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ehrbase_routines.py
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ehrbase_routines.py
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import requests
from url_normalize import url_normalize
from lxml import etree
import json
from json_tools import diff
import string,random
import sys
from flask import request
from myutils import myutils
from myutils import structuredMarand2EHRBase
from flask import current_app
import uuid
def init_ehrbase():
current_app.logger.debug('inside init_ehrbase')
client=requests.Session()
return client
def createPageFromBase4templatelist(client,auth,hostname,port,username,password,basefile,targetfile):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
current_app.logger.debug('inside createPageFromBase4templatelist')
client.auth = (username,password)
myresp={}
myurl=url_normalize(EHR_SERVER_BASE_URL + 'definition/template/adl1.4')
response=client.get(myurl,params={'format': 'JSON'},headers={'Authorization':auth,'Content-Type':'application/XML'})
current_app.logger.debug('Get list templates')
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
if(response.status_code<210 and response.status_code>199):
myresp['text']=response.text
myresp['status']='success'
myresp['headers']=response.headers
myresp['status_code']= response.status_code
results=json.loads(response.text)
templates=[r['template_id'] for r in results]
if(len(templates)==0):
templates=['No templates available']
myresp['templates']=templates
drmstart=['<select class="form-select" type="text" id="tname" name="tname">']
drmoptions=['<option>'+t+'</option>' for t in templates]
drmstop=['</select>']
drm=[]
drm=drmstart+drmoptions+drmstop
drmstring='\n'.join(drm)
with open('./templates/'+basefile,'r') as ff:
lines=ff.readlines()
with open('./templates/'+targetfile,'w') as fg:
docopy=True
for line in lines:
if('<!--dropdownmenustart-->' in line):
docopy=False
fg.write(drmstring)
elif('<!--dropdownmenustop-->' in line):
docopy=True
else:
if(docopy):
fg.write(line)
return myresp
else:
myresp['text']=response.text
myresp['status']='failure'
myresp['headers']=response.headers
myresp['status_code']= response.status_code
current_app.logger.warning("GET templates for createPageFromBase4templatelist failure")
return myresp
def gettemp(client,auth,hostname,port,username,password,tformat,template):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
client.auth = (username,password)
myresp={}
current_app.logger.debug('inside gettemp')
current_app.logger.info(f'Get Template: template={template} format={tformat}')
if(tformat=="OPT"):
myurl=url_normalize(EHR_SERVER_BASE_URL + 'definition/template/adl1.4/'+template)
response=client.get(myurl,params={'format': 'JSON'},headers={'Authorization':auth,'Content-Type':'application/XML'})
else: #format webtemplate
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/ecis/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/ecis/v1/"
myurl=url_normalize(EHR_SERVER_BASE_URL+'template/'+template)
current_app.logger.debug('myurl')
current_app.logger.debug(myurl)
response=client.get(myurl,params={'format': 'JSON'},headers={'Authorization':auth,'Content-Type':'application/openehr.wt+json'})
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
if(response.status_code<210 and response.status_code>199):
if(tformat=="OPT"):
root = etree.fromstring(response.text)
responsexml = etree.tostring(root, encoding='unicode', method='xml', pretty_print=True)
responsexml=responsexml.replace("#","%23")
myresp['template']=responsexml
else:
nohash=response.text.replace("#","%23")
myresp['template']=json.dumps(json.loads(nohash),sort_keys=True, indent=1, separators=(',', ': '))
myresp['status']='success'
current_app.logger.info(f'GET success for template={template} in format={tformat}')
else:
myresp['status']='failure'
current_app.logger.warning(f'GET Template failure for template={template} in format={tformat}')
myresp['text']=response.text
myresp['headers']=response.headers
myresp['status_code']=response.status_code
return myresp
def listtemp(client,auth,hostname,port,username,password):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
