-
Notifications
You must be signed in to change notification settings - Fork 1
/
ccp4_symlib_fem.hpp
311 lines (275 loc) · 4.4 KB
/
ccp4_symlib_fem.hpp
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
#ifndef CCP4IO_ADAPTBX_CCP4_SYMLIB_FEM_HPP
#define CCP4IO_ADAPTBX_CCP4_SYMLIB_FEM_HPP
#include <fem.hpp> // Fortran EMulation library of fable module
extern "C" {
typedef unsigned int ccp4_ftn_logical;
void
symfr2_(
const char* icol,
int const* i1,
int* ns,
float* rot, // [][4][4]
int icol_len);
void
msymlb_(
int const* ist,
int* lspgrp,
char* namspg,
char* nampg,
int* nsymp,
int* nsym,
float* rot, // [][4][4]
int namspg_len,
int nampg_len);
void
msymlb3_(
int const* ist,
int* lspgrp,
char* namspg_cif,
char* namspg_cifs,
char* nampg,
int* nsymp,
int* nsym,
float* rlsymmmatrx,
int namspg_cif_len,
int namspg_cifs_len,
int nampg_len);
void
symtr3_(
int const* nsm,
/*arr_cref<float, 3>*/ float const* rsm,
/*str_arr_ref<>*/ char* symchs,
int const* iprint,
int symchs_len);
void
asuset_(
const char* spgnam,
int const* numsgp,
char* pgname,
int const* msym,
float* rrsym, // [][4][4]
int* msymp,
int* mlaue,
ccp4_ftn_logical const* lprint,
int spgnam_len,
int pgname_len);
void
asuput_(
int const* ihkl,
int* jhkl,
int* isym);
void
asuget_(
int const* ihkl,
int* jhkl,
int const* isym);
void
centric_(
int const* nsm,
/*arr_cref<float, 3>*/ float const* rsm,
int const* iprint);
void
centr_(
int const* hkl,
int* ic);
void
epsln_(
int const* nsm,
int const* nsmp,
/*arr_cref<float, 3>*/ float const* rsm,
int const* iprint);
void
epslon_(
/*arr_cref<int>*/ int const* ih,
float* epsi,
int* isysab);
int
inasu_(
/*arr_cref<int>*/ int const* ihkl,
int const* nlaue);
void
setrsl_(
float const* a,
float const* b,
float const* c,
float const* alpha,
float const* beta,
float const* gamma);
void
sthlsq1_(
float* reso,
int const* ih,
int const* ik,
int const* il);
} // extern "C"
namespace ccp4_symlib_fem {
using namespace fem::major_types;
inline
void
symfr2(
str_cref icol,
int const& i1,
int& ns,
arr_ref<float, 3> rot)
{
symfr2_(
icol.elems(),
&i1,
&ns,
rot.begin(),
icol.len());
}
inline
void
msymlb(
int const& ist,
int& lspgrp,
str_ref namspg,
str_ref nampg,
int& nsymp,
int& nsym,
arr_ref<float, 3> rot)
{
msymlb_(
&ist, &lspgrp, namspg.elems(), nampg.elems(), &nsymp, &nsym, rot.begin(),
namspg.len(), nampg.len());
}
inline
void
msymlb3(
int const& ist,
int& lspgrp,
str_ref namspg_cif,
str_ref namspg_cifs,
str_ref nampg,
int& nsymp,
int& nsym,
arr_ref<float, 3> rlsymmmatrx)
{
msymlb3_(
&ist, &lspgrp, namspg_cif.elems(), namspg_cifs.elems(), nampg.elems(),
&nsymp, &nsym, rlsymmmatrx.begin(),
namspg_cif.len(), namspg_cifs.len(), nampg.len());
}
inline
void
symtr3(
int const& nsm,
arr_cref<float, 3> rsm,
str_arr_ref<> symchs,
int const& iprint)
{
symtr3_(&nsm, rsm.begin(), symchs.begin(), &iprint, symchs.len());
}
inline
void
asuset(
str_cref spgnam,
int const& numsgp,
str_ref pgname,
int const& msym,
arr_ref<float, 3> rrsym,
int& msymp,
int& mlaue,
bool const& lprint)
{
ccp4_ftn_logical lprint_ = lprint;
asuset_(
spgnam.elems(),
&numsgp,
pgname.elems(),
&msym,
rrsym.begin(),
&msymp,
&mlaue,
&lprint_,
spgnam.len(),
pgname.len());
}
inline
void
asuput(
arr_cref<int> ihkl,
arr_ref<int> jhkl,
int& isym)
{
asuput_(ihkl.begin(), jhkl.begin(), &isym);
}
inline
void
asuget(
arr_cref<int> ihkl,
arr_ref<int> jhkl,
int const& isym)
{
asuget_(ihkl.begin(), jhkl.begin(), &isym);
}
inline
void
centric(
int const& nsm,
arr_cref<float, 3> rsm,
int const& iprint)
{
centric_(&nsm, rsm.begin(), &iprint);
}
inline
void
centr(
arr_cref<int> hkl,
int& ic)
{
centr_(hkl.begin(), &ic);
}
inline
void
epsln(
int const& nsm,
int const& nsmp,
arr_cref<float, 3> rsm,
int const& iprint)
{
epsln_(&nsm, &nsmp, rsm.begin(), &iprint);
}
inline
void
epslon(
arr_cref<int> ih,
float& epsi,
int& isysab)
{
epslon_(ih.begin(), &epsi, &isysab);
}
inline
int
inasu(
arr_cref<int> ihkl,
int const& nlaue)
{
return inasu_(ihkl.begin(), &nlaue);
}
inline
void
setrsl(
float const& a,
float const& b,
float const& c,
float const& alpha,
float const& beta,
float const& gamma)
{
setrsl_(&a, &b, &c, &alpha, &beta, &gamma);
}
inline
float
sthlsq(
int const& ih,
int const& ik,
int const& il)
{
float reso;
sthlsq1_(&reso, &ih, &ik, &il);
return reso;
}
} // namespace ccp4_symlib_fem
#endif // GUARD