diff --git a/batch/pinned-requirements.txt b/batch/pinned-requirements.txt index d1047274ded..b6a2888a0a7 100644 --- a/batch/pinned-requirements.txt +++ b/batch/pinned-requirements.txt @@ -1,6 +1,6 @@ # This file was autogenerated by uv via the following command: # uv pip compile --python-version 3.9 --python-platform linux batch/requirements.txt --output-file=batch/pinned-requirements.txt -aiodocker==0.22.0 +aiodocker==0.22.2 # via -r batch/requirements.txt aiohttp==3.9.5 # via @@ -92,7 +92,7 @@ six==1.16.0 # -c batch/../hail/python/dev/pinned-requirements.txt # -c batch/../hail/python/pinned-requirements.txt # python-dateutil -tenacity==8.4.2 +tenacity==8.5.0 # via # -c batch/../hail/python/pinned-requirements.txt # plotly diff --git a/ci/pinned-requirements.txt b/ci/pinned-requirements.txt index 39fcdb03c83..209635e29cb 100644 --- a/ci/pinned-requirements.txt +++ b/ci/pinned-requirements.txt @@ -1,6 +1,6 @@ # This file was autogenerated by uv via the following command: # uv pip compile --python-version 3.9 --python-platform linux ci/requirements.txt --output-file=ci/pinned-requirements.txt -certifi==2024.6.2 +certifi==2024.7.4 # via # -c ci/../gear/pinned-requirements.txt # -c ci/../hail/python/dev/pinned-requirements.txt @@ -22,7 +22,7 @@ click==8.1.7 # -c ci/../hail/python/dev/pinned-requirements.txt # -c ci/../hail/python/pinned-requirements.txt # zulip -cryptography==42.0.8 +cryptography==43.0.0 # via # -c ci/../hail/python/pinned-requirements.txt # pyjwt diff --git a/gear/pinned-requirements.txt b/gear/pinned-requirements.txt index 06af62e91ef..ff7485d306e 100644 --- a/gear/pinned-requirements.txt +++ b/gear/pinned-requirements.txt @@ -29,12 +29,12 @@ attrs==23.2.0 # -c gear/../hail/python/hailtop/pinned-requirements.txt # -c gear/../hail/python/pinned-requirements.txt # aiohttp -cachetools==5.3.3 +cachetools==5.4.0 # via # -c gear/../hail/python/hailtop/pinned-requirements.txt # -c gear/../hail/python/pinned-requirements.txt # google-auth -certifi==2024.6.2 +certifi==2024.7.4 # via # -c gear/../hail/python/dev/pinned-requirements.txt # -c gear/../hail/python/hailtop/pinned-requirements.txt @@ -56,9 +56,9 @@ frozenlist==1.4.1 # aiosignal google-api-core==2.19.1 # via google-api-python-client -google-api-python-client==2.136.0 +google-api-python-client==2.137.0 # via google-cloud-profiler -google-auth==2.31.0 +google-auth==2.32.0 # via # -c gear/../hail/python/hailtop/pinned-requirements.txt # -c gear/../hail/python/pinned-requirements.txt @@ -154,7 +154,7 @@ rsa==4.9 # -c gear/../hail/python/hailtop/pinned-requirements.txt # -c gear/../hail/python/pinned-requirements.txt # google-auth -setuptools==70.2.0 +setuptools==71.1.0 # via # -c gear/../hail/python/dev/pinned-requirements.txt # kubernetes-asyncio diff --git a/hail/python/dev/pinned-requirements.txt b/hail/python/dev/pinned-requirements.txt index 00425f9bd6e..f1de0543c98 100644 --- a/hail/python/dev/pinned-requirements.txt +++ b/hail/python/dev/pinned-requirements.txt @@ -52,7 +52,7 @@ bleach==6.1.0 # via nbconvert build==1.1.1 # via -r hail/python/dev/requirements.txt -certifi==2024.6.2 +certifi==2024.7.4 # via # -c hail/python/dev/../pinned-requirements.txt # httpcore @@ -107,7 +107,7 @@ docutils==0.18.1 # nbsphinx # sphinx # sphinx-rtd-theme -exceptiongroup==1.2.1 +exceptiongroup==1.2.2 # via # anyio # ipython @@ -122,7 +122,7 @@ fastjsonschema==2.20.0 # via nbformat filelock==3.15.4 # via virtualenv -fonttools==4.53.0 +fonttools==4.53.1 # via matplotlib fqdn==1.5.1 # via jsonschema @@ -139,7 +139,7 @@ httpcore==1.0.5 # via httpx httpx==0.27.0 # via