Steps to process the data in a computer with Linux OS and internet access.
docker pull nunofonseca/msi:latest
chcon -Rt svirt_sandbox_file_t $PWD
cd fastq; ./download.sh ; cd ..
./scripts/msi_install.sh -i . -x blast_db
This step will take a considerable amount of time and it will require about 80GB of storage.
./process_data.sh
The files produced will be placed in the results folder.