-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathindex.html
254 lines (227 loc) · 10.9 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="">
<meta name="author" content="">
<title>UK Crop Diversity: Bioinformatics HPC Resource</title>
<!-- Bootstrap core CSS -->
<link href="vendor/bootstrap/css/bootstrap.min.css" rel="stylesheet">
<!-- Custom fonts for this template -->
<link href="vendor/fontawesome-free/css/all.min.css" rel="stylesheet">
<link href="https://fonts.googleapis.com/css?family=Lato:300,400,700,300italic,400italic,700italic" rel="stylesheet" type="text/css">
<!-- Custom styles for this template -->
<link href="css/landing-page.css" rel="stylesheet">
<script defer data-domain="cropdiversity.ac.uk" src="https://plausible.hutton.ac.uk/js/plausible.js"></script>
</head>
<body>
<nav id="navbar-top" class="navbar sticky-top navbar-light bg-light">
<div class="container">
<a class="navbar-brand" href="#">UK Crop Diversity: Bioinformatics HPC Resource</a>
<ul class="nav">
<li class="list-inline-item nav-item">
<a href="#about">About</a>
</li>
<li class="list-inline-item nav-item">⋅</li>
<li class="list-inline-item nav-item">
<a href="#system">System Info</a>
</li>
<li class="list-inline-item nav-item">⋅</li>
<li class="list-inline-item nav-item">
<a href="#partners">Partner Organisations</a>
</li>
<li class="list-inline-item nav-item">⋅</li>
<li class="list-inline-item nav-item">
<a href="#funding">Funding</a>
</li>
<li class="list-inline-item nav-item">⋅</li>
<li class="list-inline-item nav-item">
<a href="https://help.cropdiversity.ac.uk">Help</a>
</li>
</ul>
</div>
</nav>
<!-- Masthead -->
<header class="masthead text-white text-center">
<div class="overlay"></div>
<div class="container">
<div class="row">
<div class="col-xl-9 mx-auto">
<h1 class="mb-5">UK Crop Diversity</h1><h2 class="mb-5">Bioinformatics HPC Resource</h2>
</div>
</div>
</div>
</header>
<div data-spy="scroll" data-targer="#navbar-top" data-offset="50">
<section id="about" class="about text-center">
<div class="container">
<p>This high-performance computing platform supports the work of a large consortium of UK scientific institutions leading the work in the development of new informatics tools and implementation of advanced analysis of crop genetics diversity data.</p>
<p>The development of improved crop varieties is vital to providing a sustainable and secure food supply to address some of the grand challenges of our time. Breeding more nutritious and climate resilient crop varieties is required to meet the demands of a growing population, but lack of available and accessible genetic diversity has historically limited progress. Developments in sequencing and genotyping technologies together with advances in environmental monitoring and characterisation are leading to rapid changes in the opportunities that are available to evaluate and utilise <b>genetic diversity in crop plants and their wild relatives</b> to adapt to the changing landscape of agriculture. Advanced bioinformatics and data analysis tools enable us to manage, model and mine vast amounts of genomic data to identify genetic markers and traits that provide the key to better varieties and new crops.</p>
<p> </p>
</div>
</section>
<!-- Icons Grid -->
<section id="system" class="features-icons bg-light text-center">
<div class="container">
<div class="row">
<div class="col-lg-4">
<div class="features-icons-item mx-auto mb-5 mb-lg-0 mb-lg-3">
<div class="features-icons-icon d-flex">
<i class="fa fa-fw fa-microchip m-auto text-primary"></i>
</div>
<h3>CPUs</h3>
<p class="lead mb-0">5,000+ CPU cores</p>
<p class="lead mb-0">500,000 GPU cores</p>
</div>
</div>
<div class="col-lg-4">
<div class="features-icons-item mx-auto mb-5 mb-lg-0 mb-lg-3">
<div class="features-icons-icon d-flex">
<i class="fa fa-fw fa-memory m-auto text-primary"></i>
</div>
<h3>Memory</h3>
<p class="lead mb-0">41 TB of memory</p>
</div>
</div>
<div class="col-lg-4">
<div class="features-icons-item mx-auto mb-0 mb-lg-3">
<div class="features-icons-icon d-flex">
<i class="fa fa-fw fa-hdd m-auto text-primary"></i>
</div>
<h3>Storage</h3>
<p class="lead mb-0">8 PB of capacity</p>
</div>
</div>
</div>
</div>
</section>
<!-- Image Showcases -->
<section class="showcase">
<div class="container-fluid p-0">
<div class="row no-gutters">
<div class="col-lg-6 order-lg-2 text-white showcase-img" style="background-image: url('img/cpu.jpg');"></div>
<div class="col-lg-6 order-lg-1 my-auto showcase-text">
<h2>CPUs</h2>
<p class="lead mb-0">120 physical compute nodes offer access to a variety of Intel and AMD CPUs providing 5,224 compute cores
(10,448 threads) in total. We use both AMD EPYC and Intel Xeon Scalable processors. A large complement of Nvidia-enabled GPU
nodes provide a further 500,000 CUDA cores.