client.auth = (username,password)
myresp={}
current_app.logger.debug('inside listtemp')
myurl=url_normalize(EHR_SERVER_BASE_URL + 'definition/template/adl1.4')
response=client.get(myurl,params={'format': 'JSON'},headers={'Authorization':auth,'Content-Type':'application/json'})
current_app.logger.debug('Get list templates')
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
current_app.logger.info(f'GET success for template list')
myresp['json']=response.text
else:
myresp['status']='failure'
current_app.logger.warning(f'GET Template failure for template list')
myresp['text']=response.text
myresp['headers']=response.headers
myresp['status_code']= response.status_code
return myresp
def posttemp(client,auth,hostname,port,username,password,uploaded_template):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
current_app.logger.debug('inside posttemp')
client.auth = (username,password)
root=etree.fromstring(uploaded_template)
telement=root.find("{http://schemas.openehr.org/v1}template_id")
template_name=""
if telement is not None:
for i in telement:
template_name=i.text
current_app.logger.info(f'POST Template : template={template_name}')
else:
current_app.logger.info('POST Template')
myurl=url_normalize(EHR_SERVER_BASE_URL + 'definition/template/adl1.4/')
response=client.post(myurl,params={'format': 'XML'},headers={'Authorization':auth,'Content-Type':'application/XML'},
data=etree.tostring(root))
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp['headers']=response.headers
myresp['status_code']=response.status_code
myresp['text']=response.text
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
current_app.logger.info(f'Template POST template={template_name} success')
else:
myresp['status']='failure'
current_app.logger.warning(f'POST Template failure for template={template_name}')
return myresp
def updatetemp(client,adauth,hostname,port,adusername,adpassword,uploaded_template,templateid):
current_app.logger.debug('inside updatetemp')
current_app.logger.info(f'Updating template: template={templateid}')
if hostname.startswith('http'):
EHR_SERVER_URL = hostname+":"+port+"/ehrbase/"
else:
EHR_SERVER_URL = "http://"+hostname+":"+port+"/ehrbase/"
client.auth = (adusername,adpassword)
root=etree.fromstring(uploaded_template)
myurl=url_normalize(EHR_SERVER_URL + 'rest/admin/template/'+templateid)
response=client.put(myurl,params={'format': 'XML'},headers={'Authorization':adauth,'Content-Type':'application/xml',
'prefer':'return=minimal','accept':'application/xml' },
data=etree.tostring(root))
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp['headers']=response.headers
myresp['status_code']=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
current_app.logger.info(f'Update PUT success for template={templateid}')
return myresp
else:
myresp['status']='failure'
current_app.logger.warning(f'Update Template PUT failure for template={templateid}')
return myresp
def deltemp(client,adauth,hostname,port,adusername,adpassword,templateid):
current_app.logger.debug('inside deletetemp')
current_app.logger.info(f'Deleting template: template={templateid}')
if hostname.startswith('http'):
EHR_SERVER_URL = hostname+":"+port+"/ehrbase/"
else:
EHR_SERVER_URL = "http://"+hostname+":"+port+"/ehrbase/"
client.auth = (adusername,adpassword)
myurl=url_normalize(EHR_SERVER_URL + 'rest/admin/template/'+templateid)
response=client.delete(myurl,headers={'Authorization':adauth })
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp['headers']=response.headers
myresp['status_code']=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
current_app.logger.info(f'Delete Template success for template={templateid}')
return myresp
else:
myresp['status']='failure'
current_app.logger.warning(f'Delete Template failure for template={templateid}')
return myresp
def delalltemp(client,adauth,hostname,port,adusername,adpassword):
current_app.logger.debug('inside deletealltemp')
current_app.logger.info(f'Deleting all template')
if hostname.startswith('http'):
EHR_SERVER_URL = hostname+":"+port+"/ehrbase/"
else:
EHR_SERVER_URL = "http://"+hostname+":"+port+"/ehrbase/"
client.auth = (adusername,adpassword)
