From fb23909259e6710abad08ab6b25e6422d5c137ac Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Thu, 2 Jun 2022 10:51:28 -0500 Subject: [PATCH 1/9] Add YouTube tutorial link --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index caf09c0..497210c 100644 --- a/README.md +++ b/README.md @@ -47,6 +47,10 @@ assembled together to form a fully functional workflow. workflow ([03-process.ipynb](notebooks/03-process.ipynb)) and explore the data ([05-explore.ipynb](notebooks/05-explore.ipynb)). ++ See our YouTube tutorial for a walkthrough of the schemas and functions: + + [![YouTube tutorial](https://img.youtube.com/vi/gFLn0GB1L30/0.jpg)](https://www.youtube.com/watch?v=gFLn0GB1L30) + ## Citation + If your work uses DataJoint and DataJoint Elements, please cite the respective Research Resource Identifiers (RRIDs) and manuscripts. From d9c58d0edb52935e64529ce5b9a62cc0068c9f24 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Thu, 2 Jun 2022 10:52:10 -0500 Subject: [PATCH 2/9] Update version and changelog --- CHANGELOG.md | 20 +++++++++++++++----- workflow_calcium_imaging/version.py | 2 +- 2 files changed, 16 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e3ef484..6ec961c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,11 +3,21 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention. +## 0.1.0 - 2022-06-02 + ++ Add - Suite2p triggering pytest ++ Update - Docker and Compose files ++ Add - GitHub issue templates ++ Add - Paired jupytext python scripts ++ Add - Analysis schema for event-aligned calcium activity ++ Add - Citation section to README ++ Add - YouTube tutorial link to README + ## 0.1.0a2 - 2022-01-24 -### Updated -+ Changed version to reflect release phase + ++ Update - Change version to reflect release phase ## 0.1.1 - 2021-03-26 -### Added -+ Added version -+ Added containerization for pytests \ No newline at end of file + ++ Add - Version ++ Add - Containerization for pytests diff --git a/workflow_calcium_imaging/version.py b/workflow_calcium_imaging/version.py index e934805..2865d60 100644 --- a/workflow_calcium_imaging/version.py +++ b/workflow_calcium_imaging/version.py @@ -3,4 +3,4 @@ Update the Docker image tag in `docker-compose-test.yaml` and `docker-compose-dev.yaml` to match """ -__version__ = '0.1.0a2' \ No newline at end of file +__version__ = '0.1.0' \ No newline at end of file From 11cc4baaaa83989ba4ecfaa6cb621d51d1551743 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Thu, 2 Jun 2022 11:37:32 -0500 Subject: [PATCH 3/9] Update requirements --- requirements.txt | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/requirements.txt b/requirements.txt index dd5a884..aeffb29 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,9 +1,9 @@ datajoint>=0.13.0 -element-calcium-imaging==0.1.0b0 -element-lab==0.1.0b0 -element-animal==0.1.0b0 -element-session==0.1.0b0 +element-calcium-imaging>=0.1.0b0 +element-lab>=0.1.0b0 +element-animal>=0.1.0b0 +element-session>=0.1.0b0 element-event @ git+https://github.com/datajoint/element-event.git element-interface @ git+https://github.com/datajoint/element-interface.git -ipykernel==6.0.1 -jupytext==1.13.7 \ No newline at end of file +ipykernel>=6.0.1 +jupytext>=1.13.7 \ No newline at end of file From 828d6d4d7d480f1c6f617739f3c5a06c9964d529 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Thu, 2 Jun 2022 11:38:21 -0500 Subject: [PATCH 4/9] Update requirements --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 6ec961c..52299b4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -12,6 +12,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and + Add - Analysis schema for event-aligned calcium activity + Add - Citation section to README + Add - YouTube tutorial link to README ++ Update - Requirements ## 0.1.0a2 - 2022-01-24 From e572ebdee6afea0a7a5d6048d879add47e1fa469 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Fri, 3 Jun 2022 14:16:16 -0500 Subject: [PATCH 5/9] Update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 52299b4..cee95c1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and + Add - Citation section to README + Add - YouTube tutorial link to README + Update - Requirements ++ Add - Adopt black formatting into code base ## 0.1.0a2 - 2022-01-24 From fdd99cf8b1675267bba1d7ad9ffe2fdb4624bba2 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Fri, 3 Jun 2022 14:21:43 -0500 Subject: [PATCH 6/9] Update syntax --- workflow_calcium_imaging/version.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow_calcium_imaging/version.py b/workflow_calcium_imaging/version.py index 2bf4052..a81f30a 100644 --- a/workflow_calcium_imaging/version.py +++ b/workflow_calcium_imaging/version.py @@ -3,4 +3,4 @@ Update the Docker image tag in `docker-compose-test.yaml` and `docker-compose-dev.yaml` to match """ -__version__ = '0.1.0' +__version__ = "0.1.0" From eff8963d676c405afad4181db08cb8595829c1a4 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Fri, 3 Jun 2022 14:24:18 -0500 Subject: [PATCH 7/9] Update date --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index cee95c1..23563a4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention. -## 0.1.0 - 2022-06-02 +## 0.1.0 - 2022-06-03 + Add - Suite2p triggering pytest + Update - Docker and Compose files From aa22fe379f3113ef6e527de7234fe22ace0fd284 Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Wed, 29 Jun 2022 11:24:16 -0500 Subject: [PATCH 8/9] Update requirements --- requirements.txt | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/requirements.txt b/requirements.txt index aeffb29..412b8f4 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,8 +1,8 @@ datajoint>=0.13.0 -element-calcium-imaging>=0.1.0b0 -element-lab>=0.1.0b0 -element-animal>=0.1.0b0 -element-session>=0.1.0b0 +element-calcium-imaging>=0.1.0 +element-lab>=0.1.1 +element-animal>=0.1.2 +element-session>=0.1.2 element-event @ git+https://github.com/datajoint/element-event.git element-interface @ git+https://github.com/datajoint/element-interface.git ipykernel>=6.0.1 From 56e1d7d59cdd1a73390ccd951b49f935cd933b5f Mon Sep 17 00:00:00 2001 From: Kabilar Gunalan Date: Wed, 29 Jun 2022 11:25:27 -0500 Subject: [PATCH 9/9] Update date --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 23563a4..7b6cafe 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention. -## 0.1.0 - 2022-06-03 +## 0.1.0 - 2022-06-29 + Add - Suite2p triggering pytest + Update - Docker and Compose files