diff --git a/utils/indigo-service/backend/service/tests/api/indigo_test.py b/utils/indigo-service/backend/service/tests/api/indigo_test.py index 273e1b6209..cb34948803 100644 --- a/utils/indigo-service/backend/service/tests/api/indigo_test.py +++ b/utils/indigo-service/backend/service/tests/api/indigo_test.py @@ -954,11 +954,11 @@ def test_layout(self): """ 6 6 0 0 0 0 0 0 0 0999 V2000 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - -1.3856 -0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - -1.3856 -2.4000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 0.0000 -3.2000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 1.3856 -2.4000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 1.3856 -0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + -0.8660 -0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + -0.8660 -1.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 0.0000 -2.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 0.8660 -1.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 0.8660 -0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 0 0 0 2 3 1 0 0 0 0 3 4 2 0 0 0 0 @@ -985,9 +985,9 @@ def test_layout_selective(self): self.assertEqual( """ 3 2 0 0 0 0 0 0 0 0999 V2000 - -1.3856 0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + -0.8660 0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 1.3856 0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 0.8660 0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 1 0 0 0 0 M END""", @@ -1095,12 +1095,12 @@ def test_layout_selective_reaction(self): -INDIGO-01000000002D 6 6 0 0 0 0 0 0 0 0999 V2000 - 2.1856 1.6000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 0.8000 0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 0.8000 -0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 2.1856 -1.6000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 3.5713 -0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 3.5713 0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 1.3660 1.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 0.5000 0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 0.5000 -0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 1.3660 -1.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 2.2321 -0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 2.2321 0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 2 0 0 0 0 3 4 1 0 0 0 0 @@ -1113,18 +1113,18 @@ def test_layout_selective_reaction(self): -INDIGO-01000000002D 12 13 0 0 0 0 0 0 0 0999 V2000 - 7.5713 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 8.3713 1.3856 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 9.9713 1.3856 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 10.7713 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 9.9713 -1.3856 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 8.3713 -1.3856 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 12.3713 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 13.1713 1.3856 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 14.7713 1.3856 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 15.5713 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 14.7713 -1.3856 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 13.1713 -1.3856 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 4.7321 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 5.2321 0.8660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 6.2321 0.8660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 6.7321 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 6.2321 -0.8660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 5.2321 -0.8660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 7.7321 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 8.2321 0.8660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 9.2321 0.8660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 9.7321 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 9.2321 -0.8660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 8.2321 -0.8660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 2 0 0 0 0 3 4 1 0 0 0 0 @@ -1144,12 +1144,12 @@ def test_layout_selective_reaction(self): -INDIGO-01000000002D 6 6 0 0 0 0 0 0 0 0999 V2000 - 21.7569 1.6000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 20.3713 0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 20.3713 -0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 21.7569 -1.6000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 23.1426 -0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 - 23.1426 0.8000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 13.5981 1.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 12.7321 0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 12.7321 -0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 13.5981 -1.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 14.4641 -0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 + 14.4641 0.5000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 2 0 0 0 0 3 4 1 0 0 0 0 diff --git a/utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket b/utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket index 43647fb84d..9fe5bc097b 100644 --- a/utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket +++ b/utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket @@ -1 +1 @@ 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diff --git a/utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket b/utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket index 7731afc320..85c80d6dfc 100644 --- a/utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket +++ b/utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket @@ -1 +1 @@ -{"root":{"nodes":[{"$ref":"ambiguousMonomer-0"},{"$ref":"ambiguousMonomer-1"}],"templates":[{"$ref":"monomerTemplate-D___Aspartic acid"},{"$ref":"monomerTemplate-N___Asparagine"},{"$ref":"monomerTemplate-I___Isoleucine"},{"$ref":"ambiguousMonomerTemplate-Var0"},{"$ref":"ambiguousMonomerTemplate-Var1"}]},"ambiguousMonomer-0":{"type":"ambiguousMonomer","id":"0","position":{"x":0.000000,"y":-0.000000},"seqid":1,"alias":"Var0","templateId":"Var0"},"ambiguousMonomer-1":{"type":"ambiguousMonomer","id":"1","position":{"x":0.000000,"y":-1.600000},"seqid":2,"alias":"Var1","templateId":"Var1"},"monomerTemplate-D___Aspartic 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diff --git a/utils/indigo-service/backend/service/tests/api/ref/render-eleptical-arrow.png b/utils/indigo-service/backend/service/tests/api/ref/render-eleptical-arrow.png index 39157a278f..5c0b76d4fa 100644 Binary files a/utils/indigo-service/backend/service/tests/api/ref/render-eleptical-arrow.png and b/utils/indigo-service/backend/service/tests/api/ref/render-eleptical-arrow.png differ diff --git a/utils/indigo-service/backend/service/tests/api/ref/rna_fasta_ref.ket b/utils/indigo-service/backend/service/tests/api/ref/rna_fasta_ref.ket index fc17e2d53e..7bd21ef734 100644 --- a/utils/indigo-service/backend/service/tests/api/ref/rna_fasta_ref.ket +++ b/utils/indigo-service/backend/service/tests/api/ref/rna_fasta_ref.ket @@ -1 +1 @@ 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