myurl=url_normalize(EHR_SERVER_URL + 'rest/admin/template/all')
response=client.delete(myurl,headers={'Authorization':adauth })
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp['headers']=response.headers
myresp['status_code']=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
myresp['deleted']=json.loads(response.text)['deleted']
current_app.logger.info(f'Delete all Templates success')
return myresp
else:
if response.status_code==422:
#"Cannot delete template BBMRI-ERIC_Colorectal_Cancer_Cohort_Report since the following compositions are still using it +------------------------------------+\n|composition_id |\n+------------------------------------+\n|2a9e5aca-c26e-4787-88f9-21a1d879902c|\n|45860049-01c6-4707-a183-7437b03c50a3|\n|a7bbd870-ab6e-4919-9b1a-8f08b5bd9814|\n+------------------------------------+\n"
errorjson=json.loads(response.text)
message=errorjson['message']
msplit=message.split('+')
errorjson.pop('message', None)
errorjson['message_line1']=msplit[0]
errorjson['message_line2']=msplit[2].split('|')[1].rstrip()+':'+msplit[4].replace('\n','').replace('||',',').replace('|','')
myresp['error422']=json.dumps(errorjson,sort_keys=True, indent=1, separators=(',', ': '))
myresp['status']='failure'
current_app.logger.warning(f'Delete all Templates failure')
return myresp
def createehrid(client,auth,hostname,port,username,password,eid):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
client.auth = (username,password)
current_app.logger.debug('inside createehrid')
withehrid=True
if(eid==""):
withehrid=False
if(not withehrid):
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr')
current_app.logger.info("Create ehr without ehrid")
response=client.post(myurl, params={},headers={'Authorization':auth, \
'Content-Type':'application/JSON','Accept': 'application/json','Prefer': 'return={representation|minimal}'})
else:
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid)
current_app.logger.info(f"Create ehr with ehrid: ehrid={eid}")
response=client.put(myurl, params={},headers={'Authorization':auth,'Content-Type':'application/JSON','Accept': 'application/json','Prefer': 'return={representation|minimal}'})
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
if(response.status_code<210 and response.status_code>199):
myresp['status']="success"
if(withehrid):
ehrid=response.headers['ETag'].replace('"','')
current_app.logger.info(f'EHR creation PUT success with given ehrid={eid}')
if(eid != ehrid):
current_app.logger.debug('ehrid given and obtained do not match')
else:
ehrid=response.headers['ETag'].replace('"','')
current_app.logger.info(f'EHR creation POST success with ehrid={ehrid}')
myresp["ehrid"]=ehrid
myresp['text']=response.text
else:
myresp['status']="failure"
myresp['text']=response.text
myresp['headers']=response.headers
if(withehrid):
ministr=' PUT with ehrid='+eid
else:
ministr=" POST"
current_app.logger.warning('EHR creation"+ministr+" failure')
myresp['status_code']=response.status_code
current_app.logger.debug(myresp)
return myresp
def createehrsub(client,auth,hostname,port,username,password,sid,sna,eid):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
current_app.logger.debug('inside createehrsub')
client.auth = (username,password)
body1='''
{
"_type" : "EHR_STATUS",
"name" : {
"_type" : "DV_TEXT",
"value" : "EHR Status"
},
"subject" : {
"_type" : "PARTY_SELF",
"external_ref" : {
"_type" : "PARTY_REF",
'''
body2=f' "namespace" : "{sna}",'
body3='''
"type" : "PERSON",
"id" : {
"_type" : "GENERIC_ID",
'''
body4=f' "value" : "{sid}",\n'
body5='''
"scheme" : "id_scheme"
}
}
},
"archetype_node_id" : "openEHR-EHR-EHR_STATUS.generic.v1",
"is_modifiable" : true,
"is_queryable" : true
}
'''
body=body1+body2+body3+body4+body5
current_app.logger.debug(body)
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr')
withehrid=True
if(eid==""):
withehrid=False
if(not withehrid):
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr')
response=client.post(myurl, params={},headers={'Authorization':auth, \
'Content-Type':'application/JSON','Accept': 'application/json','Prefer': 'return={representation|minimal}'},
data=body)
else:
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid)
