From fc8f7cc608870975dbf4b12ccfc8700a1d247aa8 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 8 Dec 2022 12:57:50 +0000 Subject: [PATCH] build(deps): bump certifi from 2021.10.8 to 2022.12.7 Bumps [certifi](https://github.com/certifi/python-certifi) from 2021.10.8 to 2022.12.7. - [Release notes](https://github.com/certifi/python-certifi/releases) - [Commits](https://github.com/certifi/python-certifi/compare/2021.10.08...2022.12.07) --- updated-dependencies: - dependency-name: certifi dependency-type: indirect ... Signed-off-by: dependabot[bot] --- poetry.lock | 210 ++++++++++++++++++++++++++++++++++------------------ 1 file changed, 138 insertions(+), 72 deletions(-) diff --git a/poetry.lock b/poetry.lock index 809da9b..ef84921 100644 --- a/poetry.lock +++ b/poetry.lock @@ -32,8 +32,8 @@ idna = ">=2.8" sniffio = ">=1.1" [package.extras] -doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] -test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"] +doc = ["sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"] trio = ["trio (>=0.16)"] [[package]] @@ -54,6 +54,7 @@ python-versions = "~=3.6" [package.dependencies] lazy-object-proxy = ">=1.4.0" +setuptools = ">=20.0" wrapt = ">=1.11,<1.14" [[package]] @@ -81,10 +82,10 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] +dev = ["coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six", "sphinx", "sphinx-notfound-page", "zope.interface"] +docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six", "zope.interface"] +tests-no-zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six"] [[package]] name = "babel" @@ -114,8 +115,8 @@ optional = false python-versions = ">=2.7" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-checkdocs (>=2.4)", "pytest-enabler (>=1.0.1)"] +docs = ["jaraco.packaging (>=8.2)", "rst.linker (>=1.9)", "sphinx"] +testing = ["pytest (>=4.6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-flake8", "pytest-mypy"] [[package]] name = "bandit" @@ -134,11 +135,11 @@ stevedore = ">=1.20.0" [[package]] name = "certifi" -version = "2021.10.8" +version = "2022.12.7" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "cffi" @@ -168,7 +169,7 @@ optional = false python-versions = ">=3.5.0" [package.extras] -unicode_backport = ["unicodedata2"] +unicode-backport = ["unicodedata2"] [[package]] name = "chembl-webresource-client" @@ -229,12 +230,12 @@ python-versions = ">=3.6" cffi = ">=1.12" [package.extras] -docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"] -docstest = ["doc8", "pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"] +docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx_rtd_theme"] +docstest = ["doc8", "pyenchant (>=1.6.11)", "sphinxcontrib-spelling (>=4.0.1)", "twine (>=1.12.0)"] pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"] sdist = ["setuptools-rust (>=0.11.4)"] ssh = ["bcrypt (>=3.1.5)"] -test = ["pytest (>=6.0)", "pytest-cov", "pytest-subtests", "pytest-xdist", "pretend", "iso8601", "pytz", "hypothesis (>=1.11.4,!=3.79.2)"] +test = ["hypothesis (>=1.11.4,!=3.79.2)", "iso8601", "pretend", "pytest (>=6.0)", "pytest-cov", "pytest-subtests", "pytest-xdist", "pytz"] [[package]] name = "cycler" @@ -313,10 +314,10 @@ pydantic = ">=1.6.2,<1.7 || >1.7,<1.7.1 || >1.7.1,<1.7.2 || >1.7.2,<1.7.3 || >1. starlette = "0.16.0" [package.extras] -all = ["requests (>=2.24.0,<3.0.0)", "jinja2 (>=2.11.2,<4.