From c5d5c8c431ef56cd71f4a177766fae7af6a80e6c Mon Sep 17 00:00:00 2001 From: David Gault Date: Thu, 14 Dec 2023 15:58:02 +0000 Subject: [PATCH] Update table formatting in README --- README.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 07c285c..afd2528 100644 --- a/README.md +++ b/README.md @@ -51,10 +51,12 @@ BF_CP=target/OMEZarrReader-with-dependencies.jar showinf -nopix your.ome.zarr/.z ## Reader specific options -The OMEZarrReader has a number of reader specific options which can be used to customise the reader behaviour. This options can be used in the same manner as the reader options for Bio-Formats outlined [here](https://bio-formats.readthedocs.io/en/latest/formats/options.html#usage). The list of available options are below: +The OMEZarrReader has a number of reader specific options which can be used to customise the reader behaviour. This options can be used in the same manner as the reader options for Bio-Formats outlined [here](https://bio-formats.readthedocs.io/en/latest/formats/options.html#usage). + +The list of available options are below: | Option | Default | Description | -| --- | --- | +| --- | --- | --- | | `omezarr.quick_read` | false | Improves the read performance by limiting the number of files that are parsed. This assumes that the shape and resolution count of all images in a plate remains constant | | `omezarr.save_annotations` | false | Determines if all the Zarr JSON metadata should be stored as XML annotations in the OME Model | | `omezarr.list_pixels` | false | Used to decide if getUsedFiles should list all of the pixel chunks |