response=client.put(myurl, params={},headers={'Authorization':auth, \
'Content-Type':'application/JSON','Accept': 'application/json','Prefer': 'return={representation|minimal}'},
data=body)
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
if(response.status_code<210 and response.status_code>199):
myresp['status']="success"
if(withehrid):
ehrid=response.headers['ETag'].replace('"','')
current_app.logger.info(f'EHR creation PUT success with given ehrid={eid}')
if(eid != ehrid):
current_app.logger.debug('ehrid given and obtain do not match')
else:
ehrid=response.headers['ETag'].replace('"','')
current_app.logger.info(f'EHR creation POST success with ehrid={ehrid}')
myresp["ehrid"]=ehrid
myresp['text']=response.text
else:
myresp['status']="failure"
myresp['headers']=response.headers
myresp['text']=response.text
if(withehrid):
ministr=' PUT with ehrid='+eid
else:
ministr=" POST"
current_app.logger.warning('EHR creation"+ministr+" failure')
myresp['status_code']=response.status_code
return myresp
def getehrid(client,auth,hostname,port,username,password,ehrid):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
current_app.logger.debug('inside getehrid')
client.auth = (username,password)
current_app.logger.debug("launched getehr")
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+ehrid)
response=client.get(myurl, params={},headers={'Authorization':auth, \
'Content-Type':'application/JSON','Accept': 'application/json','Prefer': 'return={representation|minimal}'})
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
if(response.status_code<210 and response.status_code>199):
myresp['status']="success"
myresp["ehrid"]=ehrid
myresp['text']=response.text
current_app.logger.info(f"EHR GET success for ehrid={ehrid}")
else:
myresp['status']="failure"
myresp['text']=response.text
myresp['headers']=response.headers
current_app.logger.warning(f"EHR GET failure for ehrid={ehrid}")
myresp['status_code']=response.status_code
return myresp
def delehrid(client,adauth,hostname,port,adusername,adpassword,ehrid):
current_app.logger.debug('inside delehrid')
current_app.logger.info(f'Deleting ehr: ehrid={ehrid}')
if hostname.startswith('http'):
EHR_SERVER_URL = hostname+":"+port+"/ehrbase/"
else:
EHR_SERVER_URL = "http://"+hostname+":"+port+"/ehrbase/"
client.auth = (adusername,adpassword)
myurl=url_normalize(EHR_SERVER_URL + 'rest/admin/ehr/'+ehrid)
response=client.delete(myurl,headers={'Authorization':adauth })
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp['headers']=response.headers
myresp['status_code']=response.status_code
myresp['text']=response.text
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
myresp['ehrid']=ehrid
current_app.logger.info(f'Delete ehr success for template={ehrid}')
return myresp
else:
myresp['status']='failure'
current_app.logger.warning(f'Delete ehr failure for template={ehrid}')
return myresp
def getehrsub(client,auth,hostname,port,username,password,sid,sna):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
current_app.logger.debug('inside getehrsub')
client.auth = (username,password)
current_app.logger.debug(f'sid={sid} sna={sna}')
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr')
response=client.get(myurl, params={'subject_id':sid,'subject_namespace':sna},headers={'Authorization':auth, \
'Content-Type':'application/JSON','Accept': 'application/json','Prefer': 'return={representation|minimal}'})
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
if(response.status_code<210 and response.status_code>199):
myresp['status']="success"
# ehrid=response.headers['Location'].split("ehr/")[3]
ehrid=response.headers['Location'].split('/')[-1]
myresp["ehrid"]=ehrid
myresp['text']=response.text
current_app.logger.info(f"EHR GET success for subject_id={sid} subject_namespace={sna} => ehrid={ehrid}")
else:
myresp['status']="failure"
myresp['text']=response.text
myresp['headers']=response.headers
current_app.logger.warning(f"EHR GET failure for subject_id={sid} subject_namespace={sna}")
myresp['status_code']=response.status_code
return myresp
def postehrstatus(client,auth,hostname,port,username,password,uploaded_ehrstatus):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