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "itsdangerous (>=1.1.0,<3.0.0)", "pyyaml (>=5.3.1,<6.0.0)", "ujson (>=4.0.1,<5.0.0)", "orjson (>=3.2.1,<4.0.0)", "email_validator (>=1.1.1,<2.0.0)", "uvicorn[standard] (>=0.12.0,<0.16.0)"] -dev = ["python-jose[cryptography] (>=3.3.0,<4.0.0)", "passlib[bcrypt] (>=1.7.2,<2.0.0)", "autoflake (>=1.4.0,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "uvicorn[standard] (>=0.12.0,<0.16.0)"] -doc = ["mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=7.1.9,<8.0.0)", "mdx-include (>=1.4.1,<2.0.0)", "mkdocs-markdownextradata-plugin (>=0.1.7,<0.3.0)", "typer-cli (>=0.0.12,<0.0.13)", "pyyaml (>=5.3.1,<6.0.0)"] -test = ["pytest (>=6.2.4,<7.0.0)", "pytest-cov (>=2.12.0,<4.0.0)", "mypy (==0.910)", "flake8 (>=3.8.3,<4.0.0)", "black (==21.9b0)", "isort (>=5.0.6,<6.0.0)", "requests (>=2.24.0,<3.0.0)", "httpx (>=0.14.0,<0.19.0)", "email_validator (>=1.1.1,<2.0.0)", "sqlalchemy (>=1.3.18,<1.5.0)", "peewee (>=3.13.3,<4.0.0)", "databases[sqlite] (>=0.3.2,<0.6.0)", "orjson (>=3.2.1,<4.0.0)", "ujson (>=4.0.1,<5.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "flask (>=1.1.2,<3.0.0)", "anyio[trio] (>=3.2.1,<4.0.0)", "types-ujson (==0.1.1)", "types-orjson (==3.6.0)", "types-dataclasses (==0.1.7)"] +all = ["email_validator (>=1.1.1,<2.0.0)", "itsdangerous (>=1.1.0,<3.0.0)", "jinja2 (>=2.11.2,<4.0.0)", "orjson (>=3.2.1,<4.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "pyyaml (>=5.3.1,<6.0.0)", "requests (>=2.24.0,<3.0.0)", "ujson (>=4.0.1,<5.0.0)", "uvicorn[standard] (>=0.12.0,<0.16.0)"] +dev = ["autoflake (>=1.4.0,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "passlib[bcrypt] (>=1.7.2,<2.0.0)", "python-jose[cryptography] (>=3.3.0,<4.0.0)", "uvicorn[standard] (>=0.12.0,<0.16.0)"] +doc = ["mdx-include (>=1.4.1,<2.0.0)", "mkdocs (>=1.1.2,<2.0.0)", "mkdocs-markdownextradata-plugin (>=0.1.7,<0.3.0)", "mkdocs-material (>=7.1.9,<8.0.0)", "pyyaml (>=5.3.1,<6.0.0)", "typer-cli (>=0.0.12,<0.0.13)"] +test = ["anyio[trio] (>=3.2.1,<4.0.0)", "black (==21.9b0)", "databases[sqlite] (>=0.3.2,<0.6.0)", "email_validator (>=1.1.1,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "flask (>=1.1.2,<3.0.0)", "httpx (>=0.14.0,<0.19.0)", "isort (>=5.0.6,<6.0.0)", "mypy (==0.910)", "orjson (>=3.2.1,<4.0.0)", "peewee (>=3.13.3,<4.0.0)", "pytest (>=6.2.4,<7.0.0)", "pytest-cov (>=2.12.0,<4.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "requests (>=2.24.0,<3.0.0)", "sqlalchemy (>=1.3.18,<1.5.0)", "types-dataclasses (==0.1.7)", "types-orjson (==3.6.0)", "types-ujson (==0.1.1)", "ujson (>=4.0.1,<5.0.0)"] [[package]] name = "filelock" @@ -356,7 +357,7 @@ attrs = ">=19.2.0" flake8 = ">=3.0.0" [package.extras] -dev = ["coverage", "black", "hypothesis", "hypothesmith"] +dev = ["black", "coverage", "hypothesis", "hypothesmith"] [[package]] name = "flake8-docstrings" @@ -503,6 +504,7 @@ pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" pygments = "*" +setuptools = ">=18.5" traitlets = ">=4.2" [package.extras] @@ -511,10 +513,10 @@ doc = ["Sphinx (>=1.3)"] kernel = ["ipykernel"] nbconvert = ["nbconvert"] nbformat = ["nbformat"] -notebook = ["notebook", "ipywidgets"] +notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] -test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"] +test = ["ipykernel", "nbformat", "nose (>=0.10.1)", "numpy (>=1.17)", "pygments", "requests", "testpath"] [[package]] name = "itsdangerous" @@ -575,7 +577,7 @@ pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" [package.extras] format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] -format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] +format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] [[package]] name = "kiwisolver" @@ -614,7 +616,7 @@ colorama = {version = ">=0.3.4", markers = "sys_platform == \"win32\""} win32-setctime = {version = ">=1.0.0", markers = "sys_platform == \"win32\""} [package.extras] -dev = ["codecov (>=2.0.15)", "colorama (>=0.3.4)", "flake8 (>=3.7.7)", "tox (>=3.9.0)", "tox-travis (>=0.12)", "pytest (>=4.6.2)", "pytest-cov (>=2.7.1)", "Sphinx (>=2.2.1)", "sphinx-autobuild (>=0.7.1)", "sphinx-rtd-theme (>=0.4.3)", "black (>=19.10b0)", "isort (>=5.1.1)"] +dev = ["Sphinx (>=2.2.1)", "black (>=19.10b0)", "codecov (>=2.0.15)", "colorama (>=0.3.4)", "flake8 (>=3.7.7)", "isort (>=5.1.1)", "pytest (>=4.6.2)", "pytest-cov (>=2.7.1)", "sphinx-autobuild (>=0.7.1)", "sphinx-rtd-theme (>=0.4.3)", "tox (>=3.9.0)", "tox-travis (>=0.12)"] [[package]] name = "lxml" @@ -627,7 +629,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" [package.extras] cssselect = ["cssselect (>=0.7)"] html5 = ["html5lib"] -htmlsoup = ["beautifulsoup4"] +htmlsoup = ["BeautifulSoup4"] source = ["Cython (>=0.29.7)"] [[package]] @@ -724,7 +726,7 @@ requests = ">=2.21.0" rfc3987 = ">=1.3.8" [package.extras] -dev = ["alabaster (==0.7.11)", "aspy.yaml (==1.1.1)", "atomicwrites (==1.1.5)", "attrs (==18.1.0)", "babel (==2.6.0)", "bumpversion (==0.5.3)", "certifi (==2018.4.16)", "cfgv (==2.0.0)", "chardet (==3.0.4)", "click (==6.7)", "codecov (==2.0.15)", "coverage (==4.5.1)", "docutils (==0.14)", "hypothesis (==4.32.3)", "identify (==1.1.4)", "idna (==2.7)", "imagesize (==1.0.0)", "importlib-metadata (==0.18)", "jinja2 (==2.10.1)", "markupsafe (==1.0)", "more-itertools (==4.2.0)", "nodeenv (==1.3.2)", "packaging (==17.1)", "pip-tools (==4.0.0)", "pluggy (==0.12.0)", "pre-commit (==1.18.2)", "py (==1.5.4)", "pygments (==2.2.0)", "pyparsing (==2.2.0)", "pytest-cov (==2.7.1)", "pytest (==5.0.1)", "pytz (==2018.5)", "pyyaml (==5.1)", "requests (==2.22.0)", "six (==1.11.0)", "snowballstemmer (==1.2.1)", "sphinx-autodoc-annotation (==1.0.post1)", "sphinx-rtd-theme (==0.4.3)", "sphinx (==2.2.0)", "sphinxcontrib-applehelp (==1.0.1)", "sphinxcontrib-devhelp (==1.0.1)", "sphinxcontrib-htmlhelp (==1.0.2)", "sphinxcontrib-jsmath (==1.0.1)", "sphinxcontrib-qthelp (==1.0.2)", "sphinxcontrib-serializinghtml (==1.1.3)", "toml (==0.9.4)", "urllib3 (==1.24.2)", "virtualenv (==16.0.0)", "wcwidth (==0.1.7)", "zipp (==0.5.1)"] +dev = ["alabaster (==0.7.11)", "aspy.yaml (==1.1.1)", "atomicwrites (==1.1.5)", "attrs (==18.1.0)", "babel (==2.6.0)", "bumpversion (==0.5.3)", "certifi (==2018.4.16)", "cfgv (==2.0.0)", "chardet (==3.0.4)", "click (==6.7)", "codecov (==2.0.15)", "coverage (==4.5.1)", "docutils (==0.14)", "hypothesis (==4.32.3)", "identify (==1.1.4)", "idna (==2.7)", "imagesize (==1.0.0)", "importlib-metadata (==0.18)", "jinja2 (==2.10.1)", "markupsafe (==1.0)", "more-itertools (==4.2.0)", "nodeenv (==1.3.2)", "packaging (==17.1)", "pip-tools (==4.0.0)", "pluggy (==0.12.0)", "pre-commit (==1.18.2)", "py (==1.5.4)", "pygments (==2.2.0)", "pyparsing (==2.2.0)", "pytest (==5.0.1)", "pytest-cov (==2.7.1)", "pytz (==2018.5)", "pyyaml (==5.1)", "requests (==2.22.0)", "six (==1.11.0)", "snowballstemmer (==1.2.1)", "sphinx (==2.2.0)", "sphinx-autodoc-annotation (==1.0.post1)", "sphinx-rtd-theme (==0.4.3)", "sphinxcontrib-applehelp (==1.0.1)", "sphinxcontrib-devhelp (==1.0.1)", "sphinxcontrib-htmlhelp (==1.0.2)", "sphinxcontrib-jsmath (==1.0.1)", "sphinxcontrib-qthelp (==1.0.2)", "sphinxcontrib-serializinghtml (==1.1.3)", "toml (==0.9.4)", "urllib3 (==1.24.2)", "virtualenv (==16.0.0)", "wcwidth (==0.1.7)", "zipp (==0.5.1)"] [[package]] name = "ntplib" @@ -745,6 +747,7 @@ python-versions = ">=3.6" [package.dependencies] llvmlite = ">=0.34.0.dev0,<0.35" numpy = ">=1.15" +setuptools = "*" [[package]] name = "numpy" @@ -871,7 +874,7 @@ packaging = "*" [package.extras] numpy = ["numpy (>=1.17)"] -test = ["pytest", "pytest-mpl", "pytest-cov", "pytest-subtests"] +test = ["pytest", "pytest-cov", "pytest-mpl", "pytest-subtests"] uncertainties = ["uncertainties (>=3.0)"] [[package]] @@ -915,12 +918,12 @@ toml = ">=0.10,<1.0" tomlkit = ">=0.7,<1.0" [package.extras] -tools = ["loguru (>=0.5,<1.0)", "joblib (>=1,<2)", "numpy (>=1.19,<2.0)", "pandas (>=1.2,<2.0)", "pint (>=0.17,<1.0)"] -all = ["loguru (>=0.5,<1.0)", "joblib (>=1,<2)", "numpy (>=1.19,<2.0)", "pandas (>=1.2,<2.0)", "pint (>=0.17,<1.0)", "matplotlib (>=3.3,<4.0)", "goatools (>=1,<2)", "requests (>=2,<3)", "uniprot (>=1.3,<2.0)", "psutil (>=5,<6)", "typer (>=0.4,<1.0)", "ipython (>=7.0)"] -plotting = ["numpy (>=1.19,<2.0)", "pandas (>=1.2,<2.0)", "matplotlib (>=3.3,<4.0)"] -biochem = ["numpy (>=1.19,<2.0)", "pandas (>=1.2,<2.0)", "pint (>=0.17,<1.0)", "goatools (>=1,<2)", "requests (>=2,<3)", "uniprot (>=1.3,<2.0)"] -notebooks = ["pandas (>=1.2,<2.0)", "ipython (>=7.0)"] +all = ["goatools (>=1,<2)", "ipython (>=7.0)", "joblib (>=1,<2)", "loguru (>=0.5,<1.0)", "matplotlib (>=3.3,<4.0)", "numpy (>=1.19,<2.0)", "pandas (>=1.2,<2.0)", "pint (>=0.17,<1.0)", "psutil (>=5,<6)", "requests (>=2,<3)", "typer (>=0.4,<1.0)", "uniprot (>=1.3,<2.0)"] +biochem = ["goatools (>=1,<2)", "numpy (>=1.19,<2.0)", "pandas (>=1.2,<2.0)", "pint (>=0.17,<1.0)", "requests (>=2,<3)", "uniprot (>=1.3,<2.0)"] misc = ["psutil (>=5,<6)", "typer (>=0.4,<1.0)"] +notebooks = ["ipython (>=7.0)", "pandas (>=1.2,<2.0)"] +plotting = ["matplotlib (>=3.3,<4.0)", "numpy (>=1.19,<2.0)", "pandas (>=1.2,<2.0)"] +tools = ["joblib (>=1,<2)", "loguru (>=0.5,<1.0)", "numpy (>=1.19,<2.0)", "pandas (>=1.2,<2.0)", "pint (>=0.17,<1.0)"] [[package]] name = "pre-commit" @@ -1149,7 +1152,7 @@ coverage = {version = ">=5.2.1", extras = ["toml"]} pytest = ">=4.6" [package.extras] -testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] +testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"] [[package]] name = "python-dateutil" @@ -1202,7 +1205,7 @@ urllib3 = ">=1.21.1,<1.27" [package.extras] socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<5)"] [[package]] name = "requests-cache" @@ -1220,14 +1223,14 @@ requests = ">=2.17,<3.0" url-normalize = ">=1.4,<2.0" [package.extras] +all = ["boto3 (<1.16)", "cattrs (>=1.7,<2.0)", "pymongo (>=3.0,<4.0)", "redis (>=3.0,<4.0)", "ujson (>=4.0)"] bson = ["bson (>=0.5)", "cattrs (>=1.7,<2.0)"] -all = ["cattrs (>=1.7,<2.0)", "ujson (>=4.0)", "boto3 (<1.16)", "pymongo (>=3.0,<4.0)", "redis (>=3.0,<4.0)"] +docs = ["Sphinx 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