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Conversion to NWB problem #25
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hello @ttngu207 and @dimitri-yatsenko, I'm running into another issue with the conversion to NWB. I think this might be related to different versions. Great study by the way! 😄
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Running into an issue with converting NWB files.
I am working with Mac OSX Ventura for what it is worth. Working in the terminal and in the caiman environment.
Followed the instructions to download and unpack the Najafi 2018 dataset, which was done successfully. I'm running into issues with converting to nwb. My pynwb version is 2.3.2.
When running
% python3 scripts/convert_to_nwb.py
I run into the following error:
0%| | 0/135 [00:00<?, ?it/s]/Users/js0403/anaconda3/envs/caiman/lib/python3.10/site-packages/numpy/core/numeric.py:407: RuntimeWarning: invalid value encountered in cast
multiarray.copyto(res, fill_value, casting='unsafe')
/Users/js0403/najafi-2018-nwb/scripts/convert_to_nwb.py:156: RuntimeWarning: invalid value encountered in cast
neuron_type[bad_roi_mask] = moremat['inhibitRois_pix']
18%|███████▍ | 24/135 [03:45<22:53, 12.38s/it]Error adding roi_response_series: stimOffAl
ErrorMsg: 'stimOffAl'
19%|███████▊ | 25/135 [04:00<24:18, 13.26s/it]Error adding roi_response_series: stimOffAl
ErrorMsg: 'stimOffAl'
19%|████████ | 26/135 [04:08<21:24, 11.79s/it]Error adding roi_response_series: stimOffAl
ErrorMsg: 'stimOffAl'
20%|████████▍ | 27/135 [04:25<23:52, 13.26s/it]Error adding roi_response_series: stimOffAl
ErrorMsg: 'stimOffAl'
Each file is processed until it runs into 'stimOffAI' after which, the progress terminates.
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