literatura.bib

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@article{wang1994complexity,
  title={On the complexity of multiple sequence alignment},
  author={Wang, Lusheng and Jiang, Tao},
  journal={Journal of computational biology},
  volume={1},
  number={4},
  pages={337--348},
  year={1994}
}

@article{kubo,
  title={Alignment of Nanopore Sequencing Squiggles},
  author={Havelka, Jakub},
  year={2017}
}

@article{muller2007dynamic,
  title={Dynamic time warping},
  author={M{\"u}ller, Meinard},
  journal={Information retrieval for music and motion},
  pages={69--84},
  year={2007},
  publisher={Springer}
}

@article{oxford,
  title={A first look at the Oxford Nanopore MinION sequencer},
  author={Mikheyev, Alexander S and Tin, Mandy MY},
  journal={Molecular ecology resources},
  volume={14},
  number={6},
  pages={1097--1102},
  year={2014},
  publisher={Wiley Online Library}
}

@Article{kmersimage,
AUTHOR = { de Lannoy, C and de Ridder, D and Risse, J},
TITLE = {The long reads ahead: de novo genome assembly using the MinION [version 2; referees: 2 approved]
},
JOURNAL = {F1000Research},
VOLUME = {6},
YEAR = {2017},
NUMBER = {1083},
DOI = {10.12688/f1000research.12012.2}
}


@article{needleman,
  title={A general method applicable to the search for similarities in the amino acid sequence of two proteins},
  author={Needleman, Saul B and Wunsch, Christian D},
  journal={Journal of molecular biology},
  volume={48},
  number={3},
  pages={443--453},
  year={1970},
  publisher={Elsevier}
}

@article{band,
  title={Dynamic programming algorithm optimization for spoken word recognition},
  author={Sakoe, Hiroaki and Chiba, Seibi},
  journal={IEEE transactions on acoustics, speech, and signal processing},
  volume={26},
  number={1},
  pages={43--49},
  year={1978},
  publisher={IEEE}
}

@article{data,
  title={Nanopore sequencing and assembly of a human genome with ultra-long reads},
  author={Jain, Miten and Koren, Sergey and Miga, Karen H and Quick, Josh and Rand, Arthur C and Sasani, Thomas A and Tyson, John R and Beggs, Andrew D and Dilthey, Alexander T and Fiddes, Ian T and others},
  journal={Nature biotechnology},
  year={2018},
  publisher={Nature Publishing Group}
}

@incollection{progressive,
  title={Multiple sequence alignment},
  author={Higgins, Des},
  booktitle={Genetic Databases},
  pages={165--183},
  year={1997},
  publisher={Elsevier}
}

@book{baum,
  title={Understanding bioinformatics},
  author={Zvelebil, Marketa J and Baum, Jeremy O},
  pages={196--211},
  year={2007},
  publisher={Garland Science}
}

@article{iterative,
  title={Evaluation of iterative alignment algorithms for multiple alignment},
  author={Wallace, Iain M and Orla, O'Sullivan and Higgins, Desmond G},
  journal={Bioinformatics},
  volume={21},
  number={8},
  pages={1408--1414},
  year={2004},
  publisher={Oxford University Press}
}