c7ad..a099199d 100644 --- a/vignettes/epidemics.Rmd +++ b/vignettes/epidemics.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/finalsize_comparison.Rmd b/vignettes/finalsize_comparison.Rmd index 440dbdfd..8b3be4ef 100644 --- a/vignettes/finalsize_comparison.Rmd +++ b/vignettes/finalsize_comparison.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/model_diphtheria.Rmd b/vignettes/model_diphtheria.Rmd index 4955450a..8e93d936 100644 --- a/vignettes/model_diphtheria.Rmd +++ b/vignettes/model_diphtheria.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/model_ebola.Rmd b/vignettes/model_ebola.Rmd index d217be16..14821b5e 100644 --- a/vignettes/model_ebola.Rmd +++ b/vignettes/model_ebola.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/model_vacamole.Rmd b/vignettes/model_vacamole.Rmd index d84ba2e3..36bd0ad2 100644 --- a/vignettes/model_vacamole.Rmd +++ b/vignettes/model_vacamole.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/modelling_interventions.Rmd b/vignettes/modelling_interventions.Rmd index cb222049..ffbb1500 100644 --- a/vignettes/modelling_interventions.Rmd +++ b/vignettes/modelling_interventions.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/modelling_multiple_interventions.Rmd b/vignettes/modelling_multiple_interventions.Rmd index facef5e3..eb94c95e 100644 --- a/vignettes/modelling_multiple_interventions.Rmd +++ b/vignettes/modelling_multiple_interventions.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true vignette: > %\VignetteIndexEntry{Modelling overlapping and sequential interventions targeting social contacts} %\VignetteEncoding{UTF-8} diff --git a/vignettes/modelling_param_uncertainty.Rmd b/vignettes/modelling_param_uncertainty.Rmd index 47734da7..88b771ef 100644 --- a/vignettes/modelling_param_uncertainty.Rmd +++ b/vignettes/modelling_param_uncertainty.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/modelling_rate_interventions.Rmd b/vignettes/modelling_rate_interventions.Rmd index 2fa8c738..ed76dadc 100644 --- a/vignettes/modelling_rate_interventions.Rmd +++ b/vignettes/modelling_rate_interventions.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true vignette: > %\VignetteIndexEntry{Modelling interventions that change infection parameters} %\VignetteEncoding{UTF-8} diff --git a/vignettes/modelling_scenarios.Rmd b/vignettes/modelling_scenarios.Rmd index d4bb90eb..8b1d2bcd 100644 --- a/vignettes/modelling_scenarios.Rmd +++ b/vignettes/modelling_scenarios.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/modelling_time_dependence.Rmd b/vignettes/modelling_time_dependence.Rmd index ddc25d7e..724715f4 100644 --- a/vignettes/modelling_time_dependence.Rmd +++ b/vignettes/modelling_time_dependence.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true bibliography: references.json link-citations: true vignette: > diff --git a/vignettes/modelling_vaccination.Rmd b/vignettes/modelling_vaccination.Rmd index 64e04454..a74b75aa 100644 --- a/vignettes/modelling_vaccination.Rmd +++ b/vignettes/modelling_vaccination.Rmd @@ -4,8 +4,6 @@ output: bookdown::html_vignette2: fig_caption: yes code_folding: show -pkgdown: - as_is: true vignette: > %\VignetteIndexEntry{Modelling the effect of a vaccination campaign} %\VignetteEngine{knitr::rmarkdown}