current_app.logger.debug('inside postehrstatus')
client.auth = (username,password)
ehrs = json.loads(uploaded_ehrstatus)
ehrsjson=json.dumps(ehrs)
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr')
response=client.post(myurl,headers={'Authorization':auth,\
'Content-Type':'application/json','Prefer': 'return=representation'},
data=ehrsjson)
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp['headers']=response.headers
myresp['status_code']=response.status_code
myresp['text']=response.text
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
current_app.logger.info(f'EHR creation.EHR_STATUS POST success')
else:
myresp['status']='failure'
current_app.logger.warning(f'EHR creation.EHR_STATUS POST FAILURE')
return myresp
def getehrstatus(client,auth,hostname,port,username,password,eid,outtype,vat,vid):
client.auth = (username,password)
current_app.logger.debug('inside getehrstatus')
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
if outtype=='VAT':
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/ehr_status')
if vat=="":
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json'} )
else:
response = client.get(myurl,params={'version_at_time':vat},headers={'Authorization':auth,'Content-Type':'application/json'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
current_app.logger.info(f"GET EHR_STATUS success for ehrid={eid} outtype={outtype}")
else:
myresp["status"]="failure"
current_app.logger.info(f"GET EHR_STATUS failure for ehrid={eid} outtype={outtype}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
else: #outtype='VBV'
if vid=='':
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/ehr_status/')
else:
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/ehr_status/'+vid)
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
current_app.logger.info(f"GET EHR_STATUS success for ehrid={eid} outtype={outtype}")
else:
myresp["status"]="failure"
current_app.logger.info(f"GET EHR_STATUS failure for ehrid={eid} outtype={outtype}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
def updateehrstatus(client,auth,hostname,port,username,password,ehrfile,eid,vid):
client.auth = (username,password)
current_app.logger.debug('inside updateehrstatus')
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/ehr_status')
ehrstat = json.loads(ehrfile)
ehrstatusjson=json.dumps(ehrstat)
response = client.put(myurl,params={'format': 'RAW'},headers={'Authorization':auth,'Content-Type':'application/json', \
'accept':'application/json','If-Match':vid, \
'Prefer': 'return=representation'}, data=ehrstatusjson)
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
current_app.logger.info(f"PUT EHR_STATUS success. ehr={eid} versionid={vid}")
else:
myresp["status"]="failure"
current_app.logger.warning(f"PUT EHR_STATUS failure.ehr={eid} versionid={vid}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
def getehrstatusversioned(client,auth,hostname,port,username,password,eid,outtype,vat,vid):
client.auth = (username,password)
current_app.logger.debug('inside getehrstatus')
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
if outtype=='INFO':
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/versioned_ehr_status')
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
current_app.logger.info(f"GET EHR_STATUS Versioned success for ehrid={eid} outtype={outtype}")
else:
myresp["status"]="failure"
current_app.logger.info(f"GET EHR_STATUS Versioned failure for ehrid={eid} outtype={outtype}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
elif outtype=='REVHIST':
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/versioned_ehr_status/revision_history')
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
current_app.logger.info(f"GET EHR_STATUS Versioned success for ehrid={eid} outtype={outtype}")
else:
myresp["status"]="failure"
current_app.logger.info(f"GET EHR_STATUS Versioned failure for ehrid={eid} outtype={outtype}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
elif outtype=='VAT':
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/versioned_ehr_status/version')
if vat=="":
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json'} )
