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add ias2regdef()#46

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Commits on Sep 28, 2017

• correct inst/extdata/story0*-regdef.txt

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Commits on Oct 5, 2017

• add ias2regdef() & roxygen block template

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• ias2regdef(): add read from ias file code and documentation

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• ias2regdef(): add parameters and defult values

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• ias2regdef(): add yaml block based on reg2regdef

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• ias2regdef(): add comment for read in ias file

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• ias2regdef(): add reg.sep parameter

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• ias2regdef(): add regdef block based on reg2regdef

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• ias2regdef(): loop over multi-lines of ias

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• ias2regdef(): specify no quotes around text in ias files

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• correct inst/extdata/story0*-regdef.txt

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• ias2regdef(): calc chrW based on 1st line of text

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• ias2regdef(): replace user-spec reg.sep with "\t"

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• ias2regdef(): change parameter ias.file to fname

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• ias2regdef(): chrH is half of the diff b/t y1 & y2

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• ias2regdef(): add argument baseline.offset

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• ias2regdef(): min diff b/t region widths as chrW

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Commits on Oct 12, 2017

• ias2regdef(): add option for writing regdef file

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• ias2regdef(): error msg if area type != RECTANGLE

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• ias2redgef(): add warnings re interest area order

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Commits on Oct 19, 2017

• fix typo for regdef2ias documentation

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• add/update ias2regdef() documentation

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• ias2regdef(): move arg check for write.regdef to top

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Commits on Nov 2, 2017

• ias2regdef(): fix regex for replacing file name

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