Integrating local ecological knowledge, ecological monitoring, and computer simulation to evaluate conservation outcomes
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README.md
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R scripts:
- Prefix "analysis_01..." indicates scripts used for analyses and suggested running order.
- Prefix "plotting_01..." indicates scripts used to generate figures and suggested running order.
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results: stores results from R scripts (multiply imputed datasets, model objects, figures, etc.)
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consLettersUtils: a package that contains functions and ggplot themes. It can be installed with devtools:
devtools::install('/path/to/pkg')
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License
- Analysis: run "analysis" scripts using suggested numerical running order from filename prefix.
- Plotting: run "plotting" scripts using suggested numerical running order from filename prefix.
This folder contains all standardized CPUE and morphometric data used in analyses.
- Raw LEK data is available at https://github.com/earlycapistran/PeerJ
This folder contains processed LEK and monitoring data. These datasets were used for all analyses.
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cpue_data.csv: Mean annual CPUE values (LEK and Monitoring) standardized to one 100m net with 12hr soak time.
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morphometric_data.csv: Includes year, weight (Kg), straight carapace length (SCL), curved carapace length (CCL), and indicators for adult and juvenile age groups.
Note: Unpublished raw monitoring data is not included. Please contact the monitoring organizations if you are interested in their data (see Data sources below).
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All data (1952-1983): Early-Capistrán, M.-M., Solana-Arellano, E., Abreu-Grobois, F. A., Narchi, N. E., Garibay-Melo, G., Seminoff, J. A., Koch, V., & Saenz-Arroyo, A. (2020). Quantifying local ecological knowledge to model historical abundance of long-lived, heavily-exploited fauna. PeerJ, 8, e9494. https://doi.org/10.7717/peerj.9494
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Full data and code are available at https://github.com/earlycapistran/PeerJ
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1995-2003: Seminoff, J. A., Jones, T. T., Resendiz, A., Nichols, W. J., & Chaloupka, M. Y. (2003). Monitoring green turtles (Chelonia mydas) at a coastal foraging area in Baja California, Mexico: Multiple indices to describe population status. Journal of the Marine Biological Association of the UK, 83(06), 1355-1362.
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2004-2005: Seminoff, J.A. (2005). NOAA. Unpublished raw data.
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2003-2018: Comisión Nacional de Áreas Naturales Protegidas, A.P.F.F. Islas del Golfo de California & Grupo Tortuguero de Bahía de los Ángeles (2018). Unpublished raw data.
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1995-2005: Seminoff, J.A. (2005). NOAA. Unpublished raw data.
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2003-2018: Comisión Nacional de Áreas Naturales Protegidas, A.P.F.F. Islas del Golfo de California & Grupo Tortuguero de Bahía de los Ángeles (2018). Unpublished raw data.
- Michelle María Early Capistrán, [email protected]
Data: Early-Capistrán, M.M., Seminoff, J.A., Comisión Nacional de Áreas Naturales Protegidas, Grupo Tortuguero de Bahía de los Ángeles (2022) Data from: "Integrating local ecological knowledge, ecological monitoring, and computer simulation to evaluate conservation outcomes." GitHub. https://github.com/earlycapistran/miceNls.
Code: Early-Capistrán, M.M. (2022) Code from: "Integrating local ecological knowledge, ecological monitoring, and computer simulation to evaluate conservation outcomes." GitHub. https://github.com/earlycapistran/miceNls