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main script seems to be broken? #1

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soichih opened this issue Jun 9, 2020 · 1 comment
Open

main script seems to be broken? #1

soichih opened this issue Jun 9, 2020 · 1 comment

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@soichih
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soichih commented Jun 9, 2020

+ singularity exec -e docker://brainlife/dipy:1.1.1 ./script.sh
usage: dipy_slr [-h] [--x0 str] [--rm_small_clusters int]
                [--qbx_thr [int [int ...]]] [--num_threads int]
                [--greater_than int] [--less_than int] [--nb_pts int]
                [--progressive] [--out_dir str] [--out_moved str]
                [--out_affine str] [--out_stat_centroids str]
                [--out_moving_centroids str] [--out_moved_centroids str]
                [--force] [--version] [--out_strat string] [--mix_names]
                [--log_level string] [--log_file string]
                static_files moving_files
dipy_slr: error: the following arguments are required: static_files, moving_files
/export/prod/5edf9ab5529ab42ca885daf9/5edf9ab6529ab4135c85dafc/script.sh: line 14: : command not found
@skoudoro
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skoudoro commented Jun 9, 2020

ok, got it!

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