jupyterlab -identify==2.5.36 +identify==2.6.0 # via pre-commit idna==3.7 # via @@ -196,7 +196,7 @@ json5==0.9.25 # via jupyterlab-server jsonpointer==3.0.0 # via jsonschema -jsonschema==4.22.0 +jsonschema==4.23.0 # via # jupyter-events # jupyterlab-server @@ -229,7 +229,7 @@ jupyter-events==0.10.0 # via jupyter-server jupyter-lsp==2.2.5 # via jupyterlab -jupyter-server==2.14.1 +jupyter-server==2.14.2 # via # jupyter-lsp # jupyterlab @@ -238,11 +238,11 @@ jupyter-server==2.14.1 # notebook-shim jupyter-server-terminals==0.5.3 # via jupyter-server -jupyterlab==4.2.3 +jupyterlab==4.2.4 # via notebook jupyterlab-pygments==0.3.0 # via nbconvert -jupyterlab-server==2.27.2 +jupyterlab-server==2.27.3 # via # jupyterlab # notebook @@ -257,7 +257,7 @@ markupsafe==2.1.5 # -c hail/python/dev/../pinned-requirements.txt # jinja2 # nbconvert -matplotlib==3.9.0 +matplotlib==3.9.1 # via -r hail/python/dev/requirements.txt matplotlib-inline==0.1.7 # via @@ -361,7 +361,7 @@ ptyprocess==0.7.0 # via # pexpect # terminado -pure-eval==0.2.2 +pure-eval==0.2.3 # via stack-data py==1.11.0 # via pytest-forked @@ -385,7 +385,7 @@ pyparsing==3.1.2 # via matplotlib pyproject-hooks==1.1.0 # via build -pyright==1.1.370 +pyright==1.1.372 # via -r hail/python/dev/requirements.txt pytest==7.4.4 # via @@ -460,7 +460,7 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -rpds-py==0.18.1 +rpds-py==0.19.0 # via # jsonschema # referencing @@ -468,7 +468,7 @@ ruff==0.1.13 # via -r hail/python/dev/requirements.txt send2trash==1.8.3 # via jupyter-server -setuptools==70.2.0 +setuptools==71.1.0 # via jupyterlab six==1.16.0 # via @@ -501,7 +501,7 @@ sphinxcontrib-applehelp==1.0.8 # via sphinx sphinxcontrib-devhelp==1.0.6 # via sphinx -sphinxcontrib-htmlhelp==2.0.5 +sphinxcontrib-htmlhelp==2.0.6 # via sphinx sphinxcontrib-jquery==4.1 # via sphinx-rtd-theme @@ -509,7 +509,7 @@ sphinxcontrib-jsmath==1.0.1 # via sphinx sphinxcontrib-katex==0.9.10 # via -r hail/python/dev/requirements.txt -sphinxcontrib-qthelp==1.0.7 +sphinxcontrib-qthelp==1.0.8 # via sphinx sphinxcontrib-serializinghtml==1.1.10 # via sphinx @@ -529,7 +529,7 @@ tomli==2.0.1 # jupyterlab # pylint # pytest -tomlkit==0.12.5 +tomlkit==0.13.0 # via pylint tornado==6.4.1 # via @@ -574,7 +574,7 @@ types-pyyaml==6.0.12.20240311 # via -r hail/python/dev/requirements.txt types-requests==2.31.0.6 # via -r hail/python/dev/requirements.txt -types-setuptools==70.1.0.20240627 +types-setuptools==71.0.0.20240722 # via -r hail/python/dev/requirements.txt types-six==1.16.21.20240513 # via -r hail/python/dev/requirements.txt @@ -598,7 +598,7 @@ urllib3==1.26.19 # via # -c hail/python/dev/../pinned-requirements.txt # requests -uv==0.2.21 +uv==0.2.27 # via -r hail/python/dev/requirements.txt virtualenv==20.26.3 # via pre-commit diff --git a/hail/python/hailtop/pinned-requirements.txt b/hail/python/hailtop/pinned-requirements.txt index c8c77a6270f..ef67008c558 100644 --- a/hail/python/hailtop/pinned-requirements.txt +++ b/hail/python/hailtop/pinned-requirements.txt @@ -24,18 +24,18 @@ azure-mgmt-core==1.4.0 # via azure-mgmt-storage azure-mgmt-storage==20.1.0 # via -r hail/python/hailtop/requirements.txt -azure-storage-blob==12.20.0 +azure-storage-blob==12.21.0 # via -r hail/python/hailtop/requirements.txt -boto3==1.34.138 +boto3==1.34.145 # via -r hail/python/hailtop/requirements.txt -botocore==1.34.138 +botocore==1.34.145 # via # -r hail/python/hailtop/requirements.txt # boto3 # s3transfer -cachetools==5.3.3 +cachetools==5.4.0 # via google-auth -certifi==2024.6.2 +certifi==2024.7.4 # via # msrest # requests @@ -49,7 +49,7 @@ click==8.1.7 # via typer commonmark==0.9.1 # via rich -cryptography==42.0.8 +cryptography==43.0.0 # via # azure-identity # azure-storage-blob @@ -62,13 +62,13 @@ frozenlist==1.4.1 # -r hail/python/hailtop/requirements.txt # aiohttp # aiosignal -google-auth==2.31.0 +google-auth==2.32.0 # via # -r hail/python/hailtop/requirements.txt # google-auth-oauthlib google-auth-oauthlib==0.8.0 # via -r hail/python/hailtop/requirements.txt -humanize==1.1.0 +humanize==4.10.0 # via -r hail/python/hailtop/requirements.txt idna==3.7 # via @@ -84,9 +84,9 @@ jmespath==1.0.1 # via # boto3 # botocore -jproperties==2.1.1 +jproperties==2.1.2 # via -r hail/python/hailtop/requirements.txt -msal==1.29.0 +msal==1.30.0 # via # azure-identity # msal-extensions @@ -104,7 +104,7 @@ oauthlib==3.2.2 # via requests-oauthlib orjson==3.10.6 # via -r hail/python/hailtop/requirements.txt -portalocker==2.10.0 +portalocker==2.10.1 # via msal-extensions pyasn1==0.6.0 # via diff --git a/hail/python/hailtop/requirements.txt b/hail/python/hailtop/requirements.txt index e949b0164f8..9739c97beb6 100644 --- a/hail/python/hailtop/requirements.txt +++ b/hail/python/hailtop/requirements.txt @@ -9,7 +9,7 @@ dill>=0.3.6,<0.4 frozenlist>=1.3.1,<2 google-auth>=2.14.1,<3 google-auth-oauthlib>=0.5.2,<1 -humanize>=1.0.0,<2 +humanize>=4.0,<5 janus>=0.6,<1.1 nest_asyncio>=1.5.8,<2 orjson>=3.9.15,<4 diff --git a/hail/python/pinned-requirements.txt b/hail/python/pinned-requirements.txt index 37d03d12068..394193216e0 100644 --- a/hail/python/pinned-requirements.txt +++ b/hail/python/pinned-requirements.txt @@ -45,27 +45,27 @@ azure-mgmt-storage==20.1.0 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt -azure-storage-blob==12.20.0 +azure-storage-blob==12.21.0 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt bokeh==3.3.4 # via -r hail/python/requirements.txt -boto3==1.34.138 +boto3==1.34.145 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt -botocore==1.34.138 +botocore==1.34.145 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt # boto3 # s3transfer -cachetools==5.3.3 +cachetools==5.4.0 # via # -c hail/python/hailtop/pinned-requirements.txt # google-auth -certifi==2024.6.2 +certifi==2024.7.4 # via # -c hail/python/hailtop/pinned-requirements.txt # msrest @@ -89,7 +89,7 @@ commonmark==0.9.1 # rich contourpy==1.2.1 # via bokeh -cryptography==42.0.8 +cryptography==43.0.0 # via # -c hail/python/hailtop/pinned-requirements.txt # azure-identity @@ -110,7 +110,7 @@ frozenlist==1.4.1 # -r hail/python/hailtop/requirements.txt # aiohttp # aiosignal -google-auth==2.31.0 +google-auth==2.32.0 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt @@ -119,7 +119,7 @@ google-auth-oauthlib==0.8.0 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt -humanize==1.1.0 +humanize==4.10.0 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt @@ -144,13 +144,13 @@ jmespath==1.0.1 # -c hail/python/hailtop/pinned-requirements.txt # boto3 # botocore -jproperties==2.1.1 +jproperties==2.1.2 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt markupsafe==2.1.5 # via jinja2 -msal==1.29.0 +msal==1.30.0 # via # -c hail/python/hailtop/pinned-requirements.txt # azure-identity @@ -201,7 +201,7 @@ pillow==10.4.0 # via bokeh plotly==5.22.0 # via -r hail/python/requirements.txt -portalocker==2.10.0 +portalocker==2.10.1 # via # -c hail/python/hailtop/pinned-requirements.txt # msal-extensions @@ -303,7 +303,7 @@ tabulate==0.9.0 # via # -c hail/python/hailtop/pinned-requirements.txt # -r hail/python/hailtop/requirements.txt -tenacity==8.4.2 +tenacity==8.5.0 # via plotly tornado==6.4.1 # via bokeh