else:
response = client.get(myurl,params={'version_at_time':vat},headers={'Authorization':auth,'Content-Type':'application/json'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
current_app.logger.info(f"GET EHR_STATUS Versioned success for ehrid={eid} outtype={outtype}")
else:
myresp["status"]="failure"
current_app.logger.info(f"GET EHR_STATUS VErsioned failure for ehrid={eid} outtype={outtype}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
else: #outtype='VBV'
if vid=='':
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/versioned_ehr_status/version')
else:
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/versioned_ehr_status/version/'+vid)
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
current_app.logger.info(f"GET EHR_STATUS Versioned success for ehrid={eid} outtype={outtype}")
else:
myresp["status"]="failure"
current_app.logger.info(f"GET EHR_STATUS Versioned failure for ehrid={eid} outtype={outtype}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
def getdir(client,auth,hostname,port,username,password,eid,outtype,vat,vid,path,filetype):
client.auth = (username,password)
current_app.logger.debug('inside getehrstatus')
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
if outtype=='VAT':
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/directory')
if vat=="":
if filetype=='JSON':
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json','Prefer':'return=representation','accept':'application/json'} )
else:
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json','Prefer':'return=representation'} )
else:
if filetype=='JSON':
response = client.get(myurl,params={'version_at_time':vat,'path':path},headers={'Authorization':auth,'Content-Type':'application/json','Prefer':'return=representation','accept':'application/json'} )
else:
response = client.get(myurl,params={'version_at_time':vat,'path':path},headers={'Authorization':auth,'Content-Type':'application/json','Prefer':'return=representation'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
if filetype=='JSON':
myresp['json']=response.text
else:
xmlstringwithencoding=response.text
positionfirstgreaterthan=xmlstringwithencoding.find('>')
if 'encoding' in xmlstringwithencoding[0:positionfirstgreaterthan+1]:
xmlstring=xmlstringwithencoding[positionfirstgreaterthan+1:]
else:
xmlstring=xmlstringwithencoding
root = etree.fromstring(xmlstring)
myresp['xml']=etree.tostring(root, encoding='unicode', method='xml', pretty_print=True)
current_app.logger.info(f"GET Directory success for ehrid={eid} outtype={outtype} path={path} filetype={filetype}")
else:
myresp["status"]="failure"
current_app.logger.info(f"GET Directory failure for ehrid={eid} outtype={outtype} path={path} filetype={filetype}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
else: #outtype='VBV'
if vid=='':
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/directory/')
else:
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/directory/'+vid)
if filetype=='JSON':
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json','Prefer':'return=representation','accept':'application/json'} )
else:
response = client.get(myurl,headers={'Authorization':auth,'Content-Type':'application/json','Prefer':'return=representation'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
if filetype=='JSON':
myresp['json']=response.text
else:
xmlstringwithencoding=response.text
positionfirstgreaterthan=xmlstringwithencoding.find('>')
if 'encoding' in xmlstringwithencoding[0:positionfirstgreaterthan+1]:
xmlstring=xmlstringwithencoding[positionfirstgreaterthan+1:]
else:
xmlstring=xmlstringwithencoding
root = etree.fromstring(xmlstring)
myresp['xml']=etree.tostring(root, encoding='unicode', method='xml', pretty_print=True)
current_app.logger.info(f"GET Directory success for ehrid={eid} outtype={outtype} path={path} filetype={filetype}")
else:
myresp["status"]="failure"
current_app.logger.info(f"GET Directory failure for ehrid={eid} outtype={outtype} path={path} filetype={filetype}")
myresp['text']=response.text
myresp["headers"]=response.headers
return myresp
