Can only obtain probability images and not a single class label image

[davodogster]

Are you able to program CATS so that when applying a classifier to an image or a folder of images you can select “labels” instead of “probability maps”. This would give a multi-class label image with each pixel assigned to the class with the highest probability. The probability maps are difficult to deal with when there are more than two classes and you have to arbitrarily chose a threshold for each image (and the user might have 20 or 200 classified probability maps for each class of each image)

[tischi]

will work on it!

[tischi]

Hi Sam,
Both within the CATS GUI as well as within the BatchClassification plugin there is now an option to export as label masks.
Let me know how it works for you!

[davodogster]

Hi Christian, there is no option to export probabilities as one image(label masks) under the "apply classifier to multiple images". It would be a great feature if you could implement this.