</p>
</div>
</div>
<div class="row no-gutters">
<div class="col-lg-6 text-white showcase-img" style="background-image: url('img/ram.jpg');"></div>
<div class="col-lg-6 my-auto showcase-text">
<h2>Memory</h2>
<p class="lead mb-0">The cluster has 41 TB of available memory. Several large memory machines
provide capacities from 1 to 4 TB, whereas the compute nodes have between 192 and 512 GB.</p>
</div>
</div>
<div class="row no-gutters">
<div class="col-lg-6 order-lg-2 text-white showcase-img" style="background-image: url('img/hdd.jpg');"></div>
<div class="col-lg-6 order-lg-1 my-auto showcase-text">
<h2>Storage</h2>
<p class="lead mb-0">An multi-node BeeGFS parallel storage system (running over a 100-gigabit network
backbone) provides access to 8 petabytes of storage. This is complemented by an addtional 5 PB of backup
capacity.
</p>
</div>
</div>
</div>
</section>
<section id="partners" class="partners text-center">
<div class="container">
<h2 class="mb-5">Partner Organisations</h2>
<div class="container">
<p>This resource is available to researchers (and select collaborators) from any of the following UK research institutes:</p>
</div>
<div class="row">
<div class="col-lg-3 d-flex justify-content-center">
<img src="img/institutions/niab.png" class="p-4"/>
</div>
<div class="col-lg-3 d-flex justify-content-center">
<img src="img/institutions/jhi.svg" class="p-4"/>
</div>
<div class="col-lg-3 d-flex justify-content-center">
<img src="img/institutions/sruc.svg" class="p-4"/>
</div>
<div class="col-lg-3 d-flex justify-content-center">
<img src="img/institutions/bioss.svg" class="p-4"/>
</div>
<div class="col-lg-4 d-flex justify-content-center">
<img src="img/institutions/rbge.svg" class="p-4"/>
</div>
<div class="col-lg-4 d-flex justify-content-center">
<img src="img/institutions/kew.svg" class="p-4"/>
</div>
<div class="col-lg-4 d-flex justify-content-center">
<img src="img/institutions/nhm.svg" class="p-4"/>
</div>
</div>
</div>
</section>
<section id="funding" class="funders text-center bg-light">
<div class="container">
<h2 class="mb-4">Funding</h2>
<div class="container">
<p>The bulk of funding for this HPC resource was awarded as part of a BBSRC 18ALERT grant (BB/S019669/1)
but all of the entities listed below have contributed in some way to either the purchase of hardware,
software, or assistance with running and/or staff costs.</p>
</div>
<div class="row">
<div class="col-lg-4 d-flex justify-content-center">
<img src="img/funders/bbsrc.svg" class="p-4"/>
</div>
<div class="col-lg-4 d-flex justify-content-center">
<img src="img/funders/uosa.svg" class="p-4"/>
</div>
<div class="col-lg-4 d-flex justify-content-center">
<img src="img/funders/scottish-government.svg" class="p-4"/>
</div>
</div>
</div>
<div class="container mt-5"></div>
<h4 class="mb-4">Technology Partner</h4>
<div class="container">
<p>The HPC cluster was designed in collaboration with Dell Technologies and the input of their Public Sector Higher
Education and Research Team. The cluster uses PowerEdge Servers, PowerVault Storage and Dell Networking.</p>
<p class="mb-0">Learn more at <a target="_blank" href="https://www.delltechnologies.com/en-gb/solutions/high-performance-computing/index.htm">Dell Technologies - HPC</a></p>
<div class="row">
<div class="col-2 d-none d-md-block"></div>
<div class="col-12 col-md-8 d-flex justify-content-center">
<img src="img/dell.svg" class="p-4 img-fluid w-100"/>
</div>
<div class="col-2 d-none d-md-block"></div>
</div>
</div>
</div>
</section>
<!-- Call to Action -->
<section class="call-to-action text-white text-center">
<div class="overlay"></div>
<div class="container">
<div class="row">
<div class="col-md-10 col-lg-8 col-xl-7 mx-auto">
<form action="https://help.cropdiversity.ac.uk">
<button class="btn btn-block btn-lg btn-primary">Click here for Help and Documentation</button>
</form>
</div>
</div>
</div>
</section>
</div>
<!-- Footer -->
<footer class="footer bg-light">
<div class="container">
<div class="row">
<div class="col-lg-6 h-100 text-center text-lg-left my-auto">
<p class="text-muted small mb-4 mb-lg-0">© <script>document.write(new Date().getFullYear())</script> Information & Computational Sciences, The James Hutton Institute</p>
</div>
</div>
</div>
</footer>
<!-- Bootstrap core JavaScript -->
<script src="vendor/jquery/jquery.min.js"></script>
<script src="vendor/bootstrap/js/bootstrap.bundle.min.js"></script>
</body>
</html>