def postdir(client,auth,hostname,port,username,password,eid,uploaded_dir,filetype):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
current_app.logger.debug('inside postdir')
client.auth = (username,password)
dir = json.loads(uploaded_dir)
dirjson=json.dumps(dir)
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/directory')
if filetype=='JSON':
response=client.post(myurl,headers={'Authorization':auth,\
'Content-Type':'application/json','Prefer': 'return=representation', \
'accept':'application/json'}, \
data=dirjson)
else:
response=client.post(myurl,headers={'Authorization':auth,\
'Content-Type':'application/json','Prefer': 'return=representation'}, \
data=dirjson)
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp['headers']=response.headers
myresp['status_code']=response.status_code
myresp['text']=response.text
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
if filetype=='XML':
xmlstringwithencoding=response.text
positionfirstgreaterthan=xmlstringwithencoding.find('>')
if 'encoding' in xmlstringwithencoding[0:positionfirstgreaterthan+1]:
xmlstring=xmlstringwithencoding[positionfirstgreaterthan+1:]
else:
xmlstring=xmlstringwithencoding
root = etree.fromstring(xmlstring)
myresp['xml']=etree.tostring(root, encoding='unicode', method='xml', pretty_print=True)
else:
myresp['json']=response.text
current_app.logger.info(f'Directory FOLDER POST success filetype={filetype}')
else:
myresp['status']='failure'
current_app.logger.warning(f'Directory FOLDER POST FAILURE')
return myresp
def updatedir(client,auth,hostname,port,username,password,eid,vid,uploaded_dir,filetype):
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/openehr/v1/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/openehr/v1/"
current_app.logger.debug('inside updatedir')
client.auth = (username,password)
dir = json.loads(uploaded_dir)
dirjson=json.dumps(dir)
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/directory')
if filetype=='JSON':
response=client.put(myurl,headers={'Authorization':auth,\
'Content-Type':'application/json','Prefer': 'return=representation',
'If-Match':vid,'accept':'application/json'},
data=dirjson)
else:
response=client.put(myurl,headers={'Authorization':auth,\
'Content-Type':'application/json','Prefer': 'return=representation',
'If-Match':vid},
data=dirjson)
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp['headers']=response.headers
myresp['status_code']=response.status_code
myresp['text']=response.text
if(response.status_code<210 and response.status_code>199):
myresp['status']='success'
if filetype=='XML':
xmlstringwithencoding=response.text
positionfirstgreaterthan=xmlstringwithencoding.find('>')
if 'encoding' in xmlstringwithencoding[0:positionfirstgreaterthan+1]:
xmlstring=xmlstringwithencoding[positionfirstgreaterthan+1:]
else:
xmlstring=xmlstringwithencoding
root = etree.fromstring(xmlstring)
myresp['xml']=etree.tostring(root, encoding='unicode', method='xml', pretty_print=True)
else:
myresp['json']=response.text
current_app.logger.info(f'Directory FOLDER PUT success')
else:
myresp['status']='failure'
current_app.logger.warning(f'Directory FOLDER PUT FAILURE')
return myresp
def delfolder(client,adauth,hostname,port,adusername,adpassword,eid,vid):
client.adauth = (adusername,adpassword)
current_app.logger.debug('inside delfolder')
if hostname.startswith('http'):
EHR_SERVER_BASE_URL = hostname+":"+port+"/ehrbase/rest/admin/"
else:
EHR_SERVER_BASE_URL = "http://"+hostname+":"+port+"/ehrbase/rest/admin/"
myurl=url_normalize(EHR_SERVER_BASE_URL + 'ehr/'+eid+'/directory/'+vid)
response = client.delete(myurl,headers={'Authorization':adauth,'Content-Type':'application/json'} )
current_app.logger.debug('Response Url')
current_app.logger.debug(response.url)
current_app.logger.debug('Response Status Code')
current_app.logger.debug(response.status_code)
current_app.logger.debug('Response Text')
current_app.logger.debug(response.text)
current_app.logger.debug('Response Headers')
current_app.logger.debug(response.headers)
myresp={}
myresp["status_code"]=response.status_code
if(response.status_code<210 and response.status_code>199):
myresp["status"]="success"
current_app.logger.info(f"DELETE Directory success for ehrid={eid} vid={vid}")