dependency-reduced-pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>edu.stonybrook.bmi</groupId>
  <artifactId>hatch</artifactId>
  <version>4.0.2</version>
  <build>
    <resources>
      <resource>
        <directory>src/main/resources</directory>
      </resource>
      <resource>
        <directory>src/main/java</directory>
        <includes>
          <include>**</include>
        </includes>
        <excludes>
          <exclude>**/*.java</exclude>
        </excludes>
      </resource>
    </resources>
  </build>
  <profiles>
    <profile>
      <id>jar</id>
      <build>
        <finalName>hatch-${project.version}</finalName>
        <plugins>
          <plugin>
            <artifactId>maven-enforcer-plugin</artifactId>
            <version>3.5.0</version>
            <executions>
              <execution>
                <id>enforce</id>
                <goals>
                  <goal>enforce</goal>
                </goals>
                <configuration>
                  <rules>
                    <banDuplicatePomDependencyVersions />
                  </rules>
                </configuration>
              </execution>
            </executions>
          </plugin>
          <plugin>
            <artifactId>maven-shade-plugin</artifactId>
            <version>3.6.0</version>
            <executions>
              <execution>
                <phase>package</phase>
                <goals>
                  <goal>shade</goal>
                </goals>
              </execution>
            </executions>
            <configuration>
              <shadedArtifactAttached>false</shadedArtifactAttached>
              <transformers>
                <transformer>
                  <mainClass>edu.stonybrook.bmi.hatch.Hatch</mainClass>
                  <manifestEntries>
                    <Multi-Release>true</Multi-Release>
                  </manifestEntries>
                </transformer>
                <transformer />
              </transformers>
              <filters>
                <filter>
                  <artifact>*:*</artifact>
                  <excludes>
                    <exclude>META-INF/*.SF</exclude>
                    <exclude>META-INF/*.DSA</exclude>
                    <exclude>META-INF/*.RSA</exclude>
                  </excludes>
                </filter>
              </filters>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
    <profile>
      <id>native</id>
      <build>
        <plugins>
          <plugin>
            <artifactId>maven-compiler-plugin</artifactId>
            <version>3.13.0</version>
            <configuration>
              <compilerArgs>
                <arg>--add-reads</arg>
                <arg>edu.stonybrook.bmi.hatch=ALL-UNNAMED</arg>
              </compilerArgs>
            </configuration>
          </plugin>
          <plugin>
            <groupId>org.graalvm.buildtools</groupId>
            <artifactId>native-maven-plugin</artifactId>
            <version>0.10.3</version>
            <extensions>true</extensions>
            <executions>
              <execution>
                <id>build-native</id>
                <phase>package</phase>
                <goals>
                  <goal>compile-no-fork</goal>
                </goals>
              </execution>
            </executions>
            <configuration>
              <imageName>hatch</imageName>
              <mainClass>edu.stonybrook.bmi.hatch.Hatch</mainClass>
              <debug>true</debug>
              <skipNativeTests>true</skipNativeTests>
              <verbose>true</verbose>
              <buildArgs>
                <buildArg>--no-fallback</buildArg>
                <buildArg>-H:ConfigurationFileDirectories=config</buildArg>
                <buildArg>--enable-url-protocols=https</buildArg>
                <buildArg>-H:+AddAllCharsets</buildArg>
                <buildArg>--gc=G1</buildArg>
                <buildArg>-H:IncludeResources="logging.properties"</buildArg>
              </buildArgs>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>
  <repositories>
    <repository>
      <id>central</id>
      <name>Central Repository</name>
      <url>https://repo.maven.apache.org/maven2</url>
    </repository>
    <repository>
      <id>ome</id>
      <name>OME Artifactory</name>
      <url>https://artifacts.openmicroscopy.org/artifactory/maven/</url>
    </repository>
    <repository>
      <id>halcyon</id>
      <url>https://cursus.bmi.stonybrookmedicine.edu/releases</url>
    </repository>
  </repositories>
  <dependencies>
    <dependency>
      <groupId>org.apache.jena</groupId>
      <artifactId>apache-jena-libs</artifactId>
      <version>5.1.0</version>
      <type>pom</type>
      <scope>compile</scope>
    </dependency>
  </dependencies>
  <properties>
    <maven.compiler.target>21</maven.compiler.target>
    <twelvemonkeys.version>3.12.0</twelvemonkeys.version>
    <maven.compiler.source>21</maven.compiler.source>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <ver.bioformats>7.3.1</ver.bioformats>
  </properties>
</project>