dxWDL v1.48.2

• Upgrade dxfuse to v0.22.3 to retry 502 errors inside jobs.
• Upgrade dx-download-agent to v0.5.1 to fix retry.

dxWDL 2.0.0-rc2

Changes included in this release candidate version:

• Use wdlTools published in Maven Central rather than local snapshot
• Add special handling for structs when creating output closures
• Improve use of collections with preference to using Vectors over Lists and reduce the use of mutable collections
• Make it possible to run apps built using dxWDL (after applets to apps conversion using dx-toolkit SDK, min. v0.296)
• Split dxWDL into four distinct parts:
  • dx.api: Scala wrapper around dxJava
  • dx.compiler: the client-side workflow compiler
  • dx.exec: the runtime executor
  • dx.core: common code used by both compiler and exec
• Improve file resolving and caching

Upgrade dx-download-agent to v.0.4.0

Upgrade of dx-download-agent to v0.4.0 to fix progress reporting errors and symlink downloads.

dxWDL v2.0.0-rc

• Replaced WOM with wdlTools
• TODO:
  • Publish wdlTools to MavenCentral and update build.sbt
  • Map parameter_meta output parameters, update docs (ExpertOptions.md and Internals.md)
• Replaced Travis with Github Actions for unit testing
• Optimized bulk description of files by replacing system/describeDataObjects with system/findDataObjects API call and scoping file search to projects

Upgrade dx-download-agent

• Upgrade of dx-download-agent which retries 502 errors in jobs
• Optimized bulk description of files by replacing system/describeDataObjects with system/findDataObjects API call and scoping file search to projects

Upgrade of dx-download-agent to v.0.3.0

• Upgrade of dx-download-agent (includes a fix to the early database close issue)
• Fix to describing billTo of a project

Minor updates in logging

• Print dxda and dxfuse versions in applet execution

Minor updates and exectree enhancement

• Improvements to exectree option (see examples)
• Upgrade dxfuse to v0.22.2
• Bug fix in dx-download-agent (https://github.com/dnanexus/dxda/issues/34)

Minor changes

• Limit scatters to 500 elements. Running more than that risks causing platform problems.
• Uprade dxfuse to v0.22.1

Bug fix release

• fixed bug when describing a live (non-archived) hidden file.
• Upgrade dxfuse to v0.21