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.gitignore
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# Compiled python modules.
*.pyc
# Setuptools distribution folder.
/dist/
# Python egg metadata, regenerated from source files by setuptools.
/*.egg-info
test.tar.gz
packages_ortho2align.svg
packages_ortho2align.png
classes_ortho2align.png
classes_ortho2align.svg
ortho2align.sublime-project
ortho2align.sublime-workspace
releases/osx-64/ortho2align-0.9-py39_0.tar.bz2
ortho2align/.ipynb_checkpoints/alignment-checkpoint.py
ortho2align/.ipynb_checkpoints/cli_scripts-checkpoint.py
ortho2align/.ipynb_checkpoints/fitting-checkpoint.py
ortho2align/.ipynb_checkpoints/genomicranges-checkpoint.py
docs/make.bat
docs/Makefile
docs/build/.buildinfo
docs/build/genindex.html
docs/build/index.html
docs/build/modules.html
docs/build/objects.inv
docs/build/ortho2align.html
docs/build/py-modindex.html
docs/build/search.html
docs/build/searchindex.js
docs/build/.doctrees/environment.pickle
docs/build/.doctrees/index.doctree
docs/build/.doctrees/modules.doctree
docs/build/.doctrees/ortho2align.doctree
docs/build/_sources/index.rst.txt
docs/build/_sources/modules.rst.txt
docs/build/_sources/ortho2align.rst.txt
docs/build/_static/basic.css
docs/build/_static/doctools.js
docs/build/_static/documentation_options.js
docs/build/_static/file.png
docs/build/_static/jquery-3.4.1.js
docs/build/_static/jquery.js
docs/build/_static/language_data.js
docs/build/_static/minus.png
docs/build/_static/plus.png
docs/build/_static/pygments.css
docs/build/_static/searchtools.js
docs/build/_static/underscore-1.3.1.js
docs/build/_static/underscore.js
docs/build/_static/css/badge_only.css
docs/build/_static/css/theme.css
docs/build/_static/fonts/fontawesome-webfont.eot
docs/build/_static/fonts/fontawesome-webfont.svg
docs/build/_static/fonts/fontawesome-webfont.ttf
docs/build/_static/fonts/fontawesome-webfont.woff
docs/build/_static/fonts/fontawesome-webfont.woff2
docs/build/_static/fonts/Lato/lato-bold.eot
docs/build/_static/fonts/Lato/lato-bold.ttf
docs/build/_static/fonts/Lato/lato-bold.woff
docs/build/_static/fonts/Lato/lato-bold.woff2
docs/build/_static/fonts/Lato/lato-bolditalic.eot
docs/build/_static/fonts/Lato/lato-bolditalic.ttf
docs/build/_static/fonts/Lato/lato-bolditalic.woff
docs/build/_static/fonts/Lato/lato-bolditalic.woff2
docs/build/_static/fonts/Lato/lato-italic.eot
docs/build/_static/fonts/Lato/lato-italic.ttf
docs/build/_static/fonts/Lato/lato-italic.woff
docs/build/_static/fonts/Lato/lato-italic.woff2
docs/build/_static/fonts/Lato/lato-regular.eot
docs/build/_static/fonts/Lato/lato-regular.ttf
docs/build/_static/fonts/Lato/lato-regular.woff
docs/build/_static/fonts/Lato/lato-regular.woff2
docs/build/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot
docs/build/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf
docs/build/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff
docs/build/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2
docs/build/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot
docs/build/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf
docs/build/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff
docs/build/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2
docs/build/_static/js/modernizr.min.js
docs/build/_static/js/theme.js
docs/build/doctrees/environment.pickle
docs/build/doctrees/index.doctree
docs/build/doctrees/modules.doctree
docs/build/doctrees/ortho2align.doctree
docs/build/html/.buildinfo
docs/build/html/genindex.html
docs/build/html/index.html
docs/build/html/modules.html
docs/build/html/objects.inv
docs/build/html/ortho2align.html
docs/build/html/py-modindex.html
docs/build/html/search.html
docs/build/html/searchindex.js
docs/build/html/_sources/index.rst.txt
docs/build/html/_sources/modules.rst.txt
docs/build/html/_sources/ortho2align.rst.txt
docs/build/html/_static/alabaster.css
docs/build/html/_static/basic.css
docs/build/html/_static/custom.css
docs/build/html/_static/doctools.js
docs/build/html/_static/documentation_options.js
docs/build/html/_static/file.png
docs/build/html/_static/jquery-3.4.1.js
docs/build/html/_static/jquery.js
docs/build/html/_static/language_data.js
docs/build/html/_static/minus.png
docs/build/html/_static/plus.png
docs/build/html/_static/pygments.css
docs/build/html/_static/searchtools.js
docs/build/html/_static/underscore-1.3.1.js
docs/build/html/_static/underscore.js
docs/build/html/_static/css/badge_only.css
docs/build/html/_static/css/theme.css
docs/build/html/_static/fonts/fontawesome-webfont.eot
docs/build/html/_static/fonts/fontawesome-webfont.svg
docs/build/html/_static/fonts/fontawesome-webfont.ttf
docs/build/html/_static/fonts/fontawesome-webfont.woff
docs/build/html/_static/fonts/fontawesome-webfont.woff2
docs/build/html/_static/fonts/Lato/lato-bold.eot
docs/build/html/_static/fonts/Lato/lato-bold.ttf
docs/build/html/_static/fonts/Lato/lato-bold.woff
docs/build/html/_static/fonts/Lato/lato-bold.woff2
docs/build/html/_static/fonts/Lato/lato-bolditalic.eot
docs/build/html/_static/fonts/Lato/lato-bolditalic.ttf
docs/build/html/_static/fonts/Lato/lato-bolditalic.woff
docs/build/html/_static/fonts/Lato/lato-bolditalic.woff2
docs/build/html/_static/fonts/Lato/lato-italic.eot
docs/build/html/_static/fonts/Lato/lato-italic.ttf
docs/build/html/_static/fonts/Lato/lato-italic.woff
docs/build/html/_static/fonts/Lato/lato-italic.woff2
docs/build/html/_static/fonts/Lato/lato-regular.eot
docs/build/html/_static/fonts/Lato/lato-regular.ttf
docs/build/html/_static/fonts/Lato/lato-regular.woff
docs/build/html/_static/fonts/Lato/lato-regular.woff2
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff
docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2
docs/build/html/_static/js/modernizr.min.js
docs/build/html/_static/js/theme.js
docs/source/conf.py
docs/source/index.rst
docs/source/modules.rst
docs/source/ortho2align.rst
.vscode/settings.json
.ipynb_checkpoints/setup-checkpoint.py
desktop.files.json