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DESCRIPTION
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DESCRIPTION
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Package: samc
Type: Package
Title: Spatial Absorbing Markov Chains
Version: 4.0.0
Authors@R: c(
person("Andrew", "Marx", , "[email protected]", role = c("aut", "cre", "cph"),
comment = c(ORCID = "0000-0002-7456-1631")
),
person("Robert", "Fletcher", , , role = c("ctb"),
comment = c(ORCID = "0000-0003-1717-5707")
),
person("Miguel", "Acevedo", , , role = c("ctb"),
comment = c(ORCID = "0000-0002-8289-1497")
),
person("Jorge", "Sefair", , , role = c("ctb"),
comment = c(ORCID = "0000-0002-5887-8938")
),
person("Chao", "Wang", , , role = c("ctb"),
comment = c(ORCID = "0000-0003-2706-5122")
),
person("Hughes", "Josie", , , role = c("ctb"),
comment = c(ORCID = "0000-0001-7875-9015")
),
person("Barrett", "Griffin", , , role = c("ctb"))
)
Description: Implements functions for working with absorbing Markov chains. The
implementation is based on the framework described in "Toward a unified
framework for connectivity that disentangles movement and mortality in space
and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies
them to spatial ecology. This framework incorporates both resistance and
absorption with spatial absorbing Markov chains (SAMC) to provide several
short-term and long-term predictions for metrics related to connectivity in
landscapes. Despite the ecological context of the framework, this package
can be used in any application of absorbing Markov chains.
License: AGPL (>= 3)
URL: https://andrewmarx.github.io/samc/
BugReports: https://github.com/andrewmarx/samc/issues/
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6.0)
Imports: methods, Matrix (>= 1.5-3), raster, terra (>= 1.7-3), circular
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, testthat, gdistance, viridisLite
VignetteBuilder: knitr
Collate: 'RcppExports.R' 'location-class.R' 'internal-classes.R'
'samc-class.R' 'absorption.R' 'check.R' 'cond_passage.R'
'data.R' 'visitation.R' 'dispersal.R' 'distribution.R'
'generics.R' 'internal-data.R' 'internal-functions.R'
'internal-utils.R' 'internal-validation.R' 'locate.R' 'map.R'
'mortality.R' 'pairwise.R' 'rasterize.R' 'samc.R' 'survival.R'
'zzz.R'
LinkingTo: Rcpp (>= 1.0.10), RcppEigen (>= 0.3.3.9.3), RcppThread (>=
2.1.3)
NeedsCompilation: yes
Packaged: 2024-10-30 22:17:23 UTC; andrewjmarx
Author: Andrew Marx [aut, cre, cph] (<https://orcid.org/0000-0002-7456-1631>),
Robert Fletcher [ctb] (<https://orcid.org/0000-0003-1717-5707>),
Miguel Acevedo [ctb] (<https://orcid.org/0000-0002-8289-1497>),
Jorge Sefair [ctb] (<https://orcid.org/0000-0002-5887-8938>),
Chao Wang [ctb] (<https://orcid.org/0000-0003-2706-5122>),
Hughes Josie [ctb] (<https://orcid.org/0000-0001-7875-9015>),
Barrett Griffin [ctb]
Maintainer: Andrew Marx <[email protected]>
Repository: CRAN
Date/Publication: 2024-10-30 22:40:02 UTC