From c0a835242373680c8131a7edb6687cceb0a2d077 Mon Sep 17 00:00:00 2001
From: David Gault <d.gault@dundee.ac.uk>
Date: Wed, 1 May 2024 17:18:40 +0100
Subject: [PATCH] Remove unused openPlane and openZarr

---
 src/loci/formats/in/ZarrReader.java | 77 -----------------------------
 1 file changed, 77 deletions(-)

diff --git a/src/loci/formats/in/ZarrReader.java b/src/loci/formats/in/ZarrReader.java
index 7ff44a2..7814144 100644
--- a/src/loci/formats/in/ZarrReader.java
+++ b/src/loci/formats/in/ZarrReader.java
@@ -1242,83 +1242,6 @@ private void reloadOptionsFile(String id) {
       }
     }
   }
-  
-  public static byte[] openPlane(String path, byte[] buf) throws FormatException, IOException {
-    String rootPath = path.substring(0, path.indexOf(".zarr") + 5);
-    String altPath = loadAltStoreOption(rootPath);
-    if (altPath == null) altPath = rootPath;
-    ZarrService service = new JZarrServiceImpl(altPath);
-    openZarr(path, service);
-    int [] shape = {1, 1, 1, 1, 1};
-    int [] zarrShape = service.getShape();
-    shape[4] = zarrShape[zarrShape.length - 1];
-    shape[3] = zarrShape[zarrShape.length - 2];
-    int zarrArrayShapeSize = zarrShape.length;
-    if (zarrArrayShapeSize < 5) {
-      shape = getOriginalShape(shape, zarrArrayShapeSize);
-    }
-    int [] offsets = {0, 0, 0, 0, 0};
-    Object image = service.readBytes(shape, offsets);
-    int w = shape[4];
-    int h = shape[3];
-    boolean little = service.isLittleEndian();
-    int bpp = FormatTools.getBytesPerPixel(service.getPixelType());
-    if (image instanceof byte[]) {
-      byte [] data = (byte []) image;
-      for (int i = 0; i < data.length; i++) {
-        DataTools.unpackBytes(data[i], buf, i, 1, little);
-      }
-    }
-    else if (image instanceof short[]) {
-      short[] data = (short[]) image;
-      for (int row = 0; row < h; row++) {
-        int base = row * w * bpp;
-        for (int i = 0; i < w; i++) {
-          DataTools.unpackBytes(data[(row * w) + i], buf, base + 2 * i, 2, little);
-        }
-      }
-    }
-    else if (image instanceof int[]) {
-      int[] data = (int[]) image;
-      for (int row = 0; row < h; row++) {
-        int base = row * w * bpp;
-        for (int i = 0; i < w; i++) {
-          DataTools.unpackBytes(data[(row * w) + i], buf, base + 4 * i, 4, little);
-        }
-      }
-    }
-    else if (image instanceof float[]) {
-      float[] data = (float[]) image;
-      for (int row = 0; row < h; row++) {
-        int base = row * w * bpp;
-        for (int i = 0; i < w; i++) {
-          int value = Float.floatToIntBits(data[(row * w) + i]);
-          DataTools.unpackBytes(value, buf, base + 4 * i, 4, little);
-        }
-      }
-    }
-    else if (image instanceof double[]) {
-      double[] data = (double[]) image;
-      for (int row = 0; row < h; row++) {
-        int base = row * w * bpp;
-        for (int i = 0; i < w; i++) {
-          long value = Double.doubleToLongBits(data[(row * w) + i]);
-          DataTools.unpackBytes(value, buf, base + 8 * i, 8, little);
-        }
-      }
-    }
-    return buf;
-  }
-  
-  private static void openZarr(String path, ZarrService service) {
-    try {
-      String canonicalPath = new Location(path).getCanonicalPath();
-      LOGGER.debug("Opening zarr statically at path: {}", canonicalPath);
-      service.open(canonicalPath);
-    } catch (IOException | FormatException e) {
-      e.printStackTrace();
-    }
-  }
 
   /**
    * Reloads the bfoptions file statically, only reading the value for the alterntiave file store